0.010238
0.005911
0.000000
0.000000
0.011822
0.000000
0.000000
0.000000
0.012379
0.000000
0.000000
0.000000
Parker, L.J.
Tanaka, A.
Handa, N.
Honda, K.
Tomabechi, Y.
Shirouzu, M.
Yokoyama, S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
97.677
97.677
80.781
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O3 S
137.158
n
S-HYDROXYCYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C17 H18 N4 O
294.351
2-{4-[(3-aminopropyl)amino]quinazolin-2-yl}phenol
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
S
N
78
N
C
N
79
N
O
N
80
N
O
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
R
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
S
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
S
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
C
N
109
N
C
N
110
N
O
N
111
N
N
N
112
N
O
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
N
C
N
144
N
C
N
145
N
O
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
C
N
153
N
O
N
154
N
C
N
155
N
O
N
156
N
C
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
Y
171
N
C
Y
172
N
N
Y
173
N
C
Y
174
N
C
Y
175
N
N
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
S
C
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
N
217
N
C
N
218
N
C
N
219
N
C
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
N
N
235
S
C
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
C
N
240
N
C
N
241
N
C
N
242
N
N
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
S
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
N
325
N
O
Y
326
N
C
Y
327
N
N
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
N
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
N
N
337
N
C
N
338
N
C
N
339
N
C
N
340
N
N
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
R
C
N
378
N
O
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
N
Y
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
N
N
418
S
C
N
419
N
C
N
420
N
O
N
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
Y
426
N
C
Y
427
N
C
N
428
N
O
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
N
446
N
C
N
447
N
C
N
448
N
O
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
Y
167
N
sing
Y
168
N
doub
Y
169
N
doub
N
170
N
sing
Y
171
N
sing
N
172
N
sing
Y
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
Y
275
N
doub
Y
276
N
sing
Y
277
N
sing
N
278
N
sing
Y
279
N
doub
N
280
N
sing
Y
281
N
doub
N
282
N
sing
Y
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
Y
307
N
doub
Y
308
N
sing
Y
309
N
doub
N
310
N
sing
N
311
N
sing
Y
312
N
doub
Y
313
N
sing
Y
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
Y
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
doub
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
Y
386
N
doub
Y
387
N
sing
Y
388
N
sing
N
389
N
sing
Y
390
N
doub
Y
391
N
sing
Y
392
N
sing
N
393
N
sing
Y
394
N
sing
Y
395
N
doub
N
396
N
sing
Y
397
N
doub
N
398
N
sing
Y
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
Y
414
N
doub
Y
415
N
sing
Y
416
N
sing
N
417
N
sing
Y
418
N
