0.009402
0.005428
0.000000
0.000000
0.010857
0.000000
0.000000
0.000000
0.007538
0.00000
0.00000
0.00000
Gorecka, K.M.
Komorowska, W.
Nowotny, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
106.356
106.356
132.653
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
N
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
R
C
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
N
Y
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
N
193
N
N
N
194
N
C
N
195
N
O
N
196
N
N
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
O
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
N
Y
273
N
C
Y
274
N
C
Y
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
S
C
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
N
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
C
N
362
N
S
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
N
404
N
C
N
405
N
C
N
406
N
O
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
N
C
N
421
N
O
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
R
C
N
435
N
O
N
436
N
C
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
N
C
Y
452
N
C
Y
453
N
C
Y
454
N
C
Y
455
N
N
Y
456
N
C
Y
457
N
C
Y
458
N
C
Y
459
N
C
Y
460
N
C
N
461
N
O
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
N
N
475
S
C
N
476
N
C
N
477
N
O
N
478
N
C
Y
479
N
C
Y
480
N
C
Y
481
N
C
Y
482
N
C
Y
483
N
C
Y
484
N
C
N
485
N
O
N
486
N
O
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
N
N
499
S
C
N
500
N
C
N
501
N
O
N
502
N
C
N
503
N
C
N
504
N
C
N
505
N
O
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
Y
276
N
sing
Y
277
N
doub
Y
278
N
doub
N
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
Y
382
N
doub
Y
383
N
sing
Y
384
N
sing
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
doub
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
doub
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
Y
451
N
doub
Y
452
N
sing
Y
453
N
sing
N
454
N
sing
Y
455
N
doub
Y
456
N
sing
Y
457
N
sing
N
458
N
sing
Y
459
N
sing
Y
460
N
doub
N
461
N
sing
Y
462
N
doub
N
463
N
sing
Y
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
doub
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
Y
479
N
doub
Y
480
N
sing
Y
481
N
sing
N
482
N
sing
Y
483
N
doub
N
484
N
sing
Y
485
N
doub
N
486
N
sing
Y
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
doub
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
41
9945
9955
10.1093/nar/gkt769
23980027
Crystal structure of RuvC resolvase in complex with Holliday junction substrate.
2013
10.2210/pdb4ld0/pdb
pdb_00004ld0
HIGH COVALENT GEOMETRY DEVIATION OBSERVED IN SOME OF THE RESIDUES
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2009-09-24
MARMOSAIC 225 mm CCD
horizontally side diffracting Silicon 111 crystal
SINGLE WAVELENGTH
M
x-ray
1
0.873
1.0
ID23-2
ESRF
0.873
SYNCHROTRON
ESRF BEAMLINE ID23-2
18073.135
Crossover junction endodeoxyribonuclease RuvC
3.1.22.4
RuvC
E70Q
2
man
polymer
9519.118
DNA 31-MER
1
syn
polymer
3917.559
DNA 13-MER
1
syn
polymer
3382.236
DNA 11-MER
1
syn
polymer
Holliday junction nuclease RuvC, Holliday junction resolvase RuvC
no
no
GPHMVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVQEQFFYRQ
NELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAAKEEVALMVRGILGLKEAPRPSHLADALAIALTHAFY
ARMGTAKPL
GPHMVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVQEQFFYRQ
NELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAAKEEVALMVRGILGLKEAPRPSHLADALAIALTHAFY
ARMGTAKPL
A,B
polypeptide(L)
no
no
(DC)(DA)(DA)(DT)(DC)(DG)(DG)(DC)(DT)(DT)(DT)(DG)(DA)(DC)(DC)(DT)(DT)(DT)(DG)(DG)
(DT)(DC)(DA)(DA)(DT)(DC)(DG)(DG)(DC)(DA)(DG)
CAATCGGCTTTGACCTTTGGTCAATCGGCAG
C
polydeoxyribonucleotide
no
no
(DA)(DT)(DC)(DT)(DG)(DC)(DC)(DG)(DA)(DT)(DT)(DC)(DT)
ATCTGCCGATTCT
D
polydeoxyribonucleotide
no
no
(DG)(DA)(DA)(DA)(DG)(DC)(DC)(DG)(DA)(DT)(DT)
GAAAGCCGATT
F
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HB8 / ATCC 27634 / DSM 579
sample
ruvC, TTHA1090
300852
Thermus thermophilus
562
Escherichia coli
1
4.09
69.92
VAPOR DIFFUSION, SITTING DROP
0.3-0.5 M ammonium phosphate, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
-9.868
1
20
C
2
F
32
3.332
C_DA2:DT32_F
1
-22.445
0.627
-0.068
-0.235
-2.259
1
20
C
3
F
31
1.835
C_DA3:DT31_F
2
-26.924
0.974
-0.355
-0.293
7.930
1
20
C
4
F
30
4.754
C_DT4:DA30_F
3
-25.589
-0.503
-0.614
-0.247
-13.416
1
19
C
5
F
29
-0.005
C_DC5:DG29_F
