0.012776
0.000000
0.000000
0.000000
0.012776
0.000000
0.000000
0.000000
0.026876
0.00000
0.00000
0.00000
Vergara, A.
Merlino, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
78.269
78.269
37.208
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Au 1
196.967
GOLD ION
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Chem.Commun.(Camb.)
1359-7345
49
10100
10102
10.1039/c3cc46400h
24045294
The mode of action of anticancer gold-based drugs: a structural perspective.
2013
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
2013-02-11
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ENRAF-NONIUS FR571
14331.160
Lysozyme C
3.2.1.17
1
nat
polymer
35.453
CHLORIDE ION
3
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
196.967
GOLD ION
1
syn
non-polymer
18.015
water
108
nat
water
1,4-beta-N-acetylmuramidase C, Allergen Gal d IV
no
no
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bantam,chickens
sample
9031
Gallus gallus
1.99
38.13
repository
Initial release
Database references
1
0
2013-10-02
1
1
2013-10-23
X-ray structure of the adduct between hen egg white lysozyme and AziRu (green crystal)
X-ray structure of the adduct between hen egg white lysozyme and AziRu (black crystal)
X-ray structure of the adduct between hen egg white lysozyme and a homoleptic gold(I) complex with the saccharynate ligand
RCSB
Y
RCSB
2013-06-27
REL
REL
CL
CHLORIDE ION
NA
SODIUM ION
AU
GOLD ION
HOH
water
THE GOLD COMPOUND FORMING HEWL ADDUCT UNDERGOES EXTENSIVE DEGRADATION UPON REACTION WITH THIS PROTEIN. THERE IS NO EVIDENCE OF THE PRESENCE OF THE ORIGINAL METAL LIGANDS FROM THE CRYSTAL STRUCTURE. THE DINUCLEAR GOLD(III) COMPOUND IS COMPLETELY LOST AND THE METAL IS REDUCED OWING TO THE APPRECIABLE OXIDISING CHARACTER OF THESE GOLD(III) CENTERS. IT FOLLOWS THAT PROTEIN IS BOUND TO GOLD IN THE OXIDATION STATE +1 INDEPENDENT OF THE NATURE OF THE STARTING COMPOUND, AS DOCUMENTED BY ITS LINEAR COORDINATION.
CL
1
2
CL
CL
201
A
CL
2
2
CL
CL
202
A
NA
10
3
NA
NA
203
A
AU3
301
4
AU
AU
204
A
CL
302
2
CL
CL
205
A
HOH
4
5
HOH
HOH
301
A
HOH
6
5
HOH
HOH
302
A
HOH
7
5
HOH
HOH
303
A
HOH
8
5
HOH
HOH
304
A
HOH
9
5
HOH
HOH
305
A
HOH
11
5
HOH
HOH
306
A
HOH
12
5
HOH
HOH
307
A
HOH
18
5
HOH
HOH
308
A
HOH
19
5
HOH
HOH
309
A
HOH
22
5
HOH
HOH
310
A
HOH
23
5
HOH
HOH
311
A
HOH
26
5
HOH
HOH
312
A
HOH
28
5
HOH
HOH
313
A
HOH
30
5
HOH
HOH
314
A
HOH
31
5
HOH
HOH
315
A
HOH
32
5
HOH
HOH
316
A
HOH
33
5
HOH
HOH
317
A
HOH
35
5
HOH
HOH
318
A
HOH
36
5
HOH
HOH
319
A
HOH
37
5
HOH
HOH
320
A
HOH
39
5
HOH
HOH
321
A
HOH
40
5
HOH
HOH
322
A
HOH
42
5
HOH
HOH
323
A
HOH
43
5
HOH
HOH
324
A
HOH
45
5
HOH
HOH
325
A
HOH
46
5
HOH
HOH
326
A
