0.012914 0.000000 0.000000 0.000000 0.012914 0.000000 0.000000 0.000000 0.026888 0.00000 0.00000 0.00000 Vergara, A. Merlino, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 77.435 77.435 37.191 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Au 1 196.967 GOLD ION non-polymer Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Chem.Commun.(Camb.) 1359-7345 49 10100 10102 10.1039/c3cc46400h 24045294 The mode of action of anticancer gold-based drugs: a structural perspective. 2013 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 2013-02-11 GRAPHITE SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ENRAF-NONIUS FR571 14331.160 Lysozyme C 3.2.1.17 1 nat polymer 196.967 GOLD ION 1 syn non-polymer 35.453 CHLORIDE ION 3 syn non-polymer 18.015 water 167 nat water 1,4-beta-N-acetylmuramidase C, Allergen Gal d IV no no KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n bantam,chickens sample 9031 Gallus gallus 1 1.95 36.76 pdbx_struct_special_symmetry software repository Initial release Database references Data collection Derived calculations Refinement description 1 0 2013-10-02 1 1 2013-10-23 1 2 2019-07-17 _software.classification _software.name _software.version X-ray structure of the adduct between hen egg white lysozyme and AziRu (green crystal) X-ray structure of the adduct between hen egg white lysozyme and AziRu (black crystal) X-ray structure of the adduct between hen egg white lysozyme and a homoleptic gold(I) complex with the saccharynate ligand X-ray structure of the adduct between hen egg white lysozyme and Auoxo6, a dinuclear gold(III) complexes with -dioxo bridges linking the two metal centers RCSB Y RCSB 2013-06-28 REL REL AU GOLD ION CL CHLORIDE ION HOH water THE GOLD COMPOUND FORMING HEWL ADDUCT UNDERGOES EXTENSIVE DEGRADATION UPON REACTION WITH THIS PROTEIN. THERE IS NO EVIDENCE OF THE PRESENCE OF THE ORIGINAL METAL LIGANDS FROM THE CRYSTAL STRUCTURE. THE STRUCTURE OF THE DINUCLEAR GOLD(III) COMPOUND IS COMPLETELY LOST AND THE METAL IS REDUCED OWING TO THE APPRECIABLE OXIDISING CHARACTER OF THESE GOLD(III) CENTERS. IT FOLLOWS THAT PROTEIN IS BOUND TO GOLD IN THE OXIDATION STATE +1 INDEPENDENTLY OF THE NATURE OF THE STARTING COMPOUND, AS DOCUMENTED BY ITS LINEAR COORDINATION. AU1 301 2 AU AU 301 A CL 302 3 CL CL 302 A CL 1 3 CL CL 303 A CL 2 3 CL CL 304 A HOH 4 4 HOH HOH 401 A HOH 6 4 HOH HOH 402 A HOH 7 4 HOH