0.028634 0.004111 -0.002817 0.000000 0.023444 0.007305 0.000000 0.000000 0.023548 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) Partnership for Stem Cell Biology (STEMCELL) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 108.120 82.220 98.170 34.924 43.092 44.894 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N O N 235 N C N 236 N C N 237 N SE N 238 N C N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing To be published 0353 Crystal structure of an AT-rich interactive domain-containing protein 3A (ARID3A) from Homo sapiens at 2.21 A resolution 10.2210/pdb4ljx/pdb pdb_00004ljx 100 1 Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing) PIXEL 2013-02-22 DECTRIS PILATUS 6M single crystal Si(111) bent SINGLE WAVELENGTH M x-ray 1 0.9793 1.0 BL11-1 SSRL 0.9793 SYNCHROTRON SSRL BEAMLINE BL11-1 16258.925 AT-rich interactive domain-containing protein 3A ARID domain residues 216-351 2 man polymer 18.015 water 55 nat water ARID domain-containing protein 3A, B-cell regulator of IgH transcription, Bright, Dead ringer-like protein 1, E2F-binding protein 1 no yes GQPPDHGDWTYEEQFKQLYELDGDPKRKEFLDDLFSF(MSE)QKRGTPVNRIPI(MSE)AKQVLDLF(MSE)LYVLVTEK GGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQY(MSE)EYLYPYECEKRGLSNPNELQAAIDSNRREGRR GQPPDHGDWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLW REITKGLNLPTSITSAAFTLRTQYMEYLYPYECEKRGLSNPNELQAAIDSNRREGRR A,B JCSG-421838 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample ARID3A, BC060828, DRIL1, DRIL3, DRX, E2FBP1 9606 Homo sapiens 562 Escherichia Coli PB1 Plasmid SpeedET 1 1.95 36.77 VAPOR DIFFUSION, SITTING DROP 5.0 20.00% PEG-6000, 0.1M Citrate pH 5.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI:Biology Partnership for Stem Cell Biology STEMCELL PSI:Biology software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif chem_comp_atom chem_comp_bond repository Initial release Refinement description Data collection Database references Derived calculations Refinement description Data collection 1 0 2013-08-28 1 1 2017-11-15 1 2 2023-09-20 1 3 2023-12-06 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 Y RCSB Y RCSB 2013-07-05 REL REL HOH water THE CONSTRUCT (RESIDUES 216-351) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. 