doub
N
419
N
sing
Y
420
N
doub
N
421
N
sing
Y
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
US
Acta Crystallogr.,Sect.D
ABCRE6
1399-0047
70
392
404
10.1107/S1399004713028654
24531473
Kinase crystal identification and ATP-competitive inhibitor screening using the fluorescent ligand SKF86002.
2014
10.2210/pdb4lm5/pdb
pdb_00004lm5
100
1
IMAGE PLATE
2009-10-02
RIGAKU RAXIS IV++
SINGLE WAVELENGTH
M
x-ray
1
1.54
1.0
1.54
ROTATING ANODE
RIGAKU MICROMAX-007 HF
34203.727
Serine/threonine-protein kinase pim-1
2.7.11.1
UNP residues 120-404
1
man
polymer
294.351
2-{4-[(3-aminopropyl)amino]quinazolin-2-yl}phenol
1
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
18.015
water
111
nat
water
PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE PIM-1
no
yes
MKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL
DWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN(CSO)GVLHRDIKDENILIDLNRGELK
LIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSEC
QHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKSGPSSGENLYFQ
MKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL
DWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDF
GSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLI
RWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSKSGPSSGENLYFQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
PIM1
9606
Homo sapiens
562
Escherichia coli
Plasmid
pCR2.1-TOPO
1
3.25
62.18
0.410
VAPOR DIFFUSION, HANGING DROP
5.5
100MM CITRATE BUFFER PH 5.5, 200MM NACL, 1M NH4HPO4. Co-crystallised in the presence of 2mM SKF86002. Then these crystals were soaked with 2mM inhibitor dissolved in DMSO., VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
citation
citation_author
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Database references
Derived calculations
Data collection
Database references
Derived calculations
Refinement description
Data collection
1
0
2014-02-12
1
1
2019-12-18
1
2
2023-11-08
1
3
2023-12-06
_citation.country
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.pdbx_database_id_PubMed
_citation.title
_citation_author.name
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_chem_comp_atom.atom_id
_chem_comp_bond.atom_id_2
Crystal structure of Pim1 in complex with fluorescent compound SKF86002
RCSB
Y
PDBJ
2013-07-10
REL
REL
Q17
2-{4-[(3-aminopropyl)amino]quinazolin-2-yl}phenol
GOL
GLYCEROL
HOH
water
3UMW
PDB
experimental model
LIG
1
2
Q17
Q17
401
A
GOL
1
3
GOL
GOL
402
A
GOL
1
3
GOL
GOL
403
A
GOL
1
3
GOL
GOL
404
A
HOH
1
4
HOH
HOH
501
A
HOH
2
4
HOH
HOH
502
A
HOH
3
4
HOH
HOH
503
A
HOH
4
4
HOH
HOH
504
A
HOH
5
4
HOH
HOH
505
A
HOH
6
4
HOH
HOH
506
A
HOH
7
4
HOH
HOH
507
A
HOH
8
4
HOH
HOH
508
A
HOH
9
4
HOH
HOH
509
A
HOH
10
4
HOH
HOH
510
A
HOH
11
4
HOH
HOH
511
A
HOH
12
4
HOH
HOH
512
A
HOH
13
4
HOH
HOH
513
A
HOH
14
4
HOH
HOH
514
A
HOH
15
4
HOH
HOH
515
A
HOH
16
4
HOH
HOH
516
A
HOH
17
4
HOH
HOH
517
A
HOH
18
4
HOH
HOH
518
A
HOH
19
4
HOH
HOH
519
A
HOH
20
4
HOH
HOH
520
A
HOH
21
4
HOH
HOH
521
A