4
-10.450
1.863
0.077
-0.999
-5.993
1
19
C
6
F
28
2.342
C_DG6:DC28_F
5
-16.042
-0.091
-0.675
-0.337
-4.278
1
19
C
7
F
27
4.275
C_DG7:DC27_F
6
-20.258
-0.710
-0.313
-0.176
7.724
1
19
C
8
F
26
0.310
C_DC8:DG26_F
7
5.822
-0.482
0.566
-0.087
20.450
1
20
C
9
F
25
-2.485
C_DT9:DA25_F
8
-1.765
1.302
-0.112
-0.496
-16.651
1
20
C
10
C
24
7.021
C_DT10:DA24_C
9
-15.285
-0.725
-0.199
-0.323
-15.837
1
20
C
11
C
23
2.812
C_DT11:DA23_C
10
-6.078
-0.070
0.480
-0.450
4.353
1
19
C
12
C
22
7.430
C_DG12:DC22_C
11
-25.439
-1.939
-0.363
-0.986
-5.152
1
20
C
13
C
21
-2.781
C_DA13:DT21_C
12
-10.332
-0.024
-0.408
-0.258
20.251
1
19
C
14
C
20
-2.531
C_DC14:DG20_C
13
-8.478
-1.329
-0.063
-0.159
-14.888
1
19
C
15
C
19
5.328
C_DC15:DG19_C
14
3.069
-0.444
1.305
-0.337
-25.845
1
20
C
25
D
9
9.606
C_DT25:DA9_D
15
-15.806
-0.292
-0.230
0.127
-27.627
1
19
C
26
D
8
-2.637
C_DC26:DG8_D
16
-1.557
-0.047
0.098
-0.055
-37.551
1
19
C
27
D
7
-2.719
C_DG27:DC7_D
17
-5.659
-0.575
-0.065
-0.058
-26.653
1
19
C
28
D
6
-6.250
C_DG28:DC6_D
18
-7.386
-0.535
-0.548
-0.238
-5.774
1
19
C
29
D
5
-2.283
C_DC29:DG5_D
19
-9.772
0.113
-0.457
-0.181
-27.139
1
20
C
30
D
4
-4.228
C_DA30:DT4_D
20
-10.273
0.328
-0.462
-0.124
-19.242
1
19
C
31
D
3
2.602
C_DG31:DC3_D
21
4.472
1.118
0.495
-0.318
7.238
1
D
11
F
24
47.634
D_DT11:DA24_F
22
-0.051
0.541
1.411
0.728
30.429
1
19
D
12
F
22
-0.384
D_DC12:DG22_F
23
-1.791
1.802
-0.765
-1.164
3.123
37.186
C
C
2
3
14.498
F
F
32
31
3.201
9.147
0.222
0.027
CC_DA2DA3:DT31DT32_FF
1
3.088
-4.895
35.954
-1.156
0.056
2.576
21.850
C
C
3
4
10.077
F
F
31
30
2.819
3.800
-0.270
-1.212
CC_DA3DT4:DA30DT31_FF
2
-0.768
2.037
21.507
-4.430
0.462
3.947
50.243
C
C
4
5
2.939
F
F
30
29
3.963
2.492
0.022
0.029
CC_DT4DC5:DG29DA30_FF
3
-3.999
4.716
50.036
-0.183
-0.374
3.082
25.245
C
C
5
6
26.490
F
F
29
28
3.105
11.141
-0.409
0.893
CC_DC5DG6:DC28DG29_FF
4
3.861
-9.179
22.362
-1.225
2.069
3.147
34.221
C
C
6
7
7.348
F
F
28
27
3.086
4.310
-0.258
0.599
CC_DG6DG7:DC27DC28_FF
5
-2.192
3.737
33.887
0.367
0.107
2.860
35.171
C
C
7
8
-11.362
F
F
27
26
3.167
-6.790
0.234
0.865
CC_DG7DC8:DG26DC27_FF
6
-6.259
10.473
33.974
2.381
-1.263
2.819
36.072
C
C
8
9
14.881
F
F
26
25
2.926
9.019
0.559
-0.257
CC_DC8DT9:DA25DG26_FF
7
9.448
-15.589
33.698
-1.579
0.316
3.223
31.336
C
C
10
11
14.470
C
C
24
23
3.531
7.720
0.399
-0.545
CC_DT10DT11:DA23DA24_CC
8
-3.828
7.175
30.157
-2.541
-1.499
2.854
21.793
C
C
11
12
17.645
C
C
23
22
2.921
6.549
-0.215
0.408
CC_DT11DG12:DC22DA23_CC
9
2.966
-7.990
20.586
-1.255
1.625
3.760
48.058
C
C
12
13
1.003
C
C
22
21
3.672
0.815
-0.955
0.207
CC_DG12DA13:DT21DC22_CC
10
-5.864
7.217
47.713
0.182
0.647
2.369
22.902
C
C
13
14
9.513
C
C
21
20
2.578
3.746
0.509
-0.407
CC_DA13DC14:DG20DT21_CC
11
-3.570
9.067
22.318
-2.043
-2.252
4.009
41.973
C
C
14
15
-9.753
C
C
20
19
4.305
-6.920
1.505
-0.584
CC_DC14DC15:DG19DG20_CC
12
-7.731
10.897
40.727
0.114
-3.140
3.200
34.189
C
C
25
26
44.273
D
D
9
8
3.712
23.590
-0.763
0.618
CC_DT25DC26:DG8DA9_DD
13
-4.688
8.797
24.479
-3.591
0.376
4.095
35.915
C
C
26
27
-1.054
D
D
8
7
3.968
-0.646
-1.157
0.894
CC_DC26DG27:DC7DG8_DD
14
-6.669
10.876
35.305
1.565
0.691
3.446
37.611
C
C
27
28
4.212
D
D
7
6
3.355
2.711
-0.889
0.674
CC_DG27DG28:DC6DC7_DD
15
-2.622
4.074
37.429
0.677
1.023
2.786
35.475
C
C
28
29
4.054
D
D
6
5
2.814
2.467
0.647
0.174
CC_DG28DC29:DG5DC6_DD
16
-1.700
2.793
35.352
-0.024
-1.275
3.512
36.173
C
C
29
30
21.087
D
D
5
4
3.921
12.792
-0.354
-0.532
CC_DC29DA30:DT4DG5_DD
17
-4.576
7.543
33.604
-2.985
-0.191
2.907
39.065
C
C
30
31
6.972
D
D
4
3
3.035
4.639
-0.088
-0.831
CC_DA30DG31:DC3DT4_DD
18
-5.153
7.744
38.468
-1.754
-0.436
4.805
74.545
D
D
11
12
9.442
F
F
24
22
4.566
11.403
1.051
2.206
DD_DT11DC12:DG22DA24_FF
19
-0.902
0.747
73.788
1.311
-0.908
software
chem_comp_atom
chem_comp_bond
database_2
struct_ncs_dom_lim
struct_ref_seq_dif
repository
Initial release
Database references
Database references
Refinement description
Data collection
Database references
Refinement description
1
0
2013-09-04
1
1
2013-09-18
1
2
2013-12-04
1
3
2017-11-15
1
4
2024-02-28
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2013-06-24
REL
REL
synthetic DNA
sample
synthetic DNA
sample
synthetic DNA
sample
n
1
-2
A
n
2
-1
A
n
3
0
A
MET
1
n
4
MET
1
A
VAL
2
n
5
VAL
2
A
VAL
3
n
6
VAL
3
A
ALA
4
n
7
ALA
4
A
GLY
5
n
8
GLY
5
A
ILE
6
n
9
ILE
6
A
ASP
7
n
10