2KK0 PDB experimental model HOH 601 2 HOH HOH 601 A HOH 604 2 HOH HOH 602 A HOH 606 2 HOH HOH 603 A HOH 608 2 HOH HOH 604 A HOH 610 2 HOH HOH 605 A HOH 613 2 HOH HOH 606 A HOH 618 2 HOH HOH 607 A HOH 619 2 HOH HOH 608 A HOH 620 2 HOH HOH 609 A HOH 621 2 HOH HOH 610 A HOH 623 2 HOH HOH 611 A HOH 631 2 HOH HOH 612 A HOH 632 2 HOH HOH 613 A HOH 634 2 HOH HOH 614 A HOH 635 2 HOH HOH 615 A HOH 637 2 HOH HOH 616 A HOH 639 2 HOH HOH 617 A HOH 640 2 HOH HOH 618 A HOH 642 2 HOH HOH 619 A HOH 643 2 HOH HOH 620 A HOH 647 2 HOH HOH 621 A HOH 648 2 HOH HOH 622 A HOH 651 2 HOH HOH 623 A HOH 654 2 HOH HOH 624 A HOH 655 2 HOH HOH 625 A HOH 602 2 HOH HOH 401 B HOH 603 2 HOH HOH 402 B HOH 605 2 HOH HOH 403 B HOH 607 2 HOH HOH 404 B HOH 609 2 HOH HOH 405 B HOH 611 2 HOH HOH 406 B HOH 612 2 HOH HOH 407 B HOH 614 2 HOH HOH 408 B HOH 615 2 HOH HOH 409 B HOH 616 2 HOH HOH 410 B HOH 617 2 HOH HOH 411 B HOH 622 2 HOH HOH 412 B HOH 624 2 HOH HOH 413 B HOH 625 2 HOH HOH 414 B HOH 626 2 HOH HOH 415 B HOH 627 2 HOH HOH 416 B HOH 628 2 HOH HOH 417 B HOH 629 2 HOH HOH 418 B HOH 630 2 HOH HOH 419 B HOH 633 2 HOH HOH 420 B HOH 636 2 HOH HOH 421 B HOH 638 2 HOH HOH 422 B HOH 641 2 HOH HOH 423 B HOH 644 2 HOH HOH 424 B HOH 645 2 HOH HOH 425 B HOH 646 2 HOH HOH 426 B HOH 649 2 HOH HOH 427 B HOH 650 2 HOH HOH 428 B HOH 653 2 HOH HOH 429 B HOH 656 2 HOH HOH 430 B n 1 215 A n 2 216 A n 3 217 A n 4 218 A n 5 219 A n 6 220 A n 7 221 A n 8 222 A TRP 223 n 9 TRP 223 A THR 224 n 10 THR 224 A TYR 225 n 11 TYR 225 A GLU 226 n 12 GLU 226 A GLU 227 n 13 GLU 227 A GLN 228 n 14 GLN 228 A PHE 229 n 15 PHE 229 A LYS 230 n 16 LYS 230 A GLN 231 n 17 GLN 231 A LEU 232 n 18 LEU 232 A TYR 233 n 19 TYR 233 A GLU 234 n 20 GLU 234 A LEU 235 n 21 LEU 235 A ASP 236 n 22 ASP 236 A GLY 237 n 23 GLY 237 A ASP 238 n 24 ASP 238 A PRO 239 n 25 PRO 239 A LYS 240 n 26 LYS 240 A ARG 241 n 27 ARG 241 A LYS 242 n 28 LYS 242 A GLU 243 n 29 GLU 243 A PHE 244 n 30 PHE 244 A LEU 245 n 31 LEU 245 A ASP 246 n 32 ASP 246 A ASP 247 n 33 ASP 247 A LEU 248 n 34 LEU 248 A PHE 249 n 35 PHE 249 A SER 250 n 36 SER 250 A PHE 251 n 37 PHE 251 A MSE 252 n 38 MSE 252 A GLN 253 n 39 GLN 253 A LYS 254 n 40 LYS 254 A ARG 255 n 41 ARG 255 A GLY 256 n 42 GLY 256 A THR 257 n 43 THR 257 A PRO 258 n 44 PRO 258 A VAL 259 n 45 VAL 259 A ASN 260 n 46 ASN 260 A ARG 261 n 47 ARG 261 A ILE 262 n 48 ILE 262 A PRO 263 n 49 PRO 263 A ILE 264 n 50 ILE 264 A MSE 265 n 51 MSE 265 A ALA 266 n 52 ALA 266 A LYS 267 n 53 LYS 267 A GLN 268 n 54 GLN 268 A VAL 269 n 55 VAL 269 A LEU 270 n 56 LEU 270 A ASP 271 n 57 ASP 271 A LEU 272 n 58 LEU 272 A PHE 273 n 59 PHE 273 