0.009016 0.000000 0.000000 0.000000 0.009016 0.000000 0.000000 0.000000 0.023180 0.00000 0.00000 0.00000 De Rosa, M. Zacarias, S. Athanasiadis, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 110.910 110.910 43.140 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C N 100 N N N 101 N C N 102 N O N 103 N N N 104 N C N 105 N N N 106 N C N 107 N C N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N O N 123 N P N 124 N O N 125 N O N 126 N O N 127 N C N 128 R C N 129 N O N 130 S C N 131 N O N 132 N C N 133 R C Y 134 N N Y 135 N C Y 136 N N Y 137 N C N 138 N C N 139 N O N 140 N N N 141 N C N 142 N N N 143 N N Y 144 N C N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N P N 161 N O N 162 N O N 163 N O N 164 N C N 165 R C N 166 N O N 167 S C N 168 N O N 169 N C N 170 R C N 171 N N N 172 N C N 173 N O N 174 N N N 175 N C N 176 N O N 177 N C N 178 N C N 179 N C N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N N N 196 S C N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N O N 203 N N N 204 N O N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N O N 223 N O N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 N C N 236 N C N 237 N O N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C Y 249 N C Y 250 N N Y 251 N C Y 252 N C Y 253 N N N 254 N O N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N O N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 S C N 273 N C N 274 N C N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N C N 318 N C N 319 N C N 320 N N N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C N 342 N C N 343 N S N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C N 385 N C N 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C N 402 N O N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N N N 412 S C N 413 N C N 414 N O N 415 R C N 416 N O N 417 N C N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N N Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C N 442 N O N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N N N 456 S C N 457 N C N 458 N O N 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C Y 465 N C N 466 N O N 467 N O N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N N N 480 S C N 481 N C N 482 N O N 483 N C N 484 N C N 485 N C N 486 N O N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing Y 141 N sing Y 142 N sing Y 143 N doub N 144 N sing Y 145 N sing N 146 N sing Y 147 N doub N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing Y 251 N sing Y 252 N doub Y 253 N doub N 254 N sing Y 255 N sing N 256 N sing Y 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N doub N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing Y 359 N doub Y 360 N sing Y 361 N sing N 362 N sing Y 363 N doub N 364 N sing Y 365 N doub N 366 N sing Y 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N doub N 424 N sing N 425 N sing N 426 N sing N 427 N sing Y 428 N doub Y 429 N