ASP
7
A
PRO
8
n
11
PRO
8
A
GLY
9
n
12
GLY
9
A
ILE
10
n
13
ILE
10
A
THR
11
n
14
THR
11
A
HIS
12
n
15
HIS
12
A
LEU
13
n
16
LEU
13
A
GLY
14
n
17
GLY
14
A
LEU
15
n
18
LEU
15
A
GLY
16
n
19
GLY
16
A
VAL
17
n
20
VAL
17
A
VAL
18
n
21
VAL
18
A
ALA
19
n
22
ALA
19
A
VAL
20
n
23
VAL
20
A
GLU
21
n
24
GLU
21
A
n
25
22
A
n
26
23
A
GLY
24
n
27
GLY
24
A
ALA
25
n
28
ALA
25
A
LEU
26
n
29
LEU
26
A
LYS
27
n
30
LYS
27
A
ALA
28
n
31
ALA
28
A
ARG
29
n
32
ARG
29
A
LEU
30
n
33
LEU
30
A
LEU
31
n
34
LEU
31
A
HIS
32
n
35
HIS
32
A
GLY
33
n
36
GLY
33
A
GLU
34
n
37
GLU
34
A
VAL
35
n
38
VAL
35
A
VAL
36
n
39
VAL
36
A
LYS
37
n
40
LYS
37
A
THR
38
n
41
THR
38
A
SER
39
n
42
SER
39
A
PRO
40
n
43
PRO
40
A
GLN
41
n
44
GLN
41
A
GLU
42
n
45
GLU
42
A
PRO
43
n
46
PRO
43
A
ALA
44
n
47
ALA
44
A
LYS
45
n
48
LYS
45
A
GLU
46
n
49
GLU
46
A
ARG
47
n
50
ARG
47
A
VAL
48
n
51
VAL
48
A
GLY
49
n
52
GLY
49
A
ARG
50
n
53
ARG
50
A
ILE
51
n
54
ILE
51
A
HIS
52
n
55
HIS
52
A
ALA
53
n
56
ALA
53
A
ARG
54
n
57
ARG
54
A
VAL
55
n
58
VAL
55
A
LEU
56
n
59
LEU
56
A
GLU
57
n
60
GLU
57
A
VAL
58
n
61
VAL
58
A
LEU
59
n
62
LEU
59
A
HIS
60
n
63
HIS
60
A
ARG
61
n
64
ARG
61
A
PHE
62
n
65
PHE
62
A
ARG
63
n
66
ARG
63
A
PRO
64
n
67
PRO
64
A
GLU
65
n
68
GLU
65
A
ALA
66
n
69
ALA
66
A
VAL
67
n
70
VAL
67
A
ALA
68
n
71
ALA
68
A
VAL
69
n
72
VAL
69
A
GLN
70
n
73
GLN
70
A
GLU
71
n
74
GLU
71
A
GLN
72
n
75
GLN
72
A
PHE
73
n
76
PHE
73
A
PHE
74
n
77
PHE
74
A
TYR
75
n
78
TYR
75
A
ARG
76
n
79
ARG
76
A
GLN
77
n
80
GLN
77
A
ASN
78
n
81
ASN
78
A
GLU
79
n
82
GLU
79
A
LEU
80
n
83
LEU
80
A
ALA
81
n
84
ALA
81
A
TYR
82
n
85
TYR
82
A
LYS
83
n
86
LYS
83
A
VAL
84
n
87
VAL
84
A
GLY
85
n
88
GLY
85
A
TRP
86
n
89
TRP
86
A
ALA
87
n
90
ALA
87
A
LEU
88
n
91
LEU
88
A
GLY
89
n
92
GLY
89
A
ALA
90
n
93
ALA
90
A
VAL
91
n
94
VAL
91
A
LEU
92
n
95
LEU
92
A
VAL
93
n
96
VAL
93
A
ALA
94
n
97
ALA
94
A
ALA
95
n
98
ALA
95
A
PHE
96
n
99
PHE
96
A
GLU
97
n
100
GLU
97
A
ALA
98
n
101
ALA
98
A
GLY
99
n
102
GLY
99
A
VAL
100
n
103
VAL
100
A
PRO
101
n
104
PRO
101
A
VAL
102
n
105
VAL
102
A
TYR
103
n
106
TYR
103
A
ALA
104
n
107
ALA
104
A
TYR
105
n
108
TYR
105
A
GLY
106
n
109
GLY
106
A
PRO
107
n
110
PRO
107
A
MET
108
n
111
MET
108
A
GLN
109
n
112
GLN
109
A
VAL
110
n
113
VAL
110
A
LYS
111
n
114
LYS
111
A
GLN
112
n
115
GLN
112
A
ALA
113
n
116
ALA
113
A
LEU
114
n
117
LEU
114
A
ALA
115
n
118
ALA
115
A
n
119
116
A
n
120
117
A
n
121
118
A
n
122
119
A
n
123
120
A
n
124
121
A
LYS
122
n
125
LYS
122
A
GLU
123
n
126
GLU
123
A
GLU
124
n
127
GLU
124
A
VAL
125
n
128
VAL
125
A
ALA
126
n
129
ALA
126
A
LEU
127
n
130
LEU
127
A
MET
128
n
131
MET
128
A
VAL
129
n
132
VAL
129
A
ARG
130
n
133
ARG
130
A
GLY
131
n
134
GLY
131
A
ILE
132
n
135
ILE
132
A
LEU
133
n
136
LEU
133
A
GLY
134
n
137
GLY
134
A
LEU
135
n
138
LEU
135
A
LYS
136
n
139
LYS
136
A
GLU
137
n
140
GLU
137
A
ALA
138
n
141
ALA
138
A
PRO
139
n
142
PRO
139
A
ARG
140
n
143
ARG
140
A
PRO
141
n
144
PRO
141
A
SER
142
n
145
SER
142
A
HIS
143
n
146
HIS
143
A
LEU
144
n
147
LEU
144
A
ALA
145
n
148
ALA
145
A
ASP
146
n
149
ASP
146
A
ALA
147
n
150
ALA
147
A
LEU
148
n
151
LEU
148
A
ALA
149
n
152
ALA
149
A
ILE
150
n
153
ILE
150
A
ALA
151
n
154
ALA
151
A
LEU
152
n
155
LEU
152
A
THR
153
n
156
THR
153
A
HIS
154
n
157
HIS
154
A
ALA
155
n
158
ALA
155
A
PHE
156
n
159
PHE
156
A
TYR
157
n
160
TYR
157
A
ALA
158
n
161
ALA
158
A
ARG
159
n
162
ARG
159
A
MET
160
n
163
MET
160
A
GLY
161
n
164
GLY
161
A
THR
162
n
165
THR
162
A
ALA
163
n
166
ALA
163
A
LYS
164
n
167
LYS
164
A
PRO
165
n
168
PRO
165
A
LEU
166
n
169
LEU
166
A
n
1
-2
B
n
2
-1
B
HIS
0
n
3
HIS
0
B
MET
1
n
4
MET
1
B
VAL
2
n
5
VAL
2
B
VAL
3
n
6
VAL
3
B
ALA
4
n
7
ALA
4
B
GLY
5
n
8
GLY
5
B
ILE
6
n
9
ILE
6
B
ASP
7
n
10
ASP
7
B
PRO
8
n
11
PRO
8
B
GLY
9
n
12
GLY
9
B
ILE
10
n
13
ILE
10
B
THR
11
n
14
THR
11
B
HIS
12
n
15
HIS
12
B
LEU
13
n
16
LEU
13
B
GLY
14
n
17
GLY
14
B
LEU
15
n
18
LEU
15
B
GLY
16
n
19
GLY
16
B
VAL
17
n
20
VAL
17
B
VAL
18
n
21
VAL
18
B
ALA
19
n
22
ALA
19
B
VAL
20
n
23
VAL
20
B
n
24
21
B
n
25
22
B
n
26
23
B
n
27
24
B
n
28
25
B
LEU
26
n
29
LEU
26
B
LYS
27
n
30
LYS
27
B
ALA
28
n
31
ALA
28
B
ARG
29
n
32
ARG
29
B
LEU
30
n
33
LEU
30
B
LEU
31
n
34
LEU
31
B
HIS
32
n
35
HIS
32
B
GLY
33
n
36
GLY
33
B
GLU
34
n
37
GLU
34
B
VAL
35
n
38
VAL
35
B
VAL
36
n
39
VAL
36
B
LYS
37
n
40
LYS
37
B
THR
38
n
41
THR
38
B
SER
39
n
42
SER
39
B
PRO
40
n
43
PRO
40
B
GLN
41
n
44
GLN
41
B
GLU
42
n
45
GLU
42
B
PRO
43
n
46
PRO
43
