data_4LTI # _entry.id 4LTI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4LTI pdb_00004lti 10.2210/pdb4lti/pdb NDB NA2618 ? ? RCSB RCSB081066 ? ? WWPDB D_1000081066 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3QRN 'High resolution hydrated structure' unspecified PDB 4LTG . unspecified PDB 4LTH . unspecified PDB 4LTF . unspecified PDB 4LTJ . unspecified PDB 4LTK . unspecified PDB 4LTL . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4LTI _pdbx_database_status.recvd_initial_deposition_date 2013-07-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hall, J.P.' 1 'Sanchez-Weatherby, J.' 2 'Cardin, C.J.' 3 # _citation.id primary _citation.title 'Controlled Dehydration of a Ruthenium Complex-DNA Crystal Induces Reversible DNA Kinking.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 136 _citation.page_first 17505 _citation.page_last 17512 _citation.year 2014 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 25393319 _citation.pdbx_database_id_DOI 10.1021/ja508745x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hall, J.P.' 1 ? primary 'Sanchez-Weatherby, J.' 2 ? primary 'Alberti, C.' 3 ? primary 'Quimper, C.H.' 4 ? primary ;O'Sullivan, K. ; 5 ? primary 'Brazier, J.A.' 6 ? primary 'Winter, G.' 7 ? primary 'Sorensen, T.' 8 ? primary 'Kelly, J.M.' 9 ? primary 'Cardin, D.J.' 10 ? primary 'Cardin, C.J.' 11 ? # _cell.entry_id 4LTI _cell.length_a 44.190 _cell.length_b 44.190 _cell.length_c 27.470 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LTI _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn DNA 3045.992 1 ? ? ? ? 2 non-polymer syn 'Ru(tap)2(dppz) complex' 747.732 1 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 37 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DC)(DG)(DG)(DC)(DG)(DC)(DC)(DG)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TCGGCGCCGA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA synthesised by ATDBio' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4LTI _struct_ref.pdbx_db_accession 4LTI _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code TCGGCGCCGA _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LTI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4LTI _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 RKL non-polymer . 'Ru(tap)2(dppz) complex' ? 'C38 H22 N12 Ru 2' 747.732 # _exptl.entry_id 4LTI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_percent_sol 44.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details ;1ul 1mM d(TCGGCGCCGA)2, 1ul 4mM lambda-[Ru(TAP)2(dppz)]2+, 6ul 12mM spermine, 10% MPD, 40mM sodium cacodylate, 80mM KCl, 20mM BaCl2. Equilibriated against 1ml 35% MPD. Crystal was dehydrated to 74% relative humidity on the beamline using the HC1b., pH 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-12-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'dual si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8266 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8266 # _reflns.entry_id 4LTI _reflns.observed_criterion_sigma_I 2.6 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 31.25 _reflns.d_resolution_high 1.41 _reflns.number_obs 5252 _reflns.number_all 5252 _reflns.percent_possible_obs 94.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.41 _reflns_shell.d_res_low 1.45 _reflns_shell.percent_possible_all 94.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4LTI _refine.ls_number_reflns_obs 4994 _refine.ls_number_reflns_all 4994 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 31.25 _refine.ls_d_res_high 1.41 _refine.ls_percent_reflns_obs 93.65 _refine.ls_R_factor_obs 0.13255 _refine.ls_R_factor_all 0.13255 _refine.ls_R_factor_R_work 0.13112 _refine.ls_R_factor_R_free 0.16216 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 243 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.980 _refine.correlation_coeff_Fo_to_Fc_free 0.973 _refine.B_iso_mean 20.294 _refine.aniso_B[1][1] 0.06 _refine.aniso_B[2][2] 0.06 _refine.aniso_B[3][3] -0.11 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3S80' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.053 _refine.pdbx_overall_ESU_R_Free 0.057 _refine.overall_SU_ML 0.036 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.953 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 292 _refine_hist.d_res_high 1.41 _refine_hist.d_res_low 31.25 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.021 0.013 ? 290 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.002 0.020 ? 134 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.857 1.598 ? 456 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.660 3.000 ? 308 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.079 0.200 ? 30 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.037 0.020 ? 176 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.004 0.020 ? 78 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it 2.023 1.911 ? 290 ? 'X-RAY DIFFRACTION' r_scbond_other 2.019 1.912 ? 291 ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other 3.067 2.855 ? 457 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 4.636 20.587 ? 635 ? 'X-RAY DIFFRACTION' r_long_range_B_other 4.520 20.454 ? 