0.021739 0.012551 0.000000 0.000000 0.025102 0.000000 0.000000 0.000000 0.007498 0.00000 0.00000 0.00000 Rana, R.R. Stieglitz, B. Koliopoulos, M.G. Morris-Davies, A.C. Christodoulou, E. Howell, S. Brown, N.R. Rittinger, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 3 90.00 90.00 120.00 46.000 46.000 133.370 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing UK Nature NATUAS 0006 0028-0836 503 422 426 10.1038/nature12638 24141947 Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP. 2013 10.2210/pdb4ljp/pdb pdb_00004ljp 100 1 PIXEL 2012-12-10 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.920 1.0 I04-1 Diamond 0.920 SYNCHROTRON DIAMOND BEAMLINE I04-1 25032.590 E3 ubiquitin-protein ligase RNF31 6.3.2.- E3 ligase HOIP catalytic core (unp residues 853-1072) H889A 1 man polymer 8576.831 Polyubiquitin-C unp residues 77-152 1 nat polymer 65.409 ZINC ION 4 syn non-polymer 18.015 water 120 nat water HOIL-1-interacting protein, HOIP, RING finger protein 31, Zinc in-between-RING-finger ubiquitin-associated domain protein no no GPGPEYQAQGLAMYLQENGIDCPKCKFSYALARGGCMHFACTQCRHQFCSGCYNAFYAKNKCPEPNCRVKKSLHGHHPRD CLFYLRDWTALRLQKLLQDNNVMFNTEPPAGARAVPGGGCRVIEQKEVPNGLRDEACGKETPAGYAGLCQAHYKEYLVSL INAHSLDPATLYEVEELETATERYLHVRPQPLAGEDPPAYQARLLQKLTEEVPLGQSIPRRRK GPGPEYQAQGLAMYLQENGIDCPKCKFSYALARGGCMHFACTQCRHQFCSGCYNAFYAKNKCPEPNCRVKKSLHGHHPRD CLFYLRDWTALRLQKLLQDNNVMFNTEPPAGARAVPGGGCRVIEQKEVPNGLRDEACGKETPAGYAGLCQAHYKEYLVSL INAHSLDPATLYEVEELETATERYLHVRPQPLAGEDPPAYQARLLQKLTEEVPLGQSIPRRRK A polypeptide(L) no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample RNF31, ZIBRA 9606 Homo sapiens 511693 Escherichia coli BL21 Gold plasmid pET-49b bovine,cow,domestic cattle,domestic cow sample 9913 Bos taurus 1 2.49 50.55 VAPOR DIFFUSION, SITTING DROP 6.5 0.1 M amino acids, 0.1 M imidazole, MES, 30 % P550 MME_P20K , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K 293 software software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Database references Other Refinement description Data collection Refinement description Data collection Database references Derived calculations Refinement description 1 0 2013-10-16 1 1 2013-11-13 1 2 2013-12-18 1 3 2014-12-10 1 4 2017-11-15 1 5 2019-07-17 1 6 2023-09-20 _software.classification _software.classification _software.contact_author _software.contact_author_email _software.date _software.location _software.name _software.type _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2013-07-05 REL REL ZN ZINC ION HOH water 4LJO pdb entry 4LJO PDB experimental model ZN 1 3 ZN ZN 1101 A ZN 1 3 ZN ZN 1102 A ZN 1 3 ZN ZN 1103 A ZN 1 3 ZN ZN 1104 A HOH 2 4 HOH HOH 1201 A HOH 3 4 HOH HOH 1202 A HOH 4 4 HOH HOH 1203 A HOH 5 4 HOH HOH 1204 A HOH 6 4 HOH HOH 1205 A HOH 7 4 HOH HOH 1206 A HOH 8 4 HOH HOH 1207 A HOH 9 4 HOH HOH 1208 A HOH 14 4 HOH HOH 1209 A HOH 16 4 HOH HOH 1210 A HOH 17 4 HOH