sing Y 430 N sing N 431 N sing Y 432 N doub Y 433 N sing Y 434 N sing N 435 N sing Y 436 N sing Y 437 N doub N 438 N sing Y 439 N doub N 440 N sing Y 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing Y 456 N doub Y 457 N sing Y 458 N sing N 459 N sing Y 460 N doub N 461 N sing Y 462 N doub N 463 N sing Y 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N doub N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 41 9924 9933 10.1093/nar/gkt743 23975196 Structural basis for Z-DNA binding and stabilization by the zebrafish Z-DNA dependent protein kinase PKZ. 2013 10.2210/pdb4lb6/pdb pdb_00004lb6 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 70 1 PIXEL 2012-09-29 PILATUS 6M-F SINGLE WAVELENGTH M x-ray 1 0.97 1.0 ID23-1 ESRF 0.97 SYNCHROTRON ESRF BEAMLINE ID23-1 8450.583 Protein kinase containing Z-DNA binding domains 2.7.11.1 Zalpha domain, UNP residues 5-70 1 man polymer 3969.561 5'-D(*TP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3' 1 syn polymer 18.015 water 73 nat water Uncharacterized protein, Z-DNA binding protein kinase no no GSHMASSAENEIEMRICDYLRRHGRSTVQDIFKELKLEKSTVNRHLYSLQASKQVFKTVEDNKRPVWNLVES GSHMASSAENEIEMRICDYLRRHGRSTVQDIFKELKLEKSTVNRHLYSLQASKQVFKTVEDNKRPVWNLVES B polypeptide(L) no no (DT)(DC)(DG)(DC)(DG)(DC)(DG)(DC)(DG)(DC)(DG)(DC)(DG) TCGCGCGCGCGCG C polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n leopard danio,zebra danio,zebra fish sample pkz 7955 Danio rerio 469008 Escherichia coli BL21 (DE3) pET28b 1 2.67 53.94 VAPOR DIFFUSION, HANGING DROP 5.4 2.0 M ammonium sulfate, 0.1 M sodium acetate, 7.5 % glycerol, pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 -0.648 1 19 C 8 C 11 2.371 C_DC8:DG11_C 1 3.806 -0.298 0.174 -0.179 0.055 1 19 C 9 C 10 -0.820 C_DG9:DC10_C 2 2.111 0.487 0.121 -0.105 -0.055 1 19 C 10 C 9 -0.820 C_DC10:DG9_C 3 2.111 -0.487 0.121 -0.105 0.648 1 19 C 11 C 8 2.371 C_DG11:DC8_C 4 3.806 0.298 0.174 -0.179 2.320 -11.285 C C 8 9 -11.711 C C 11 10 3.492 2.282 -0.032 5.364 CC_DC8DG9:DC10DG11_CC 1 1.289 6.614 -10.977 -30.298 1.544 3.311 -55.759 C C 9 10 5.158 C C 10 9 3.396 -4.819 0.000 -0.934 CC_DG9DC10:DG9DC10_CC 2 0.000 0.000 -55.567 1.285 0.000 2.320 -11.285 C C 10 11 -11.711 C C 9 8 3.492 2.282 0.032 5.364 CC_DC10DG11:DC8DG9_CC 3 -1.289 -6.614 -10.977 -30.298 -1.544 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Database references Data collection Database references Refinement description 1 0 2013-09-18 1 1 2013-12-04 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details RCSB Y RCSB 2013-06-20 REL REL HOH water Synthetic oligonucleotide sample 4LB5 PDB ENTRY 4LB5 PDB experimental model HOH 1 3 HOH HOH 101 B HOH 2 3 HOH HOH 102 B HOH 5 3 HOH HOH 103 B HOH 7 3 HOH HOH 104 B HOH 10 3 HOH HOH 105 B HOH 11 3 HOH HOH 106 B HOH 16 3 HOH HOH 107 B HOH 17 3 HOH HOH 108 B HOH 18 3 HOH HOH 109 B HOH 20 3 HOH HOH 110 B HOH 23 3 HOH HOH 111 B HOH 24 3 HOH HOH 112 B HOH 26 3 HOH HOH 113 