627 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.410 _refine_ls_shell.d_res_low 1.447 _refine_ls_shell.number_reflns_R_work 351 _refine_ls_shell.R_factor_R_work 0.210 _refine_ls_shell.percent_reflns_obs 93.95 _refine_ls_shell.R_factor_R_free 0.274 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4LTI _struct.title 'Dehydration/Rehydration of a Nucleic Acid system containing a Polypyridyl Ruthenium Complex at 74% relative humidity (4/7)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LTI _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Dehydration, HC1b, kinking, ruthenium, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 C BA . BA ? ? A DG 4 A BA 102 1_555 ? ? ? ? ? ? ? 2.865 ? ? metalc2 metalc ? ? C BA . BA ? ? ? 1_555 E HOH . O ? ? A BA 102 A HOH 203 1_555 ? ? ? ? ? ? ? 2.833 ? ? metalc3 metalc ? ? C BA . BA ? ? ? 1_555 E HOH . O ? ? A BA 102 A HOH 204 1_555 ? ? ? ? ? ? ? 2.842 ? ? metalc4 metalc ? ? C BA . BA ? ? ? 1_555 E HOH . O ? ? A BA 102 A HOH 208 1_555 ? ? ? ? ? ? ? 2.906 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 3 A DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 3 A DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 3 A DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 4 A DC 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 4 A DC 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 4 A DC 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 5 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 5 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 5 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 6 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 6 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 6 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 7 A DG 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 7 A DG 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 7 A DG 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A RKL 101 ? 14 'BINDING SITE FOR RESIDUE RKL A 101' AC2 Software A BA 102 ? 9 'BINDING SITE FOR RESIDUE BA A 102' AC3 Software A CL 103 ? 6 'BINDING SITE FOR RESIDUE CL A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 DT A 1 ? DT A 1 . ? 3_464 ? 2 AC1 14 DT A 1 ? DT A 1 . ? 6_466 ? 3 AC1 14 DC A 2 ? DC A 2 . ? 3_464 ? 4 AC1 14 DG A 3 ? DG A 3 . ? 1_555 ? 5 AC1 14 DG A 3 ? DG A 3 . ? 3_464 ? 6 AC1 14 DG A 4 ? DG A 4 . ? 1_555 ? 7 AC1 14 DC A 5 ? DC A 5 . ? 1_555 ? 8 AC1 14 DC A 7 ? DC A 7 . ? 8_555 ? 9 AC1 14 DC A 8 ? DC A 8 . ? 8_555 ? 10 AC1 14 DG A 9 ? DG A 9 . ? 6_465 ? 11 AC1 14 DA A 10 ? DA A 10 . ? 7_365 ? 12 AC1 14 DA A 10 ? DA A 10 . ? 6_465 ? 13 AC1 14 HOH E . ? HOH A 217 . ? 1_555 ? 14 AC1 14 HOH E . ? HOH A 226 . ? 1_555 ? 15 AC2 9 DG A 3 ? DG A 3 . ? 1_555 ? 16 AC2 9 DG A 4 ? DG A 4 . ? 1_555 ? 17 AC2 9 CL D . ? CL A 103 . ? 1_555 ? 18 AC2 9 CL D . ? CL A 103 . ? 8_555 ? 19 AC2 9 HOH E . ? HOH A 203 . ? 1_555 ? 20 AC2 9 HOH E . ? HOH A 204 . ? 1_555 ? 21 AC2 9 HOH E . ? HOH A 205 . ? 8_555 ? 22 AC2 9 HOH E . ? HOH A 208 . ? 1_555 ? 23 AC2 9 HOH E . ? HOH A 211 . ? 8_555 ? 24 AC3 6 DG A 4 ? DG A 4 . ? 1_555 ? 25 AC3 6 DG A 4 ? DG A 4 . ? 8_555 ? 26 AC3 6 DC A 5 ? DC A 5 . ? 1_555 ? 27 AC3 6 DC A 5 ? DC A 5 . ? 8_555 ? 28 AC3 6 BA C . ? BA A 102 . ? 1_555 ? 29 AC3 6 BA C . ? BA A 102 . ? 8_555 ? # _database_PDB_matrix.entry_id 4LTI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4LTI _atom_sites.fract_transf_matrix[1][1] 0.022630 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022630 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.036403 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C CL N O P RU # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DT A 1 1 ? -30.906 28.078 19.228 0.70 49.61 ? 1 DT A "O5'" 1 ATOM 2 C "C5'" . DT A 1 1 ? -31.568 29.332 19.069 0.70 47.74 ? 1 DT A "C5'" 1 ATOM 3 C "C4'" . DT A 1 1 ? -31.029 30.040 17.850 0.70 44.72 ? 1 DT A "C4'" 1 ATOM 4 O "O4'" . DT A 1 1 ? -30.510 31.318 18.290 0.70 48.77 ? 1 DT A "O4'" 1 ATOM 5 C "C3'" . DT A 1 1 ? -29.884 29.328 17.117 0.70 44.39 ? 1 DT A "C3'" 1 ATOM 6 O "O3'" . DT A 1 1 ? -30.365 28.505 16.037 0.70 39.40 ? 1 DT A "O3'" 1 ATOM 7 C "C2'" . DT A 1 1 ? -29.050 30.482 16.592 0.70 48.59 ? 1 DT A "C2'" 1 ATOM 8 C "C1'" . DT A 1 1 ? -29.329 31.642 17.565 0.70 47.28 ? 1 DT A "C1'" 1 ATOM 9 N N1 . DT A 1 1 ? -28.249 31.968 18.548 0.70 42.00 ? 1 DT A N1 1 ATOM 10 C C2 . DT A 1 1 ? -27.947 33.298 18.706 0.70 32.88 ? 1 DT A C2 1 ATOM 11 O O2 . DT A 1 1 ? -28.520 34.187 18.100 0.70 31.42 ? 1 DT A O2 1 ATOM 12 N N3 . DT A 1 1 ? -26.907 33.549 19.566 0.70 24.12 ? 1 DT A N3 1 ATOM 13 C C4 . DT A 1 1 ? -26.211 32.633 20.315 0.70 27.06 ? 1 DT A C4 1 ATOM 14 O O4 . DT A 1 1 ? -25.357 33.010 21.084 0.70 27.64 ? 1 DT A O4 1 ATOM 15 C C5 . DT A 1 1 ? -26.584 31.265 20.126 0.70 34.22 ? 1 DT A C5 1 ATOM 16 C C7 . DT A 1 1 ? -25.858 30.212 20.900 0.70 34.82 ? 1 DT A C7 1 ATOM 17 C C6 . DT A 1 1 ? -27.555 30.992 19.237 0.70 38.87 ? 1 DT A C6 1 ATOM 18 P P . DC A 1 2 ? -29.517 27.191 15.483 0.70 39.17 ? 2 DC A P 1 ATOM 19 O OP1 . DC A 1 2 ? -29.650 26.046 16.404 0.70 37.50 ? 2 DC A OP1 1 ATOM 20 O OP2 . DC A 1 2 ? -28.205 27.660 14.947 0.70 36.34 ? 2 DC A OP2 1 ATOM 21 O "O5'" . DC A 1 2 ? -30.407 26.641 14.259 1.00 34.30 ? 2 DC A "O5'" 1 ATOM 22 C "C5'" . DC A 1 2 ? -30.735 27.545 13.191 1.00 25.04 ? 2 DC A "C5'" 1 ATOM 23 C "C4'" . DC A 1 2 ? -31.998 27.151 12.462 1.00 17.54 ? 2 DC A "C4'" 1 ATOM 24 O "O4'" . DC A 1 2 ? -33.120 27.108 13.365 1.00 17.19 ? 2 DC A "O4'" 1 ATOM 25 C "C3'" . DC A 1 2 ? -32.340 28.150 11.378 1.00 16.08 ? 