HOH 1211 A HOH 18 4 HOH HOH 1212 A HOH 19 4 HOH HOH 1213 A HOH 22 4 HOH HOH 1214 A HOH 23 4 HOH HOH 1215 A HOH 25 4 HOH HOH 1216 A HOH 26 4 HOH HOH 1217 A HOH 27 4 HOH HOH 1218 A HOH 29 4 HOH HOH 1219 A HOH 31 4 HOH HOH 1220 A HOH 32 4 HOH HOH 1221 A HOH 34 4 HOH HOH 1222 A HOH 35 4 HOH HOH 1223 A HOH 36 4 HOH HOH 1224 A HOH 37 4 HOH HOH 1225 A HOH 38 4 HOH HOH 1226 A HOH 39 4 HOH HOH 1227 A HOH 40 4 HOH HOH 1228 A HOH 42 4 HOH HOH 1229 A HOH 43 4 HOH HOH 1230 A HOH 45 4 HOH HOH 1231 A HOH 47 4 HOH HOH 1232 A HOH 48 4 HOH HOH 1233 A HOH 49 4 HOH HOH 1234 A HOH 52 4 HOH HOH 1235 A HOH 53 4 HOH HOH 1236 A HOH 54 4 HOH HOH 1237 A HOH 55 4 HOH HOH 1238 A HOH 57 4 HOH HOH 1239 A HOH 58 4 HOH HOH 1240 A HOH 59 4 HOH HOH 1241 A HOH 60 4 HOH HOH 1242 A HOH 61 4 HOH HOH 1243 A HOH 62 4 HOH HOH 1244 A HOH 63 4 HOH HOH 1245 A HOH 65 4 HOH HOH 1246 A HOH 66 4 HOH HOH 1247 A HOH 67 4 HOH HOH 1248 A HOH 68 4 HOH HOH 1249 A HOH 70 4 HOH HOH 1250 A HOH 72 4 HOH HOH 1251 A HOH 75 4 HOH HOH 1252 A HOH 76 4 HOH HOH 1253 A HOH 77 4 HOH HOH 1254 A HOH 78 4 HOH HOH 1255 A HOH 79 4 HOH HOH 1256 A HOH 80 4 HOH HOH 1257 A HOH 81 4 HOH HOH 1258 A HOH 82 4 HOH HOH 1259 A HOH 85 4 HOH HOH 1260 A HOH 87 4 HOH HOH 1261 A HOH 90 4 HOH HOH 1262 A HOH 91 4 HOH HOH 1263 A HOH 92 4 HOH HOH 1264 A HOH 93 4 HOH HOH 1265 A HOH 95 4 HOH HOH 1266 A HOH 96 4 HOH HOH 1267 A HOH 97 4 HOH HOH 1268 A HOH 98 4 HOH HOH 1269 A HOH 99 4 HOH HOH 1270 A HOH 100 4 HOH HOH 1271 A HOH 102 4 HOH HOH 1272 A HOH 104 4 HOH HOH 1273 A HOH 106 4 HOH HOH 1274 A HOH 109 4 HOH HOH 1275 A HOH 111 4 HOH HOH 1276 A HOH 115 4 HOH HOH 1277 A HOH 117 4 HOH HOH 1278 A HOH 119 4 HOH HOH 1279 A HOH 128 4 HOH HOH 1280 A HOH 129 4 HOH HOH 1281 A HOH 130 4 HOH HOH 1282 A HOH 132 4 HOH HOH 1283 A HOH 139 4 HOH HOH 1284 A HOH 141 4 HOH HOH 1285 A HOH 149 4 HOH HOH 1286 A HOH 150 4 HOH HOH 1287 A HOH 151 4 HOH HOH 1288 A HOH 153 4 HOH HOH 1289 A HOH 155 4 HOH HOH 1290 A HOH 160 4 HOH HOH 1291 A HOH 1 4 HOH HOH 101 B HOH 11 4 HOH HOH 102 B HOH 15 4 HOH HOH 103 B HOH 20 4 HOH HOH 104 B HOH 21 4 HOH HOH 105 B HOH 24 4 HOH HOH 106 B HOH 28 4 HOH HOH 107 B HOH 30 4 HOH HOH 108 B HOH 33 4 HOH HOH 109 B HOH 41 4 HOH HOH 110 B HOH 44 4 HOH HOH 111 B HOH 46 4 HOH HOH 112 B HOH 50 4 HOH HOH 113 B HOH 51 4 HOH HOH 114 B HOH 56 4 HOH HOH 115 B HOH 69 4 HOH HOH 116 B HOH 71 4 HOH HOH 117 B HOH 73 4 HOH HOH 118 B HOH 74 4 HOH HOH 119 B HOH 83 4 HOH HOH 120 B HOH 84 4 HOH HOH 121 B HOH 86 4 HOH HOH 122 B HOH 88 4 HOH HOH 123 B HOH 89 4 HOH HOH 124 B HOH 107 4 HOH HOH 125 B HOH 108 4 HOH HOH 126 B HOH 136 4 HOH HOH 127 B HOH 138 4 HOH HOH 128 B HOH 140 4 HOH HOH 129 B 6.100 6.100 38.170 38.170 Phaser MODE: MR_AUTO n 1 850 A n 2 851 A n 3 852 A n 4 853 A n 5 854 A n 6 855 A n 7 856 A ALA 857 n 8 ALA 857 A GLN 858 n 9 GLN 858 A GLY 859 n 10 GLY 859 A LEU 860 n 11 LEU 860 A ALA 861 n 12 ALA 861 A MET 862 n 13 MET 