B
ALA
44
n
47
ALA
44
B
LYS
45
n
48
LYS
45
B
GLU
46
n
49
GLU
46
B
ARG
47
n
50
ARG
47
B
VAL
48
n
51
VAL
48
B
GLY
49
n
52
GLY
49
B
ARG
50
n
53
ARG
50
B
ILE
51
n
54
ILE
51
B
HIS
52
n
55
HIS
52
B
ALA
53
n
56
ALA
53
B
ARG
54
n
57
ARG
54
B
VAL
55
n
58
VAL
55
B
LEU
56
n
59
LEU
56
B
GLU
57
n
60
GLU
57
B
VAL
58
n
61
VAL
58
B
LEU
59
n
62
LEU
59
B
HIS
60
n
63
HIS
60
B
ARG
61
n
64
ARG
61
B
PHE
62
n
65
PHE
62
B
ARG
63
n
66
ARG
63
B
PRO
64
n
67
PRO
64
B
GLU
65
n
68
GLU
65
B
ALA
66
n
69
ALA
66
B
VAL
67
n
70
VAL
67
B
ALA
68
n
71
ALA
68
B
VAL
69
n
72
VAL
69
B
GLN
70
n
73
GLN
70
B
GLU
71
n
74
GLU
71
B
GLN
72
n
75
GLN
72
B
PHE
73
n
76
PHE
73
B
PHE
74
n
77
PHE
74
B
TYR
75
n
78
TYR
75
B
ARG
76
n
79
ARG
76
B
GLN
77
n
80
GLN
77
B
ASN
78
n
81
ASN
78
B
GLU
79
n
82
GLU
79
B
LEU
80
n
83
LEU
80
B
ALA
81
n
84
ALA
81
B
TYR
82
n
85
TYR
82
B
LYS
83
n
86
LYS
83
B
VAL
84
n
87
VAL
84
B
GLY
85
n
88
GLY
85
B
TRP
86
n
89
TRP
86
B
ALA
87
n
90
ALA
87
B
LEU
88
n
91
LEU
88
B
GLY
89
n
92
GLY
89
B
ALA
90
n
93
ALA
90
B
VAL
91
n
94
VAL
91
B
LEU
92
n
95
LEU
92
B
VAL
93
n
96
VAL
93
B
ALA
94
n
97
ALA
94
B
ALA
95
n
98
ALA
95
B
PHE
96
n
99
PHE
96
B
GLU
97
n
100
GLU
97
B
ALA
98
n
101
ALA
98
B
GLY
99
n
102
GLY
99
B
VAL
100
n
103
VAL
100
B
PRO
101
n
104
PRO
101
B
VAL
102
n
105
VAL
102
B
TYR
103
n
106
TYR
103
B
ALA
104
n
107
ALA
104
B
TYR
105
n
108
TYR
105
B
GLY
106
n
109
GLY
106
B
PRO
107
n
110
PRO
107
B
MET
108
n
111
MET
108
B
GLN
109
n
112
GLN
109
B
VAL
110
n
113
VAL
110
B
LYS
111
n
114
LYS
111
B
GLN
112
n
115
GLN
112
B
ALA
113
n
116
ALA
113
B
LEU
114
n
117
LEU
114
B
ALA
115
n
118
ALA
115
B
n
119
116
B
n
120
117
B
n
121
118
B
n
122
119
B
n
123
120
B
ALA
121
n
124
ALA
121
B
LYS
122
n
125
LYS
122
B
GLU
123
n
126
GLU
123
B
GLU
124
n
127
GLU
124
B
VAL
125
n
128
VAL
125
B
ALA
126
n
129
ALA
126
B
LEU
127
n
130
LEU
127
B
MET
128
n
131
MET
128
B
VAL
129
n
132
VAL
129
B
ARG
130
n
133
ARG
130
B
GLY
131
n
134
GLY
131
B
ILE
132
n
135
ILE
132
B
LEU
133
n
136
LEU
133
B
GLY
134
n
137
GLY
134
B
LEU
135
n
138
LEU
135
B
LYS
136
n
139
LYS
136
B
GLU
137
n
140
GLU
137
B
ALA
138
n
141
ALA
138
B
PRO
139
n
142
PRO
139
B
ARG
140
n
143
ARG
140
B
PRO
141
n
144
PRO
141
B
SER
142
n
145
SER
142
B
HIS
143
n
146
HIS
143
B
LEU
144
n
147
LEU
144
B
ALA
145
n
148
ALA
145
B
ASP
146
n
149
ASP
146
B
ALA
147
n
150
ALA
147
B
LEU
148
n
151
LEU
148
B
ALA
149
n
152
ALA
149
B
ILE
150
n
153
ILE
150
B
ALA
151
n
154
ALA
151
B
LEU
152
n
155
LEU
152
B
THR
153
n
156
THR
153
B
HIS
154
n
157
HIS
154
B
ALA
155
n
158
ALA
155
B
PHE
156
n
159
PHE
156
B
TYR
157
n
160
TYR
157
B
ALA
158
n
161
ALA
158
B
ARG
159
n
162
ARG
159
B
MET
160
n
163
MET
160
B
GLY
161
n
164
GLY
161
B
THR
162
n
165
THR
162
B
ALA
163
n
166
ALA
163
B
LYS
164
n
167
LYS
164
B
PRO
165
n
168
PRO
165
B
LEU
166
n
169
LEU
166
B
DC
1
n
1
DC
1
C
DA
2
n
2
DA
2
C
DA
3
n
3
DA
3
C
DT
4
n
4
DT
4
C
DC
5
n
5
DC
5
C
DG
6
n
6
DG
6
C
DG
7
n
7
DG
7
C
DC
8
n
8
DC
8
C
DT
9
n
9
DT
9
C
DT
10
n
10
DT
10
C
DT
11
n
11
DT
11
C
DG
12
n
12
DG
12
C
DA
13
n
13
DA
13
C
DC
14
n
14
DC
14
C
DC
15
n
15
DC
15
C
DT
16
n
16
DT
16
C
DT
17
n
17
DT
17
C
DT
18
n
18
DT
18
C
DG
19
n
19
DG
19
C
DG
20
n
20
DG
20
C
DT
21
n
21
DT
21
C
DC
22
n
22
DC
22
C
DA
23
n
23
DA
23
C
DA
24
n
24
DA
24
C
DT
25
n
25
DT
25
C
DC
26
n
26
DC
26
C
DG
27
n
27
DG
27
C
DG
28
n
28
DG
28
C
DC
29
n
29
DC
29
C
DA
30
n
30
DA
30
C
DG
31
n
31
DG
31
C
DA
1
n
1
DA
1
D
DT
2
n
2
DT
2
D
DC
3
n
3
DC
3
D
DT
4
n
4
DT
4
D
DG
5
n
5
DG
5
D
DC
6
n
6
DC
6
D
DC
7
n
7
DC
7
D
DG
8
n
8
DG
8
D
DA
9
n
9
DA
9
D
DT
10
n
10
DT
10
D
DT
11
n
11
DT
11
D
DC
12
n
12
DC
12
D
DT
13
n
13
DT
13
D
DG
22
n
1
DG
22
F
DA
23
n
2
DA
23
F
DA
24
n
3
DA
24
F
DA
25
n
4
DA
25
F
DG
26
n
5
DG
26
F
DC
27
n
6
DC
27
F
DC
28
n
7
DC
28
F
DG
29
n
8
DG
29
F
DA
30
n
9
DA
30
F
DT
31
n
10
DT
31
F
DT
32
n
11
DT
32
F
author_and_software_defined_assembly
PISA
5
pentameric
7160
-62
22740
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
34
A
O
GLU
37
A
N
LEU
15
A
N
LEU
18
A
O
VAL
18
A
O
VAL
21
A
N
VAL
3
A
N
VAL
6
A
N
ALA
4
A
N
ALA
7
A
O
ALA
68
A
O
ALA
71
A
N
VAL
67
A
N
VAL
70
A
O
TYR
103
A
O
TYR
106
B
O
LEU
31
B
O
LEU
34
B
N
VAL
17
B
N
VAL
20
B
O
VAL
20
B
O
VAL
23
B
N
MET
1
B
N
MET
4
B
N
ALA
4
B
N
ALA
7
B
O
ALA
68
B
O
ALA
71
B
N
VAL
67
B
N
VAL
70
B
O
TYR
103
B
O
TYR
106
1
A
CG1
VAL
55
A
CG1
VAL
58
1
Y
1
A
CG2
VAL
55
A
CG2
VAL
58
1
Y
1
A
CZ
ARG
63
A
CZ
ARG
66
1
Y
1
A
NH1
ARG
63
A
NH1
ARG
66
1
Y
1
A
NH2