HOH
22
4
HOH
HOH
522
A
HOH
23
4
HOH
HOH
523
A
HOH
24
4
HOH
HOH
524
A
HOH
25
4
HOH
HOH
525
A
HOH
26
4
HOH
HOH
526
A
HOH
27
4
HOH
HOH
527
A
HOH
28
4
HOH
HOH
528
A
HOH
29
4
HOH
HOH
529
A
HOH
30
4
HOH
HOH
530
A
HOH
31
4
HOH
HOH
531
A
HOH
32
4
HOH
HOH
532
A
HOH
33
4
HOH
HOH
533
A
HOH
34
4
HOH
HOH
534
A
HOH
35
4
HOH
HOH
535
A
HOH
36
4
HOH
HOH
536
A
HOH
37
4
HOH
HOH
537
A
HOH
38
4
HOH
HOH
538
A
HOH
39
4
HOH
HOH
539
A
HOH
40
4
HOH
HOH
540
A
HOH
41
4
HOH
HOH
541
A
HOH
42
4
HOH
HOH
542
A
HOH
43
4
HOH
HOH
543
A
HOH
44
4
HOH
HOH
544
A
HOH
45
4
HOH
HOH
545
A
HOH
46
4
HOH
HOH
546
A
HOH
47
4
HOH
HOH
547
A
HOH
48
4
HOH
HOH
548
A
HOH
49
4
HOH
HOH
549
A
HOH
50
4
HOH
HOH
550
A
HOH
51
4
HOH
HOH
551
A
HOH
52
4
HOH
HOH
552
A
HOH
53
4
HOH
HOH
553
A
HOH
54
4
HOH
HOH
554
A
HOH
55
4
HOH
HOH
555
A
HOH
56
4
HOH
HOH
556
A
HOH
57
4
HOH
HOH
557
A
HOH
58
4
HOH
HOH
558
A
HOH
59
4
HOH
HOH
559
A
HOH
60
4
HOH
HOH
560
A
HOH
61
4
HOH
HOH
561
A
HOH
62
4
HOH
HOH
562
A
HOH
63
4
HOH
HOH
563
A
HOH
64
4
HOH
HOH
564
A
HOH
65
4
HOH
HOH
565
A
HOH
66
4
HOH
HOH
566
A
HOH
67
4
HOH
HOH
567
A
HOH
68
4
HOH
HOH
568
A
HOH
69
4
HOH
HOH
569
A
HOH
70
4
HOH
HOH
570
A
HOH
71
4
HOH
HOH
571
A
HOH
72
4
HOH
HOH
572
A
HOH
73
4
HOH
HOH
573
A
HOH
74
4
HOH
HOH
574
A
HOH
75
4
HOH
HOH
575
A
HOH
76
4
HOH
HOH
576
A
HOH
77
4
HOH
HOH
577
A
HOH
78
4
HOH
HOH
578
A
HOH
79
4
HOH
HOH
579
A
HOH
80
4
HOH
HOH
580
A
HOH
81
4
HOH
HOH
581
A
HOH
82
4
HOH
HOH
582
A
HOH
83
4
HOH
HOH
583
A
HOH
84
4
HOH
HOH
584
A
HOH
85
4
HOH
HOH
585
A
HOH
86
4
HOH
HOH
586
A
HOH
87
4
HOH
HOH
587
A
HOH
88
4
HOH
HOH
588
A
HOH
89
4
HOH
HOH
589
A
HOH
90
4
HOH
HOH
590
A
HOH
91
4
HOH
HOH
591
A
HOH
92
4
HOH
HOH
592
A
HOH
93
4
HOH
HOH
593
A
HOH
94
4
HOH
HOH
594
A
HOH
95
4
HOH
HOH
595
A
HOH
96
4
HOH
HOH
596
A
HOH
97
4
HOH
HOH
597
A
HOH
98
4
HOH
HOH
598
A
HOH
99
4
HOH
HOH
599
A
HOH
100
4
HOH
HOH
600
A
HOH
101
4
HOH
HOH
601
A
HOH
102
4
HOH
HOH
602
A
HOH
103
4
HOH
HOH
603
A
HOH
104
4
HOH
HOH
604
A
HOH
105
4
HOH
HOH
605
A
HOH
106
4
HOH
HOH
606
A
HOH
107
4
HOH
HOH
607
A
HOH
108
4
HOH
HOH
608
A
HOH
109
4
HOH
HOH
609
A
HOH
110
4
HOH
HOH
610
A
HOH
111
4
HOH
HOH
611
A
31.960
2.500
2.500
29.210
29.210
Phaser MODE: MR_AUTO
n
1
28
A
n
2
29
A
n
3
30
A
n
4
31
A
n
5
32
A
n
6
33
A
n
7
34
A
GLU
35
n
8
GLU
35
A
SER
36
n
9
SER
36
A
GLN
37
n
10
GLN
37
A
TYR
38
n
11
TYR
38
A
GLN
39
n
12
GLN
39
A
VAL
40
n
13
VAL
40
A
GLY
41
n
14
GLY
41
A
PRO
42
n
15
PRO
42
A
LEU
43
n
16
LEU
43
A
LEU
44
n
17
LEU
44
A
GLY
45
n
18
GLY
45
A
SER
46
n
19
SER
46
A
GLY
47
n
20
GLY
47
A
GLY
48
n
21
GLY
48
A
PHE
49
n
22
PHE
49
A
GLY
50
n
23
GLY
50
A
SER
51
n
24
SER
51
A
VAL
52
n
25
VAL
52
A
TYR
53
n
26
TYR
53
A
SER
54
n
27
SER
54
A
GLY
55
n
28
GLY
55
A
ILE
56
n
29
ILE
56
A
ARG
57
n
30
ARG
57
A
VAL
58
n
31
VAL
58
A
SER
59
n
32
SER
59
A
ASP
60
n
33
ASP
60
A
ASN
61
n
34
ASN
61
A
LEU
62
n
35
LEU
62
A
PRO
63
n
36
PRO
63
A
VAL
64
n
37
VAL
64
A
ALA
65
n
38
ALA
65
A
ILE
66
n
39
ILE
66
A
LYS
67
n
40
LYS
67
A
HIS
68
n
41
HIS
68
A
VAL
69
n
42
VAL
69
A
GLU
70
n
43
GLU
70
A
LYS
71