HOH
48
5
HOH
HOH
327
A
HOH
50
5
HOH
HOH
328
A
HOH
51
5
HOH
HOH
329
A
HOH
52
5
HOH
HOH
330
A
HOH
53
5
HOH
HOH
331
A
HOH
54
5
HOH
HOH
332
A
HOH
55
5
HOH
HOH
333
A
HOH
58
5
HOH
HOH
334
A
HOH
59
5
HOH
HOH
335
A
HOH
60
5
HOH
HOH
336
A
HOH
62
5
HOH
HOH
337
A
HOH
64
5
HOH
HOH
338
A
HOH
66
5
HOH
HOH
339
A
HOH
67
5
HOH
HOH
340
A
HOH
68
5
HOH
HOH
341
A
HOH
69
5
HOH
HOH
342
A
HOH
72
5
HOH
HOH
343
A
HOH
74
5
HOH
HOH
344
A
HOH
76
5
HOH
HOH
345
A
HOH
80
5
HOH
HOH
346
A
HOH
81
5
HOH
HOH
347
A
HOH
82
5
HOH
HOH
348
A
HOH
83
5
HOH
HOH
349
A
HOH
84
5
HOH
HOH
350
A
HOH
86
5
HOH
HOH
351
A
HOH
88
5
HOH
HOH
352
A
HOH
89
5
HOH
HOH
353
A
HOH
90
5
HOH
HOH
354
A
HOH
91
5
HOH
HOH
355
A
HOH
92
5
HOH
HOH
356
A
HOH
93
5
HOH
HOH
357
A
HOH
94
5
HOH
HOH
358
A
HOH
95
5
HOH
HOH
359
A
HOH
98
5
HOH
HOH
360
A
HOH
101
5
HOH
HOH
361
A
HOH
104
5
HOH
HOH
362
A
HOH
106
5
HOH
HOH
363
A
HOH
107
5
HOH
HOH
364
A
TIP
1
5
HOH
HOH
365
A
TIP
2
5
HOH
HOH
366
A
TIP
3
5
HOH
HOH
367
A
TIP
4
5
HOH
HOH
368
A
TIP
5
5
HOH
HOH
369
A
TIP
7
5
HOH
HOH
370
A
TIP
8
5
HOH
HOH
371
A
TIP
9
5
HOH
HOH
372
A
TIP
10
5
HOH
HOH
373
A
TIP
11
5
HOH
HOH
374
A
TIP
12
5
HOH
HOH
375
A
TIP
13
5
HOH
HOH
376
A
TIP
15
5
HOH
HOH
377
A
TIP
16
5
HOH
HOH
378
A
TIP
18
5
HOH
HOH
379
A
TIP
19
5
HOH
HOH
380
A
TIP
20
5
HOH
HOH
381
A
TIP
21
5
HOH
HOH
382
A
TIP
22
5
HOH
HOH
383
A
TIP
23
5
HOH
HOH
384
A
TIP
24
5
HOH
HOH
385
A
TIP
25
5
HOH
HOH
386
A
TIP
26
5
HOH
HOH
387
A
TIP
27
5
HOH
HOH
388
A
TIP
29
5
HOH
HOH
389
A
TIP
30
5
HOH
HOH
390
A
TIP
31
5
HOH
HOH
391
A
TIP
33
5
HOH
HOH
392
A
TIP
34
5
HOH
HOH
393
A
TIP
36
5
HOH
HOH
394
A
TIP
37
5
HOH
HOH
395
A
TIP
38
5
HOH
HOH
396
A
TIP
39
5
HOH
HOH
397
A
TIP
41
5
HOH
HOH
398
A
TIP
42
5
HOH
HOH
399
A
TIP
43
5
HOH
HOH
400
A
TIP
45
5
HOH
HOH
401
A
TIP
46
5
HOH
HOH
402
A
TIP
17
5
HOH
HOH
403
A
HOH
208
5
HOH
HOH
404
A
HOH
303
5
HOH
HOH
405
A
HOH
304
5
HOH
HOH
406
A
HOH
305
5
HOH
HOH
407
A
HOH
306
5
HOH
HOH
408
A
LYS
1
n
1
LYS
1
A
VAL
2
n
2
VAL
2
A
PHE
3
n
3
PHE
3
A
GLY
4
n
4
GLY
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ALA
10
n
10
ALA
10
A
ALA
11
n
11
ALA
11
A
MET
12
n
12
MET
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
HIS
15
n
15
HIS
15
A
GLY
16
n
16
GLY
16
A
LEU
17
n
17
LEU
17
A
ASP
18
n
18
ASP
18
A
ASN
19
n
19
ASN
19
A
TYR
20
n
20
TYR
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
TYR
23
n
23
TYR
23
A
SER
24
n
24
SER
24
A
LEU
25
n
25
LEU
25
A
GLY
26
n
26
GLY
26
A
ASN
27
n
27
ASN
27
A
TRP
28
n
28
TRP
28
A
VAL
29
n
29
VAL
29
A
CYS
30
n
30
CYS
30
A
ALA
31
n
31
ALA
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
PHE
34
n
34
PHE
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
ASN
37
n
37
ASN
37
A