HOH 403 A HOH 8 4 HOH HOH 404 A HOH 11 4 HOH HOH 405 A HOH 12 4 HOH HOH 406 A HOH 18 4 HOH HOH 407 A HOH 19 4 HOH HOH 408 A HOH 23 4 HOH HOH 409 A HOH 32 4 HOH HOH 410 A HOH 33 4 HOH HOH 411 A HOH 34 4 HOH HOH 412 A HOH 35 4 HOH HOH 413 A HOH 36 4 HOH HOH 414 A HOH 37 4 HOH HOH 415 A HOH 38 4 HOH HOH 416 A HOH 39 4 HOH HOH 417 A HOH 40 4 HOH HOH 418 A HOH 41 4 HOH HOH 419 A HOH 42 4 HOH HOH 420 A HOH 43 4 HOH HOH 421 A HOH 44 4 HOH HOH 422 A HOH 45 4 HOH HOH 423 A HOH 46 4 HOH HOH 424 A HOH 47 4 HOH HOH 425 A HOH 48 4 HOH HOH 426 A HOH 49 4 HOH HOH 427 A HOH 50 4 HOH HOH 428 A HOH 51 4 HOH HOH 429 A HOH 52 4 HOH HOH 430 A HOH 53 4 HOH HOH 431 A HOH 54 4 HOH HOH 432 A HOH 55 4 HOH HOH 433 A HOH 56 4 HOH HOH 434 A HOH 58 4 HOH HOH 435 A HOH 59 4 HOH HOH 436 A HOH 62 4 HOH HOH 437 A HOH 63 4 HOH HOH 438 A HOH 64 4 HOH HOH 439 A HOH 65 4 HOH HOH 440 A HOH 66 4 HOH HOH 441 A HOH 67 4 HOH HOH 442 A HOH 68 4 HOH HOH 443 A HOH 69 4 HOH HOH 444 A HOH 70 4 HOH HOH 445 A HOH 71 4 HOH HOH 446 A HOH 72 4 HOH HOH 447 A HOH 73 4 HOH HOH 448 A HOH 74 4 HOH HOH 449 A HOH 75 4 HOH HOH 450 A HOH 76 4 HOH HOH 451 A HOH 79 4 HOH HOH 452 A HOH 80 4 HOH HOH 453 A HOH 81 4 HOH HOH 454 A HOH 82 4 HOH HOH 455 A HOH 83 4 HOH HOH 456 A HOH 84 4 HOH HOH 457 A HOH 85 4 HOH HOH 458 A HOH 86 4 HOH HOH 459 A HOH 87 4 HOH HOH 460 A HOH 89 4 HOH HOH 461 A HOH 90 4 HOH HOH 462 A HOH 91 4 HOH HOH 463 A HOH 92 4 HOH HOH 464 A HOH 93 4 HOH HOH 465 A HOH 94 4 HOH HOH 466 A HOH 95 4 HOH HOH 467 A HOH 97 4 HOH HOH 468 A HOH 98 4 HOH HOH 469 A HOH 99 4 HOH HOH 470 A HOH 100 4 HOH HOH 471 A HOH 101 4 HOH HOH 472 A HOH 102 4 HOH HOH 473 A HOH 103 4 HOH HOH 474 A HOH 104 4 HOH HOH 475 A HOH 105 4 HOH HOH 476 A HOH 107 4 HOH HOH 477 A HOH 108 4 HOH HOH 478 A HOH 109 4 HOH HOH 479 A HOH 110 4 HOH HOH 480 A HOH 111 4 HOH HOH 481 A HOH 112 4 HOH HOH 482 A HOH 113 4 HOH HOH 483 A HOH 114 4 HOH HOH 484 A HOH 115 4 HOH HOH 485 A HOH 116 4 HOH HOH 486 A HOH 117 4 HOH HOH 487 A HOH 118 4 HOH HOH 488 A HOH 119 4 HOH HOH 489 A HOH 120 4 HOH HOH 490 A HOH 121 4 HOH HOH 491 A HOH 122 4 HOH HOH 492 A HOH 123 4 HOH HOH 493 A HOH 124 4 HOH HOH 494 A HOH 125 4 HOH HOH 495 A HOH 126 4 HOH HOH 496 A HOH 127 4 HOH HOH 497 A HOH 128 4 HOH HOH 498 A HOH 129 4 HOH HOH 499 A HOH 130 4 HOH HOH 500 A HOH 131 4 HOH HOH 501 A HOH 132 4 HOH HOH 502 A HOH 133 4 HOH HOH 503 A HOH 134 4 HOH HOH 504 A HOH 135 4 HOH HOH 