n
44
LYS
71
A
ASP
72
n
45
ASP
72
A
ARG
73
n
46
ARG
73
A
ILE
74
n
47
ILE
74
A
SER
75
n
48
SER
75
A
ASP
76
n
49
ASP
76
A
TRP
77
n
50
TRP
77
A
GLY
78
n
51
GLY
78
A
GLU
79
n
52
GLU
79
A
n
53
80
A
n
54
81
A
n
55
82
A
n
56
83
A
n
57
84
A
n
58
85
A
VAL
86
n
59
VAL
86
A
PRO
87
n
60
PRO
87
A
MET
88
n
61
MET
88
A
GLU
89
n
62
GLU
89
A
VAL
90
n
63
VAL
90
A
VAL
91
n
64
VAL
91
A
LEU
92
n
65
LEU
92
A
LEU
93
n
66
LEU
93
A
LYS
94
n
67
LYS
94
A
LYS
95
n
68
LYS
95
A
VAL
96
n
69
VAL
96
A
SER
97
n
70
SER
97
A
SER
98
n
71
SER
98
A
GLY
99
n
72
GLY
99
A
PHE
100
n
73
PHE
100
A
SER
101
n
74
SER
101
A
GLY
102
n
75
GLY
102
A
VAL
103
n
76
VAL
103
A
ILE
104
n
77
ILE
104
A
ARG
105
n
78
ARG
105
A
LEU
106
n
79
LEU
106
A
LEU
107
n
80
LEU
107
A
ASP
108
n
81
ASP
108
A
TRP
109
n
82
TRP
109
A
PHE
110
n
83
PHE
110
A
GLU
111
n
84
GLU
111
A
ARG
112
n
85
ARG
112
A
PRO
113
n
86
PRO
113
A
ASP
114
n
87
ASP
114
A
SER
115
n
88
SER
115
A
PHE
116
n
89
PHE
116
A
VAL
117
n
90
VAL
117
A
LEU
118
n
91
LEU
118
A
ILE
119
n
92
ILE
119
A
LEU
120
n
93
LEU
120
A
GLU
121
n
94
GLU
121
A
ARG
122
n
95
ARG
122
A
PRO
123
n
96
PRO
123
A
GLU
124
n
97
GLU
124
A
PRO
125
n
98
PRO
125
A
VAL
126
n
99
VAL
126
A
GLN
127
n
100
GLN
127
A
ASP
128
n
101
ASP
128
A
LEU
129
n
102
LEU
129
A
PHE
130
n
103
PHE
130
A
ASP
131
n
104
ASP
131
A
PHE
132
n
105
PHE
132
A
ILE
133
n
106
ILE
133
A
THR
134
n
107
THR
134
A
GLU
135
n
108
GLU
135
A
ARG
136
n
109
ARG
136
A
GLY
137
n
110
GLY
137
A
ALA
138
n
111
ALA
138
A
LEU
139
n
112
LEU
139
A
GLN
140
n
113
GLN
140
A
GLU
141
n
114
GLU
141
A
GLU
142
n
115
GLU
142
A
LEU
143
n
116
LEU
143
A
ALA
144
n
117
ALA
144
A
ARG
145
n
118
ARG
145
A
SER
146
n
119
SER
146
A
PHE
147
n
120
PHE
147
A
PHE
148
n
121
PHE
148
A
TRP
149
n
122
TRP
149
A
GLN
150
n
123
GLN
150
A
VAL
151
n
124
VAL
151
A
LEU
152
n
125
LEU
152
A
GLU
153
n
126
GLU
153
A
ALA
154
n
127
ALA
154
A
VAL
155
n
128
VAL
155
A
ARG
156
n
129
ARG
156
A
HIS
157
n
130
HIS
157
A
CYS
158
n
131
CYS
158
A
HIS
159
n
132
HIS
159
A
ASN
160
n
133
ASN
160
A
CSO
161
n
134
CSO
161
A
GLY
162
n
135
GLY
162
A
VAL
163
n
136
VAL
163
A
LEU
164
n
137
LEU
164
A
HIS
165
n
138
HIS
165
A
ARG
166
n
139
ARG
166
A
ASP
167
n
140
ASP
167
A
ILE
168
n
141
ILE
168
A
LYS
169
n
142
LYS
169
A
ASP
170
n
143
ASP
170
A
GLU
171
n
144
GLU
171
A
ASN
172
n
145
ASN
172
A
ILE
173
n
146
ILE
173
A
LEU
174
n
147
LEU
174
A
ILE
175
n
148
ILE
175
A
ASP
176
n
149
ASP
176
A
LEU
177
n
150
LEU
177
A
ASN
178
n
151
ASN
178
A
ARG
179
n
152
ARG
179
A
GLY
180
n
153
GLY
180
A
GLU
181
n
154
GLU
181
A
LEU
182
n
155
LEU
182
A
LYS
183
n
156
LYS
183
A
LEU
184
n
157
LEU
184
A
ILE
185
n
158
ILE
185
A
ASP
186
n
159
ASP
186
A
PHE
187
n
160
PHE
187
A
GLY
188
n
161
GLY
188
A
SER
189
n
162
SER
189
A
GLY
190
n
163
GLY
190
A
ALA
191
n
164
ALA
191
A
LEU
192
n
165
LEU
192
A
LEU
193
n
166
LEU
193
A
LYS
194
n
167
LYS
194
A
ASP
195
n
168
ASP
195
A
THR
196
n
169
THR
196
A
VAL
197
n
170
VAL
197
A
TYR
198
n
171
TYR
198
A
THR
199
n
172
THR
199
A
ASP
200
n
173
ASP
200
A
PHE
201
n
174
PHE
201
A
