0.012429
0.000000
0.000000
0.000000
0.012429
0.000000
0.000000
0.000000
0.021033
0.00000
0.00000
0.00000
Bornholdt, Z.A.
Ableson, D.M.
Saphire, E.O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
80.457
80.457
47.543
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
154
763
774
10.1016/j.cell.2013.07.015
23953110
Structural Rearrangement of Ebola Virus VP40 Begets Multiple Functions in the Virus Life Cycle.
2013
10.2210/pdb4ldm/pdb
pdb_00004ldm
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
85
1
CCD
2012-06-14
ADSC QUANTUM 315r
liquid nitrogen cooled dual crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
5.0.2
ALS
1.0000
SYNCHROTRON
ALS BEAMLINE 5.0.2
17502.066
Matrix protein VP40
UNP residues 44-188
1
man
polymer
18.015
water
102
nat
water
Membrane-associated protein VP40
no
no
MAHHHHHHVDDDDKGDTPSNPLRPIADDTIDHASHTPGSVSSAFILEAMVNVISGPKVLMKQIPIWLPLGVADQKTYSFD
STTAAIMLASYTITHFGKATNPLVRVNRLGPGIPDHPLRLLRIGNQAFLQEFVLPPVQLPQYFTFDLTALKLITQPLPA
MAHHHHHHVDDDDKGDTPSNPLRPIADDTIDHASHTPGSVSSAFILEAMVNVISGPKVLMKQIPIWLPLGVADQKTYSFD
STTAAIMLASYTITHFGKATNPLVRVNRLGPGIPDHPLRLLRIGNQAFLQEFVLPPVQLPQYFTFDLTALKLITQPLPA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ZEBOV
sample
VP40
186538
Ebola virus
562
Escherichia coli
1
2.20
44.04
VAPOR DIFFUSION, HANGING DROP
8.5
0.1 M bicine, 15% PEG20000, 3% dextran sulfate sodium salt (Mr = 5 kDa), pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
293.0
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Database references
Data collection
Database references
1
0
2013-08-21
1
1
2013-09-04
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2013-06-24
REL
REL
HOH
water
HOH
1
2
HOH
HOH
201
A
HOH
2
2
HOH
HOH
202
A
HOH
3
2
HOH
HOH
203
A
HOH
4
2
HOH
HOH
204
A
HOH
5
2
HOH
HOH
205
A
HOH
6
2
HOH
HOH
206
A
HOH
7
2
HOH
HOH
207
A
HOH
8
2
HOH
HOH
208
A
HOH
9
2
HOH
HOH
209
A
HOH
10
2
HOH
HOH
210
A
HOH
11
2
HOH
HOH
211
A
HOH
12
2
HOH
HOH
212
A
HOH
13
2
HOH
HOH
213
A
HOH
14
2
HOH
HOH
214
A
HOH
15
2
HOH
HOH
215
A
HOH
16
2
HOH
HOH
216
A
HOH
17
2
HOH
HOH
217
A
HOH
18
2
HOH
HOH
218
A
HOH
19
2
HOH
HOH
219
A
HOH
20
2
HOH
HOH
220
A
HOH
21
2
HOH
HOH
221
A
HOH
22
2
HOH
HOH
222
A
HOH
23
2
HOH
HOH
223
A
HOH
24
2
HOH
HOH
224
A
HOH
25
2
HOH
HOH
225
A
HOH
26
2
HOH
HOH
226
A
HOH
27
2
HOH
HOH