ARG
63
A
NH2
ARG
66
1
Y
1
A
CG
GLU
71
A
CG
GLU
74
1
Y
1
A
CD
GLU
71
A
CD
GLU
74
1
Y
1
A
OE1
GLU
71
A
OE1
GLU
74
1
Y
1
A
OE2
GLU
71
A
OE2
GLU
74
1
Y
1
A
CG
PHE
73
A
CG
PHE
76
1
Y
1
A
CD1
PHE
73
A
CD1
PHE
76
1
Y
1
A
CD2
PHE
73
A
CD2
PHE
76
1
Y
1
A
CE1
PHE
73
A
CE1
PHE
76
1
Y
1
A
CE2
PHE
73
A
CE2
PHE
76
1
Y
1
A
CZ
PHE
73
A
CZ
PHE
76
1
Y
1
A
CG
PHE
74
A
CG
PHE
77
1
Y
1
A
CD1
PHE
74
A
CD1
PHE
77
1
Y
1
A
CD2
PHE
74
A
CD2
PHE
77
1
Y
1
A
CE1
PHE
74
A
CE1
PHE
77
1
Y
1
A
CE2
PHE
74
A
CE2
PHE
77
1
Y
1
A
CZ
PHE
74
A
CZ
PHE
77
1
Y
1
A
CG
ARG
76
A
CG
ARG
79
1
Y
1
A
CD
ARG
76
A
CD
ARG
79
1
Y
1
A
NE
ARG
76
A
NE
ARG
79
1
Y
1
A
CZ
ARG
76
A
CZ
ARG
79
1
Y
1
A
NH1
ARG
76
A
NH1
ARG
79
1
Y
1
A
NH2
ARG
76
A
NH2
ARG
79
1
Y
1
A
CG
GLN
77
A
CG
GLN
80
1
Y
1
A
CD
GLN
77
A
CD
GLN
80
1
Y
1
A
OE1
GLN
77
A
OE1
GLN
80
1
Y
1
A
NE2
GLN
77
A
NE2
GLN
80
1
Y
1
A
CG
LEU
88
A
CG
LEU
91
1
Y
1
A
CD1
LEU
88
A
CD1
LEU
91
1
Y
1
A
CD2
LEU
88
A
CD2
LEU
91
1
Y
1
A
CG1
VAL
110
A
CG1
VAL
113
1
Y
1
A
CG2
VAL
110
A
CG2
VAL
113
1
Y
1
A
CG
LYS
122
A
CG
LYS
125
1
Y
1
A
CD
LYS
122
A
CD
LYS
125
1
Y
1
A
CE
LYS
122
A
CE
LYS
125
1
Y
1
A
NZ
LYS
122
A
NZ
LYS
125
1
Y
1
A
CG
ARG
159
A
CG
ARG
162
1
Y
1
A
CD
ARG
159
A
CD
ARG
162
1
Y
1
A
NE
ARG
159
A
NE
ARG
162
1
Y
1
A
CZ
ARG
159
A
CZ
ARG
162
1
Y
1
A
NH1
ARG
159
A
NH1
ARG
162
1
Y
1
A
NH2
ARG
159
A
NH2
ARG
162
1
Y
1
A
CG
LEU
166
A
CG
LEU
169
1
Y
1
A
CD1
LEU
166
A
CD1
LEU
169
1
Y
1
A
CD2
LEU
166
A
CD2
LEU
169
1
Y
1
B
CG
HIS
0
B
CG
HIS
3
1
Y
1
B
ND1
HIS
0
B
ND1
HIS
3
1
Y
1
B
CD2
HIS
0
B
CD2
HIS
3
1
Y
1
B
CE1
HIS
0
B
CE1
HIS
3
1
Y
1
B
NE2
HIS
0
B
NE2
HIS
3
1
Y
1
B
CG1
VAL
3
B
CG1
VAL
6
1
Y
1
B
CG2
VAL
3
B
CG2
VAL
6
1
Y
1
B
CG
LEU
15
B
CG
LEU
18
1
Y
1
B
CD1
LEU
15
B
CD1
LEU
18
1
Y
1
B
CD2
LEU
15
B
CD2
LEU
18
1
Y
1
B
CG1
VAL
18
B
CG1
VAL
21
1
Y
1
B
CG2
VAL
18
B
CG2
VAL
21
1
Y
1
B
CG
LEU
26
B
CG
LEU
29
1
Y
1
B
CD1
LEU
26
B
CD1
LEU
29
1
Y
1
B
CD2
LEU
26
B
CD2
LEU
29
1
Y
1
B
CG1
VAL
35
B
CG1
VAL
38
1
Y
1
B
CG2
VAL
35
B
CG2
VAL
38
1
Y
1
B
CG
LEU
59
B
CG
LEU
62
1
Y
1
B
CD1
LEU
59
B
CD1
LEU
62
1
Y
1
B
CD2
LEU
59
B
CD2
LEU
62
1
Y
1
B
CG
ARG
61
B
CG
ARG
64
1
Y
1
B
CD
ARG
61
B
CD
ARG
64
1
Y
1
B
NE
ARG
61
B
NE
ARG
64
1
Y
1
B
CZ
ARG
61
B
CZ
ARG
64
1
Y
1
B
NH1
ARG
61
B
NH1
ARG
64
1
Y
1
B
NH2
ARG
61
B
NH2
ARG
64
1
Y
1
B
CG
ARG
63
B
CG
ARG
66
1
Y
1
B
CD
ARG
63
B
CD
ARG
66
1
Y
1
B
NE
ARG
63
B
NE
ARG
66
1
Y
1
B
CZ
ARG
63
B
CZ
ARG
66
1
Y
1
B
NH1
ARG
63
B
NH1
ARG
66
1
Y
1
B
NH2
ARG
63
B
NH2
ARG
66
1
Y
1
B
CG
GLU
65
B
CG
GLU
68
1
Y
1
B
CD
GLU
65
B
CD
GLU
68
1
Y
1
B
OE1
GLU
65
B
OE1
GLU
68
1
Y
1
B
OE2
GLU
65
B
OE2
GLU
68
1
Y
1
B
CG
GLU
71
B
CG
GLU
74
1
Y
1
B
CD
GLU
71
B
CD
GLU
74
1
Y
1
B
OE1
GLU
71
B
OE1
GLU
74
1
Y
1
B
OE2
GLU
71
B
OE2
GLU
74
1
Y
1
B
CG
GLN
72
B
CG
GLN
75
1
Y
1
B
CD
GLN
72
B
CD
GLN
75
1
Y
1
B
OE1
GLN
72
B
OE1
GLN
75
1
Y
1
B
NE2
GLN
72
B
NE2
GLN
75
1
Y
1
B
CG
PHE
74
B
CG
PHE
77
1
Y
1
B
CD1
PHE
74
B
CD1
PHE
77
1
Y
1
B
CD2
PHE
74
B
CD2
PHE
77
1
Y
1
B
CE1
PHE
74
B
CE1
PHE
77
1
Y
1
B
CE2
PHE
74
B
CE2
PHE
77
1
Y
1
B
CZ
PHE
74
B
CZ
PHE
77
1
Y
1
B
CG
TYR
75
B
CG
TYR
78
1
Y
1
B
CD1
TYR
75
B
CD1
TYR
78
1
Y
1
B
CD2
TYR
75
B
CD2
TYR
78
1
Y
1
B
CE1
TYR
75
B
CE1
TYR
78
1
Y
1
B
CE2
TYR
75
B
CE2
TYR
78
1
Y
1
B
CZ
TYR
75
B
CZ
TYR
78
1
Y
1
B
OH
TYR
75
B
OH
TYR
78
1
Y
1
B
CG
ARG
76
B
CG
ARG
79
1
Y
1
B
CD
ARG
76
B
CD
ARG
79
1
Y
1
B
NE
ARG
76
B
NE
ARG
79
1
Y
1
B
CZ
ARG
76
B
CZ
ARG
79
1
Y
1
B
NH1
ARG
76
B
NH1
ARG
79
1
Y
1
B
NH2
ARG
76
B
NH2
ARG
79
1
Y
1
B
CG
ASN
78
B
CG
ASN
81
1
Y
1
B
OD1
ASN
78
B
OD1
ASN
81
1
Y
1
B
ND2
ASN
78
B
ND2
ASN
81
1
Y
1
B
CG
TYR
82
B
CG
TYR
85
1
Y
1
B
CD1
TYR
82
B
CD1
TYR
85
1
Y
1
B
CD2
TYR
82
B
CD2
TYR
85
1
Y
1
B
CE1
TYR
82
B
CE1
TYR
85
1
Y
1
B
CE2
TYR
82
B
CE2
TYR
85
1
Y
1
B
CZ
TYR
82
B
CZ
TYR
85
1
Y
1
B
OH
TYR
82
B
OH
TYR
85
1
Y
1
B
CG
TRP
86
B
CG
TRP
89
1
Y
1
B
CD1
TRP
86
B
CD1
TRP
89
1
Y
1
B
CD2
TRP
86
B
CD2
TRP
89
1
Y
1
B
NE1
TRP
86
B
NE1
TRP
89
1
Y
1
B
CE2
TRP
86
B
CE2
TRP
89
1
Y
1
B
CE3
TRP
86
B
CE3
TRP
89
1
Y
1
B
CZ2
TRP
86
B
CZ2
TRP
89
1
Y
1
B
CZ3
TRP
86
B
CZ3
TRP
89
1
Y
1
B
CH2
TRP
86
B
CH2
TRP
89
1
Y
1
B
CG
GLU
123
B
CG
GLU
126
1
Y
1
B
CD
GLU
123
B
CD
GLU
126
1
Y
1
B
OE1
GLU
123
B
OE1
GLU
126
1
Y
1
B
OE2
GLU
123
B
OE2
GLU
126
1
Y
1
B
CG
LEU
127
B
CG
LEU
130
1
Y
1
B
CD1
LEU
127
B
CD1
LEU
130
1
Y
1
B
CD2
LEU
127
B
CD2
LEU
130
1
Y
1
B
CG1
VAL
129
B
CG1
VAL
132
1
Y
1
B
CG2
VAL
129
B
CG2
VAL
132
1
Y
1
B
CG
LEU
144
B
CG
LEU
147
1
Y
1
B
CD1
LEU