ASP
202
n
175
ASP
202
A
GLY
203
n
176
GLY
203
A
THR
204
n
177
THR
204
A
ARG
205
n
178
ARG
205
A
VAL
206
n
179
VAL
206
A
TYR
207
n
180
TYR
207
A
SER
208
n
181
SER
208
A
PRO
209
n
182
PRO
209
A
PRO
210
n
183
PRO
210
A
GLU
211
n
184
GLU
211
A
TRP
212
n
185
TRP
212
A
ILE
213
n
186
ILE
213
A
ARG
214
n
187
ARG
214
A
TYR
215
n
188
TYR
215
A
HIS
216
n
189
HIS
216
A
ARG
217
n
190
ARG
217
A
TYR
218
n
191
TYR
218
A
HIS
219
n
192
HIS
219
A
GLY
220
n
193
GLY
220
A
ARG
221
n
194
ARG
221
A
SER
222
n
195
SER
222
A
ALA
223
n
196
ALA
223
A
ALA
224
n
197
ALA
224
A
VAL
225
n
198
VAL
225
A
TRP
226
n
199
TRP
226
A
SER
227
n
200
SER
227
A
LEU
228
n
201
LEU
228
A
GLY
229
n
202
GLY
229
A
ILE
230
n
203
ILE
230
A
LEU
231
n
204
LEU
231
A
LEU
232
n
205
LEU
232
A
TYR
233
n
206
TYR
233
A
ASP
234
n
207
ASP
234
A
MET
235
n
208
MET
235
A
VAL
236
n
209
VAL
236
A
CYS
237
n
210
CYS
237
A
GLY
238
n
211
GLY
238
A
ASP
239
n
212
ASP
239
A
ILE
240
n
213
ILE
240
A
PRO
241
n
214
PRO
241
A
PHE
242
n
215
PHE
242
A
GLU
243
n
216
GLU
243
A
HIS
244
n
217
HIS
244
A
ASP
245
n
218
ASP
245
A
GLU
246
n
219
GLU
246
A
GLU
247
n
220
GLU
247
A
ILE
248
n
221
ILE
248
A
ILE
249
n
222
ILE
249
A
ARG
250
n
223
ARG
250
A
GLY
251
n
224
GLY
251
A
GLN
252
n
225
GLN
252
A
VAL
253
n
226
VAL
253
A
PHE
254
n
227
PHE
254
A
PHE
255
n
228
PHE
255
A
ARG
256
n
229
ARG
256
A
GLN
257
n
230
GLN
257
A
ARG
258
n
231
ARG
258
A
VAL
259
n
232
VAL
259
A
SER
260
n
233
SER
260
A
SER
261
n
234
SER
261
A
GLU
262
n
235
GLU
262
A
CYS
263
n
236
CYS
263
A
GLN
264
n
237
GLN
264
A
HIS
265
n
238
HIS
265
A
LEU
266
n
239
LEU
266
A
ILE
267
n
240
ILE
267
A
ARG
268
n
241
ARG
268
A
TRP
269
n
242
TRP
269
A
CYS
270
n
243
CYS
270
A
LEU
271
n
244
LEU
271
A
ALA
272
n
245
ALA
272
A
LEU
273
n
246
LEU
273
A
ARG
274
n
247
ARG
274
A
PRO
275
n
248
PRO
275
A
SER
276
n
249
SER
276
A
ASP
277
n
250
ASP
277
A
ARG
278
n
251
ARG
278
A
PRO
279
n
252
PRO
279
A
THR
280
n
253
THR
280
A
PHE
281
n
254
PHE
281
A
GLU
282
n
255
GLU
282
A
GLU
283
n
256
GLU
283
A
ILE
284
n
257
ILE
284
A
GLN
285
n
258
GLN
285
A
ASN
286
n
259
ASN
286
A
HIS
287
n
260
HIS
287
A
PRO
288
n
261
PRO
288
A
TRP
289
n
262
TRP
289
A
MET
290
n
263
MET
290
A
GLN
291
n
264
GLN
291
A
ASP
292
n
265
ASP
292
A
VAL
293
n
266
VAL
293
A
LEU
294
n
267
LEU
294
A
LEU
295
n
268
LEU
295
A
PRO
296
n
269
PRO
296
A
GLN
297
n
270
GLN
297
A
GLU
298
n
271
GLU
298
A
THR
299
n
272
THR
299
A
ALA
300
n
273
ALA
300
A
GLU
301
n
274
GLU
301
A
ILE
302
n
275
ILE
302
A
HIS
303
n
276
HIS
303
A
LEU
304
n
277
LEU
304
A
HIS
305
n
278
HIS
305
A
n
279
306
A
n
280
307
A
n
281
308
A
n
282
309
A
n
283
310
A
n
284
311
A
n
285
312
A
n
286
313
A
n
287
314
A
n
288
315
A
n
289
316
A
n
290
317
A
n
291
318
A
n
292
319
A
n
293
320
A
n
294
321
A
n
295
322
A
n
296
323
A
n
297
324
A
n
298
325
A
7.5798
-2.3934
-5.1875
3.8093
1.9049
3.8163
0.1711
0.3380
-0.6028
-0.4212
-0.1495
-0.2587
0.4537
-0.3910
0.0369
0.5517
0.0266
-0.0996
0.1814
-0.0226
0.3888
refined
41.0366
-7.8329
-3.1164
X-RAY DIFFRACTION
3.4765
1.0238
0.1343