PHE
38
n
38
PHE
38
A
ASN
39
n
39
ASN
39
A
THR
40
n
40
THR
40
A
GLN
41
n
41
GLN
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
ARG
45
n
45
ARG
45
A
ASN
46
n
46
ASN
46
A
THR
47
n
47
THR
47
A
ASP
48
n
48
ASP
48
A
GLY
49
n
49
GLY
49
A
SER
50
n
50
SER
50
A
THR
51
n
51
THR
51
A
ASP
52
n
52
ASP
52
A
TYR
53
n
53
TYR
53
A
GLY
54
n
54
GLY
54
A
ILE
55
n
55
ILE
55
A
LEU
56
n
56
LEU
56
A
GLN
57
n
57
GLN
57
A
ILE
58
n
58
ILE
58
A
ASN
59
n
59
ASN
59
A
SER
60
n
60
SER
60
A
ARG
61
n
61
ARG
61
A
TRP
62
n
62
TRP
62
A
TRP
63
n
63
TRP
63
A
CYS
64
n
64
CYS
64
A
ASN
65
n
65
ASN
65
A
ASP
66
n
66
ASP
66
A
GLY
67
n
67
GLY
67
A
ARG
68
n
68
ARG
68
A
THR
69
n
69
THR
69
A
PRO
70
n
70
PRO
70
A
GLY
71
n
71
GLY
71
A
SER
72
n
72
SER
72
A
ARG
73
n
73
ARG
73
A
ASN
74
n
74
ASN
74
A
LEU
75
n
75
LEU
75
A
CYS
76
n
76
CYS
76
A
ASN
77
n
77
ASN
77
A
ILE
78
n
78
ILE
78
A
PRO
79
n
79
PRO
79
A
CYS
80
n
80
CYS
80
A
SER
81
n
81
SER
81
A
ALA
82
n
82
ALA
82
A
LEU
83
n
83
LEU
83
A
LEU
84
n
84
LEU
84
A
SER
85
n
85
SER
85
A
SER
86
n
86
SER
86
A
ASP
87
n
87
ASP
87
A
ILE
88
n
88
ILE
88
A
THR
89
n
89
THR
89
A
ALA
90
n
90
ALA
90
A
SER
91
n
91
SER
91
A
VAL
92
n
92
VAL
92
A
ASN
93
n
93
ASN
93
A
CYS
94
n
94
CYS
94
A
ALA
95
n
95
ALA
95
A
LYS
96
n
96
LYS
96
A
LYS
97
n
97
LYS
97
A
ILE
98
n
98
ILE
98
A
VAL
99
n
99
VAL
99
A
SER
100
n
100
SER
100
A
ASP
101
n
101
ASP
101
A
GLY
102
n
102
GLY
102
A
ASN
103
n
103
ASN
103
A
GLY
104
n
104
GLY
104
A
MET
105
n
105
MET
105
A
ASN
106
n
106
ASN
106
A
ALA
107
n
107
ALA
107
A
TRP
108
n
108
TRP
108
A
VAL
109
n
109
VAL
109
A
ALA
110
n
110
ALA
110
A
TRP
111
n
111
TRP
111
A
ARG
112
n
112
ARG
112
A
ASN
113
n
113
ASN
113
A
ARG
114
n
114
ARG
114
A
CYS
115
n
115
CYS
115
A
LYS
116
n
116
LYS
116
A
GLY
117
n
117
GLY
117
A
THR
118
n
118
THR
118
A
ASP
119
n
119
ASP
119
A
VAL
120
n
120
VAL
120
A
GLN
121
n
121
GLN
121
A
ALA
122
n
122
ALA
122
A
TRP
123
n
123
TRP
123
A
ILE
124
n
124
ILE
124
A
ARG
125
n
125
ARG
125
A
GLY
126
n
126
GLY
126
A
CYS
127
n
127
CYS
127
A
ARG
128
n
128
ARG
128
A
LEU
129
n
129
LEU
129
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ARG
73
A
O
ARG
73
1_555
A
NA
203
D
NA
NA
1_555
A
HOH
317
G
O
HOH
1_555
108.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
44
A
N
ASN
44
A
O
ASP
52
A
O
ASP
52
A
N
TYR
53
A
N
TYR
53
A
O
ILE
58
A
O
ILE
58
1
A
A
O
O
HOH
HOH
374
376
2.19
1
A
ASP
18
A
-56.90
108.56
1
A
ASP
18
B
-51.81
102.49
1
A
THR
69
-113.10
78.95
1
A
PRO
70
-33.51
124.35
1
A
LYS
116
-37.56
134.90
protein_rep.param
protein.top
dna-rna_rep.param
dna-rna.top
water_rep.param
water.top
ion.param
ion.top
carbohydrate.param
carbohydrate.top
26.1
-1.50
0.00
-0.00
-1.50
-0.00
2.99
BULK SOLVENT MODEL USED