144
B
CD1
LEU
147
1
Y
1
B
CD2
LEU
144
B
CD2
LEU
147
1
Y
1
B
CG
LEU
148
B
CG
LEU
151
1
Y
1
B
CD1
LEU
148
B
CD1
LEU
151
1
Y
1
B
CD2
LEU
148
B
CD2
LEU
151
1
Y
1
B
CG
LEU
152
B
CG
LEU
155
1
Y
1
B
CD1
LEU
152
B
CD1
LEU
155
1
Y
1
B
CD2
LEU
152
B
CD2
LEU
155
1
Y
1
B
CG
ARG
159
B
CG
ARG
162
1
Y
1
B
CD
ARG
159
B
CD
ARG
162
1
Y
1
B
NE
ARG
159
B
NE
ARG
162
1
Y
1
B
CZ
ARG
159
B
CZ
ARG
162
1
Y
1
B
NH1
ARG
159
B
NH1
ARG
162
1
Y
1
B
NH2
ARG
159
B
NH2
ARG
162
1
Y
1
B
CG
LEU
166
B
CG
LEU
169
1
Y
1
B
CD1
LEU
166
B
CD1
LEU
169
1
Y
1
B
CD2
LEU
166
B
CD2
LEU
169
1
Y
1
A
GLY
-2
A
GLY
1
1
Y
1
A
PRO
-1
A
PRO
2
1
Y
1
A
HIS
0
A
HIS
3
1
Y
1
A
GLY
22
A
GLY
25
1
Y
1
A
LYS
23
A
LYS
26
1
Y
1
A
GLY
116
A
GLY
119
1
Y
1
A
HIS
117
A
HIS
120
1
Y
1
A
GLY
118
A
GLY
121
1
Y
1
A
HIS
119
A
HIS
122
1
Y
1
A
ALA
120
A
ALA
123
1
Y
1
A
ALA
121
A
ALA
124
1
Y
1
B
GLY
-2
B
GLY
1
1
Y
1
B
PRO
-1
B
PRO
2
1
Y
1
B
GLU
21
B
GLU
24
1
Y
1
B
GLY
22
B
GLY
25
1
Y
1
B
LYS
23
B
LYS
26
1
Y
1
B
GLY
24
B
GLY
27
1
Y
1
B
ALA
25
B
ALA
28
1
Y
1
B
GLY
116
B
GLY
119
1
Y
1
B
HIS
117
B
HIS
120
1
Y
1
B
GLY
118
B
GLY
121
1
Y
1
B
HIS
119
B
HIS
122
1
Y
1
B
ALA
120
B
ALA
123
1
Y
1
D
F
N3
O6
DC
DG
12
22
2.18
1
31.09
2.30
111.70
142.79
A
A
A
CD
CE
NZ
LYS
LYS
LYS
37
37
37
N
1
33.79
2.30
111.70
145.49
A
A
A
CD
CE
NZ
LYS
LYS
LYS
45
45
45
N
1
14.39
2.10
111.80
126.19
A
A
A
CG
CD
NE
ARG
ARG
ARG
54
54
54
N
1
35.68
1.60
100.20
135.88
A
A
A
CG
SD
CE
MET
MET
MET
128
128
128
N
1
28.68
2.30
111.70
140.38
B
B
B
CD
CE
NZ
LYS
LYS
LYS
37
37
37
N
1
35.72
2.30
111.70
147.42
B
B
B
CD
CE
NZ
LYS
LYS
LYS
45
45
45
N
1
11.22
1.60
110.90
122.12
B
B
B
CG1
CB
CG2
VAL
VAL
VAL
48
48
48
N
1
35.15
1.60
100.20
135.35
B
B
B
CG
SD
CE
MET
MET
MET
128
128
128
N
1
4.64
0.30
108.30
112.94
C
C
C
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
3.66
0.30
108.30
111.96
C
C
C
O4'
C1'
N9
DA
DA
DA
13
13
13
N
1
4.54
0.30
108.30
112.84
C
C
C
O4'
C1'
N1
DC
DC
DC
14
14
14
N
1
-5.05
0.40
104.50
99.45
C
C
C
O4'
C4'
C3'
DC
DC
DC
15
15
15
N
1
4.36
0.30
108.30
112.66
C
C
C
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
2.08
0.30
108.30
110.38
C
C
C
O4'
C1'
N9
DA
DA
DA
23
23
23
N
1
2.54
0.30
108.30
110.84
C
C
C
O4'
C1'
N9
DA
DA
DA
24
24
24
N
1
2.75
0.30
108.30
111.05
C
C
C
O4'
C1'
N1
DT
DT
DT
25
25
25
N
1
2.65
0.30
108.30
110.95
D
D
D
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
1.87
0.30
108.30
110.17
D
D
D
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
2.69
0.30
108.30
110.99
D
D
D
O4'
C1'
N9
DA
DA
DA
9
9
9
N
1
-5.82
0.80
102.40
96.58
F
F
F
C3'
C2'
C1'
DG
DG
DG
22
22
22
N
1
-5.88
0.80
102.40
96.52
F
F
F
C3'
C2'
C1'
DG
DG
DG
29
29
29
N
1
2.45
0.30
108.30
110.75
F
F
F
O4'
C1'
N9
DG
DG
DG
29
29
29
N
1
A
C
NH1
OP1
ARG
DG
61
20
2.16
1_555
4_655
1
A
ASN
78
-29.89
-34.85
1
A
THR
162
-106.06
66.56
1
A
PRO
165
-65.06
-175.46
1
B
ASN
78
-31.15
-34.10
1
B
THR
162
-106.55
66.48
1
B
PRO
165
-68.64
-153.61
0.3293
0.2668
0.2699
3.75
46.053
464
9255
5.01
99.80
0.55
1
2.02
MOLECULAR REPLACEMENT
38.22
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
3.75
46.053
0
3361
0
1118
2243
0.017
3586
1.952
5026
25.306
1333
0.089
584
0.010
457
1
A
1
874
X-RAY DIFFRACTION
TORSIONAL
0.095
2
B
1
874
X-RAY DIFFRACTION
TORSIONAL
0.095
1
A
2
1054
X-RAY DIFFRACTION
TORSIONAL
0.095
2
B
2
1054
X-RAY DIFFRACTION
TORSIONAL
0.095
0.3205
0.2752
4.2933
151
2871
100.00
0.3600
0.3020
5.4078
154
2910
100.00
0.3192
0.2496
46.0569
159
3010
100.00
3.7
50
4LD0
9622
9622
2.2
2.2
1
99.5
3.7
3.96
1
97.7
data collection
MAR345
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.8.2_1309)
data reduction
XDS
data scaling
XDS
T. thermophilus RuvC in complex with Holliday junction substrate
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
A
PRO
43
A
PRO
46
HELX_P
A
ARG
63
A
ARG
66
1
1
21
A
GLN
77
A
GLN
80
HELX_P
A
GLY
99
A
GLY
102
1
2
23
A
GLY
106
A
GLY
109
HELX_P
A
ALA
115
A
ALA
118
1
3
10
A
GLU
123
A
GLU
126
HELX_P
A
LEU
133
A
LEU
136
1
4
11
A
PRO
141
A
PRO
144
HELX_P
A
MET
160
A
MET
163
1
5
20
B
PRO
43
B
PRO
46
HELX_P
B
ARG
63
B
ARG
66
1
6
21
B
GLN
77
B
GLN
80
HELX_P
B
GLY
99
B
GLY
102
1
7
23
B
GLY
106
B
GLY
109
HELX_P
B
ALA
115
B
ALA
118
1
8
10
B
LYS
122
B
LYS
125
HELX_P
B
LEU
133
B
LEU
136
1
9
12
B
PRO
141
B
PRO
144
HELX_P
B
MET
160
B
MET
163
1
10
20
hydrog
WATSON-CRICK
C
DA
2
C
N1
DA
2
1_555
F
DT
32
E
N3
DT
11
1_555
hydrog
WATSON-CRICK
C
DA
2
C
N6
DA
2
1_555
F
DT
32
E