505 A HOH 136 4 HOH HOH 506 A HOH 137 4 HOH HOH 507 A HOH 138 4 HOH HOH 508 A HOH 139 4 HOH HOH 509 A HOH 141 4 HOH HOH 510 A HOH 143 4 HOH HOH 511 A HOH 144 4 HOH HOH 512 A HOH 145 4 HOH HOH 513 A HOH 146 4 HOH HOH 514 A HOH 147 4 HOH HOH 515 A HOH 148 4 HOH HOH 516 A HOH 149 4 HOH HOH 517 A HOH 150 4 HOH HOH 518 A HOH 151 4 HOH HOH 519 A HOH 152 4 HOH HOH 520 A HOH 153 4 HOH HOH 521 A HOH 154 4 HOH HOH 522 A HOH 155 4 HOH HOH 523 A HOH 156 4 HOH HOH 524 A HOH 157 4 HOH HOH 525 A HOH 158 4 HOH HOH 526 A HOH 159 4 HOH HOH 527 A HOH 160 4 HOH HOH 528 A HOH 161 4 HOH HOH 529 A HOH 162 4 HOH HOH 530 A HOH 163 4 HOH HOH 531 A HOH 164 4 HOH HOH 532 A HOH 165 4 HOH HOH 533 A HOH 166 4 HOH HOH 534 A HOH 167 4 HOH HOH 535 A HOH 169 4 HOH HOH 536 A HOH 170 4 HOH HOH 537 A HOH 171 4 HOH HOH 538 A HOH 172 4 HOH HOH 539 A HOH 173 4 HOH HOH 540 A HOH 174 4 HOH HOH 541 A HOH 175 4 HOH HOH 542 A HOH 176 4 HOH HOH 543 A HOH 178 4 HOH HOH 544 A HOH 179 4 HOH HOH 545 A HOH 180 4 HOH HOH 546 A HOH 181 4 HOH HOH 547 A HOH 182 4 HOH HOH 548 A HOH 183 4 HOH HOH 549 A HOH 184 4 HOH HOH 550 A HOH 185 4 HOH HOH 551 A HOH 186 4 HOH HOH 552 A HOH 187 4 HOH HOH 553 A HOH 188 4 HOH HOH 554 A HOH 190 4 HOH HOH 555 A HOH 191 4 HOH HOH 556 A HOH 192 4 HOH HOH 557 A HOH 193 4 HOH HOH 558 A HOH 194 4 HOH HOH 559 A HOH 195 4 HOH HOH 560 A HOH 197 4 HOH HOH 561 A HOH 198 4 HOH HOH 562 A HOH 199 4 HOH HOH 563 A HOH 200 4 HOH HOH 564 A HOH 201 4 HOH HOH 565 A HOH 202 4 HOH HOH 566 A HOH 203 4 HOH HOH 567 A LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A PHE 3 n 3 PHE 3 A GLY 4 n 4 GLY 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A ALA 10 n 10 ALA 10 A ALA 11 n 11 ALA 11 A MET 12 n 12 MET 12 A LYS 13 n 13 LYS 13 A ARG 14 n 14 ARG 14 A HIS 15 n 15 HIS 15 A GLY 16 n 16 GLY 16 A LEU 17 n 17 LEU 17 A ASP 18 n 18 ASP 18 A ASN 19 n 19 ASN 19 A TYR 20 n 20 TYR 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A TYR 23 n 23 TYR 23 A SER 24 n 24 SER 24 A LEU 25 n 25 LEU 25 A GLY 26 n 26 GLY 26 A ASN 27 n 27 ASN 27 A TRP 28 n 28 TRP 28 A VAL 29 n 29 VAL 29 A CYS 30 n 30 CYS 30 A ALA 31 n 31 ALA 31 A ALA 32 n 32 ALA 32 A LYS 33 n 33 LYS 33 A PHE 34 n 34 PHE 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A ASN 37 n 37 ASN 37 A PHE 38 n 38 PHE 38 A ASN 39 n 39 ASN 39 A THR 40 n 40 THR 40 A GLN 41 n 41 GLN 41 A ALA 42 n 42 ALA 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A