862 A TYR 863 n 14 TYR 863 A LEU 864 n 15 LEU 864 A GLN 865 n 16 GLN 865 A GLU 866 n 17 GLU 866 A ASN 867 n 18 ASN 867 A GLY 868 n 19 GLY 868 A ILE 869 n 20 ILE 869 A ASP 870 n 21 ASP 870 A CYS 871 n 22 CYS 871 A PRO 872 n 23 PRO 872 A LYS 873 n 24 LYS 873 A CYS 874 n 25 CYS 874 A LYS 875 n 26 LYS 875 A PHE 876 n 27 PHE 876 A SER 877 n 28 SER 877 A TYR 878 n 29 TYR 878 A ALA 879 n 30 ALA 879 A LEU 880 n 31 LEU 880 A ALA 881 n 32 ALA 881 A ARG 882 n 33 ARG 882 A GLY 883 n 34 GLY 883 A GLY 884 n 35 GLY 884 A CYS 885 n 36 CYS 885 A MET 886 n 37 MET 886 A HIS 887 n 38 HIS 887 A PHE 888 n 39 PHE 888 A ALA 889 n 40 ALA 889 A CYS 890 n 41 CYS 890 A THR 891 n 42 THR 891 A GLN 892 n 43 GLN 892 A CYS 893 n 44 CYS 893 A ARG 894 n 45 ARG 894 A HIS 895 n 46 HIS 895 A GLN 896 n 47 GLN 896 A PHE 897 n 48 PHE 897 A CYS 898 n 49 CYS 898 A SER 899 n 50 SER 899 A GLY 900 n 51 GLY 900 A CYS 901 n 52 CYS 901 A TYR 902 n 53 TYR 902 A ASN 903 n 54 ASN 903 A ALA 904 n 55 ALA 904 A PHE 905 n 56 PHE 905 A TYR 906 n 57 TYR 906 A ALA 907 n 58 ALA 907 A LYS 908 n 59 LYS 908 A ASN 909 n 60 ASN 909 A LYS 910 n 61 LYS 910 A CYS 911 n 62 CYS 911 A PRO 912 n 63 PRO 912 A GLU 913 n 64 GLU 913 A PRO 914 n 65 PRO 914 A ASN 915 n 66 ASN 915 A CYS 916 n 67 CYS 916 A ARG 917 n 68 ARG 917 A VAL 918 n 69 VAL 918 A LYS 919 n 70 LYS 919 A LYS 920 n 71 LYS 920 A SER 921 n 72 SER 921 A LEU 922 n 73 LEU 922 A HIS 923 n 74 HIS 923 A GLY 924 n 75 GLY 924 A HIS 925 n 76 HIS 925 A HIS 926 n 77 HIS 926 A PRO 927 n 78 PRO 927 A ARG 928 n 79 ARG 928 A ASP 929 n 80 ASP 929 A CYS 930 n 81 CYS 930 A LEU 931 n 82 LEU 931 A PHE 932 n 83 PHE 932 A TYR 933 n 84 TYR 933 A LEU 934 n 85 LEU 934 A ARG 935 n 86 ARG 935 A ASP 936 n 87 ASP 936 A TRP 937 n 88 TRP 937 A THR 938 n 89 THR 938 A ALA 939 n 90 ALA 939 A LEU 940 n 91 LEU 940 A ARG 941 n 92 ARG 941 A LEU 942 n 93 LEU 942 A GLN 943 n 94 GLN 943 A LYS 944 n 95 LYS 944 A LEU 945 n 96 LEU 945 A LEU 946 n 97 LEU 946 A GLN 947 n 98 GLN 947 A ASP 948 n 99 ASP 948 A ASN 949 n 100 ASN 949 A ASN 950 n 101 ASN 950 A VAL 951 n 102 VAL 951 A MET 952 n 103 MET 952 A PHE 953 n 104 PHE 953 A ASN 954 n 105 ASN 954 A THR 955 n 106 THR 955 A GLU 956 n 107 GLU 956 A PRO 957 n 108 PRO 957 A PRO 958 n 109 PRO 958 A ALA 959 n 110 ALA 959 A GLY 960 n 111 GLY 960 A ALA 961 n 112 ALA 961 A ARG 962 n 113 ARG 962 A ALA 963 n 114 ALA 963 A VAL 964 n 115 VAL 964 A PRO 965 n 116 PRO 965 A GLY 966 n 117 GLY 966 A GLY 967 n 118 GLY 967 A GLY 968 n 119 GLY 968 A CYS 969 n 120 CYS 969 A ARG 970 n 121 ARG 970 A VAL 971 n 122 VAL 971 A ILE 972 n 123 ILE 972 A GLU 973 n 124 GLU 973 A GLN 974 n 125 GLN 974 A LYS 975 n 126 LYS 975 A GLU 976 n 127 GLU 976 A VAL 977 n 128 VAL 977 A PRO 978 n 129 PRO 978 A ASN 979 n 130 ASN 979 A GLY 980 n 131 GLY 980 A LEU 981 n 132 LEU 981 A ARG 982 n 133 ARG 982 A ASP 983 n 134 ASP 983 A GLU 984 n 135 GLU 984 A ALA 985 n 136 ALA 985 A