O4
DT
11
1_555
hydrog
WATSON-CRICK
C
DA
3
C
N1
DA
3
1_555
F
DT
31
E
N3
DT
10
1_555
hydrog
WATSON-CRICK
C
DA
3
C
N6
DA
3
1_555
F
DT
31
E
O4
DT
10
1_555
hydrog
WATSON-CRICK
C
DT
4
C
N3
DT
4
1_555
F
DA
30
E
N1
DA
9
1_555
hydrog
WATSON-CRICK
C
DT
4
C
O4
DT
4
1_555
F
DA
30
E
N6
DA
9
1_555
hydrog
WATSON-CRICK
C
DC
5
C
N3
DC
5
1_555
F
DG
29
E
N1
DG
8
1_555
hydrog
WATSON-CRICK
C
DC
5
C
N4
DC
5
1_555
F
DG
29
E
O6
DG
8
1_555
hydrog
WATSON-CRICK
C
DC
5
C
O2
DC
5
1_555
F
DG
29
E
N2
DG
8
1_555
hydrog
WATSON-CRICK
C
DG
6
C
N1
DG
6
1_555
F
DC
28
E
N3
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
6
C
N2
DG
6
1_555
F
DC
28
E
O2
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
6
C
O6
DG
6
1_555
F
DC
28
E
N4
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
7
C
N1
DG
7
1_555
F
DC
27
E
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
7
C
N2
DG
7
1_555
F
DC
27
E
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
7
C
O6
DG
7
1_555
F
DC
27
E
N4
DC
6
1_555
hydrog
WATSON-CRICK
C
DC
8
C
N3
DC
8
1_555
F
DG
26
E
N1
DG
5
1_555
hydrog
WATSON-CRICK
C
DC
8
C
N4
DC
8
1_555
F
DG
26
E
O6
DG
5
1_555
hydrog
WATSON-CRICK
C
DC
8
C
O2
DC
8
1_555
F
DG
26
E
N2
DG
5
1_555
hydrog
WATSON-CRICK
C
DT
9
C
N3
DT
9
1_555
F
DA
25
E
N1
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
9
C
O4
DT
9
1_555
F
DA
25
E
N6
DA
4
1_555
hydrog
WATSON-CRICK
C
DT
10
C
N3
DT
10
1_555
C
DA
24
C
N1
DA
24
1_555
hydrog
WATSON-CRICK
C
DT
10
C
O4
DT
10
1_555
C
DA
24
C
N6
DA
24
1_555
hydrog
WATSON-CRICK
C
DT
11
C
N3
DT
11
1_555
C
DA
23
C
N1
DA
23
1_555
hydrog
WATSON-CRICK
C
DT
11
C
O4
DT
11
1_555
C
DA
23
C
N6
DA
23
1_555
hydrog
WATSON-CRICK
C
DG
12
C
N1
DG
12
1_555
C
DC
22
C
N3
DC
22
1_555
hydrog
WATSON-CRICK
C
DG
12
C
N2
DG
12
1_555
C
DC
22
C
O2
DC
22
1_555
hydrog
WATSON-CRICK
C
DG
12
C
O6
DG
12
1_555
C
DC
22
C
N4
DC
22
1_555
hydrog
WATSON-CRICK
C
DA
13
C
N1
DA
13
1_555
C
DT
21
C
N3
DT
21
1_555
hydrog
WATSON-CRICK
C
DA
13
C
N6
DA
13
1_555
C
DT
21
C
O4
DT
21
1_555
hydrog
WATSON-CRICK
C
DC
14
C
N3
DC
14
1_555
C
DG
20
C
N1
DG
20
1_555
hydrog
WATSON-CRICK
C
DC
14
C
N4
DC
14
1_555
C
DG
20
C
O6
DG
20
1_555
hydrog
WATSON-CRICK
C
DC
14
C
O2
DC
14
1_555
C
DG
20
C
N2
DG
20
1_555
hydrog
WATSON-CRICK
C
DC
15
C
N3
DC
15
1_555
C
DG
19
C
N1
DG
19
1_555
hydrog
WATSON-CRICK
C
DC
15
C
N4
DC
15
1_555
C
DG
19
C
O6
DG
19
1_555
hydrog
WATSON-CRICK
C
DC
15
C
O2
DC
15
1_555
C
DG
19
C
N2
DG
19
1_555
hydrog
WATSON-CRICK
C
DT
25
C
N3
DT
25
1_555
D
DA
9
D
N1
DA
9
1_555
hydrog
WATSON-CRICK
C
DT
25
C
O4
DT
25
1_555
D
DA
9
D
N6
DA
9
1_555
hydrog
WATSON-CRICK
C
DC
26
C
N3
DC
26
1_555
D
DG
8
D
N1
DG
8
1_555
hydrog
WATSON-CRICK
C
DC
26
C
N4
DC
26
1_555
D
DG
8
D
O6
DG
8
1_555
hydrog
WATSON-CRICK
C
DC
26
C
O2
DC
26
1_555
D
DG
8
D
N2
DG
8
1_555
hydrog
WATSON-CRICK
C
DG
27
C
N1
DG
27
1_555
D
DC
7
D
N3
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
27
C
N2
DG
27
1_555
D
DC
7
D
O2
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
27
C
O6
DG
27
1_555
D
DC
7
D
N4
DC
7
1_555
hydrog
WATSON-CRICK
C
DG
28
C
N1
DG
28
1_555
D
DC
6
D
N3
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
28
C
N2
DG
28
1_555
D
DC
6
D
O2
DC
6
1_555
hydrog
WATSON-CRICK
C
DG
28
C
O6
DG
28
1_555
D
DC
6
D
N4
DC
6
1_555
hydrog
WATSON-CRICK
C
DC
29
C
N3
DC
29
1_555
D
DG
5
D
N1
DG
5
1_555
hydrog
WATSON-CRICK
C
DC
29
C
N4
DC
29
1_555
D
DG
5
D
O6
DG
5
1_555
hydrog
WATSON-CRICK
C
DC
29
C
O2
DC
29
1_555
D
DG
5
D
N2
DG
5
1_555
hydrog
WATSON-CRICK
C
DA
30
C
N1
DA
30
1_555
D
DT
4
D
N3
DT
4
1_555
hydrog
WATSON-CRICK
C
DA
30
C
N6
DA
30
1_555
D
DT
4
D
O4
DT
4
1_555
hydrog
DG-DT MISPAIR
C
DG
31
C
N1
DG
31
1_555
D
DT
2
D
O4
DT
2
1_555
hydrog
WATSON-CRICK
C
DG
31
C
N1
DG
31
1_555
D
DC
3
D
N3
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
31
C
N2
DG
31
1_555
D
DC
3
D
O2
DC
3
1_555
hydrog
WATSON-CRICK
C
DG
31
C
O6
DG
31
1_555
D
DC
3
D
N4
DC
3
1_555
hydrog
WATSON-CRICK
D
DT
10
D
N3
DT
10
1_555
F
DA
24
E
N1
DA
3
1_555
hydrog
WATSON-CRICK
D
DT
10
D
O4
DT
10
1_555
F
DA
24
E
N6
DA
3
1_555
hydrog
WATSON-CRICK
D
DT
11
D
N3
DT
11
1_555
F
DA
23
E
N1
DA
2
1_555
hydrog
WATSON-CRICK
D
DT
11
D
O4
DT
11
1_555
F
DA
23
E
N6
DA
2
1_555
hydrog
DT-DA PAIR
D
DT
11
D
N3
DT
11
1_555
F
DA
24
E
N1
DA
3
1_555
hydrog
WATSON-CRICK
D
DC
12
D
N3
DC
12
1_555
F
DG
22
E
N1
DG
1
1_555
hydrog
WATSON-CRICK
D
DC
12
D
N4
DC
12
1_555
F
DG
22
E
O6
DG
1
1_555
hydrog
WATSON-CRICK
D