ARG 45 n 45 ARG 45 A ASN 46 n 46 ASN 46 A THR 47 n 47 THR 47 A ASP 48 n 48 ASP 48 A GLY 49 n 49 GLY 49 A SER 50 n 50 SER 50 A THR 51 n 51 THR 51 A ASP 52 n 52 ASP 52 A TYR 53 n 53 TYR 53 A GLY 54 n 54 GLY 54 A ILE 55 n 55 ILE 55 A LEU 56 n 56 LEU 56 A GLN 57 n 57 GLN 57 A ILE 58 n 58 ILE 58 A ASN 59 n 59 ASN 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A TRP 62 n 62 TRP 62 A TRP 63 n 63 TRP 63 A CYS 64 n 64 CYS 64 A ASN 65 n 65 ASN 65 A ASP 66 n 66 ASP 66 A GLY 67 n 67 GLY 67 A ARG 68 n 68 ARG 68 A THR 69 n 69 THR 69 A PRO 70 n 70 PRO 70 A GLY 71 n 71 GLY 71 A SER 72 n 72 SER 72 A ARG 73 n 73 ARG 73 A ASN 74 n 74 ASN 74 A LEU 75 n 75 LEU 75 A CYS 76 n 76 CYS 76 A ASN 77 n 77 ASN 77 A ILE 78 n 78 ILE 78 A PRO 79 n 79 PRO 79 A CYS 80 n 80 CYS 80 A SER 81 n 81 SER 81 A ALA 82 n 82 ALA 82 A LEU 83 n 83 LEU 83 A LEU 84 n 84 LEU 84 A SER 85 n 85 SER 85 A SER 86 n 86 SER 86 A ASP 87 n 87 ASP 87 A ILE 88 n 88 ILE 88 A THR 89 n 89 THR 89 A ALA 90 n 90 ALA 90 A SER 91 n 91 SER 91 A VAL 92 n 92 VAL 92 A ASN 93 n 93 ASN 93 A CYS 94 n 94 CYS 94 A ALA 95 n 95 ALA 95 A LYS 96 n 96 LYS 96 A LYS 97 n 97 LYS 97 A ILE 98 n 98 ILE 98 A VAL 99 n 99 VAL 99 A SER 100 n 100 SER 100 A ASP 101 n 101 ASP 101 A GLY 102 n 102 GLY 102 A ASN 103 n 103 ASN 103 A GLY 104 n 104 GLY 104 A MET 105 n 105 MET 105 A ASN 106 n 106 ASN 106 A ALA 107 n 107 ALA 107 A TRP 108 n 108 TRP 108 A VAL 109 n 109 VAL 109 A ALA 110 n 110 ALA 110 A TRP 111 n 111 TRP 111 A ARG 112 n 112 ARG 112 A ASN 113 n 113 ASN 113 A ARG 114 n 114 ARG 114 A CYS 115 n 115 CYS 115 A LYS 116 n 116 LYS 116 A GLY 117 n 117 GLY 117 A THR 118 n 118 THR 118 A ASP 119 n 119 ASP 119 A VAL 120 n 120 VAL 120 A GLN 121 n 121 GLN 121 A ALA 122 n 122 ALA 122 A TRP 123 n 123 TRP 123 A ILE 124 n 124 ILE 124 A ARG 125 n 125 ARG 125 A GLY 126 n 126 GLY 126 A CYS 127 n 127 CYS 127 A ARG 128 n 128 ARG 128 A LEU 129 n 129 LEU 129 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASN 44 A N ASN 44 A O ASP 52 A O ASP 52 A N TYR 53 A N TYR 53 A O ILE 58 A O ILE 58 1 A HOH 489 F HOH 1 A HOH 497 F HOH 1 A HOH 527 F HOH 1 A A O O HOH HOH 422 519 2.13 1 A A ND1 O HIS HOH 15 413 2.16 1 A A OXT OXT LEU LEU 129 129 2.01 1_555 7_554 1 A ASN 19 56.93 15.70 1 A ARG 21 47.33 22.87 1 A SER 36 -140.06 -4.15 1 A ILE 55 -28.46 -44.46 1 A ARG 68 -150.91 3.90 23.640 0.07 0.00 0.00 0.07 0.00 -0.14 0.934 0.874 