CYS 986 n 137 CYS 986 A GLY 987 n 138 GLY 987 A LYS 988 n 139 LYS 988 A GLU 989 n 140 GLU 989 A THR 990 n 141 THR 990 A PRO 991 n 142 PRO 991 A ALA 992 n 143 ALA 992 A GLY 993 n 144 GLY 993 A TYR 994 n 145 TYR 994 A ALA 995 n 146 ALA 995 A GLY 996 n 147 GLY 996 A LEU 997 n 148 LEU 997 A CYS 998 n 149 CYS 998 A GLN 999 n 150 GLN 999 A ALA 1000 n 151 ALA 1000 A HIS 1001 n 152 HIS 1001 A TYR 1002 n 153 TYR 1002 A LYS 1003 n 154 LYS 1003 A GLU 1004 n 155 GLU 1004 A TYR 1005 n 156 TYR 1005 A LEU 1006 n 157 LEU 1006 A VAL 1007 n 158 VAL 1007 A SER 1008 n 159 SER 1008 A LEU 1009 n 160 LEU 1009 A ILE 1010 n 161 ILE 1010 A ASN 1011 n 162 ASN 1011 A ALA 1012 n 163 ALA 1012 A HIS 1013 n 164 HIS 1013 A SER 1014 n 165 SER 1014 A LEU 1015 n 166 LEU 1015 A ASP 1016 n 167 ASP 1016 A PRO 1017 n 168 PRO 1017 A ALA 1018 n 169 ALA 1018 A THR 1019 n 170 THR 1019 A LEU 1020 n 171 LEU 1020 A TYR 1021 n 172 TYR 1021 A GLU 1022 n 173 GLU 1022 A VAL 1023 n 174 VAL 1023 A GLU 1024 n 175 GLU 1024 A GLU 1025 n 176 GLU 1025 A LEU 1026 n 177 LEU 1026 A GLU 1027 n 178 GLU 1027 A THR 1028 n 179 THR 1028 A ALA 1029 n 180 ALA 1029 A THR 1030 n 181 THR 1030 A GLU 1031 n 182 GLU 1031 A ARG 1032 n 183 ARG 1032 A TYR 1033 n 184 TYR 1033 A LEU 1034 n 185 LEU 1034 A HIS 1035 n 186 HIS 1035 A VAL 1036 n 187 VAL 1036 A ARG 1037 n 188 ARG 1037 A PRO 1038 n 189 PRO 1038 A GLN 1039 n 190 GLN 1039 A PRO 1040 n 191 PRO 1040 A LEU 1041 n 192 LEU 1041 A ALA 1042 n 193 ALA 1042 A GLY 1043 n 194 GLY 1043 A GLU 1044 n 195 GLU 1044 A ASP 1045 n 196 ASP 1045 A PRO 1046 n 197 PRO 1046 A PRO 1047 n 198 PRO 1047 A ALA 1048 n 199 ALA 1048 A TYR 1049 n 200 TYR 1049 A GLN 1050 n 201 GLN 1050 A ALA 1051 n 202 ALA 1051 A ARG 1052 n 203 ARG 1052 A LEU 1053 n 204 LEU 1053 A LEU 1054 n 205 LEU 1054 A GLN 1055 n 206 GLN 1055 A LYS 1056 n 207 LYS 1056 A LEU 1057 n 208 LEU 1057 A THR 1058 n 209 THR 1058 A GLU 1059 n 210 GLU 1059 A GLU 1060 n 211 GLU 1060 A VAL 1061 n 212 VAL 1061 A PRO 1062 n 213 PRO 1062 A LEU 1063 n 214 LEU 1063 A GLY 1064 n 215 GLY 1064 A GLN 1065 n 216 GLN 1065 A SER 1066 n 217 SER 1066 A ILE 1067 n 218 ILE 1067 A PRO 1068 n 219 PRO 1068 A ARG 1069 n 220 ARG 1069 A ARG 1070 n 221 ARG 1070 A ARG 1071 n 222 ARG 1071 A n 223 1072 A MET 1 n 1 MET 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B PHE 4 n 4 PHE 4 B VAL 5 n 5 VAL 5 B LYS 6 n 6 LYS 6 B THR 7 n 7 THR 7 B LEU 8 n 8 LEU 8 B THR 9 n 9 THR 9 B GLY 10 n 10 GLY 10 B LYS 11 n 11 LYS 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B THR 14 n 14 THR 14 B LEU 15 n 15 LEU 15 B GLU 16 n 16 GLU 16 B VAL 17 n 17 VAL 17 B GLU 18 n 18 GLU 18 B PRO 19 n 19 PRO 19 B SER 20 n 20 SER 20 B ASP 21 n 21 ASP 21 B THR 22 n 22 THR 22 B ILE 23 n 23 ILE 23 B GLU 24 n 24 GLU 24 B ASN 25 n 25 ASN 25 B VAL 26 n 26 VAL 26 B LYS 27 n 27 LYS 27 B ALA 28 n 28 ALA 28 B LYS 29 n 29 LYS 29 B ILE 30 n 30 ILE 30 B GLN 31 n 31 GLN 31 B