227
A
HOH
28
2
HOH
HOH
228
A
HOH
29
2
HOH
HOH
229
A
HOH
30
2
HOH
HOH
230
A
HOH
31
2
HOH
HOH
231
A
HOH
32
2
HOH
HOH
232
A
HOH
33
2
HOH
HOH
233
A
HOH
34
2
HOH
HOH
234
A
HOH
35
2
HOH
HOH
235
A
HOH
36
2
HOH
HOH
236
A
HOH
37
2
HOH
HOH
237
A
HOH
38
2
HOH
HOH
238
A
HOH
39
2
HOH
HOH
239
A
HOH
40
2
HOH
HOH
240
A
HOH
41
2
HOH
HOH
241
A
HOH
42
2
HOH
HOH
242
A
HOH
43
2
HOH
HOH
243
A
HOH
44
2
HOH
HOH
244
A
HOH
45
2
HOH
HOH
245
A
HOH
46
2
HOH
HOH
246
A
HOH
47
2
HOH
HOH
247
A
HOH
48
2
HOH
HOH
248
A
HOH
49
2
HOH
HOH
249
A
HOH
50
2
HOH
HOH
250
A
HOH
51
2
HOH
HOH
251
A
HOH
52
2
HOH
HOH
252
A
HOH
53
2
HOH
HOH
253
A
HOH
54
2
HOH
HOH
254
A
HOH
55
2
HOH
HOH
255
A
HOH
56
2
HOH
HOH
256
A
HOH
57
2
HOH
HOH
257
A
HOH
58
2
HOH
HOH
258
A
HOH
59
2
HOH
HOH
259
A
HOH
60
2
HOH
HOH
260
A
HOH
61
2
HOH
HOH
261
A
HOH
62
2
HOH
HOH
262
A
HOH
63
2
HOH
HOH
263
A
HOH
64
2
HOH
HOH
264
A
HOH
65
2
HOH
HOH
265
A
HOH
66
2
HOH
HOH
266
A
HOH
67
2
HOH
HOH
267
A
HOH
68
2
HOH
HOH
268
A
HOH
69
2
HOH
HOH
269
A
HOH
70
2
HOH
HOH
270
A
HOH
71
2
HOH
HOH
271
A
HOH
72
2
HOH
HOH
272
A
HOH
73
2
HOH
HOH
273
A
HOH
74
2
HOH
HOH
274
A
HOH
75
2
HOH
HOH
275
A
HOH
76
2
HOH
HOH
276
A
HOH
77
2
HOH
HOH
277
A
HOH
78
2
HOH
HOH
278
A
HOH
79
2
HOH
HOH
279
A
HOH
80
2
HOH
HOH
280
A
HOH
81
2
HOH
HOH
281
A
HOH
82
2
HOH
HOH
282
A
HOH
83
2
HOH
HOH
283
A
HOH
84
2
HOH
HOH
284
A
HOH
85
2
HOH
HOH
285
A
HOH
86
2
HOH
HOH
286
A
HOH
87
2
HOH
HOH
287
A
HOH
88
2
HOH
HOH
288
A
HOH
89
2
HOH
HOH
289
A
HOH
90
2
HOH
HOH
290
A
HOH
91
2
HOH
HOH
291
A
HOH
92
2
HOH
HOH
292
A
HOH
93
2
HOH
HOH
293
A
HOH
94
2
HOH
HOH
294
A
HOH
95
2
HOH
HOH
295
A
HOH
96
2
HOH
HOH
296
A
HOH
97
2
HOH
HOH
297
A
HOH
98
2
HOH
HOH
298
A
HOH
99
2
HOH
HOH
299
A
HOH
100
2
HOH
HOH
300
A
HOH
101
2
HOH
HOH
301
A
HOH
102
2
HOH
HOH
302
A
n
1
30
A
n
2
31
A
n
3
32
A
n
4
33
A
n
5
34
A
n
6
35
A
n
7
36
A
n
8
37
A
n
9
38
A
n
10
39
A
n
11
40
A
n
12
41
A
n
13
42
A
n
14
43
A
n
15
44
A
n
16
45
A
n
17
46
A
n
18
47
A
n
19
48
A
n
20
49
A
n
21
50
A
n
22
51
A
n
23
52
A
n
24
53
A
n
25
54
A
n
26
55
A
n
27
56
A
n
28
57
A
n
29
58
A
n
30
59
A
n
31
60
A
n
32
61
A
n
33
62
A
n
34
63
A
n
35
64
A
n
36
65
A
n
37
66
A
n
38
67
A
n
39
68
A
VAL
69
n
40
VAL
69
A
SER
70
n
41
SER
70
A
SER
71
n
42
SER
71
A
ALA
72
n
43
ALA
72
A
PHE
73
n
44
PHE
73
A
ILE
74
n
45
ILE
74
A
LEU
75
n