B HOH 27 3 HOH HOH 114 B HOH 31 3 HOH HOH 115 B HOH 35 3 HOH HOH 116 B HOH 39 3 HOH HOH 117 B HOH 41 3 HOH HOH 118 B HOH 42 3 HOH HOH 119 B HOH 43 3 HOH HOH 120 B HOH 45 3 HOH HOH 121 B HOH 46 3 HOH HOH 122 B HOH 47 3 HOH HOH 123 B HOH 48 3 HOH HOH 124 B HOH 49 3 HOH HOH 125 B HOH 50 3 HOH HOH 126 B HOH 53 3 HOH HOH 127 B HOH 54 3 HOH HOH 128 B HOH 55 3 HOH HOH 129 B HOH 56 3 HOH HOH 130 B HOH 59 3 HOH HOH 131 B HOH 61 3 HOH HOH 132 B HOH 63 3 HOH HOH 133 B HOH 64 3 HOH HOH 134 B HOH 67 3 HOH HOH 135 B HOH 68 3 HOH HOH 136 B HOH 70 3 HOH HOH 137 B HOH 71 3 HOH HOH 138 B HOH 72 3 HOH HOH 139 B HOH 73 3 HOH HOH 140 B HOH 74 3 HOH HOH 141 B HOH 76 3 HOH HOH 142 B HOH 3 3 HOH HOH 101 C HOH 4 3 HOH HOH 102 C HOH 6 3 HOH HOH 103 C HOH 8 3 HOH HOH 104 C HOH 9 3 HOH HOH 105 C HOH 12 3 HOH HOH 106 C HOH 13 3 HOH HOH 107 C HOH 14 3 HOH HOH 108 C HOH 15 3 HOH HOH 109 C HOH 19 3 HOH HOH 110 C HOH 21 3 HOH HOH 111 C HOH 22 3 HOH HOH 112 C HOH 25 3 HOH HOH 113 C HOH 28 3 HOH HOH 114 C HOH 29 3 HOH HOH 115 C HOH 30 3 HOH HOH 116 C HOH 32 3 HOH HOH 117 C HOH 33 3 HOH HOH 118 C HOH 34 3 HOH HOH 119 C HOH 36 3 HOH HOH 120 C HOH 37 3 HOH HOH 121 C HOH 38 3 HOH HOH 122 C HOH 40 3 HOH HOH 123 C HOH 44 3 HOH HOH 124 C HOH 51 3 HOH HOH 125 C HOH 52 3 HOH HOH 126 C HOH 57 3 HOH HOH 127 C HOH 60 3 HOH HOH 128 C HOH 62 3 HOH HOH 129 C HOH 69 3 HOH HOH 130 C HOH 75 3 HOH HOH 131 C n 1 -1 B n 2 0 B n 3 1 B n 4 2 B n 5 3 B n 6 4 B n 7 5 B n 8 6 B GLU 7 n 9 GLU 7 B ASN 8 n 10 ASN 8 B GLU 9 n 11 GLU 9 B ILE 10 n 12 ILE 10 B GLU 11 n 13 GLU 11 B MET 12 n 14 MET 12 B ARG 13 n 15 ARG 13 B ILE 14 n 16 ILE 14 B CYS 15 n 17 CYS 15 B ASP 16 n 18 ASP 16 B TYR 17 n 19 TYR 17 B LEU 18 n 20 LEU 18 B ARG 19 n 21 ARG 19 B ARG 20 n 22 ARG 20 B HIS 21 n 23 HIS 21 B GLY 22 n 24 GLY 22 B ARG 23 n 25 ARG 23 B SER 24 n 26 SER 24 B THR 25 n 27 THR 25 B VAL 26 n 28 VAL 26 B GLN 27 n 29 GLN 27 B ASP 28 n 30 ASP 28 B ILE 29 n 31 ILE 29 B PHE 30 n 32 PHE 30 B LYS 31 n 33 LYS 31 B GLU 32 n 34 GLU 32 B LEU 33 n 35 LEU 33 B LYS 34 n 36 LYS 34 B LEU 35 n 37 LEU 35 B GLU 36 n 38 GLU 36 B LYS 37 n 39 LYS 37 B SER 38 n 40 SER 38 B THR 39 n 41 THR 39 B VAL 40 n 42 VAL 40 B ASN 41 n 43 ASN 41 B ARG 42 n 44 ARG 42 B HIS 43 n 45 HIS 43 B LEU 44 n 46 LEU 44 B TYR 45 n 47 TYR 45 B SER 46 n 48 SER 46 B LEU 47 n 49 LEU 47 B GLN 48 n 50 GLN 48 B ALA 49 n 51 ALA 49 B SER 50 n 52 SER 50 B LYS 51 n 53 LYS 51 B GLN 52 n 54 GLN 52 B VAL 53 n 55 VAL 53 B PHE 54 n 56 PHE 54 B LYS 55 n 57 LYS 55 B THR 56 n 58 THR 56 B VAL 57 n 59 VAL 57 B GLU 58 n 60 GLU 58 B ASP 59 n 61 ASP 59 B ASN 60 n 62 ASN 60 B LYS 61 n 63 LYS 61 B ARG 62 n 64 ARG 62 B PRO 63 n 65 PRO 63 B VAL 64 n 66 VAL 64 B TRP 65 n 67 TRP 65 B ASN 66 n 68 ASN 66 B LEU 67 n 69 LEU 67 B VAL 68 n 70 VAL 68 B GLU 69 n 71 GLU 69 B n 72 70 B n 1 7 C DC 8 n 2 DC 8 C DG 9 n 3 DG 9 C DC 10 n 4 DC 10 C DG 11 n 5 DG 11 C DC 12 n 6 DC 12 C DG 13 n 7 DG 13 C n 8 14 C n 9 15 C n 10 16 C n 11 