5.5721
-2.8444
5.9480
-0.1531
0.1480
-0.2421
-0.4508
0.3304
0.3701
0.0333
-0.4576
-0.2230
0.4589
-0.0183
-0.0738
0.1908
-0.0555
0.2768
refined
36.1101
-1.5506
-8.5726
X-RAY DIFFRACTION
2.8999
3.1415
1.9855
5.6438
3.3733
3.7558
-0.0755
-0.0400
-0.4274
-0.2055
0.2046
-0.2820
0.1521
0.0552
-0.1312
0.3953
0.0645
-0.0147
0.2326
0.0598
0.2811
refined
43.1814
3.4301
-3.5811
X-RAY DIFFRACTION
3.9546
-0.5437
1.4467
1.3365
-0.1536
2.8768
0.1663
0.0076
-0.2517
-0.2098
-0.0309
0.0806
0.2865
-0.0280
-0.1255
0.3101
0.0108
-0.0063
0.1524
0.0293
0.1864
refined
39.9079
15.2534
-4.3195
X-RAY DIFFRACTION
6.8745
-0.5404
2.3432
2.0074
1.6805
3.5911
0.0636
-0.6560
-0.2306
0.0881
-0.0312
0.2314
0.1632
-0.5652
-0.0041
0.2446
-0.0252
0.0235
0.2532
0.0548
0.1918
refined
30.6792
21.9333
5.4568
X-RAY DIFFRACTION
6.4699
-0.1295
1.0087
2.6133
-0.0682
7.1210
-0.1403
-0.1429
0.4461
-0.1547
0.0662
-0.0245
-0.3563
-0.1440
0.0483
0.2728
0.0345
-0.0047
0.1216
-0.0087
0.2129
refined
40.4206
30.2141
3.9444
X-RAY DIFFRACTION
5.7810
-1.2711
-0.6021
7.5670
-3.3276
9.8333
-0.2830
0.0108
-0.1534
-0.2726
0.1804
-1.2471
0.6358
0.9654
0.1003
0.2916
0.0289
-0.0185
0.5012
-0.0607
0.3958
refined
58.4889
18.3249
0.2396
X-RAY DIFFRACTION
A
35
A
49
X-RAY DIFFRACTION
1
chain 'A' and (resseq 35:49 )
A
50
A
96
X-RAY DIFFRACTION
2
chain 'A' and (resseq 50:96 )
A
97
A
140
X-RAY DIFFRACTION
3
chain 'A' and (resseq 97:140 )
A
141
A
204
X-RAY DIFFRACTION
4
chain 'A' and (resseq 141:204 )
A
205
A
250
X-RAY DIFFRACTION
5
chain 'A' and (resseq 205:250 )
A
251
A
290
X-RAY DIFFRACTION
6
chain 'A' and (resseq 251:290 )
A
291
A
305
X-RAY DIFFRACTION
7
chain 'A' and (resseq 291:305 )
author_and_software_defined_assembly
PISA
1
monomeric
A
CSO
161
S-HYDROXYCYSTEINE
A
CSO
134
CYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
44
A
N
LEU
17
A
O
VAL
52
A
O
VAL
25
A
N
TYR
53
A
N
TYR
26
A
O
ILE
66
A
O
ILE
39
A
N
ALA
65
A
N
ALA
38
A
O
LEU
120
A
O
LEU
93
A
O
ILE
119
A
O
ILE
92
A
N
ASP
108
A
N
ASP
81
A
N
GLN
127
A
N
GLN
100
A
O
ILE
175
A
O
ILE
148
A
N
LEU
174
A
N
LEU
147
A
O
LYS
183
A
O
LYS
156
A
N
LEU
164
A
N
LEU
137
A
O
ALA
191
A
O
ALA
164
1
A
CG
GLU
79
A
CG
GLU
52
1
Y
1
A
CD
GLU
79
A
CD
GLU
52
1
Y
1
A
OE1
GLU
79
A
OE1
GLU
52
1
Y
1
A
OE2
GLU
79
A
OE2
GLU
52
1
Y
1
A
CG
HIS
305
A
CG
HIS
278
1
Y
1
A
ND1
HIS
305
A
ND1
HIS
278
1
Y
1
A
CD2
HIS
305
A
CD2
HIS
278
1
Y
1
A
CE1
HIS
305
A
CE1
HIS
278
1
Y
1
A
NE2
HIS
305
A
NE2
HIS
278
1
Y
1
A
MET
28
A
MET
1
1
Y
1
A
LYS
29
A
LYS
2
1
Y
1
A
GLU
30
A
GLU
3
1
Y
1
A
LYS
31
A
LYS
4
1
Y
1
A
GLU
32
A
GLU
5
1
Y
1
A
PRO
33
A
PRO
6
1
Y
1
A
LEU
34
A
LEU
7
1
Y
1
A
LEU
80
A
LEU
53
1
Y
1
A
PRO
81
A
PRO
54
1
Y
1
A
ASN
82
A
ASN
55
1
Y
1
A
GLY
83
A
GLY
56
1
Y
1
A
THR
84
A
THR
57
1
Y
1
A
ARG
85
A
ARG
58
1
Y
1
A
SER
306
A
SER
279
1
Y
1
A
LEU
307
A
LEU
280
1
Y
1
A
SER
308
A
SER
281
1
Y
1
A
PRO
309
A
PRO
282
1
Y
1
A
GLY
310
A
GLY
283
1
Y
1
A
PRO
311
A
PRO
284
1
Y
1
A
SER
312
A
SER
285
1
Y
1
A
LYS
313
A
LYS
286
1
Y
1
A
SER
314
A
SER
287
1
Y
1
A
GLY
315
A
GLY