46
LEU
75
A
GLU
76
n
47
GLU
76
A
ALA
77
n
48
ALA
77
A
MET
78
n
49
MET
78
A
VAL
79
n
50
VAL
79
A
ASN
80
n
51
ASN
80
A
VAL
81
n
52
VAL
81
A
ILE
82
n
53
ILE
82
A
SER
83
n
54
SER
83
A
GLY
84
n
55
GLY
84
A
PRO
85
n
56
PRO
85
A
LYS
86
n
57
LYS
86
A
VAL
87
n
58
VAL
87
A
LEU
88
n
59
LEU
88
A
MET
89
n
60
MET
89
A
LYS
90
n
61
LYS
90
A
GLN
91
n
62
GLN
91
A
ILE
92
n
63
ILE
92
A
PRO
93
n
64
PRO
93
A
ILE
94
n
65
ILE
94
A
TRP
95
n
66
TRP
95
A
LEU
96
n
67
LEU
96
A
PRO
97
n
68
PRO
97
A
LEU
98
n
69
LEU
98
A
GLY
99
n
70
GLY
99
A
VAL
100
n
71
VAL
100
A
ALA
101
n
72
ALA
101
A
ASP
102
n
73
ASP
102
A
GLN
103
n
74
GLN
103
A
LYS
104
n
75
LYS
104
A
THR
105
n
76
THR
105
A
TYR
106
n
77
TYR
106
A
SER
107
n
78
SER
107
A
PHE
108
n
79
PHE
108
A
ASP
109
n
80
ASP
109
A
SER
110
n
81
SER
110
A
THR
111
n
82
THR
111
A
THR
112
n
83
THR
112
A
ALA
113
n
84
ALA
113
A
ALA
114
n
85
ALA
114
A
ILE
115
n
86
ILE
115
A
MET
116
n
87
MET
116
A
LEU
117
n
88
LEU
117
A
ALA
118
n
89
ALA
118
A
SER
119
n
90
SER
119
A
TYR
120
n
91
TYR
120
A
THR
121
n
92
THR
121
A
ILE
122
n
93
ILE
122
A
THR
123
n
94
THR
123
A
HIS
124
n
95
HIS
124
A
PHE
125
n
96
PHE
125
A
GLY
126
n
97
GLY
126
A
LYS
127
n
98
LYS
127
A
ALA
128
n
99
ALA
128
A
THR
129
n
100
THR
129
A
ASN
130
n
101
ASN
130
A
PRO
131
n
102
PRO
131
A
LEU
132
n
103
LEU
132
A
VAL
133
n
104
VAL
133
A
ARG
134
n
105
ARG
134
A
VAL
135
n
106
VAL
135
A
ASN
136
n
107
ASN
136
A
ARG
137
n
108
ARG
137
A
LEU
138
n
109
LEU
138
A
GLY
139
n
110
GLY
139
A
PRO
140
n
111
PRO
140
A
GLY
141
n
112
GLY
141
A
ILE
142
n
113
ILE
142
A
PRO
143
n
114
PRO
143
A
ASP
144
n
115
ASP
144
A
HIS
145
n
116
HIS
145
A
PRO
146
n
117
PRO
146
A
LEU
147
n
118
LEU
147
A
ARG
148
n
119
ARG
148
A
LEU
149
n
120
LEU
149
A
LEU
150
n
121
LEU
150
A
ARG
151
n
122
ARG
151
A
ILE
152
n
123
ILE
152
A
GLY
153
n
124
GLY
153
A
ASN
154
n
125
ASN
154
A
GLN
155
n
126
GLN
155
A
ALA
156
n
127
ALA
156
A
PHE
157
n
128
PHE
157
A
LEU
158
n
129
LEU
158
A
GLN
159
n
130
GLN
159
A
GLU
160
n
131
GLU
160
A
PHE
161
n
132
PHE
161
A
VAL
162
n
133
VAL
162
A
LEU
163
n
134
LEU
163
A
PRO
164
n
135
PRO
164
A
PRO
165
n
136
PRO
165
A
VAL
166
n
137
VAL
166
A
GLN
167
n
138
GLN
167
A
LEU
168
n
139
LEU
168
A
PRO
169
n
140
PRO
169
A
GLN
170
n
141
GLN
170
A
TYR
171
n
142
TYR
171
A
PHE
172
n
143
PHE
172
A
THR
173
n
144