17 C n 12 18 C n 13 19 C 2.6131 1.8549 -0.3418 5.9651 -0.0347 2.0744 -0.0160 0.2205 -0.1579 -0.3529 -0.3420 -0.5563 0.1730 1.0005 0.2932 0.1615 0.0215 -0.0458 0.5634 0.0690 0.3920 refined -4.6410 27.9134 20.4601 X-RAY DIFFRACTION 6.1764 2.5436 0.4755 7.4409 -0.1937 5.3858 -0.6224 1.7057 0.4543 -0.7020 0.8746 -0.2335 -0.0756 0.5530 -0.1489 0.1870 -0.0467 -0.0318 0.4917 0.0455 0.2409 refined -13.0537 28.1087 14.8579 X-RAY DIFFRACTION 9.7803 0.8630 2.2742 9.1128 4.6871 2.8301 0.1051 -0.5851 0.3494 0.3995 0.0212 -0.2850 0.0687 0.0973 -0.0938 0.1332 -0.0046 0.0120 0.2462 0.0267 0.1799 refined -15.1365 28.8271 25.6203 X-RAY DIFFRACTION 9.0410 -6.1577 2.0030 6.0914 -1.5014 5.7413 -0.0751 -0.7726 1.5113 -0.0479 0.6892 0.3140 -0.3547 0.6560 -0.4742 0.2292 -0.0585 -0.0125 0.4531 -0.1431 0.8008 refined -10.6694 38.2505 26.6675 X-RAY DIFFRACTION 1.8823 0.5101 -0.9253 0.4033 0.9697 6.6748 -0.4020 0.0861 1.9318 -0.2186 -0.1638 0.3378 -1.1181 -0.0405 0.5734 0.2992 -0.0648 -0.0773 0.2587 0.0761 0.8813 refined -16.2159 39.6957 19.5571 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'B' and (resid 7 through 21 ) X-RAY DIFFRACTION 2 chain 'B' and (resid 22 through 36 ) X-RAY DIFFRACTION 3 chain 'B' and (resid 37 through 49 ) X-RAY DIFFRACTION 4 chain 'B' and (resid 50 through 56 ) X-RAY DIFFRACTION 5 chain 'B' and (resid 57 through 69 ) author_defined_assembly 8 octameric 2800 -25 9050 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_556 -y,-x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 43.1400000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 10_454 -x-1/2,-y+1/2,z-1/2 crystal symmetry operation -55.4550000000 55.4550000000 -21.5700000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 15_455 y-1/2,x+1/2,-z+1/2 crystal symmetry operation -55.4550000000 55.4550000000 21.5700000000 B N PHE 54 A N PHE 56 B O ASN 66 A O ASN 68 1 B HOH 117 C HOH 1 C HOH 108 D HOH 1 C HOH 119 D HOH 1 C HOH 120 D HOH 1 C HOH 121 D HOH 1 B GLY -1 A GLY 1 1 Y 1 B SER 0 A SER 2 1 Y 1 B HIS 1 A HIS 3 1 Y 1 B MET 2 A MET 4 1 Y 1 B ALA 3 A ALA 5 1 Y 1 B SER 4 A SER 6 1 Y 1 B SER 5 A SER 7 1 Y 1 B ALA 6 A ALA 8 1 Y 1 B SER 70 A SER 72 1 Y 1 C DT 7 B DT 1 1 Y 1 C DC 14 B DC 8 1 Y 1 C DG 15 B DG 9 1 Y 1 C DC 16 B DC 10 1 Y 1 C DG 17 B DG 11 1 Y 1 C DC 18 B DC 12 1 Y 1 C DG 19 B DG 13 1 Y 1 C C OP1 O DG HOH 9 112 2.07 1 B B OD2 NH1 ASP ARG 16 20 2.11 1 B B O O HOH HOH 126 133 2.13 1 3.01 0.40 120.30 123.31 C C C C6 N1 C2 DC DC DC 8 8 8 N 1 2.54 0.40 121.90 124.44 C C C N3 C4 C5 DC DC DC 8 8 8 N 1 -7.54 0.90 105.70 98.16 C C C O5' P OP1 DG DG DG 9 9 9 N 1 3.94 0.60 106.00 109.94 C C C O4' C4' C3' DG DG DG 9 9 9 N 1 -4.57 0.60 125.10 120.53 C C C C6 N1 C2 DG DG DG 9 9 9 N 1 9.60 1.50 119.60 129.20 C C C OP1 P OP2 DG DG DG 13 13 13 N 1 -5.53 0.40 104.50 98.97 C C C O4' C4' C3' DG DG DG 13 13 13 N 1 -11.40 1.80 114.10 102.70 C C C C5' C4' C3' DG DG DG 13 13 13 N 1 -16.98 2.50 109.70 92.72 