A MSE 274 n 60 MSE 274 A LEU 275 n 61 LEU 275 A TYR 276 n 62 TYR 276 A VAL 277 n 63 VAL 277 A LEU 278 n 64 LEU 278 A VAL 279 n 65 VAL 279 A THR 280 n 66 THR 280 A GLU 281 n 67 GLU 281 A LYS 282 n 68 LYS 282 A GLY 283 n 69 GLY 283 A GLY 284 n 70 GLY 284 A LEU 285 n 71 LEU 285 A VAL 286 n 72 VAL 286 A GLU 287 n 73 GLU 287 A VAL 288 n 74 VAL 288 A ILE 289 n 75 ILE 289 A ASN 290 n 76 ASN 290 A LYS 291 n 77 LYS 291 A LYS 292 n 78 LYS 292 A LEU 293 n 79 LEU 293 A TRP 294 n 80 TRP 294 A ARG 295 n 81 ARG 295 A GLU 296 n 82 GLU 296 A ILE 297 n 83 ILE 297 A THR 298 n 84 THR 298 A LYS 299 n 85 LYS 299 A GLY 300 n 86 GLY 300 A LEU 301 n 87 LEU 301 A ASN 302 n 88 ASN 302 A LEU 303 n 89 LEU 303 A PRO 304 n 90 PRO 304 A THR 305 n 91 THR 305 A SER 306 n 92 SER 306 A ILE 307 n 93 ILE 307 A THR 308 n 94 THR 308 A SER 309 n 95 SER 309 A ALA 310 n 96 ALA 310 A ALA 311 n 97 ALA 311 A PHE 312 n 98 PHE 312 A THR 313 n 99 THR 313 A LEU 314 n 100 LEU 314 A ARG 315 n 101 ARG 315 A THR 316 n 102 THR 316 A GLN 317 n 103 GLN 317 A TYR 318 n 104 TYR 318 A MSE 319 n 105 MSE 319 A GLU 320 n 106 GLU 320 A TYR 321 n 107 TYR 321 A LEU 322 n 108 LEU 322 A TYR 323 n 109 TYR 323 A PRO 324 n 110 PRO 324 A TYR 325 n 111 TYR 325 A GLU 326 n 112 GLU 326 A CYS 327 n 113 CYS 327 A GLU 328 n 114 GLU 328 A LYS 329 n 115 LYS 329 A ARG 330 n 116 ARG 330 A GLY 331 n 117 GLY 331 A LEU 332 n 118 LEU 332 A SER 333 n 119 SER 333 A ASN 334 n 120 ASN 334 A PRO 335 n 121 PRO 335 A ASN 336 n 122 ASN 336 A GLU 337 n 123 GLU 337 A LEU 338 n 124 LEU 338 A GLN 339 n 125 GLN 339 A ALA 340 n 126 ALA 340 A ALA 341 n 127 ALA 341 A ILE 342 n 128 ILE 342 A ASP 343 n 129 ASP 343 A SER 344 n 130 SER 344 A n 131 345 A n 132 346 A n 133 347 A n 134 348 A n 135 349 A n 136 350 A n 137 351 A n 1 215 B n 2 216 B n 3 217 B n 4 218 B n 5 219 B n 6 220 B n 7 221 B n 8 222 B TRP 223 n 9 TRP 223 B THR 224 n 10 THR 224 B TYR 225 n 11 TYR 225 B GLU 226 n 12 GLU 226 B GLU 227 n 13 GLU 227 B GLN 228 n 14 GLN 228 B PHE 229 n 15 PHE 229 B LYS 230 n 16 LYS 230 B GLN 231 n 17 GLN 231 B LEU 232 n 18 LEU 232 B TYR 233 n 19 TYR 233 B GLU 234 n 20 GLU 234 B LEU 235 n 21 LEU 235 B ASP 236 n 22 ASP 236 B GLY 237 n 23 GLY 237 B ASP 238 n 24 ASP 238 B PRO 239 n 25 PRO 239 B LYS 240 n 26 LYS 240 B ARG 241 n 27 ARG 241 B LYS 242 n 28 LYS 242 B GLU 243 n 29 GLU 243 B PHE 244 n 30 PHE 244 B LEU 245 n 31 LEU 245 B ASP 246 n 32 ASP 246 B ASP 247 n 33 ASP 247 B LEU 248 n 34 LEU 248 B