ASP 32 n 32 ASP 32 B LYS 33 n 33 LYS 33 B GLU 34 n 34 GLU 34 B GLY 35 n 35 GLY 35 B ILE 36 n 36 ILE 36 B PRO 37 n 37 PRO 37 B PRO 38 n 38 PRO 38 B ASP 39 n 39 ASP 39 B GLN 40 n 40 GLN 40 B GLN 41 n 41 GLN 41 B ARG 42 n 42 ARG 42 B LEU 43 n 43 LEU 43 B ILE 44 n 44 ILE 44 B PHE 45 n 45 PHE 45 B ALA 46 n 46 ALA 46 B GLY 47 n 47 GLY 47 B LYS 48 n 48 LYS 48 B GLN 49 n 49 GLN 49 B LEU 50 n 50 LEU 50 B GLU 51 n 51 GLU 51 B ASP 52 n 52 ASP 52 B GLY 53 n 53 GLY 53 B ARG 54 n 54 ARG 54 B THR 55 n 55 THR 55 B LEU 56 n 56 LEU 56 B SER 57 n 57 SER 57 B ASP 58 n 58 ASP 58 B TYR 59 n 59 TYR 59 B ASN 60 n 60 ASN 60 B ILE 61 n 61 ILE 61 B GLN 62 n 62 GLN 62 B LYS 63 n 63 LYS 63 B GLU 64 n 64 GLU 64 B SER 65 n 65 SER 65 B THR 66 n 66 THR 66 B LEU 67 n 67 LEU 67 B HIS 68 n 68 HIS 68 B LEU 69 n 69 LEU 69 B VAL 70 n 70 VAL 70 B LEU 71 n 71 LEU 71 B ARG 72 n 72 ARG 72 B LEU 73 n 73 LEU 73 B ARG 74 n 74 ARG 74 B GLY 75 n 75 GLY 75 B GLY 76 n 76 GLY 76 B 3.2813 -4.3493 -1.6660 8.4769 2.8500 6.2392 -0.2512 -0.1126 0.1807 0.5493 0.0696 -0.0410 -0.1156 0.1193 0.1905 0.4082 0.1075 0.0626 0.3121 0.0325 0.2815 refined -15.1544 46.8080 17.3213 X-RAY DIFFRACTION 7.4308 -1.2919 -0.7063 2.8978 0.7702 4.6080 -0.0298 0.5963 0.2553 -0.2045 -0.0370 0.5624 -0.3459 -0.6010 0.0750 0.3259 0.0895 -0.0359 0.3129 0.0361 0.2879 refined -17.9879 50.1785 0.8215 X-RAY DIFFRACTION 3.2305 0.5525 -0.8910 3.2007 -0.0276 3.7752 -0.2732 -0.3719 -0.7253 0.3886 -0.0928 -0.2067 0.8663 0.6626 0.2949 0.5578 0.2556 0.0657 0.3988 0.0480 0.3673 refined -5.8153 33.1396 11.7477 X-RAY DIFFRACTION 3.2761 0.5522 -2.6105 3.1328 -2.1083 5.4621 0.1291 0.6358 0.4333 -0.5508 0.1745 0.0160 -0.9803 -0.5737 -0.2743 0.4972 0.0614 0.0547 0.4953 0.0505 0.3222 refined -3.2669 51.5709 -12.0920 X-RAY DIFFRACTION 9.2478 -0.0773 -5.5385 2.3366 0.0353 3.3106 0.2661 -0.9347 -0.1150 0.8162 0.0901 -0.0179 -1.4920 1.2225 0.0208 0.5467 -0.0210 0.0010 0.4919 -0.0559 0.3128 refined -3.7607 54.3204 7.9290 X-RAY DIFFRACTION 9.4767 0.5903 0.4481 4.3487 0.0320 1.9897 -0.1867 0.2015 -0.2740 0.4327 0.0141 -0.3353 0.2238 0.0338 0.1624 0.3760 0.1185 -0.0194 0.3618 -0.0258 0.2904 refined -16.9424 34.0321 -3.7097 X-RAY DIFFRACTION 7.7810 5.8802 -1.6499 5.0357 -2.1213 6.5382 -0.2722 0.3032 0.4405 0.1858 0.0139 0.2479 -0.5391 -0.7405 0.1736 0.3055 0.1824 -0.0759 0.4438 -0.0958 0.3493 refined -23.8293 42.6363 -6.1267 X-RAY DIFFRACTION 6.1056 3.3154 -2.1568 3.6808 -4.2848 6.5816 -0.3597 1.3697 0.1221 -0.5751 0.3059 0.4126 0.2213 -0.5640 -0.1019 0.2324 -0.0051 -0.0310 0.6422 -0.0778 0.3720 refined -21.8015 38.6168 -15.6378 X-RAY DIFFRACTION 6.4128 -5.8453 -0.2711 8.1259 0.0466 6.9809 -0.1362 1.1194 -0.5332 -0.4724 0.0057 1.0551 0.6014 -1.1130 0.2627 0.2915 -0.1079 0.0220 0.7216 -0.0791 0.5503 refined -31.4015 32.7316 -10.5229 X-RAY DIFFRACTION 3.7796 -3.8225 4.8861 7.0845 -3.4841 6.9730 -0.2526 -1.3428 0.1801 0.6756 0.0611 