THR
173
A
PHE
174
n
145
PHE
174
A
ASP
175
n
146
ASP
175
A
LEU
176
n
147
LEU
176
A
THR
177
n
148
THR
177
A
ALA
178
n
149
ALA
178
A
LEU
179
n
150
LEU
179
A
LYS
180
n
151
LYS
180
A
LEU
181
n
152
LEU
181
A
ILE
182
n
153
ILE
182
A
THR
183
n
154
THR
183
A
GLN
184
n
155
GLN
184
A
PRO
185
n
156
PRO
185
A
LEU
186
n
157
LEU
186
A
PRO
187
n
158
PRO
187
A
ALA
188
n
159
ALA
188
A
2.6970
-2.3188
-0.0958
4.3844
2.7037
2.8761
0.1547
-0.1771
0.1862
-0.1178
0.1851
-0.3789
-0.0582
0.4798
-0.4817
0.2196
-0.0037
-0.0125
0.1813
-0.0197
0.2984
refined
16.3089
29.3544
24.2949
X-RAY DIFFRACTION
5.6716
-2.1947
-3.0847
3.1245
2.9165
5.9788
0.0245
-0.4900
0.3204
0.1442
0.1368
-0.0722
0.0750
0.1366
-0.0961
0.2462
0.0068
-0.0188
0.2170
0.0368
0.3083
refined
9.5524
30.3957
30.9165
X-RAY DIFFRACTION
6.2244
0.3208
-3.3903
2.4521
-1.7639
8.5351
0.2216
0.2420
-0.0149
-0.3305
-0.1160
-0.0838
0.2041
0.4125
-0.1573
0.2143
0.0399
0.0006
0.1699
-0.0309
0.2287
refined
13.0583
28.4800
14.9179
X-RAY DIFFRACTION
3.1347
0.6972
3.3403
0.8359
1.2117
3.8819
0.0922
-2.4374
-2.9471
1.2193
0.0800
-1.1247
2.4071
-0.7012
-0.1919
1.0916
0.1521
0.0955
0.8360
0.4263
1.0402
refined
6.4791
12.0543
35.6525
X-RAY DIFFRACTION
6.6758
-2.7005
4.2669
3.0904
-0.1461
4.2391
-0.1001
-0.4162
-0.4290
-0.6361
0.8379
0.2466
0.6963
-0.8699
-0.5032
0.2356
-0.0319
0.0366
0.2210
-0.0063
0.2927
refined
6.1610
22.5420
23.6605
X-RAY DIFFRACTION
2.6085
-4.2138
-0.1780
9.7646
2.2699
2.3000
0.2409
0.4621
-0.7261
-0.3370
-0.0812
0.3475
0.0400
-0.0643
-0.2677
0.2476
0.0051
-0.0022
0.3249
-0.0540
0.2951
refined
8.9312
23.4546
11.9932
X-RAY DIFFRACTION
3.6898
-2.7237
2.3225
3.7333
-1.7947
6.8951
0.2636
-0.0516
-0.0031
-0.2219
0.0989
-0.3762
0.9363
0.0837
-0.5032
0.3411
-0.0171
0.0066
0.2322
-0.0031
0.3656
refined
12.5503
18.9054
27.6949
X-RAY DIFFRACTION
2.7274
0.8104
-0.4344
2.3002
0.4526
1.0012
-0.0229
-0.4923
-0.2800
0.2223
0.1153
-0.0236
0.0245
0.0898
-0.2033
0.2086
0.0056
-0.0110
0.3105
0.0638
0.3457
refined
6.7123
26.4691
33.8080
X-RAY DIFFRACTION
4.5908
-4.4726
-0.9989
6.8905
4.2507
5.0612
0.1005
-0.6588
0.7802
0.2556
0.4422
-1.1045
0.0814
1.0760
-0.8445
0.2637
0.0050
0.0376
0.3665
-0.0288
0.4919
refined
24.5367
28.8102
18.7533
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resid 70 through 81 )