PHE 249 n 35 PHE 249 B SER 250 n 36 SER 250 B PHE 251 n 37 PHE 251 B MSE 252 n 38 MSE 252 B GLN 253 n 39 GLN 253 B LYS 254 n 40 LYS 254 B ARG 255 n 41 ARG 255 B GLY 256 n 42 GLY 256 B THR 257 n 43 THR 257 B PRO 258 n 44 PRO 258 B VAL 259 n 45 VAL 259 B ASN 260 n 46 ASN 260 B ARG 261 n 47 ARG 261 B ILE 262 n 48 ILE 262 B PRO 263 n 49 PRO 263 B ILE 264 n 50 ILE 264 B MSE 265 n 51 MSE 265 B ALA 266 n 52 ALA 266 B LYS 267 n 53 LYS 267 B GLN 268 n 54 GLN 268 B VAL 269 n 55 VAL 269 B LEU 270 n 56 LEU 270 B ASP 271 n 57 ASP 271 B LEU 272 n 58 LEU 272 B PHE 273 n 59 PHE 273 B MSE 274 n 60 MSE 274 B LEU 275 n 61 LEU 275 B TYR 276 n 62 TYR 276 B VAL 277 n 63 VAL 277 B LEU 278 n 64 LEU 278 B VAL 279 n 65 VAL 279 B THR 280 n 66 THR 280 B GLU 281 n 67 GLU 281 B LYS 282 n 68 LYS 282 B GLY 283 n 69 GLY 283 B GLY 284 n 70 GLY 284 B LEU 285 n 71 LEU 285 B VAL 286 n 72 VAL 286 B GLU 287 n 73 GLU 287 B VAL 288 n 74 VAL 288 B ILE 289 n 75 ILE 289 B ASN 290 n 76 ASN 290 B LYS 291 n 77 LYS 291 B LYS 292 n 78 LYS 292 B LEU 293 n 79 LEU 293 B TRP 294 n 80 TRP 294 B ARG 295 n 81 ARG 295 B GLU 296 n 82 GLU 296 B ILE 297 n 83 ILE 297 B THR 298 n 84 THR 298 B LYS 299 n 85 LYS 299 B GLY 300 n 86 GLY 300 B LEU 301 n 87 LEU 301 B ASN 302 n 88 ASN 302 B LEU 303 n 89 LEU 303 B PRO 304 n 90 PRO 304 B THR 305 n 91 THR 305 B SER 306 n 92 SER 306 B ILE 307 n 93 ILE 307 B THR 308 n 94 THR 308 B SER 309 n 95 SER 309 B ALA 310 n 96 ALA 310 B ALA 311 n 97 ALA 311 B PHE 312 n 98 PHE 312 B THR 313 n 99 THR 313 B LEU 314 n 100 LEU 314 B ARG 315 n 101 ARG 315 B THR 316 n 102 THR 316 B GLN 317 n 103 GLN 317 B TYR 318 n 104 TYR 318 B MSE 319 n 105 MSE 319 B GLU 320 n 106 GLU 320 B TYR 321 n 107 TYR 321 B LEU 322 n 108 LEU 322 B TYR 323 n 109 TYR 323 B PRO 324 n 110 PRO 324 B TYR 325 n 111 TYR 325 B GLU 326 n 112 GLU 326 B CYS 327 n 113 CYS 327 B GLU 328 n 114 GLU 328 B LYS 329 n 115 LYS 329 B ARG 330 n 116 ARG 330 B GLY 331 n 117 GLY 331 B LEU 332 n 118 LEU 332 B SER 333 n 119 SER 333 B ASN 334 n 120 ASN 334 B PRO 335 n 121 PRO 335 B ASN 336 n 122 ASN 336 B GLU 337 n 123 GLU 337 B LEU 338 n 124 LEU 338 B GLN 339 n 125 GLN 339 B ALA 340 n 126 ALA 340 B ALA 341 n 127 ALA 341 B ILE 342 n 128 ILE 342 B ASP 343 n 129 ASP 343 B SER 344 n 130 SER 344 B n 131 345 B n 132 346 B n 133 347 B n 134 348 B n 135 349 B n 136 350 B n 137 351 B 2.3185 0.3584 -0.0099 1.3606 0.5620 2.2926 -0.0388 -0.0250 0.0216 -0.0483 0.0095 0.0285 -0.0499 0.0209 