0.4520 0.0863 -1.1994 0.2220 0.3890 0.0208 0.0637 0.6032 -0.0687 0.3188 refined -29.8568 33.2329 -0.4311 X-RAY DIFFRACTION 5.0387 -0.3963 -5.4776 1.2614 0.0224 6.0837 -0.6698 1.1530 -1.1425 -0.2585 0.0013 -0.0421 0.8181 -0.5396 0.5783 0.3251 0.0112 -0.0187 0.5347 -0.1092 0.2157 refined -20.4001 31.4395 -10.8243 X-RAY DIFFRACTION 7.4947 -4.6580 -5.2781 5.3668 5.8967 6.8911 -0.0325 -0.2493 0.0901 -0.3676 -0.1569 0.5199 -0.3795 1.0719 0.4119 0.2962 -0.1336 -0.0221 0.5281 -0.1450 0.2892 refined -22.4993 37.5597 -26.7189 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'A' and (resid 857 through 895 ) X-RAY DIFFRACTION 2 chain 'A' and (resid 896 through 938 ) X-RAY DIFFRACTION 3 chain 'A' and (resid 939 through 1012 ) X-RAY DIFFRACTION 4 chain 'A' and (resid 1013 through 1060 ) X-RAY DIFFRACTION 5 chain 'A' and (resid 1061 through 1071 ) X-RAY DIFFRACTION 6 chain 'B' and (resid 1 through 16 ) X-RAY DIFFRACTION 7 chain 'B' and (resid 17 through 34 ) X-RAY DIFFRACTION 8 chain 'B' and (resid 35 through 44 ) X-RAY DIFFRACTION 9 chain 'B' and (resid 45 through 54 ) X-RAY DIFFRACTION 10 chain 'B' and (resid 55 through 65 ) X-RAY DIFFRACTION 11 chain 'B' and (resid 66 through 71 ) X-RAY DIFFRACTION 12 chain 'B' and (resid 72 through 76 ) author_and_software_defined_assembly PISA 2 dimeric 1480 -3 16640 A CYS 871 A SG CYS 22 1_555 A ZN 1101 C ZN ZN 1_555 A CYS 874 A SG CYS 25 1_555 106.3 A CYS 871 A SG CYS 22 1_555 A ZN 1101 C ZN ZN 1_555 A CYS 890 A SG CYS 41 1_555 109.6 A CYS 874 A SG CYS 25 1_555 A ZN 1101 C ZN ZN 1_555 A CYS 890 A SG CYS 41 1_555 107.0 A CYS 871 A SG CYS 22 1_555 A ZN 1101 C ZN ZN 1_555 A CYS 893 A SG CYS 44 1_555 106.6 A CYS 874 A SG CYS 25 1_555 A ZN 1101 C ZN ZN 1_555 A CYS 893 A SG CYS 44 1_555 118.3 A CYS 890 A SG CYS 41 1_555 A ZN 1101 C ZN ZN 1_555 A CYS 893 A SG CYS 44 1_555 108.8 A CYS 898 A SG CYS 49 1_555 A ZN 1102 D ZN ZN 1_555 A CYS 901 A SG CYS 52 1_555 112.0 A CYS 898 A SG CYS 49 1_555 A ZN 1102 D ZN ZN 1_555 A HIS 926 A ND1 HIS 77 1_555 98.0 A CYS 901 A SG CYS 52 1_555 A ZN 1102 D ZN ZN 1_555 A HIS 926 A ND1 HIS 77 1_555 110.0 A CYS 898 A SG CYS 49 1_555 A ZN 1102 D ZN ZN 1_555 A CYS 930 A SG CYS 81 1_555 106.0 A CYS 901 A SG CYS 52 1_555 A ZN 1102 D ZN ZN 1_555 A CYS 930 A SG CYS 81 1_555 112.4 A HIS 926 A ND1 HIS 77 1_555 A ZN 1102 D ZN ZN 1_555 A CYS 930 A SG CYS 81 1_555 117.6 A CYS 911 A SG CYS 62 1_555 A ZN 1103 E ZN ZN 1_555 A CYS 916 A SG CYS 67 1_555 129.5 A CYS 911 A SG CYS 62 1_555 A ZN 1103 E ZN ZN 1_555 A HIS 923 A NE2 HIS 74 1_555 103.9 A CYS 916 A SG CYS 67 1_555 A ZN 1103 E ZN ZN 1_555 A HIS 923 A NE2 HIS 74 1_555 97.4 A CYS 911 A SG CYS 62 1_555 A ZN 1103 E ZN ZN 1_555 A HIS 925 A NE2 HIS 76 1_555 93.6 A CYS 916 A SG CYS 67 1_555 A ZN 1103 E ZN ZN 1_555 A HIS 925 A NE2 HIS 76 1_555 117.7 A HIS 923 A NE2 HIS 74 1_555 A ZN 1103 E ZN ZN 1_555 A HIS 925 A NE2 HIS 76 1_555 115.1 A