X-RAY DIFFRACTION
2
chain 'A' and (resid 82 through 101 )
X-RAY DIFFRACTION
3
chain 'A' and (resid 102 through 125 )
X-RAY DIFFRACTION
4
chain 'A' and (resid 126 through 131 )
X-RAY DIFFRACTION
5
chain 'A' and (resid 132 through 137 )
X-RAY DIFFRACTION
6
chain 'A' and (resid 138 through 153 )
X-RAY DIFFRACTION
7
chain 'A' and (resid 154 through 162 )
X-RAY DIFFRACTION
8
chain 'A' and (resid 163 through 179 )
X-RAY DIFFRACTION
9
chain 'A' and (resid 180 through 186 )
author_and_software_defined_assembly
PISA
8
octameric
16580
-110
40150
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_555
-y,x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_555
y,-x,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
5_556
-x,y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
47.5430000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_556
x,-y,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
47.5430000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_556
y,x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
47.5430000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_556
-y,-x,-z+1
crystal symmetry operation
0.0000000000
0.0000000000
47.5430000000
A
O
ILE
92
A
O
ILE
63
A
N
VAL
79
A
N
VAL
50
A
N
GLU
76
A
N
GLU
47
A
O
LYS
180
A
O
LYS
151
A
O
PHE
174
A
O
PHE
145
A
N
ILE
122
A
N
ILE
93
A
N
PHE
125
A
N
PHE
96
A
O
LEU
132
A
O
LEU
103
A
N
VAL
133
A
N
VAL
104
A
O
PHE
157
A
O
PHE
128
1
A
HOH
288
B
HOH
1
A
HOH
296
B
HOH
1
A
MET
30
A
MET
1
1
Y
1
A
ALA
31
A
ALA
2
1
Y
1
A
HIS
32
A
HIS
3
1
Y
1
A
HIS
33
A
HIS
4
1
Y
1
A
HIS
34
A
HIS
5
1
Y
1
A
HIS
35
A
HIS
6
1
Y
1
A
HIS
36
A
HIS
7
1
Y
1
A
HIS
37
A
HIS
8
1
Y
1
A
VAL
38
A
VAL
9
1
Y
1
A
ASP
39
A
ASP
10
1
Y
1
A
ASP
40
A
ASP
11
1
Y
1
A
ASP
41
A
ASP
12
1
Y
1
A
ASP
42
A
ASP
13
1
Y
1
A
LYS
43
A
LYS
14
1
Y
1
A
GLY
44
A
GLY
15
1
Y
1
A
ASP
45
A
ASP
16
1
Y
1
A
THR
46
A
THR
17
1
Y
1
A
PRO
47
A
PRO
18
1
Y
1
A
SER
48
A
SER
19
1
Y
1
A
ASN
49
A
ASN
20
1
Y
1
A
PRO
50
A
PRO
21
1
Y
1
A
LEU
51
A
LEU
22
1
Y
1
A
ARG
52
A
ARG
23
1
Y
1
A
PRO
53
A
PRO
24
1
Y
1
A
ILE
54
A
ILE
25
1
Y
1
A
ALA
55
A
ALA
26
1
Y
1
A
ASP
56
A
ASP
27
1
Y
1
A
ASP
57
A
ASP
28
1
Y
1
A
THR
58
A
THR
29
1
Y
1
A
ILE
59
A
ILE
30
1
Y
1
A
ASP
60
A
ASP
31
1
Y
1
A
HIS
61
A
HIS
32
1
Y
1
A
ALA
62
A
ALA
33
1
Y
1