2 DC A "C3'" 1 ATOM 26 O "O3'" . DC A 1 2 ? -31.880 27.621 10.128 1.00 16.15 ? 2 DC A "O3'" 1 ATOM 27 C "C2'" . DC A 1 2 ? -33.846 28.256 11.428 1.00 17.36 ? 2 DC A "C2'" 1 ATOM 28 C "C1'" . DC A 1 2 ? -34.248 27.729 12.814 1.00 16.93 ? 2 DC A "C1'" 1 ATOM 29 N N1 . DC A 1 2 ? -34.700 28.725 13.788 1.00 15.34 ? 2 DC A N1 1 ATOM 30 C C2 . DC A 1 2 ? -35.906 28.553 14.425 1.00 15.39 ? 2 DC A C2 1 ATOM 31 O O2 . DC A 1 2 ? -36.569 27.541 14.175 1.00 16.15 ? 2 DC A O2 1 ATOM 32 N N3 . DC A 1 2 ? -36.331 29.482 15.314 1.00 15.22 ? 2 DC A N3 1 ATOM 33 C C4 . DC A 1 2 ? -35.576 30.534 15.586 1.00 14.87 ? 2 DC A C4 1 ATOM 34 N N4 . DC A 1 2 ? -35.993 31.359 16.529 1.00 16.76 ? 2 DC A N4 1 ATOM 35 C C5 . DC A 1 2 ? -34.323 30.733 14.961 1.00 17.92 ? 2 DC A C5 1 ATOM 36 C C6 . DC A 1 2 ? -33.942 29.829 14.045 1.00 18.41 ? 2 DC A C6 1 ATOM 37 P P . DG A 1 3 ? -31.859 28.489 8.819 1.00 18.38 ? 3 DG A P 1 ATOM 38 O OP1 . DG A 1 3 ? -30.893 27.787 7.891 1.00 21.43 ? 3 DG A OP1 1 ATOM 39 O OP2 . DG A 1 3 ? -31.694 29.926 9.169 1.00 19.53 ? 3 DG A OP2 1 ATOM 40 O "O5'" . DG A 1 3 ? -33.312 28.272 8.242 1.00 17.82 ? 3 DG A "O5'" 1 ATOM 41 C "C5'" . DG A 1 3 ? -33.730 26.996 7.723 1.00 15.94 ? 3 DG A "C5'" 1 ATOM 42 C "C4'" . DG A 1 3 ? -35.211 26.974 7.533 1.00 15.82 ? 3 DG A "C4'" 1 ATOM 43 O "O4'" . DG A 1 3 ? -35.819 27.087 8.857 1.00 16.16 ? 3 DG A "O4'" 1 ATOM 44 C "C3'" . DG A 1 3 ? -35.764 28.143 6.736 1.00 15.63 ? 3 DG A "C3'" 1 ATOM 45 O "O3'" . DG A 1 3 ? -35.824 27.815 5.334 1.00 16.12 ? 3 DG A "O3'" 1 ATOM 46 C "C2'" . DG A 1 3 ? -37.163 28.272 7.299 1.00 16.35 ? 3 DG A "C2'" 1 ATOM 47 C "C1'" . DG A 1 3 ? -37.023 27.832 8.751 1.00 13.82 ? 3 DG A "C1'" 1 ATOM 48 N N9 . DG A 1 3 ? -36.877 28.987 9.629 1.00 13.91 ? 3 DG A N9 1 ATOM 49 C C8 . DG A 1 3 ? -35.958 30.007 9.505 1.00 16.07 ? 3 DG A C8 1 ATOM 50 N N7 . DG A 1 3 ? -36.017 30.873 10.479 1.00 13.66 ? 3 DG A N7 1 ATOM 51 C C5 . DG A 1 3 ? -37.028 30.390 11.305 1.00 13.02 ? 3 DG A C5 1 ATOM 52 C C6 . DG A 1 3 ? -37.603 30.948 12.462 1.00 14.13 ? 3 DG A C6 1 ATOM 53 O O6 . DG A 1 3 ? -37.234 31.933 13.106 1.00 14.69 ? 3 DG A O6 1 ATOM 54 N N1 . DG A 1 3 ? -38.642 30.171 12.935 1.00 13.91 ? 3 DG A N1 1 ATOM 55 C C2 . DG A 1 3 ? -39.132 29.059 12.328 1.00 13.65 ? 3 DG A C2 1 ATOM 56 N N2 . DG A 1 3 ? -40.165 28.475 12.926 1.00 15.79 ? 3 DG A N2 1 ATOM 57 N N3 . DG A 1 3 ? -38.600 28.509 11.255 1.00 14.24 ? 3 DG A N3 1 ATOM 58 C C4 . DG A 1 3 ? -37.575 29.236 10.785 1.00 13.61 ? 3 DG A C4 1 ATOM 59 P P . DG A 1 4 ? -35.660 28.932 4.230 1.00 15.97 ? 4 DG A P 1 ATOM 60 O OP1 . DG A 1 4 ? -35.310 28.199 2.935 1.00 18.58 ? 4 DG A OP1 1 ATOM 61 O OP2 . DG A 1 4 ? -34.714 29.990 4.706 1.00 18.39 ? 4 DG A OP2 1 ATOM 62 O "O5'" . DG A 1 4 ? -37.069 29.568 4.112 1.00 15.94 ? 4 DG A "O5'" 1 ATOM 63 C "C5'" . DG A 1 4 ? -38.231 28.852 3.754 1.00 15.21 ? 4 DG A "C5'" 1 ATOM 64 C "C4'" . DG A 1 4 ? -39.380 29.818 3.613 1.00 16.55 ? 4 DG A "C4'" 1 ATOM 65 O "O4'" . DG A 1 4 ? -39.663 30.427 4.899 1.00 15.45 ? 4 DG A "O4'" 1 ATOM 66 C "C3'" . DG A 1 4 ? -39.145 30.979 2.660 1.00 15.38 ? 4 DG A "C3'" 1 ATOM 67 O "O3'" . DG A 1 4 ? -40.381 31.336 2.035 1.00 19.17 ? 4 DG A "O3'" 1 ATOM 68 C "C2'" . DG A 1 4 ? -38.672 32.086 3.565 1.00 14.56 ? 4 DG A "C2'" 1 ATOM 69 C "C1'" . DG A 1 4 ? -39.435 31.821 4.832 1.00 15.13 ? 4 DG A "C1'" 1 ATOM 70 N N9 . DG A 1 4 ? -38.711 32.216 6.054 1.00 14.63 ? 4 DG A N9 1 ATOM 71 C C8 . DG A 1 4 ? -37.412 31.917 6.379 1.00 14.73 ? 4 DG A C8 1 ATOM 72 N N7 . DG A 1 4 ? -37.075 32.323 7.571 1.00 13.86 ? 4 DG A N7 1 ATOM 73 C C5 . DG A 1 4 ? -38.233 32.899 8.079 1.00 13.90 ? 4 DG A C5 1 ATOM 74 C C6 . DG A 1 4 ? -38.454 33.592 9.290 1.00 14.80 ? 4 DG A C6 1 ATOM 75 O O6 . DG A 1 4 ? -37.652 33.796 10.214 1.00 14.91 ? 4 DG A O6 1 ATOM 76 N N1 . DG A 1 4 ? -39.743 34.109 9.356 1.00 13.59 ? 4 DG A N1 1 ATOM 77 C C2 . DG A 1 4 ? -40.726 33.931 8.409 1.00 13.71 ? 4 DG A C2 1 ATOM 78 N N2 . DG A 1 4 ? -41.924 34.469 8.672 1.00 14.75 ? 4 DG A N2 1 ATOM 79 N N3 . DG A 1 4 ? -40.532 33.290 7.272 1.00 13.96 ? 4 DG A N3 1 ATOM 80 C C4 . DG A 1 4 ? -39.250 32.861 7.147 1.00 13.98 ? 4 DG A C4 1 ATOM 81 P P . DC A 1 5 ? -40.511 32.394 0.847 1.00 19.84 ? 5 DC A P 1 ATOM 82 O OP1 . DC A 1 5 ? -41.336 31.711 -0.217 1.00 24.68 ? 5 DC A OP1 1 ATOM 83 O OP2 . DC A 1 5 ? -39.208 32.980 0.500 1.00 20.51 ? 5 DC A OP2 1 ATOM 84 O "O5'" . DC A 1 5 ? -41.333 33.546 1.533 1.00 19.37 ? 5 DC A "O5'" 1 ATOM 85 C "C5'" . DC A 1 5 ? -42.748 33.520 1.531 1.00 20.03 ? 5 DC A "C5'" 1 ATOM 86 C "C4'" . DC A 1 5 ? -43.325 34.765 2.131 1.00 17.99 ? 5 DC A "C4'" 1 ATOM 87 O "O4'" . DC A 1 5 ? -43.009 34.824 3.528 1.00 17.63 ? 5 DC A "O4'" 1 ATOM 88 C "C3'" . DC A 1 5 ? -42.741 36.019 1.526 1.00 19.21 ? 5 DC A "C3'" 1 ATOM 89 O "O3'" . DC A 1 5 ? -43.669 36.323 0.489 1.00 22.74 ? 5 DC A "O3'" 1 ATOM 90 C "C2'" . DC A 1 5 ? -42.801 37.022 2.655 1.00 17.73 ? 5 DC A "C2'" 1 ATOM 91 C "C1'" . DC A 1 5 ? -42.772 36.164 3.914 1.00 17.06 ? 5 DC A "C1'" 1 ATOM 92 N N1 . DC A 1 5 ? -41.506 36.158 4.620 1.00 15.51 ? 5 DC A N1 1 ATOM 93 C C2 . DC A 1 5 ? -41.453 36.630 5.929 1.00 18.65 ? 5 DC A C2 1 ATOM 94 O O2 . DC A 1 5 ? -42.477 37.093 6.445 1.00 17.95 ? 5 DC A O2 1 ATOM 95 N N3 . DC A 1 5 ? -40.304 36.551 6.605 1.00 14.98 ? 5 DC A N3 1 ATOM 96 C C4 . DC A 1 5 ? -39.223 36.012 6.029 1.00 14.03 ? 