0.0292 -0.0881 0.0106 -0.0106 -0.0427 -0.0413 -0.0470 refined 52.0800 33.2296 -33.9906 X-RAY DIFFRACTION 2.1856 0.0433 0.3181 1.2246 0.4193 2.3864 -0.0024 0.0534 -0.0262 0.0588 0.0399 0.0171 0.0652 -0.0001 -0.0375 -0.1016 0.0040 -0.0046 -0.0440 -0.0646 -0.0288 refined 63.5038 51.0995 -48.0626 X-RAY DIFFRACTION A 223 A 344 X-RAY DIFFRACTION 1 {A|223 - 344} B 223 B 344 X-RAY DIFFRACTION 2 {B|223 - 344} author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric A MSE 252 SELENOMETHIONINE A MSE 38 MET A MSE 265 SELENOMETHIONINE A MSE 51 MET A MSE 274 SELENOMETHIONINE A MSE 60 MET A MSE 319 SELENOMETHIONINE A MSE 105 MET B MSE 252 SELENOMETHIONINE B MSE 38 MET B MSE 265 SELENOMETHIONINE B MSE 51 MET B MSE 274 SELENOMETHIONINE B MSE 60 MET B MSE 319 SELENOMETHIONINE B MSE 105 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N MSE 265 A N MSE 51 A O GLN 268 A O GLN 54 B N MSE 265 B N MSE 51 B O GLN 268 B O GLN 54 1 A CG TRP 223 A CG TRP 9 1 Y 1 A CD1 TRP 223 A CD1 TRP 9 1 Y 1 A CD2 TRP 223 A CD2 TRP 9 1 Y 1 A NE1 TRP 223 A NE1 TRP 9 1 Y 1 A CE2 TRP 223 A CE2 TRP 9 1 Y 1 A CE3 TRP 223 A CE3 TRP 9 1 Y 1 A CZ2 TRP 223 A CZ2 TRP 9 1 Y 1 A CZ3 TRP 223 A CZ3 TRP 9 1 Y 1 A CH2 TRP 223 A CH2 TRP 9 1 Y 1 A CG ARG 261 A CG ARG 47 1 Y 1 A CD ARG 261 A CD ARG 47 1 Y 1 A NE ARG 261 A NE ARG 47 1 Y 1 A CZ ARG 261 A CZ ARG 47 1 Y 1 A NH1 ARG 261 A NH1 ARG 47 1 Y 1 A NH2 ARG 261 A NH2 ARG 47 1 Y 1 B CG TRP 223 B CG TRP 9 1 Y 1 B CD1 TRP 223 B CD1 TRP 9 1 Y 1 B CD2 TRP 223 B CD2 TRP 9 1 Y 1 B NE1 TRP 223 B NE1 TRP 9 1 Y 1 B CE2 TRP 223 B CE2 TRP 9 1 Y 1 B CE3 TRP 223 B CE3 TRP 9 1 Y 1 B CZ2 TRP 223 B CZ2 TRP 9 1 Y 1 B CZ3 TRP 223 B CZ3 TRP 9 1 Y 1 B CH2 TRP 223 B CH2 TRP 9 1 Y 1 B CG ARG 261 B CG ARG 47 1 Y 1 B CD ARG 261 B CD ARG 47 1 Y 1 B NE ARG 261 B NE ARG 47 1 Y 1 B CZ ARG 261 B CZ ARG 47 1 Y 1 B NH1 ARG 261 B NH1 ARG 47 1 Y 1 B NH2 ARG 261 B NH2 ARG 47 1 Y 1 B CG GLU 281 B CG GLU 67 1 Y 1 B CD GLU 281 B CD GLU 67 1 Y 1 B OE1 GLU 281 B OE1 GLU 67 1 Y 1 B OE2 GLU 281 B OE2 GLU 67 1 Y 1 B OG SER 344 B OG SER 130 1 Y 1 A GLY 215 A GLY 1 1 Y 1 A GLN 216 A GLN 2 1 Y 1 A PRO 217 A PRO 3 1 Y 1 A PRO 218 A PRO 4 1 Y 1 A ASP 219 A ASP 5 1 Y 1 A HIS 220 A HIS 6 1 Y 1 A GLY 221 A GLY 7 1 Y 1 A ASP 222 A ASP 8 1 Y 1 A ASN 345 A ASN 131 1 Y 1 A ARG 346 A ARG 132 1 Y 1 A ARG 347 A ARG 133 1 Y 1 A GLU 348 A GLU 134 1 Y 1 A GLY 349 A GLY 135 1 Y 1 A ARG 350 A ARG 136 1 Y 1 A ARG 351 A ARG 137 1 Y 1 B GLY 215 B