A
SER
63
A
SER
34
1
Y
1
A
HIS
64
A
HIS
35
1
Y
1
A
THR
65
A
THR
36
1
Y
1
A
PRO
66
A
PRO
37
1
Y
1
A
GLY
67
A
GLY
38
1
Y
1
A
SER
68
A
SER
39
1
Y
1
A
A
SD
O
MET
HOH
116
277
1.85
1
A
ASP
102
-107.88
-169.21
0.2021
0.1865
0.1873
1.850
47.543
694
13881
13877
5.00
99.95
0.14
RANDOM
1
1.34
MOLECULAR REPLACEMENT
24.24
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
1.850
47.543
102
1035
0
0
933
0.012
958
1.360
1311
12.847
352
0.076
158
0.008
165
0.2384
0.2286
1.9930
130
2585
100.0
0.2871
0.2088
2.1936
144
2577
100.0
0.2121
0.1946
2.5110
132
2602
100.0
0.1907
0.1951
3.1635
153
2621
100.0
0.1835
0.1724
47.5590
135
2798
100.0
1.850
80.457
4LDM
13886
13881
0
-3
1
99.9
1.850
1
data collection
HKL-2000
phasing
PHASER
refinement
PHENIX
(phenix.refine: dev_1150)
data reduction
d*TREK
data scaling
d*TREK
Crystal Structure of an RNA-free VP40 Octameric Ring
1
N
N
2
N
N
A
SER
107
A
SER
78
HELX_P
A
ALA
118
A
ALA
89
1
1
12
A
LEU
147
A
LEU
118
HELX_P
A
ILE
152
A
ILE
123
1
2
6
A
GLN
159
A
GLN
130
HELX_P
A
LEU
163
A
LEU
134
1
3
5
VIRAL PROTEIN
ebolavirus matrix protein, RNA binding ring, viral transcription regulation, VIRAL PROTEIN
VP40_EBOZM
UNP
1
44
Q05128
GDTPSNPLRPIADDTIDHASHTPGSVSSAFILEAMVNVISGPKVLMKQIPIWLPLGVADQKTYSFDSTTAAIMLASYTIT
HFGKATNPLVRVNRLGPGIPDHPLRLLRIGNQAFLQEFVLPPVQLPQYFTFDLTALKLITQPLPA
44
188
4LDM
44
188
Q05128
A
1
15
159
1
expression tag
MET
30
4LDM
A
Q05128
UNP
1
1
expression tag
ALA
31
4LDM
A
Q05128
UNP
2
1
expression tag
HIS
32
4LDM
A
Q05128
UNP
3
1
expression tag
HIS
33
4LDM
A
Q05128
UNP
4
1
expression tag
HIS
34
4LDM
A
Q05128
UNP
5
1
expression tag
HIS
35
4LDM
A
Q05128
UNP
6
1
expression tag
HIS
36
4LDM
A
Q05128
UNP
7
1
expression tag
HIS
37
4LDM
A
Q05128
UNP
8
1
expression tag
VAL
38
4LDM
A
Q05128
UNP
9
1
expression tag
ASP
39
4LDM
A
Q05128
UNP
10
1
expression tag
ASP
40
4LDM
A
Q05128
UNP
11
1
expression tag
ASP
41
4LDM
A
Q05128
UNP
12
1
expression tag
ASP
42
4LDM
A
Q05128
UNP
13
1
expression tag
LYS
43
4LDM
A
Q05128
UNP
14
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
87
A
VAL
58
A
ALA
101
A
ALA
72
A
SER
71
A
SER
42
A
GLY
84
A
GLY
55
A
THR
173
A
THR
144
A
PRO
185
A
PRO
156
A
TYR
120
A
TYR
91
A
PHE
125
A
PHE
96
A
LEU
132
A
LEU
103
A
ARG
137
A
ARG
108
A
ASN
154
A
ASN
125
A
LEU
158
A
LEU
129
89
P 4 2 2