CYS 969 A SG CYS 120 1_555 A ZN 1104 F ZN ZN 1_555 A CYS 986 A SG CYS 137 1_555 113.4 A CYS 969 A SG CYS 120 1_555 A ZN 1104 F ZN ZN 1_555 A CYS 998 A SG CYS 149 1_555 116.7 A CYS 986 A SG CYS 137 1_555 A ZN 1104 F ZN ZN 1_555 A CYS 998 A SG CYS 149 1_555 111.2 A CYS 969 A SG CYS 120 1_555 A ZN 1104 F ZN ZN 1_555 A HIS 1001 A ND1 HIS 152 1_555 104.7 A CYS 986 A SG CYS 137 1_555 A ZN 1104 F ZN ZN 1_555 A HIS 1001 A ND1 HIS 152 1_555 107.6 A CYS 998 A SG CYS 149 1_555 A ZN 1104 F ZN ZN 1_555 A HIS 1001 A ND1 HIS 152 1_555 102.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 869 A N ILE 20 A O TYR 878 A O TYR 29 A N PHE 888 A N PHE 39 A O PHE 897 A O PHE 48 A N GLU 973 A N GLU 124 A O GLU 984 A O GLU 135 B O LEU 15 B O LEU 15 B N ILE 3 B N ILE 3 B N PHE 4 B N PHE 4 B O LEU 67 B O LEU 67 B O HIS 68 B O HIS 68 B N ILE 44 B N ILE 44 B N PHE 45 B N PHE 45 B O LYS 48 B O LYS 48 1 A GLY 850 A GLY 1 1 Y 1 A PRO 851 A PRO 2 1 Y 1 A GLY 852 A GLY 3 1 Y 1 A PRO 853 A PRO 4 1 Y 1 A GLU 854 A GLU 5 1 Y 1 A TYR 855 A TYR 6 1 Y 1 A GLN 856 A GLN 7 1 Y 1 A LYS 1072 A LYS 223 1 Y 1 A PRO 958 -47.28 158.22 1 A ASN 979 70.92 41.60 1 A ALA 995 59.27 19.00 49.9131 0.2161 0.1757 0.1778 2.150 38.17 865 17070 5.06 97.26 1.000 1.000 0.26 1 0.91 MOLECULAR REPLACEMENT 25.55 0.90 1.11 pdb entry 4LJO ML FLAT BULK SOLVENT MODEL 2.150 38.17 120 2416 4 0 2292 0.008 2340 1.115 3163 16.864 900 0.071 340 0.006 421 0.2965 0.2666 2.2133 132 2697 98.00 0.3317 0.2666 2.2847 122 2682 97.00 0.2613 0.2410 2.3664 151 2570 98.00 0.2869 0.2318 2.4611 171 2664 99.00 0.3490 0.2173 2.5731 84 2800 98.00 0.3056 0.2271 2.7087 143 2639 98.00 0.3141 0.2137 2.8784 158 2576 95.00 0.2545 0.2110 3.1005 151 2539 97.00 0.2679 0.1874 3.4123 130 2623 97.00 0.1631 0.1550 3.9057 142 2654 96.00 0.1545 0.1264 4.9191 152 2575 96.00 0.1607 0.1250 38.1768 152 2670 98.00 32.703 2.15 38.17 4LJP 87792 17108 0 -3 0.094 1 9.3 5.1 99.5 refinement PHENIX refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 refinement CCP4 phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Mon Oct 15 17:54:16 2012 (svn ) http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.5.2 data reduction CCP4 data scaling CCP4 Structure of an active ligase (HOIP-H889A)/ubiquitin transfer complex 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N A ALA 857 A ALA 8 HELX_P A GLN 865 A GLN 16 1 1 9 A CYS 930 A CYS 81 HELX_P A ARG 935 A ARG 86 1 2 6 A THR 938 A THR 89 HELX_P A ASN 949 A ASN 100 1 3 12 A CYS 998 A CYS 149 HELX_P A HIS 1013 A HIS 164 1 4 16 A ASP 1016 A ASP 167 HELX_P A TYR 1021 A TYR 172 5 5 6 A GLU 1022 A GLU 173 HELX_P A HIS 1035 A HIS 186 1 6 14 A ASP 1045 A ASP 196 HELX_P A VAL 1061 A VAL 212 1 7 17 B THR 22 B THR 22 HELX_P B GLY 35 B GLY 35 1 8 14 B PRO 37 B PRO 37 HELX_P B ASP 39 B ASP 39 5 9 3 B LEU 56 B LEU 56 HELX_P B ASN 60 B ASN 60 5 10 5 metalc 2.491 A CYS 871 A SG CYS 22 1_555 A ZN 