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.30032 0.21114 0.21506 1.96 25.35 325 6719 4.6 82.54 5.650 0.143 RANDOM 1 THROUGHOUT FOURIER SYNTHESIS 0.075 0.057 0.80 0.80 1.40 MAXIMUM LIKELIHOOD MASK 1.96 25.35 167 1172 4 0 1001 0.021 0.021 1050 1.938 1.908 1429 7.099 5.000 134 34.503 23.000 50 16.141 15.000 171 13.696 15.000 11 0.136 0.200 149 0.009 0.020 822 1.073 1.500 653 1.775 2.000 1044 2.839 3.000 397 4.224 4.500 385 0.453 0.318 2.011 32 520 20 93.09 1.96 26.8 4LGK 7204 7204 0 0 0.113 1 84.3 refinement REFMAC 5.5.0109 refinement CNS data collection CrystalClear data reduction HKL-2000 data scaling HKL-2000 phasing CNS Lysozyme C (E.C.3.2.1.17) X-ray structure of the adduct between hen egg white lysozyme and Au2Phen, a dinuclear gold(III) complex with -dioxo bridges linking the two metal centers 1 N N 2 N N 3 N N 3 N N 3 N N 4 N N A GLY 4 A GLY 4 HELX_P A HIS 15 A HIS 15 1 1 12 A ASN 19 A ASN 19 HELX_P A TYR 23 A TYR 23 5 2 5 A SER 24 A SER 24 HELX_P A ASN 37 A ASN 37 1 3 14 A PRO 79 A PRO 79 HELX_P A SER 85 A SER 85 5 4 7 A ILE 88 A ILE 88 HELX_P A SER 100 A SER 100 1 5 13 A ASN 103 A ASN 103 HELX_P A ALA 107 A ALA 107 5 6 5 A TRP 108 A TRP 108 HELX_P A CYS 115 A CYS 115 1 7 8 A ASP 119 A ASP 119 HELX_P A ARG 125 A ARG 125 5 8 7 disulf 1.992 A CYS 6 A SG CYS 6 1_555 A CYS 127 A SG CYS 127 1_555 disulf 2.035 A CYS 30 A SG CYS 30 1_555 A CYS 115 A SG CYS 115 1_555 disulf 2.030 A CYS 64 A SG CYS 64 1_555 A CYS 80 A SG CYS 80 1_555 disulf 2.042 A CYS 76 A SG CYS 76 1_555 A CYS 94 A SG CYS 94 1_555 HYDROLASE hydrolase LYSC_CHICK UNP 1 19 P00698 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 19 147 4LGK 1 129 P00698 A 1 1 129 3 anti-parallel anti-parallel A THR 43 A THR 43 A ARG 45 A ARG 45 A THR 51 A THR 51 A TYR 53 A TYR 53 A ILE 58 A ILE 58 A ASN 59 A ASN 59 BINDING SITE FOR RESIDUE AU A 301 Software 4 BINDING SITE FOR RESIDUE CL A 302 Software 3 BINDING SITE FOR RESIDUE CL A 303 Software 3 BINDING SITE FOR RESIDUE CL A 304 Software 6 A ARG 14 A ARG 14 4 1_555 A HIS 15 A HIS 15 4 1_555 A ILE 88 A ILE 88 4 1_555 A CL 302 C CL 4 1_555 A PHE 3 A PHE 3 3 1_555 A ILE 88 A ILE 88 3 1_555 A AU 301 B AU 3 1_555 A TYR 23 A TYR 23 3 1_555 A ALA 110 A ALA 110 3 4_445 A ASN 113 A ASN 113 3 4_445 A ASN 65 A ASN 65 6 1_555 A GLY 67 A GLY 67 6 1_555 A ARG 68 A ARG 68 6 1_555 A THR 69 A THR 69 6 1_555 A SER 72 A SER 72 6 1_555 A HOH 499 F HOH 6 1_555 96 P 43 21 2