288
1
Y
1
A
PRO
316
A
PRO
289
1
Y
1
A
SER
317
A
SER
290
1
Y
1
A
SER
318
A
SER
291
1
Y
1
A
GLY
319
A
GLY
292
1
Y
1
A
GLU
320
A
GLU
293
1
Y
1
A
ASN
321
A
ASN
294
1
Y
1
A
LEU
322
A
LEU
295
1
Y
1
A
TYR
323
A
TYR
296
1
Y
1
A
PHE
324
A
PHE
297
1
Y
1
A
GLN
325
A
GLN
298
1
Y
1
A
ASP
167
-145.95
43.14
1
A
ASP
186
65.43
81.43
1
A
ASP
202
-145.68
24.87
98.830
39.9394
16.610
0.1979
0.1557
0.1578
2.2500
29.7280
1053
21925
20872
5.0500
99.9900
1.000
0.500
0.8834
0.2000
1
1.360
MOLECULAR REPLACEMENT
18.7100
0.9000
1.1100
3UMW
ML
FLAT BULK SOLVENT MODEL
2.2500
29.7280
111
2307
40
0
2156
0.013
2251
1.266
3047
0.098
321
0.006
392
17.147
825
0.2212
0.1667
2.3523
143
2445
2588
8
100.0000
0.2160
0.1634
2.4762
131
2460
2591
8
100.0000
0.2087
0.1668
2.6313
126
2480
2606
8
100.0000
0.2222
0.1796
2.8343
120
2461
2581
8
100.0000
0.2190
0.1760
3.1193
143
2476
2619
8
100.0000
0.2263
0.1642
3.5700
132
2465
2597
8
100.0000
0.1854
0.1312
4.4953
130
2502
2632
8
100.0000
0.1601
0.1496
29.7310
128
2530
2658
8
100.0000
2.250
84.590
4LM5
20902
0.066
1
39.800
22.500
100.000
0.421
0.412
2.250
2.370
1.800
66923
3024
0.090
0.421
0.412
1
9.300
22.100
100.000
0.320
0.312
2.370
2.520
2.400
64293
2888
0.068
0.320
0.312
1
12.400
22.300
100.000
0.226
0.221
2.520
2.690
3.400
60416
2699
0.048
0.226
0.221
1
17.100
22.400
100.000
0.151
0.148
2.690
2.900
5.100
56615
2514
0.032
0.151
0.148
1
24.500
22.500
100.000
0.095
0.093
2.900
3.180
8.000
52435
2320
0.020
0.095
0.093
1
36.300
22.600
100.000
0.057
0.055
3.180
3.560
12.700
47629
2099
0.012
0.057
0.055
1
56.200
22.700
100.000
0.040
0.039
3.560
4.110
16.900
42604
1871
0.008
0.040
0.039
1
77.800
22.800
100.000
0.033
0.032
4.110
5.030
18.800
35872
1571
0.007
0.033
0.032
1
90.800
22.800
100.000
0.034
0.033
5.030
7.120
18.400
27888
1229
0.007
0.034
0.033
1
84.300
22.700
100.000
0.034
0.033
7.120
29.728
16.100
14701
687
0.007
0.034
0.033
1
96.900
21.400
98.800
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2011/05/18
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.20
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Mon Jan 7 03:55:00 2008
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.1.2
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.2_1309
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
CrystalClear
data reduction
MOSFLM
Crystal structure of Pim1 in complex with 2-{4-[(3-aminopropyl)amino]quinazolin-2-yl}phenol (resulting from displacement of SKF86002)
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
A
ASP
72
A
ASP
45
HELX_P
A
ILE
74
A
ILE
47
5
1
3
A
PRO
87
A
PRO
60
HELX_P
A
SER
97
A
SER
70
1
2
11
A
LEU
129
A
LEU
102
HELX_P
A
GLY
137
A
GLY
110
1
3
9
A
GLN
140
A
GLN
113
HELX_P
A
CSO
161
A
CSO
134
1
4
22
A
LYS
169
A
LYS
142
HELX_P
A
GLU
171
A
GLU
144
5
5
3
A
THR
204
A
THR
177
HELX_P
A
SER
208
A
SER
181
5
6
5
A
PRO
209
A
PRO
182
HELX_P
A
HIS
216
A
HIS
189
1
7
8
A
HIS
219
A
HIS
192
HELX_P
A
GLY
238
A
GLY
211
1
8
20
A
HIS
244
A
HIS
217
HELX_P
A
GLY
251
A
GLY
224
1
9
8
A
SER