GLY 1 1 Y 1 B GLN 216 B GLN 2 1 Y 1 B PRO 217 B PRO 3 1 Y 1 B PRO 218 B PRO 4 1 Y 1 B ASP 219 B ASP 5 1 Y 1 B HIS 220 B HIS 6 1 Y 1 B GLY 221 B GLY 7 1 Y 1 B ASP 222 B ASP 8 1 Y 1 B ASN 345 B ASN 131 1 Y 1 B ARG 346 B ARG 132 1 Y 1 B ARG 347 B ARG 133 1 Y 1 B GLU 348 B GLU 134 1 Y 1 B GLY 349 B GLY 135 1 Y 1 B ARG 350 B ARG 136 1 Y 1 B ARG 351 B ARG 137 1 Y 1 A ILE 307 -66.15 99.08 1 A THR 308 -29.42 -53.33 1 A SER 309 -108.01 40.45 109.970 32.9359 12.380 3.2135 -3.3636 1.7811 -3.0510 1.9209 -0.1625 0.9373 0.9349 1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3.NCS RESTRAINTS WERE IMPOSED BY AUTOBUSTER'S LSSR PROCEDURE (-AUTONCS). 0.2017 0.1822 0.1832 2.2100 42.467 534 11357 4.7000 92.4900 1.000 0.750 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 2kk0 0.306 2.2100 42.467 55 2036 0 0 1981 954 SINUSOIDAL 2.000 55 HARMONIC 2.000 280 HARMONIC 5.000 2021 HARMONIC 20.000 259 SEMIHARMONIC 5.000 2433 SEMIHARMONIC 4.000 0.010 2021 HARMONIC 2.000 0.930 2730 HARMONIC 2.000 2.510 2.910 0.2122 0.1962 0.1969 2.4200 113 2641 2754 6 4.1000 92.4900 29.192 2.21 42.467 4LJX 11361 -3.000 0.128 1 7.310 92.000 0.568 2.210 2.290 2.5 4139 1157 1 94.300 0.441 2.290 2.380 3.1 4044 1127 1 92.600 0.349 2.380 2.490 3.8 4133 1141 1 91.700 0.332 2.490 2.620 3.9 3992 1102 1 92.100 0.272 2.620 2.780 4.8 3732 1054 1 88.900 0.186 2.780 3.000 6.4 4244 1177 1 92.100 0.128 3.000 3.300 8.7 4147 1141 1 94.500 0.095 3.300 3.770 11.3 4037 1125 1 92.600 0.076 3.770 4.740 13.8 3792 1094 1 89.000 0.066 4.740 42.467 14.7 4124 1153 1 92.600 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.3.0 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package July 4, 2012 refinement Gerard Bricogne buster-develop@GlobalPhasing.com http://www.globalphasing.com/buster/ BUSTER-TNT program 2.10.0 data reduction XDS refinement BUSTER 2.10.0 Crystal structure of an AT-rich interactive domain-containing protein 3A (ARID3A) from Homo sapiens at 2.21 A resolution 1 N N 1 N N 2 N N 2 N N A THR 224 A THR 10 HELX_P A PHE 229 A PHE 15 1 1 6 A PHE 229 A PHE 15 HELX_P A GLU 234 A GLU 20 1 2 6 A ASP 238 A ASP 24 HELX_P A GLY 256 A GLY 42 1 3 19 A ASP 271 A ASP 57 HELX_P A LYS 282 A LYS 68 1 4 12 A GLY 284 A GLY 70 HELX_P A LYS 292 A LYS 78 1 5 9 A LEU 293 A LEU 79 HELX_P A LEU 301 A LEU 87 1 6 9 A SER 309 A SER 95 HELX_P A LEU 322 A LEU 108 1 7 14 A LEU 322 A LEU 108 HELX_P A ARG 330 A ARG 116 1 8 9 A ASN 334 A ASN 120 HELX_P A SER 