5 DC A C4 1 ATOM 97 N N4 . DC A 1 5 ? -38.112 35.921 6.761 1.00 14.34 ? 5 DC A N4 1 ATOM 98 C C5 . DC A 1 5 ? -39.249 35.517 4.704 1.00 14.57 ? 5 DC A C5 1 ATOM 99 C C6 . DC A 1 5 ? -40.406 35.591 4.046 1.00 15.51 ? 5 DC A C6 1 ATOM 100 P P . DG A 1 6 ? -43.159 36.795 -0.989 1.00 25.59 ? 6 DG A P 1 ATOM 101 O OP1 . DG A 1 6 ? -44.375 36.853 -1.873 1.00 27.60 ? 6 DG A OP1 1 ATOM 102 O OP2 . DG A 1 6 ? -41.954 36.109 -1.346 1.00 25.59 ? 6 DG A OP2 1 ATOM 103 O "O5'" . DG A 1 6 ? -42.642 38.277 -0.741 1.00 24.88 ? 6 DG A "O5'" 1 ATOM 104 C "C5'" . DG A 1 6 ? -43.508 39.359 -0.392 1.00 22.44 ? 6 DG A "C5'" 1 ATOM 105 C "C4'" . DG A 1 6 ? -42.729 40.644 -0.380 1.00 20.89 ? 6 DG A "C4'" 1 ATOM 106 O "O4'" . DG A 1 6 ? -41.805 40.638 0.736 1.00 20.73 ? 6 DG A "O4'" 1 ATOM 107 C "C3'" . DG A 1 6 ? -41.873 40.892 -1.627 1.00 21.51 ? 6 DG A "C3'" 1 ATOM 108 O "O3'" . DG A 1 6 ? -41.918 42.328 -1.804 1.00 24.71 ? 6 DG A "O3'" 1 ATOM 109 C "C2'" . DG A 1 6 ? -40.508 40.356 -1.212 1.00 20.09 ? 6 DG A "C2'" 1 ATOM 110 C "C1'" . DG A 1 6 ? -40.457 40.683 0.269 1.00 18.61 ? 6 DG A "C1'" 1 ATOM 111 N N9 . DG A 1 6 ? -39.675 39.735 1.062 1.00 17.56 ? 6 DG A N9 1 ATOM 112 C C8 . DG A 1 6 ? -39.437 38.403 0.832 1.00 18.38 ? 6 DG A C8 1 ATOM 113 N N7 . DG A 1 6 ? -38.689 37.849 1.751 1.00 17.78 ? 6 DG A N7 1 ATOM 114 C C5 . DG A 1 6 ? -38.448 38.874 2.660 1.00 14.63 ? 6 DG A C5 1 ATOM 115 C C6 . DG A 1 6 ? -37.725 38.874 3.871 1.00 17.28 ? 6 DG A C6 1 ATOM 116 O O6 . DG A 1 6 ? -37.063 37.946 4.385 1.00 16.74 ? 6 DG A O6 1 ATOM 117 N N1 . DG A 1 6 ? -37.785 40.114 4.497 1.00 15.97 ? 6 DG A N1 1 ATOM 118 C C2 . DG A 1 6 ? -38.395 41.222 3.980 1.00 17.35 ? 6 DG A C2 1 ATOM 119 N N2 . DG A 1 6 ? -38.293 42.345 4.690 1.00 17.73 ? 6 DG A N2 1 ATOM 120 N N3 . DG A 1 6 ? -39.040 41.240 2.841 1.00 16.76 ? 6 DG A N3 1 ATOM 121 C C4 . DG A 1 6 ? -39.066 40.034 2.259 1.00 16.29 ? 6 DG A C4 1 ATOM 122 P P . DC A 1 7 ? -41.163 43.039 -3.058 1.00 26.26 ? 7 DC A P 1 ATOM 123 O OP1 . DC A 1 7 ? -41.922 44.306 -3.298 1.00 29.73 ? 7 DC A OP1 1 ATOM 124 O OP2 . DC A 1 7 ? -40.883 42.041 -4.081 1.00 24.45 ? 7 DC A OP2 1 ATOM 125 O "O5'" . DC A 1 7 ? -39.723 43.385 -2.439 1.00 20.57 ? 7 DC A "O5'" 1 ATOM 126 C "C5'" . DC A 1 7 ? -39.578 44.473 -1.605 1.00 22.32 ? 7 DC A "C5'" 1 ATOM 127 C "C4'" . DC A 1 7 ? -38.168 44.536 -1.074 1.00 19.95 ? 7 DC A "C4'" 1 ATOM 128 O "O4'" . DC A 1 7 ? -38.022 43.484 -0.104 1.00 19.42 ? 7 DC A "O4'" 1 ATOM 129 C "C3'" . DC A 1 7 ? -37.093 44.216 -2.078 1.00 17.56 ? 7 DC A "C3'" 1 ATOM 130 O "O3'" . DC A 1 7 ? -36.851 45.395 -2.869 1.00 18.08 ? 7 DC A "O3'" 1 ATOM 131 C "C2'" . DC A 1 7 ? -35.935 43.889 -1.142 1.00 18.52 ? 7 DC A "C2'" 1 ATOM 132 C "C1'" . DC A 1 7 ? -36.636 43.365 0.120 1.00 18.07 ? 7 DC A "C1'" 1 ATOM 133 N N1 . DC A 1 7 ? -36.338 41.952 0.388 1.00 16.48 ? 7 DC A N1 1 ATOM 134 C C2 . DC A 1 7 ? -35.752 41.596 1.609 1.00 15.98 ? 7 DC A C2 1 ATOM 135 O O2 . DC A 1 7 ? -35.609 42.462 2.493 1.00 16.95 ? 7 DC A O2 1 ATOM 136 N N3 . DC A 1 7 ? -35.430 40.307 1.824 1.00 15.24 ? 7 DC A N3 1 ATOM 137 C C4 . DC A 1 7 ? -35.677 39.390 0.890 1.00 14.69 ? 7 DC A C4 1 ATOM 138 N N4 . DC A 1 7 ? -35.286 38.151 1.128 1.00 15.69 ? 7 DC A N4 1 ATOM 139 C C5 . DC A 1 7 ? -36.279 39.723 -0.351 1.00 15.80 ? 7 DC A C5 1 ATOM 140 C C6 . DC A 1 7 ? -36.567 41.008 -0.568 1.00 16.00 ? 7 DC A C6 1 ATOM 141 P P . DC A 1 8 ? -36.176 45.266 -4.318 1.00 20.55 ? 8 DC A P 1 ATOM 142 O OP1 . DC A 1 8 ? -36.279 46.638 -4.935 1.00 27.23 ? 8 DC A OP1 1 ATOM 143 O OP2 . DC A 1 8 ? -36.668 44.052 -4.952 1.00 23.18 ? 8 DC A OP2 1 ATOM 144 O "O5'" . DC A 1 8 ? -34.625 45.064 -4.020 1.00 19.53 ? 8 DC A "O5'" 1 ATOM 145 C "C5'" . DC A 1 8 ? -33.882 46.122 -3.443 1.00 17.03 ? 8 DC A "C5'" 1 ATOM 146 C "C4'" . DC A 1 8 ? -32.464 45.658 -3.189 1.00 16.33 ? 8 DC A "C4'" 1 ATOM 147 O "O4'" . DC A 1 8 ? -32.508 44.650 -2.163 1.00 16.19 ? 8 DC A "O4'" 1 ATOM 148 C "C3'" . DC A 1 8 ? -31.774 44.967 -4.354 1.00 15.81 ? 8 DC A "C3'" 1 ATOM 149 O "O3'" . DC A 1 8 ? -31.195 46.028 -5.102 1.00 17.51 ? 8 DC A "O3'" 1 ATOM 150 C "C2'" . DC A 1 8 ? -30.711 44.195 -3.634 1.00 15.90 ? 8 DC A "C2'" 1 ATOM 151 C "C1'" . DC A 1 8 ? -31.375 43.810 -2.323 1.00 15.30 ? 8 DC A "C1'" 1 ATOM 152 N N1 . DC A 1 8 ? -31.832 42.409 -2.229 1.00 14.96 ? 8 DC A N1 1 ATOM 153 C C2 . DC A 1 8 ? -31.117 41.511 -1.426 1.00 15.86 ? 8 DC A C2 1 ATOM 154 O O2 . DC A 1 8 ? -30.052 41.877 -0.928 1.00 15.45 ? 8 DC A O2 1 ATOM 155 N N3 . DC A 1 8 ? -31.574 40.259 -1.267 1.00 14.64 ? 8 DC A N3 1 ATOM 156 C C4 . DC A 1 8 ? -32.686 39.873 -1.888 1.00 15.42 ? 8 DC A C4 1 ATOM 157 N N4 . DC A 1 8 ? -33.114 38.645 -1.686 1.00 15.89 ? 8 DC A N4 1 ATOM 158 C C5 . DC A 1 8 ? -33.407 40.746 -2.745 1.00 15.56 ? 8 DC A C5 1 ATOM 159 C C6 . DC A 1 8 ? -32.962 41.999 -2.869 1.00 14.09 ? 8 DC A C6 1 ATOM 160 P P . DG A 1 9 ? -30.830 45.816 -6.672 1.00 18.64 ? 9 DG A P 1 ATOM 161 O OP1 . DG A 1 9 ? -30.752 47.232 -7.292 1.00 21.33 ? 9 DG A OP1 1 ATOM 162 O OP2 . DG A 1 9 ? -31.700 44.790 -7.275 1.00 18.32 ? 9 DG A OP2 1 ATOM 163 O "O5'" . DG A 1 9 ? -29.313 45.262 -6.610 1.00 18.46 ? 9 DG A "O5'" 1 ATOM 164 C "C5'" . DG A 1 9 ? -28.230 46.025 -6.075 1.00 17.39 ? 9 DG A "C5'" 1 ATOM 165 C "C4'" . DG A 1 9 ? -27.060 45.079 -5.963 1.00 18.26 ? 9 DG A "C4'" 1 ATOM 166 O "O4'" . DG A 1 9 ? -27.444 44.151 -4.931 1.00 18.12 ? 