0.281
0.016
0.204
0.219
0.204
2.10
30.88
302
5792
5407
5.6
76.2
RANDOM
214934.04
0.000000
1
RESTRAINED
THROUGHOUT
2.0
FOURIER SYNTHESIS
FLAT MODEL
39.9381
0.3
0.33
0.25
5.00
0.21
0.20
2.10
30.88
108
1114
5
0
1001
0.013
1.7
22.8
0.95
1
NONE
1
X-RAY DIFFRACTION
0.287
0.047
0.259
2.23
37
584
6
6.0
53.3
5.0
2.10
30.88
4LFX
6133
6133
0
0
1
86.2
refinement
CNS
1.3
data collection
CrystalClear
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
Lysozyme C (E.C.3.2.1.17)
X-ray structure of the adduct between hen egg white lysozyme and Auoxo6, a dinuclear gold(III) complex with -dioxo bridges linking the two metal centers
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
2
N
N
5
N
N
A
GLY
4
A
GLY
4
HELX_P
A
HIS
15
A
HIS
15
1
1
12
A
ASN
19
A
ASN
19
HELX_P
A
TYR
23
A
TYR
23
5
2
5
A
SER
24
A
SER
24
HELX_P
A
ASN
37
A
ASN
37
1
3
14
A
PRO
79
A
PRO
79
HELX_P
A
SER
85
A
SER
85
5
4
7
A
ILE
88
A
ILE
88
HELX_P
A
SER
100
A
SER
100
1
5
13
A
ASN
103
A
ASN
103
HELX_P
A
ALA
107
A
ALA
107
5
6
5
A
TRP
108
A
TRP
108
HELX_P
A
CYS
115
A
CYS
115
1
7
8
A
ASP
119
A
ASP
119
HELX_P
A
ARG
125
A
ARG
125
5
8
7
disulf
2.031
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
127
A
SG
CYS
127
1_555
disulf
2.042
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
115
A
SG
CYS
115
1_555
disulf
2.053
A
CYS
64
A
SG
CYS
64
1_555
A
CYS
80
A
SG
CYS
80
1_555
disulf
2.032
A
CYS
76
A
SG
CYS
76
1_555
A
CYS
94
A
SG
CYS
94
1_555
metalc
2.283
A
HIS
15
A
NE2
HIS
15
1_555
A
AU
204
E
AU
AU
1_555
metalc
3.094
A
ARG
73
A
O
ARG
73
1_555
A
NA
203
D
NA
NA
1_555
metalc
3.127
A
NA
203
D
NA
NA
1_555
A
HOH
317
G
O
HOH
1_555
HYDROLASE
hydrolase
LYSC_CHICK
UNP
1
19
P00698
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
19
147
4LFX
1
129
P00698
A
1
1
129
3
anti-parallel
anti-parallel
A
THR
43
A
THR
43
A
ARG
45
A
ARG
45
A
THR
51
A
THR
51
A
TYR
53
A
TYR
53
A
ILE
58
A
ILE
58
A
ASN
59
A
ASN
59
BINDING SITE FOR RESIDUE CL A 201
Software
5
BINDING SITE FOR RESIDUE CL A 202
Software
2
BINDING SITE FOR RESIDUE NA A 203
Software
5
BINDING SITE FOR RESIDUE AU A 204
Software
5
BINDING SITE FOR RESIDUE CL A 205
Software
3
A
GLY
67
A
GLY
67
5
1_555
A
ARG
68
A
ARG
68
5
1_555
A
THR
69
A
THR
69
5
1_555
A
SER
72
A
SER
72
5
1_555
A
HOH
346
G
HOH
5
1_555
A
TYR
23
A
TYR
23
2
1_555
A
ASN
113
A
ASN
113
2
4_445
A
CYS
64
A
CYS
64
5
1_555
A
ASN
65
A
ASN
65
5
1_555
A
SER
72
A
SER
72
5
1_555
A
ARG
73
A
ARG
73
5
1_555
A
HOH
403
G
HOH
5
1_555
A
ARG
14
A
ARG
14
5
1_555
A
HIS
15
A
HIS
15
5
1_555
A
ASP
87
A
ASP
87
5
1_555
A
ILE
88
A
ILE
88
5
1_555
A
CL
205
F
CL
5
1_555
A
ILE
88
A
ILE
88
3
1_555
A
AU
204
E
AU
3
1_555
A
HOH
338
G
HOH
3
1_555
96
P 43 21 2