DC
12
D
O2
DC
12
1_555
F
DG
22
E
N2
DG
1
1_555
HYDROLASE/DNA
RNase H fold, nuclease, DNA, HYDROLASE-DNA complex
A
GLY
24
A
GLY
27
1
A
ALA
25
A
ALA
28
0.99
A
ARG
140
A
ARG
143
1
A
PRO
141
A
PRO
144
-5.58
B
ARG
140
B
ARG
143
1
B
PRO
141
B
PRO
144
-4.83
chain A and (resseq 11:20 or resseq 28:71 or resseq 80:115 or resseq 123:136 or resseq 140:160 ) and (not element H) and (not element D)
chain B and (resseq 11:20 or resseq 28:71 or resseq 80:115 or resseq 123:136 or resseq 140:160 ) and (not element H) and (not element D)
chain A and (resseq 1:20 or resseq 26:115 or resseq 122:165 )
chain B and (resseq 1:20 or resseq 26:115 or resseq 122:165 )
A
THR
11
A
THR
14
A
VAL
20
A
VAL
23
chain 'A' and (resseq 11:20 or resseq 28:71 or resseq 80:115 or resseq 123:136 or resseq 140:160 ) and (not element H) and (not element D)
A
ALA
28
A
ALA
31
A
GLU
71
A
GLU
74
chain 'A' and (resseq 11:20 or resseq 28:71 or resseq 80:115 or resseq 123:136 or resseq 140:160 ) and (not element H) and (not element D)
A
LEU
80
A
LEU
83
A
ALA
115
A
ALA
118
chain 'A' and (resseq 11:20 or resseq 28:71 or resseq 80:115 or resseq 123:136 or resseq 140:160 ) and (not element H) and (not element D)
A
GLU
123
A
GLU
126
A
LYS
136
A
LYS
139
chain 'A' and (resseq 11:20 or resseq 28:71 or resseq 80:115 or resseq 123:136 or resseq 140:160 ) and (not element H) and (not element D)
A
ARG
140
A
ARG
143
A
MET
160
A
MET
163
chain 'A' and (resseq 11:20 or resseq 28:71 or resseq 80:115 or resseq 123:136 or resseq 140:160 ) and (not element H) and (not element D)
B
THR
11
B
THR
14
B
VAL
20
B
VAL
23
chain 'B' and (resseq 11:20 or resseq 28:71 or resseq 80:115 or resseq 123:136 or resseq 140:160 ) and (not element H) and (not element D)
B
ALA
28
B
ALA
31
B
GLU
71
B
GLU
74
chain 'B' and (resseq 11:20 or resseq 28:71 or resseq 80:115 or resseq 123:136 or resseq 140:160 ) and (not element H) and (not element D)
B
LEU
80
B
LEU
83
B
ALA
115
B
ALA
118
chain 'B' and (resseq 11:20 or resseq 28:71 or resseq 80:115 or resseq 123:136 or resseq 140:160 ) and (not element H) and (not element D)
B
GLU
123
B
GLU
126
B
LYS
136
B
LYS
139
chain 'B' and (resseq 11:20 or resseq 28:71 or resseq 80:115 or resseq 123:136 or resseq 140:160 ) and (not element H) and (not element D)
B
ARG
140
B
ARG
143
B
MET
160
B
MET
163
chain 'B' and (resseq 11:20 or resseq 28:71 or resseq 80:115 or resseq 123:136 or resseq 140:160 ) and (not element H) and (not element D)
A
MET
1
A
MET
4
A
VAL
20
A
VAL
23
chain 'A' and (resseq 1:20 or resseq 26:115 or resseq 122:165 )
A
LEU
26
A
LEU
29
A
ALA
115
A
ALA
118
chain 'A' and (resseq 1:20 or resseq 26:115 or resseq 122:165 )
A
LYS
122
A
LYS
125
A
PRO
165
A
PRO
168
chain 'A' and (resseq 1:20 or resseq 26:115 or resseq 122:165 )
B
MET
1
B
MET
4
B
VAL
20
B
VAL
23
chain 'B' and (resseq 1:20 or resseq 26:115 or resseq 122:165 )
B
LEU
26
B
LEU
29
B
ALA
115
B
ALA
118
chain 'B' and (resseq 1:20 or resseq 26:115 or resseq 122:165 )
B
LYS
122
B
LYS
125
B
PRO
165
B
PRO
168
chain 'B' and (resseq 1:20 or resseq 26:115 or resseq 122:165 )
RUVC_THET8
UNP
1
1
Q5SJC4
MVVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFRPEAVAVEEQFFYRQNEL
AYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGHGHAAKEEVALMVRGILGLKEAPRPSHLADALAIALTHAFYARM
GTAKPL
4LD0
PDB
2
4LD0
CAATCGGCTTTGACCTTTGGTCAATCGGCAG
4LD0
PDB
3
4LD0
ATCTGCCGATTCT
4LD0
PDB
4
4LD0
GAAAGCCGATT
1
166
4LD0
1
166
Q5SJC4
A
1
4
169
1
166
4LD0
1
166
Q5SJC4
B
1
4
169
1
31
4LD0
1
31
4LD0
C
2
1
31
1
13
4LD0
1
13
4LD0
D
3
1
13
22
32
4LD0
22
32
4LD0
F
4
1
11
1
expression tag
GLY
-2
4LD0
A
Q5SJC4
UNP
1
1
expression tag
PRO
-1
4LD0
A
Q5SJC4
UNP
2
1
expression tag
HIS
0
4LD0
A
Q5SJC4
UNP
3
1
GLU
engineered mutation
GLN
70
4LD0
A
Q5SJC4
UNP
70
73
2
expression tag
GLY
-2
4LD0
B
Q5SJC4
UNP
1
2
expression tag
PRO
-1
4LD0
B
Q5SJC4
UNP
2
2
expression tag
HIS
0
4LD0
B
Q5SJC4
UNP
3
2
GLU
engineered mutation
GLN
70
4LD0
B
Q5SJC4
UNP
70
73
5
5
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
A
ALA
28
A
ALA
31
A
LYS
37
A
LYS
40
A
HIS
12
A
HIS
15
A
VAL
20
A
VAL
23
A
VAL
2
A
VAL
5
A
ASP
7
A
ASP
10
A
ALA
66
A
ALA
69
A
GLN
70
A
GLN
73
A
VAL
102
A
VAL
105
A
TYR
105
A
TYR
108
B
ARG
29
B
ARG
32
B
LYS
37
B
LYS
40
B
HIS
12
B
HIS
15
B
VAL
20
B
VAL
23
B
MET
1
B
MET
4
B
ASP
7
B
ASP
10
B
ALA
66
B
ALA
69
B
GLN
70
B
GLN
73
B
VAL
102
B
VAL
105
B
TYR
105
B
TYR
108
154
P 32 2 1