9 DG A "O4'" 1 ATOM 167 C "C3'" . DG A 1 9 ? -26.826 44.220 -7.196 1.00 19.37 ? 9 DG A "C3'" 1 ATOM 168 O "O3'" . DG A 1 9 ? -25.687 44.787 -7.840 1.00 23.06 ? 9 DG A "O3'" 1 ATOM 169 C "C2'" . DG A 1 9 ? -26.371 42.922 -6.631 1.00 20.39 ? 9 DG A "C2'" 1 ATOM 170 C "C1'" . DG A 1 9 ? -27.056 42.860 -5.299 1.00 17.71 ? 9 DG A "C1'" 1 ATOM 171 N N9 . DG A 1 9 ? -28.221 41.985 -5.251 1.00 16.73 ? 9 DG A N9 1 ATOM 172 C C8 . DG A 1 9 ? -29.361 41.973 -6.025 1.00 17.21 ? 9 DG A C8 1 ATOM 173 N N7 . DG A 1 9 ? -30.183 41.015 -5.709 1.00 17.01 ? 9 DG A N7 1 ATOM 174 C C5 . DG A 1 9 ? -29.547 40.349 -4.666 1.00 14.99 ? 9 DG A C5 1 ATOM 175 C C6 . DG A 1 9 ? -29.917 39.184 -3.951 1.00 14.66 ? 9 DG A C6 1 ATOM 176 O O6 . DG A 1 9 ? -30.920 38.478 -4.082 1.00 16.48 ? 9 DG A O6 1 ATOM 177 N N1 . DG A 1 9 ? -28.955 38.833 -3.019 1.00 13.94 ? 9 DG A N1 1 ATOM 178 C C2 . DG A 1 9 ? -27.776 39.495 -2.810 1.00 14.92 ? 9 DG A C2 1 ATOM 179 N N2 . DG A 1 9 ? -26.990 39.007 -1.841 1.00 15.38 ? 9 DG A N2 1 ATOM 180 N N3 . DG A 1 9 ? -27.416 40.578 -3.466 1.00 15.29 ? 9 DG A N3 1 ATOM 181 C C4 . DG A 1 9 ? -28.341 40.945 -4.370 1.00 15.54 ? 9 DG A C4 1 ATOM 182 P P . DA A 1 10 ? -25.189 44.302 -9.311 1.00 24.88 ? 10 DA A P 1 ATOM 183 O OP1 . DA A 1 10 ? -24.481 45.468 -9.883 1.00 31.02 ? 10 DA A OP1 1 ATOM 184 O OP2 . DA A 1 10 ? -26.256 43.520 -10.002 1.00 22.98 ? 10 DA A OP2 1 ATOM 185 O "O5'" . DA A 1 10 ? -24.111 43.189 -8.947 1.00 25.17 ? 10 DA A "O5'" 1 ATOM 186 C "C5'" . DA A 1 10 ? -22.955 43.482 -8.158 1.00 22.64 ? 10 DA A "C5'" 1 ATOM 187 C "C4'" . DA A 1 10 ? -22.179 42.201 -7.940 1.00 21.58 ? 10 DA A "C4'" 1 ATOM 188 O "O4'" . DA A 1 10 ? -23.034 41.218 -7.299 1.00 22.68 ? 10 DA A "O4'" 1 ATOM 189 C "C3'" . DA A 1 10 ? -21.635 41.466 -9.161 1.00 20.97 ? 10 DA A "C3'" 1 ATOM 190 O "O3'" . DA A 1 10 ? -20.384 41.975 -9.589 1.00 23.45 ? 10 DA A "O3'" 1 ATOM 191 C "C2'" . DA A 1 10 ? -21.496 40.055 -8.647 1.00 21.36 ? 10 DA A "C2'" 1 ATOM 192 C "C1'" . DA A 1 10 ? -22.702 39.909 -7.774 1.00 23.56 ? 10 DA A "C1'" 1 ATOM 193 N N9 . DA A 1 10 ? -23.826 39.374 -8.524 1.00 21.65 ? 10 DA A N9 1 ATOM 194 C C8 . DA A 1 10 ? -24.520 39.943 -9.562 1.00 23.50 ? 10 DA A C8 1 ATOM 195 N N7 . DA A 1 10 ? -25.498 39.202 -10.005 1.00 24.57 ? 10 DA A N7 1 ATOM 196 C C5 . DA A 1 10 ? -25.370 38.024 -9.289 1.00 22.31 ? 10 DA A C5 1 ATOM 197 C C6 . DA A 1 10 ? -26.090 36.822 -9.312 1.00 20.73 ? 10 DA A C6 1 ATOM 198 N N6 . DA A 1 10 ? -27.124 36.589 -10.127 1.00 23.09 ? 10 DA A N6 1 ATOM 199 N N1 . DA A 1 10 ? -25.764 35.886 -8.401 1.00 19.86 ? 10 DA A N1 1 ATOM 200 C C2 . DA A 1 10 ? -24.739 36.127 -7.567 1.00 18.99 ? 10 DA A C2 1 ATOM 201 N N3 . DA A 1 10 ? -23.955 37.186 -7.495 1.00 20.38 ? 10 DA A N3 1 ATOM 202 C C4 . DA A 1 10 ? -24.340 38.119 -8.376 1.00 20.98 ? 10 DA A C4 1 HETATM 203 RU RU . RKL B 2 . ? -45.596 30.883 8.876 1.00 14.78 ? 101 RKL A RU 1 HETATM 204 C C1 . RKL B 2 . ? -47.856 30.370 10.493 1.00 15.65 ? 101 RKL A C1 1 HETATM 205 N N1 . RKL B 2 . ? -45.840 29.219 9.961 1.00 16.63 ? 101 RKL A N1 1 HETATM 206 C C2 . RKL B 2 . ? -48.224 32.372 9.356 1.00 15.80 ? 101 RKL A C2 1 HETATM 207 N N2 . RKL B 2 . ? -47.541 31.260 9.500 1.00 15.60 ? 101 RKL A N2 1 HETATM 208 C C3 . RKL B 2 . ? -49.436 32.538 10.081 1.00 17.46 ? 101 RKL A C3 1 HETATM 209 N N3 . RKL B 2 . ? -50.592 29.644 12.797 1.00 19.87 ? 101 RKL A N3 1 HETATM 210 C C4 . RKL B 2 . ? -49.842 31.571 10.981 1.00 16.45 ? 101 RKL A C4 1 HETATM 211 N N4 . RKL B 2 . ? -48.960 27.428 13.221 1.00 18.28 ? 101 RKL A N4 1 HETATM 212 C C5 . RKL B 2 . ? -49.063 30.453 11.226 1.00 16.00 ? 101 RKL A C5 1 HETATM 213 N N5 . RKL B 2 . ? -44.795 31.706 10.568 1.00 14.25 ? 101 RKL A N5 1 HETATM 214 C C6 . RKL B 2 . ? -49.431 29.455 12.125 1.00 15.10 ? 101 RKL A C6 1 HETATM 215 N N6 . RKL B 2 . ? -43.122 32.675 12.646 1.00 14.88 ? 101 RKL A N6 1 HETATM 216 C C7 . RKL B 2 . ? -48.632 28.360 12.325 1.00 17.01 ? 101 RKL A C7 1 HETATM 217 N N7 . RKL B 2 . ? -40.821 30.141 8.398 1.00 15.25 ? 101 RKL A N7 1 HETATM 218 C C8 . RKL B 2 . ? -47.466 28.180 11.577 1.00 15.47 ? 101 RKL A C8 1 HETATM 219 N N8 . RKL B 2 . ? -43.642 30.484 8.379 1.00 14.09 ? 101 RKL A N8 1 HETATM 220 C C9 . RKL B 2 . ? -46.641 27.101 11.670 1.00 15.55 ? 101 RKL A C9 1 HETATM 221 N N9 . RKL B 2 . ? -46.313 30.100 7.143 1.00 14.91 ? 101 RKL A N9 1 HETATM 222 C C10 . RKL B 2 . ? -47.072 29.206 10.666 1.00 14.79 ? 101 RKL A C10 1 HETATM 223 N N10 . RKL B 2 . ? -46.961 29.373 4.540 1.00 17.86 ? 101 RKL A N10 1 HETATM 224 C C11 . RKL B 2 . ? -45.450 27.082 10.883 1.00 16.11 ? 101 RKL A C11 1 HETATM 225 N N11 . RKL B 2 . ? -45.598 34.518 5.733 1.00 16.55 ? 101 RKL A N11 1 HETATM 226 C C12 . RKL B 2 . ? -45.113 28.136 9.948 1.00 15.28 ? 101 RKL A C12 1 HETATM 227 N N12 . RKL B 2 . ? -45.448 32.602 7.715 1.00 15.03 ? 101 RKL A N12 1 HETATM 228 C C13 . RKL B 2 . ? -50.091 27.633 13.899 1.00 19.45 ? 101 RKL A C13 1 HETATM 229 C C14 . RKL B 2 . ? -50.382 26.627 14.829 1.00 22.59 ? 101 RKL A C14 1 HETATM 230 C C15 . RKL B 2 . ? -50.897 28.734 13.693 1.00 20.07 ? 101 RKL A C15 1 HETATM 231 C C16 . RKL B 2 . ? -52.064 28.948 14.417 1.00 22.76 ? 101 RKL A C16 1 HETATM 232 C C17 . RKL B 2 . ? -52.390 27.976 15.330 1.00 25.05 ? 101 RKL A C17 1 HETATM 233 C C18 . RKL B 2 . ? -51.586 26.831 15.531 1.00 24.29 ? 