344 A SER 130 1 9 11 B THR 224 B THR 10 HELX_P B PHE 229 B PHE 15 1 10 6 B PHE 229 B PHE 15 HELX_P B GLU 234 B GLU 20 1 11 6 B ASP 238 B ASP 24 HELX_P B GLY 256 B GLY 42 1 12 19 B ASP 271 B ASP 57 HELX_P B LYS 282 B LYS 68 1 13 12 B GLY 284 B GLY 70 HELX_P B LYS 292 B LYS 78 1 14 9 B LEU 293 B LEU 79 HELX_P B LEU 301 B LEU 87 1 15 9 B SER 309 B SER 95 HELX_P B LEU 322 B LEU 108 1 16 14 B LEU 322 B LEU 108 HELX_P B ARG 330 B ARG 116 1 17 9 B ASN 334 B ASN 120 HELX_P B SER 344 B SER 130 1 18 11 covale 1.343 both A PHE 251 A C PHE 37 1_555 A MSE 252 A N MSE 38 1_555 covale 1.342 both A MSE 252 A C MSE 38 1_555 A GLN 253 A N GLN 39 1_555 covale 1.346 both A ILE 264 A C ILE 50 1_555 A MSE 265 A N MSE 51 1_555 covale 1.363 both A MSE 265 A C MSE 51 1_555 A ALA 266 A N ALA 52 1_555 covale 1.336 both A PHE 273 A C PHE 59 1_555 A MSE 274 A N MSE 60 1_555 covale 1.360 both A MSE 274 A C MSE 60 1_555 A LEU 275 A N LEU 61 1_555 covale 1.345 both A TYR 318 A C TYR 104 1_555 A MSE 319 A N MSE 105 1_555 covale 1.334 both A MSE 319 A C MSE 105 1_555 A GLU 320 A N GLU 106 1_555 covale 1.354 both B PHE 251 B C PHE 37 1_555 B MSE 252 B N MSE 38 1_555 covale 1.341 both B MSE 252 B C MSE 38 1_555 B GLN 253 B N GLN 39 1_555 covale 1.340 both B ILE 264 B C ILE 50 1_555 B MSE 265 B N MSE 51 1_555 covale 1.358 both B MSE 265 B C MSE 51 1_555 B ALA 266 B N ALA 52 1_555 covale 1.347 both B PHE 273 B C PHE 59 1_555 B MSE 274 B N MSE 60 1_555 covale 1.359 both B MSE 274 B C MSE 60 1_555 B LEU 275 B N LEU 61 1_555 covale 1.334 both B TYR 318 B C TYR 104 1_555 B MSE 319 B N MSE 105 1_555 covale 1.341 both B MSE 319 B C MSE 105 1_555 B GLU 320 B N GLU 106 1_555 TRANSCRIPTION ARID/BRIGHT DNA binding domain, PF01388 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, TRANSCRIPTION, Partnership for Stem Cell Biology, STEMCELL ARI3A_HUMAN UNP 1 216 Q99856 QPPDHGDWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWR EITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRR 216 351 4LJX 216 351 Q99856 A 1 2 137 216 351 4LJX 216 351 Q99856 B 1 2 137 1 expression tag GLY 215 4LJX A Q99856 UNP 1 1 LYS variant GLU 320 4LJX A Q99856 UNP 320 106 2 expression tag GLY 215 4LJX B Q99856 UNP 1 2 LYS variant GLU 320 4LJX B Q99856 UNP 320 106 2 2 anti-parallel anti-parallel A ILE 264 A ILE 50 A MSE 265 A MSE 51 A GLN 268 A GLN 54 A VAL 269 A VAL 55 B ILE 264 B ILE 50 B MSE 265 B MSE 51 B GLN 268 B GLN 54 B VAL 269 B VAL 55 1 P 1