C C C C4' C3' O3' DG DG DG 13 13 13 N 1 -6.14 0.70 108.00 101.86 C C C O4' C1' N9 DG DG DG 13 13 13 N 1 -3.75 0.60 125.10 121.35 C C C C6 N1 C2 DG DG DG 13 13 13 N 1 C C C5' C4' DC DC 12 12 0.049 0.007 1.512 1.561 N 1 C C O4' C4' DG DG 13 13 -0.062 0.010 1.446 1.384 N 1 C C O3' C3' DG DG 13 13 -0.064 0.006 1.419 1.355 N 1 B B O O HOH HOH 104 141 1.80 1_555 15_455 1 C C O O HOH HOH 124 131 1.85 1_555 8_556 1 B ASP 59 49.01 -130.94 0.2116 0.1809 0.1841 1.800 28.072 1216 12155 10.00 94.99 0.17 lattice symmetry 10% 1 1.35 MOLECULAR REPLACEMENT 21.00 0.90 1.11 PDB ENTRY 4LB5 ML FLAT BULK SOLVENT MODEL 1.800 28.072 73 731 0 123 535 0.019 684 2.062 944 19.133 274 0.138 105 0.009 100 0.2574 0.2328 1.8721 131 1188 95.00 0.2510 0.2237 1.9573 133 1188 95.00 0.2436 0.2019 2.0604 131 1178 95.00 0.2300 0.1877 2.1895 135 1213 96.00 0.2112 0.1793 2.3584 135 1211 96.00 0.2229 0.1893 2.5956 136 1231 97.00 0.2175 0.1948 2.9709 138 1241 97.00 0.2000 0.1662 3.7416 139 1244 96.00 0.1939 0.1667 28.0754 138 1245 90.00 27.1 1.8 32.55 4LB6 12161 2.0 0.074 1 11.3 4.6 96.4 0.679 1.8 1.9 2.2 1 4.7 96.0 data collection DNA phasing PHASER refinement PHENIX (phenix.refine: 1.8.2_1309) data reduction MOSFLM data scaling SCALA Crystal structure of PKZ Zalpha in complex with ds(CG)6 (tetragonal form) 1 N N 2 N N 3 N N 3 N N B GLU 7 A GLU 9 HELX_P B GLY 22 A GLY 24 1 1 16 B THR 25 A THR 27 HELX_P B LYS 34 A LYS 36 1 2 10 B GLU 36 A GLU 38 HELX_P B SER 50 A SER 52 1 3 15 hydrog WATSON-CRICK C DC 8 B N3 DC 2 1_555 C DG 11 B N1 DG 5 8_556 hydrog WATSON-CRICK C DC 8 B N4 DC 2 1_555 C DG 11 B O6 DG 5 8_556 hydrog WATSON-CRICK C DC 8 B O2 DC 2 1_555 C DG 11 B N2 DG 5 8_556 hydrog WATSON-CRICK C DG 9 B N1 DG 3 1_555 C DC 10 B N3 DC 4 8_556 hydrog WATSON-CRICK C DG 9 B N2 DG 3 1_555 C DC 10 B O2 DC 4 8_556 hydrog WATSON-CRICK C DG 9 B O6 DG 3 1_555 C DC 10 B N4 DC 4 8_556 hydrog WATSON-CRICK C DC 10 B N3 DC 4 1_555 C DG 9 B N1 DG 3 8_556 hydrog WATSON-CRICK C DC 10 B N4 DC 4 1_555 C DG 9 B O6 DG 3 8_556 hydrog WATSON-CRICK C DC 10 B O2 DC 4 1_555 C DG 9 B N2 DG 3 8_556 hydrog WATSON-CRICK C DG 11 B N1 DG 5 1_555 C DC 8 B N3 DC 2 8_556 hydrog WATSON-CRICK C DG 11 B N2 DG 5 1_555 C DC 8 B O2 DC 2 8_556 hydrog WATSON-CRICK C DG 11 B O6 DG 5 1_555 C DC 8 B N4 DC 2 8_556 TRANSFERASE/DNA wHTH, Zalpha, ZBD, Kinase, innate immunity, Z-DNA, Z-RNA, eIF2a, TRANSFERASE-DNA complex Q5NE14_DANRE UNP 1 5 Q5NE14 SAENEIEMRICDYLRRHGRSTVQDIFKELKLEKSTVNRHLYSLQASKQVFKTVEDNKRPVWNLVES 4LB6 PDB 2 4LB6 TCGCGCGCGCGCG 5 70 4LB6 5 70 Q5NE14 B 1 7 72 7 19 4LB6 7 19 4LB6 C 2 1 13 1 expression tag GLY -1 4LB6 B Q5NE14 UNP 1 1 expression tag SER 0 4LB6 B Q5NE14 UNP 2 1 expression tag HIS 1 4LB6 B Q5NE14 UNP 3 1 expression tag MET 2 4LB6 B Q5NE14 UNP 4 1 expression tag ALA 3 4LB6 B Q5NE14 UNP 5 1 expression tag SER 4 4LB6 B Q5NE14 UNP 6 2 anti-parallel B VAL 53 A VAL 55 B THR 56 A THR 58 B VAL 64 A VAL 66 B LEU 67 A LEU 69 97 I 4 2 2