101 RKL A C18 1 HETATM 234 C C19 . RKL B 2 . ? -43.422 31.575 10.553 1.00 13.85 ? 101 RKL A C19 1 HETATM 235 C C20 . RKL B 2 . ? -45.291 32.372 11.599 1.00 15.18 ? 101 RKL A C20 1 HETATM 236 C C21 . RKL B 2 . ? -44.477 32.833 12.609 1.00 14.98 ? 101 RKL A C21 1 HETATM 237 C C22 . RKL B 2 . ? -42.557 32.028 11.606 1.00 14.43 ? 101 RKL A C22 1 HETATM 238 C C23 . RKL B 2 . ? -41.192 31.854 11.543 1.00 13.61 ? 101 RKL A C23 1 HETATM 239 C C24 . RKL B 2 . ? -40.652 31.248 10.495 1.00 14.21 ? 101 RKL A C24 1 HETATM 240 C C25 . RKL B 2 . ? -41.448 30.764 9.454 1.00 14.16 ? 101 RKL A C25 1 HETATM 241 C C26 . RKL B 2 . ? -42.851 30.870 9.467 1.00 14.19 ? 101 RKL A C26 1 HETATM 242 C C27 . RKL B 2 . ? -41.575 29.667 7.441 1.00 15.74 ? 101 RKL A C27 1 HETATM 243 C C28 . RKL B 2 . ? -42.949 29.797 7.475 1.00 16.62 ? 101 RKL A C28 1 HETATM 244 C C29 . RKL B 2 . ? -46.225 30.989 6.128 1.00 16.10 ? 101 RKL A C29 1 HETATM 245 C C30 . RKL B 2 . ? -46.607 28.860 6.799 1.00 17.18 ? 101 RKL A C30 1 HETATM 246 C C31 . RKL B 2 . ? -46.968 28.537 5.469 1.00 17.95 ? 101 RKL A C31 1 HETATM 247 C C32 . RKL B 2 . ? -46.608 30.643 4.812 1.00 16.39 ? 101 RKL A C32 1 HETATM 248 C C33 . RKL B 2 . ? -46.605 31.643 3.767 1.00 16.07 ? 101 RKL A C33 1 HETATM 249 C C34 . RKL B 2 . ? -46.253 32.909 4.060 1.00 15.74 ? 101 RKL A C34 1 HETATM 250 C C35 . RKL B 2 . ? -45.896 33.243 5.410 1.00 15.74 ? 101 RKL A C35 1 HETATM 251 C C36 . RKL B 2 . ? -45.873 32.299 6.454 1.00 14.94 ? 101 RKL A C36 1 HETATM 252 C C37 . RKL B 2 . ? -45.241 34.787 6.975 1.00 16.66 ? 101 RKL A C37 1 HETATM 253 C C38 . RKL B 2 . ? -45.203 33.844 7.952 1.00 15.99 ? 101 RKL A C38 1 HETATM 254 BA BA . BA C 3 . ? -34.879 33.409 9.606 1.00 15.45 ? 102 BA A BA 1 HETATM 255 CL CL . CL D 4 . ? -34.966 34.966 6.868 0.50 16.56 ? 103 CL A CL 1 HETATM 256 O O . HOH E 5 . ? -18.492 41.711 -7.538 1.00 22.81 ? 201 HOH A O 1 HETATM 257 O O . HOH E 5 . ? -42.793 32.821 5.598 1.00 16.52 ? 202 HOH A O 1 HETATM 258 O O . HOH E 5 . ? -35.080 33.448 12.432 1.00 16.73 ? 203 HOH A O 1 HETATM 259 O O . HOH E 5 . ? -32.888 31.771 10.801 1.00 23.54 ? 204 HOH A O 1 HETATM 260 O O . HOH E 5 . ? -36.039 35.486 3.424 1.00 15.99 ? 205 HOH A O 1 HETATM 261 O O . HOH E 5 . ? -43.321 30.370 4.106 1.00 23.83 ? 206 HOH A O 1 HETATM 262 O O . HOH E 5 . ? -43.729 29.220 12.633 1.00 19.51 ? 207 HOH A O 1 HETATM 263 O O . HOH E 5 . ? -33.664 31.590 7.693 1.00 20.55 ? 208 HOH A O 1 HETATM 264 O O . HOH E 5 . ? -37.855 35.204 1.224 1.00 21.72 ? 209 HOH A O 1 HETATM 265 O O . HOH E 5 . ? -40.079 43.994 2.404 1.00 33.05 ? 210 HOH A O 1 HETATM 266 O O . HOH E 5 . ? -34.863 32.532 3.466 1.00 26.60 ? 211 HOH A O 1 HETATM 267 O O . HOH E 5 . ? -32.599 41.157 -6.894 1.00 38.82 ? 212 HOH A O 1 HETATM 268 O O . HOH E 5 . ? -40.777 26.839 9.586 1.00 41.60 ? 213 HOH A O 1 HETATM 269 O O . HOH E 5 . ? -33.016 38.377 -5.881 1.00 32.72 ? 214 HOH A O 1 HETATM 270 O O . HOH E 5 . ? -30.775 43.219 -9.351 1.00 37.62 ? 215 HOH A O 1 HETATM 271 O O . HOH E 5 . ? -30.829 24.844 8.069 1.00 33.10 ? 216 HOH A O 1 HETATM 272 O O . HOH E 5 . ? -46.264 36.782 3.929 1.00 30.45 ? 217 HOH A O 1 HETATM 273 O O . HOH E 5 . ? -30.614 27.246 5.190 1.00 39.81 ? 218 HOH A O 1 HETATM 274 O O . HOH E 5 . ? -42.606 27.659 4.811 1.00 37.05 ? 219 HOH A O 1 HETATM 275 O O . HOH E 5 . ? -35.637 35.804 -0.567 1.00 34.16 ? 220 HOH A O 1 HETATM 276 O O . HOH E 5 . ? -45.594 35.676 10.802 1.00 39.44 ? 221 HOH A O 1 HETATM 277 O O . HOH E 5 . ? -37.229 40.703 -4.003 1.00 44.06 ? 222 HOH A O 1 HETATM 278 O O . HOH E 5 . ? -33.879 23.666 6.714 1.00 40.06 ? 223 HOH A O 1 HETATM 279 O O . HOH E 5 . ? -44.106 26.378 7.086 1.00 33.10 ? 224 HOH A O 1 HETATM 280 O O . HOH E 5 . ? -20.009 40.057 -5.193 1.00 31.33 ? 225 HOH A O 1 HETATM 281 O O . HOH E 5 . ? -46.520 28.183 1.831 1.00 32.38 ? 226 HOH A O 1 HETATM 282 O O . HOH E 5 . ? -46.327 42.225 -1.302 1.00 43.09 ? 227 HOH A O 1 HETATM 283 O O . HOH E 5 . ? -35.368 41.740 -5.440 1.00 41.20 ? 228 HOH A O 1 HETATM 284 O O . HOH E 5 . ? -31.319 32.010 13.218 1.00 38.97 ? 229 HOH A O 1 HETATM 285 O O . HOH E 5 . ? -41.221 41.221 6.868 0.50 42.65 ? 230 HOH A O 1 HETATM 286 O O . HOH E 5 . ? -35.565 37.670 -3.418 1.00 31.19 ? 231 HOH A O 1 HETATM 287 O O . HOH E 5 . ? -41.591 32.715 -3.503 1.00 45.81 ? 232 HOH A O 1 HETATM 288 O O . HOH E 5 . ? -31.797 47.409 -9.988 1.00 38.77 ? 233 HOH A O 1 HETATM 289 O O . HOH E 5 . ? -32.430 49.281 -5.605 1.00 41.81 ? 234 HOH A O 1 HETATM 290 O O . HOH E 5 . ? -34.205 33.977 16.967 1.00 38.23 ? 235 HOH A O 1 HETATM 291 O O . HOH E 5 . ? -36.181 32.338 1.077 1.00 37.82 ? 236 HOH A O 1 HETATM 292 O O . HOH E 5 . ? -29.673 31.907 9.399 1.00 36.27 ? 237 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RKL 1 101 11 RKL RKL A . C 3 BA 1 102 12 BA BA A . D 4 CL 1 103 13 CL CL A . E 5 HOH 1 201 1 HOH HOH A . E 5 HOH 2 202 2 HOH HOH A . E 5 HOH 3 203 3 HOH HOH A . E 5 HOH 4 204 4 HOH HOH A . E 5 HOH 5 205 5 HOH HOH A . E 5 HOH 6 206 6 HOH HOH A . E 5 HOH 7 207 7 HOH HOH A . E 5 HOH 8 208 8 HOH HOH A . E 5 HOH 9 209 9 HOH HOH A . E 5 HOH 10 210 10 HOH HOH A . E 5 HOH 11 211 11 HOH HOH A . E 5 HOH 12 212 12 HOH HOH A . E 5 HOH 13 213 13 HOH HOH A . E 5 HOH 14 214 14 HOH HOH A . E 5 HOH 15 215 15 HOH HOH A . E 5 HOH 16 216 16 HOH HOH A . E 5 HOH 17 217 17 HOH HOH A . E 5 HOH 18 218 18 HOH HOH A . E 5 HOH 19 219 19 HOH HOH A . E 5 HOH 20 220 20 HOH HOH A . E 5 HOH 21 221 23 HOH HOH A . E 5 HOH 22 222 24 HOH HOH A . E 5 HOH 23 223 26 HOH HOH A . E 5 HOH 24 224 29 HOH HOH A . E 5 HOH 25 225 30 HOH HOH A . E 5 HOH 26 226 31 HOH HOH A . E 5 HOH 27 227 32 HOH HOH A . E 5 HOH 28 228 33 HOH HOH A . E 5 HOH 29 229 34 HOH HOH A . E 5 HOH 30 230 35 HOH HOH A . E 5 HOH 31 231 36 HOH HOH A . E 5 HOH 32 232 37 HOH HOH A . E 5 HOH 33 233 38 HOH HOH A . E 5 HOH 34 234 39 HOH HOH A . E 5 HOH 35 235 40 HOH HOH A . E 5 HOH 36 236 41 HOH HOH A . E 5 HOH 37 237 42 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1970 ? 