1101 C ZN ZN 1_555 metalc 2.500 A CYS 874 A SG CYS 25 1_555 A ZN 1101 C ZN ZN 1_555 metalc 2.284 A CYS 890 A SG CYS 41 1_555 A ZN 1101 C ZN ZN 1_555 metalc 2.299 A CYS 893 A SG CYS 44 1_555 A ZN 1101 C ZN ZN 1_555 metalc 2.431 A CYS 898 A SG CYS 49 1_555 A ZN 1102 D ZN ZN 1_555 metalc 2.254 A CYS 901 A SG CYS 52 1_555 A ZN 1102 D ZN ZN 1_555 metalc 2.323 A CYS 911 A SG CYS 62 1_555 A ZN 1103 E ZN ZN 1_555 metalc 2.223 A CYS 916 A SG CYS 67 1_555 A ZN 1103 E ZN ZN 1_555 metalc 2.142 A HIS 923 A NE2 HIS 74 1_555 A ZN 1103 E ZN ZN 1_555 metalc 2.121 A HIS 925 A NE2 HIS 76 1_555 A ZN 1103 E ZN ZN 1_555 metalc 2.085 A HIS 926 A ND1 HIS 77 1_555 A ZN 1102 D ZN ZN 1_555 metalc 2.415 A CYS 930 A SG CYS 81 1_555 A ZN 1102 D ZN ZN 1_555 metalc 2.382 A CYS 969 A SG CYS 120 1_555 A ZN 1104 F ZN ZN 1_555 metalc 2.249 A CYS 986 A SG CYS 137 1_555 A ZN 1104 F ZN ZN 1_555 metalc 2.406 A CYS 998 A SG CYS 149 1_555 A ZN 1104 F ZN ZN 1_555 metalc 2.135 A HIS 1001 A ND1 HIS 152 1_555 A ZN 1104 F ZN ZN 1_555 LIGASE E3 ligase-ubiquitin complex, LIGASE, HOIP, RNF31, ubiquitin, RBR ligase, E3 ligase, RING domain, IBR domain, Zinc Finger RNF31_HUMAN UNP 1 853 Q96EP0 PEYQAQGLAMYLQENGIDCPKCKFSYALARGGCMHFHCTQCRHQFCSGCYNAFYAKNKCPEPNCRVKKSLHGHHPRDCLF YLRDWTALRLQKLLQDNNVMFNTEPPAGARAVPGGGCRVIEQKEVPNGLRDEACGKETPAGYAGLCQAHYKEYLVSLINA HSLDPATLYEVEELETATERYLHVRPQPLAGEDPPAYQARLLQKLTEEVPLGQSIPRRRK E1B9K1_BOVIN UNP 2 77 E1B9K1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 853 1072 4LJP 853 1072 Q96EP0 A 1 4 223 77 152 4LJP 1 76 E1B9K1 B 2 1 76 1 expression tag GLY 850 4LJP A Q96EP0 UNP 1 1 expression tag PRO 851 4LJP A Q96EP0 UNP 2 1 expression tag GLY 852 4LJP A Q96EP0 UNP 3 1 HIS engineered mutation ALA 889 4LJP A Q96EP0 UNP 889 40 2 2 2 5 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A GLY 868 A GLY 19 A ASP 870 A ASP 21 A SER 877 A SER 28 A ALA 879 A ALA 30 A HIS 887 A HIS 38 A ALA 889 A ALA 40 A GLN 896 A GLN 47 A CYS 898 A CYS 49 A ILE 972 A ILE 123 A VAL 977 A VAL 128 A GLY 980 A GLY 131 A ALA 985 A ALA 136 B THR 12 B THR 12 B GLU 16 B GLU 16 B GLN 2 B GLN 2 B LYS 6 B LYS 6 B THR 66 B THR 66 B LEU 71 B LEU 71 B GLN 41 B GLN 41 B PHE 45 B PHE 45 B LYS 48 B LYS 48 B GLN 49 B GLN 49 BINDING SITE FOR RESIDUE ZN A 1101 A ZN 1101 Software 4 BINDING SITE FOR RESIDUE ZN A 1102 A ZN 1102 Software 4 BINDING SITE FOR RESIDUE ZN A 1103 A ZN 1103 Software 4 BINDING SITE FOR RESIDUE ZN A 1104 A ZN 1104 Software 4 A CYS 871 A CYS 22 4 1_555 A CYS 874 A CYS 25 4 1_555 A CYS 890 A CYS 41 4 1_555 A CYS 893 A CYS 44 4 1_555 A CYS 898 A CYS 49 4 1_555 A CYS 901 A CYS 52 4 1_555 A HIS 926 A HIS 77 4 1_555 A CYS 930 A CYS 81 4 1_555 A CYS 911 A CYS 62 4 1_555 A CYS 916 A CYS 67 4 1_555 A HIS 923 A HIS 74 4 1_555 A HIS 925 A HIS 76 4 1_555 A CYS 969 A CYS 120 4 1_555 A CYS 986 A CYS 137 4 1_555 A CYS 998 A CYS 149 4 1_555 A HIS 1001 A HIS 152 4 1_555 144 P 31