260
A
SER
233
HELX_P
A
LEU
271
A
LEU
244
1
10
12
A
ARG
274
A
ARG
247
HELX_P
A
ARG
278
A
ARG
251
5
11
5
A
THR
280
A
THR
253
HELX_P
A
ASN
286
A
ASN
259
1
12
7
A
HIS
287
A
HIS
260
HELX_P
A
GLN
291
A
GLN
264
5
13
5
A
LEU
295
A
LEU
268
HELX_P
A
LEU
304
A
LEU
277
1
14
10
covale
1.325
both
A
ASN
160
A
C
ASN
133
1_555
A
CSO
161
A
N
CSO
134
1_555
covale
1.332
both
A
CSO
161
A
C
CSO
134
1_555
A
GLY
162
A
N
GLY
135
1_555
TRANSFERASE/TRANSFERASE INHIBITOR
co-crystallization, SKF86002, fluorescence, inhibitor screening, kinase, TRANSFERASE-TRANSFERASE INHIBITOR complex
A
GLU
124
A
GLU
97
1
A
PRO
125
A
PRO
98
-0.47
PIM1_HUMAN
UNP
1
120
P11309
KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD
WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFG
SGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIR
WCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
120
404
4LM5
29
313
P11309
A
1
2
286
1
expression tag
MET
28
4LM5
A
P11309
UNP
1
1
expression tag
SER
314
4LM5
A
P11309
UNP
287
1
expression tag
GLY
315
4LM5
A
P11309
UNP
288
1
expression tag
PRO
316
4LM5
A
P11309
UNP
289
1
expression tag
SER
317
4LM5
A
P11309
UNP
290
1
expression tag
SER
318
4LM5
A
P11309
UNP
291
1
expression tag
GLY
319
4LM5
A
P11309
UNP
292
1
expression tag
GLU
320
4LM5
A
P11309
UNP
293
1
expression tag
ASN
321
4LM5
A
P11309
UNP
294
1
expression tag
LEU
322
4LM5
A
P11309
UNP
295
1
expression tag
TYR
323
4LM5
A
P11309
UNP
296
1
expression tag
PHE
324
4LM5
A
P11309
UNP
297
1
expression tag
GLN
325
4LM5
A
P11309
UNP
298
5
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
11
A
GLY
47
A
GLY
20
A
GLY
50
A
GLY
23
A
ARG
57
A
ARG
30
A
PRO
63
A
PRO
36
A
GLU
70
A
GLU
43
A
SER
115
A
SER
88
A
GLU
121
A
GLU
94
A
LEU
106
A
LEU
79
A
GLU
111
A
GLU
84
A
VAL
126
A
VAL
99
A
ASP
128
A
ASP
101
A
ILE
173
A
ILE
146
A
ASP
176
A
ASP
149
A
GLU
181
A
GLU
154
A
LEU
184
A
LEU
157
A
VAL
163
A
VAL
136
A
LEU
164
A
LEU
137
A
ALA
191
A
ALA
164
A
LEU
192
A
LEU
165
BINDING SITE FOR RESIDUE Q17 A 401
A
Q17
401
Software
13
BINDING SITE FOR RESIDUE GOL A 402
A
GOL
402
Software
7
BINDING SITE FOR RESIDUE GOL A 403
A
GOL
403
Software
5
BINDING SITE FOR RESIDUE GOL A 404
A
GOL
404
Software
4
A
PHE
49
A
PHE
22
13
1_555
A
VAL
52
A
VAL
25
13
1_555
A
ALA
65
A
ALA
38
13
1_555
A
LYS
67
A
LYS
40
13
1_555
A
LEU
120
A
LEU
93
13
1_555
A
GLU
121
A
GLU
94
13
1_555
A
ASP
128
A
ASP
101
13
1_555
A
GLU
171
A
GLU
144
13
1_555
A
LEU
174
A
LEU
147
13
1_555
A
ILE
185
A
ILE
158
13
1_555
A
ASP
186
A
ASP
159
13
1_555
A
GOL
404
E
GOL
13
1_555
A
HOH
592
F
HOH
13
1_555
A
PHE
130
A
PHE
103
7
1_555
A
ILE
133
A
ILE
106
7
1_555
A
ASP
170
A
ASP
143
7
1_555
A
ASP
234
A
ASP
207
7
1_555
A
GLY
238
A
GLY
211
7
1_555
A
ASP
239
A
ASP
212
7
1_555
A
HOH
599
F
HOH
7
1_555
A
ARG
156
A
ARG
129
5
1_555
A
ARG
258
A
ARG
231
5
2_654
A
SER
261
A
SER
234
5
2_654
A
HOH
512
F
HOH
5
2_654
A
HOH
547
F
HOH
5
2_654
A
GLN
127
A
GLN
100
4
1_555
A
ASP
128
A
ASP
101
4
1_555
A
ASP
131
A
ASP
104
4
1_555
A
Q17
401
B
Q17
4
1_555
170
P 65