1 MORE -55 ? 1 'SSA (A^2)' 4760 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 13.7350000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CL 103 ? D CL . 2 1 A HOH 230 ? E HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? E HOH . ? A HOH 203 ? 1_555 73.6 ? 2 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? E HOH . ? A HOH 204 ? 1_555 131.8 ? 3 O ? E HOH . ? A HOH 203 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? E HOH . ? A HOH 204 ? 1_555 68.8 ? 4 O6 ? A DG 4 ? A DG 4 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? E HOH . ? A HOH 208 ? 1_555 129.0 ? 5 O ? E HOH . ? A HOH 203 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? E HOH . ? A HOH 208 ? 1_555 134.0 ? 6 O ? E HOH . ? A HOH 204 ? 1_555 BA ? C BA . ? A BA 102 ? 1_555 O ? E HOH . ? A HOH 208 ? 1_555 67.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-09-24 2 'Structure model' 1 1 2014-12-03 3 'Structure model' 1 2 2015-01-07 4 'Structure model' 1 3 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.pdbx_dist_value' 17 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 29 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 30 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GDA 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0032 ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 2 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 P _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OP1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 2 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.18 _pdbx_validate_rmsd_angle.angle_target_value 105.70 _pdbx_validate_rmsd_angle.angle_deviation -6.52 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 CL CL CL N N 2 DA OP3 O N N 3 DA P P N N 4 DA OP1 O N N 5 DA OP2 O N N 6 DA "O5'" O N N 7 DA "C5'" C N N 8 DA "C4'" C N R 9 DA "O4'" O N N 10 DA "C3'" C N S 11 DA "O3'" O N N 12 DA "C2'" C N N 13 DA "C1'" C N R 14 DA N9 N Y N 15 DA C8 C Y N 16 DA N7 N Y N 17 DA C5 C Y N 18 DA C6 C Y N 19 DA N6 N N N 20 DA N1 N Y N 21 DA C2 C Y N 22 DA N3 N Y N 23 DA C4 C Y N 24 DA HOP3 H N N 25 DA HOP2 H N N 26 DA "H5'" H N N 27 DA "H5''" H N N 28 DA "H4'" H N N 29 DA "H3'" H N N 30 DA "HO3'" H N N 31 DA "H2'" H N N 32 DA "H2''" H N N 33 DA "H1'" H N N 34 DA H8 H N N 35 DA H61 H N N 36 DA H62 H N N 37 DA H2 H N N 38 DC OP3 O N N 39 DC P P N N 40 DC OP1 O N N 41 DC OP2 O N N 42 DC "O5'" O N N 43 DC "C5'" C N N 44 DC "C4'" C N R 45 DC "O4'" O N N 46 DC "C3'" C N S 47 DC "O3'" O N N 48 DC "C2'" C N N 49 DC "C1'" C N R 50 DC N1 N N N 51 DC C2 C N N 52 DC O2 O N N 53 DC N3 N N N 54 DC C4 C N N 55 DC N4 N N N 56 DC C5 C N N 57 DC C6 C N N 58 DC HOP3 H N N 59 DC HOP2 H N N 60 DC "H5'" H N N 61 DC "H5''" H N N 62 DC "H4'" H N N 63 DC "H3'" H N N 64 DC "HO3'" H N N 65 DC "H2'" H N N 66 DC "H2''" H N N 67 DC "H1'" H N N 68 DC H41 H N N 69 DC H42 H N N 70 DC H5 H N N 71 DC H6 H N N 72 DG OP3 O N N 73 DG P P N N 74 DG OP1 O N N 75 DG OP2 O N N 76 DG "O5'" O N N 77 DG "C5'" C N N 78 DG "C4'" C N R 79 DG "O4'" O N N 80 DG "C3'" C N S 81 DG "O3'" O N N 82 DG "C2'" C N N 83 DG "C1'" C N R 84 DG N9 N Y N 85 DG C8 C Y N 86 DG N7 N Y N 87 DG C5 C Y N 88 DG C6 C N N 89 DG O6 O N N 90 DG N1 N N N 91 DG C2 C N N 92 DG N2 N N N 93 DG N3 N N N 94 DG C4 C Y N 95 DG HOP3 H N N 96 DG HOP2 H N N 97 DG "H5'" H N N 98 DG "H5''" H N N 99 DG "H4'" H N N 100 DG "H3'" H N N 101 DG "HO3'" H N N 102 DG "H2'" H N N 103 DG "H2''" H N N 104 DG "H1'" H N N 105 DG H8 H N N 106 DG H1 H N N 107 DG H21 H N N 108 DG H22 H N N 109 DT OP3 O N N 110 DT P P N N 111 DT OP1 O N N 112 DT OP2 O N N 113 DT "O5'" O N N 114 DT "C5'" C N N 115 DT "C4'" C N R 116 DT "O4'" O N N 117 DT "C3'" C N S 118 DT "O3'" O N N 119 DT "C2'" C N N 120 DT "C1'" C N R 121 DT N1 N N N 122 DT C2 C N N 123 DT O2 O N N 124 DT N3 N N N 125 DT C4 C N N 126 DT O4 O N N 127 DT C5 C N N 128 DT C7 C N N 129 DT C6 C N N 130 DT HOP3 H N N 131 DT HOP2 H N N 132 DT "H5'" H N N 133 DT "H5''" H N N 134 DT "H4'" H N N 135 DT "H3'" H N N 136 DT "HO3'" H N N 137 DT "H2'" H N N 138 DT "H2''" H N N 139 DT "H1'" H N N 140 DT H3 H N N 141 DT H71 H N N 142 DT H72 H N N 143 DT H73 H N N 144 DT H6 H N N 145 HOH O O N N 146 HOH H1 H N N 147 HOH H2 H N N 148 RKL RU RU N N 149 RKL C1 C Y N 150 RKL N1 N Y N 151 RKL C2 C Y N 152 RKL N2 N Y N 153 RKL C3 C Y N 154 RKL N3 N Y N 155 RKL C4 C Y N 156 RKL N4 N Y N 157 RKL C5 C Y N 158 RKL N5 N Y N 159 RKL C6 C Y N 160 RKL N6 N Y N 161 RKL C7 C Y N 162 RKL N7 N Y N 163 RKL C8 C Y N 164 RKL N8 N Y N 165 RKL C9 C Y N 166 RKL N9 N Y N 167 RKL C10 C Y N 168 RKL N10 N Y N 169 RKL C11 C Y N 170 RKL N11 N Y N 171 RKL C12 C Y N 172 RKL N12 N Y N 173 RKL C13 C Y N 174 RKL C14 C Y N 175 RKL C15 C Y N 176 RKL C16 C Y N 177 RKL C17 C Y N 178 RKL C18 C Y N 179 RKL C19 C Y N 180 RKL C20 C Y N 181 RKL C21 C Y N 182 RKL C22 C Y N 183 RKL C23 C Y N 184 RKL C24 C Y N 185 RKL C25 C Y N 186 RKL C26 C Y N 187 RKL C27 C Y N 188 RKL C28 C Y N 189 RKL C29 C Y N 190 RKL C30 C Y N 191 RKL C31 C Y N 192 RKL C32 C Y N 193 RKL C33 C Y N 194 RKL C34 C Y N 195 RKL C35 C Y N 196 RKL C36 C Y N 197 RKL C37 C Y N 198 RKL C38 C Y N 199 RKL H2 H N N 200 RKL H3 H N N 201 RKL H4 H N N 202 RKL H9 H N N 203 RKL H11 H N N 204 RKL H12 H N N 205 RKL H14 H N N 206 RKL H16 H N N 207 RKL H17 H N N 208 RKL H18 H N N 209 RKL H20 H N N 210 RKL H21 H N N 211 RKL H23 H N N 212 RKL H24 H N N 213 RKL H27 H N N 214 RKL H28 H N N 215 RKL H30 H N N 216 RKL H31 H N N 217 RKL H33 H N N 218 RKL H34 H N N 219 RKL H37 H N N 220 RKL H38 H N N 221 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 RKL RU N1 sing N N 152 RKL RU N2 sing N N 153 RKL RU N5 sing N N 154 RKL RU N8 sing N N 155 RKL RU N9 sing N N 156 RKL RU N12 sing N N 157 RKL C1 N2 doub Y N 158 RKL C1 C5 sing Y N 159 RKL C1 C10 sing Y N 160 RKL N1 C10 doub Y N 161 RKL N1 C12 sing Y N 162 RKL C2 N2 sing Y N 163 RKL C2 C3 doub Y N 164 RKL C2 H2 sing N N 165 RKL C3 C4 sing Y N 166 RKL C3 H3 sing N N 167 RKL N3 C6 doub Y N 168 RKL N3 C15 sing Y N 169 RKL C4 C5 doub Y N 170 RKL C4 H4 sing N N 171 RKL N4 C7 doub Y N 172 RKL N4 C13 sing Y N 173 RKL C5 C6 sing Y N 174 RKL N5 C19 doub Y N 175 RKL N5 C20 sing Y N 176 RKL C6 C7 sing Y N 177 RKL N6 C21 sing Y N 178 RKL N6 C22 doub Y N 179 RKL C7 C8 sing Y N 180 RKL N7 C25 doub Y N 181 RKL N7 C27 sing Y N 182 RKL C8 C9 doub Y N 183 RKL C8 C10 sing Y N 184 RKL N8 C26 doub Y N 185 RKL N8 C28 sing Y N 186 RKL C9 C11 sing Y N 187 RKL C9 H9 sing N N 188 RKL N9 C29 doub Y N 189 RKL N9 C30 sing Y N 190 RKL N10 C31 sing Y N 191 RKL N10 C32 doub Y N 192 RKL C11 C12 doub Y N 193 RKL C11 H11 sing N N 194 RKL N11 C35 doub Y N 195 RKL N11 C37 sing Y N 196 RKL C12 H12 sing N N 197 RKL N12 C36 doub Y N 198 RKL N12 C38 sing Y N 199 RKL C13 C14 sing Y N 200 RKL C13 C15 doub Y N 201 RKL C14 C18 doub Y N 202 RKL C14 H14 sing N N 203 RKL C15 C16 sing Y N 204 RKL C16 C17 doub Y N 205 RKL C16 H16 sing N N 206 RKL C17 C18 sing Y N 207 RKL C17 H17 sing N N 208 RKL C18 H18 sing N N 209 RKL C19 C22 sing Y N 210 RKL C19 C26 sing Y N 211 RKL C20 C21 doub Y N 212 RKL C20 H20 sing N N 213 RKL C21 H21 sing N N 214 RKL C22 C23 sing Y N 215 RKL C23 C24 doub Y N 216 RKL C23 H23 sing N N 217 RKL C24 C25 sing Y N 218 RKL C24 H24 sing N N 219 RKL C25 C26 sing Y N 220 RKL C27 C28 doub Y N 221 RKL C27 H27 sing N N 222 RKL C28 H28 sing N N 223 RKL C29 C32 sing Y N 224 RKL C29 C36 sing Y N 225 RKL C30 C31 doub Y N 226 RKL C30 H30 sing N N 227 RKL C31 H31 sing N N 228 RKL C32 C33 sing Y N 229 RKL C33 C34 doub Y N 230 RKL C33 H33 sing N N 231 RKL C34 C35 sing Y N 232 RKL C34 H34 sing N N 233 RKL C35 C36 sing Y N 234 RKL C37 C38 doub Y N 235 RKL C37 H37 sing N N 236 RKL C38 H38 sing N N 237 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4LTI 'double helix' 4LTI 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 A DG 9 8_555 0.168 -0.124 0.023 -7.820 3.364 -1.627 1 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DG 3 1_555 A DC 8 8_555 -0.245 -0.038 0.276 23.210 -9.383 -0.509 2 A_DG3:DC8_A A 3 ? A 8 ? 19 1 1 A DG 4 1_555 A DC 7 8_555 -0.274 -0.153 -0.219 -4.657 6.361 -2.076 3 A_DG4:DC7_A A 4 ? A 7 ? 19 1 1 A DC 5 1_555 A DG 6 8_555 0.096 -0.124 -0.111 9.414 -1.063 -1.769 4 A_DC5:DG6_A A 5 ? A 6 ? 19 1 1 A DG 6 1_555 A DC 5 8_555 -0.096 -0.124 -0.111 -9.414 -1.063 -1.769 5 A_DG6:DC5_A A 6 ? A 5 ? 19 1 1 A DC 7 1_555 A DG 4 8_555 0.274 -0.153 -0.219 4.657 6.361 -2.076 6 A_DC7:DG4_A A 7 ? A 4 ? 19 1 1 A DC 8 1_555 A DG 3 8_555 0.245 -0.038 0.276 -23.210 -9.383 -0.509 7 A_DC8:DG3_A A 8 ? A 3 ? 19 1 1 A DG 9 1_555 A DC 2 8_555 -0.168 -0.124 0.023 7.820 3.364 -1.627 8 A_DG9:DC2_A A 9 ? A 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 A DG 9 8_555 A DG 3 1_555 A DC 8 8_555 -0.069 1.550 2.793 -0.344 5.209 22.436 2.221 0.063 3.069 13.160 0.868 23.027 1 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DG 3 1_555 A DC 8 8_555 A DG 4 1_555 A DC 7 8_555 -0.452 0.578 4.989 -1.835 48.659 20.095 -4.936 0.300 2.517 68.866 2.598 52.443 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DG 4 1_555 A DC 7 8_555 A DC 5 1_555 A DG 6 8_555 -1.103 0.047 2.981 -1.954 2.071 35.449 -0.200 1.544 3.034 3.394 3.203 35.559 3 AA_DG4DC5:DG6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DC 5 1_555 A DG 6 8_555 A DG 6 1_555 A DC 5 8_555 0.000 1.679 4.687 0.000 51.068 15.452 -4.429 0.000 3.009 74.282 0.000 53.204 4 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DG 6 1_555 A DC 5 8_555 A DC 7 1_555 A DG 4 8_555 1.103 0.047 2.981 1.954 2.071 35.449 -0.200 -1.544 3.034 3.394 -3.203 35.559 5 AA_DG6DC7:DG4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DC 7 1_555 A DG 4 8_555 A DC 8 1_555 A DG 3 8_555 0.452 0.578 4.989 1.835 48.659 20.095 -4.936 -0.300 2.517 68.866 -2.598 52.443 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DC 8 1_555 A DG 3 8_555 A DG 9 1_555 A DC 2 8_555 0.069 1.550 2.793 0.344 5.209 22.436 2.221 -0.063 3.069 13.160 -0.868 23.027 7 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'Ru(tap)2(dppz) complex' RKL 3 'BARIUM ION' BA 4 'CHLORIDE ION' CL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3S80 _pdbx_initial_refinement_model.details 'PDB ENTRY 3S80' #