0.018330 0.000000 0.005075 -0.000000 0.012615 0.000000 0.000000 -0.000000 0.018895 0.000000 0.000000 0.000000 Koag, M.C. Min, K. Monzingo, A.F. Lee, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.000 105.480 90.000 54.554 79.271 54.915 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H13 Br N5 O7 P 426.117 n 8-BROMO-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 R C Y 82 N N Y 83 N C Y 84 N N Y 85 N C Y 86 N C N 87 N N N 88 N C N 89 N N N 90 N N N 91 N C N 92 N O N 93 N C N 94 S C N 95 N O N 96 N O N 97 N BR N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N N N 112 R C N 113 N C N 114 N O N 115 N C N 116 N S N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N O N 126 N P N 127 N O N 128 N O N 129 N O N 130 N C N 131 R C N 132 N O N 133 S C N 134 N O N 135 N C N 136 R C Y 137 N N Y 138 N C Y 139 N N Y 140 N C Y 141 N C N 142 N N Y 143 N N Y 144 N C Y 145 N N Y 146 N C N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N O N 162 N P N 163 N O N 164 N O N 165 N O N 166 N C N 167 R C N 168 N O N 169 S C N 170 N O N 171 N C N 172 R C N 173 N N N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N C N 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C Y 207 N N Y 208 N C Y 209 N N Y 210 N C N 211 N C N 212 N O N 213 N N N 214 N C N 215 N N N 216 N N Y 217 N C N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N O N 233 N P N 234 N O N 235 N O N 236 N O N 237 N C N 238 R C N 239 N O N 240 S C N 241 N O N 242 N C N 243 R C N 244 N N N 245 N C N 246 N O N 247 N N N 248 N C N 249 N O N 250 N C N 251 N C N 252 N C N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 N C N 273 N C N 274 N C N 275 N O N 276 N N N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C N 293 N C N 294 N C N 295 N O N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 N C N 309 N C N 310 N O N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C Y 322 N C Y 323 N N Y 324 N C Y 325 N C Y 326 N N N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N O N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 S C N 346 N C N 347 N C N 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 N C N 368 N C N 369 N C N 370 N C N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N N N 386 S C N 387 N C N 388 N O N 389 N C N 390 N C N 391 N C N 392 N C N 393 N N N 394 N O N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N N N 411 S C N 412 N C N 413 N O N 414 N C N 415 N C N 416 N S N 417 N C N 418 N O N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N NA N 431 N N N 432 S C N 433 N C N 434 N O N 435 N C Y 436 N C Y 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N C N 442 N O N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N N N 455 S C N 456 N C N 457 N O N 458 N C N 459 N C N 460 N C N 461 N O N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N N N 472 S C N 473 N C N 474 N O N 475 N C N 476 N O N 477 N O N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N N N 486 S C N 487 N C N 488 N O N 489 R C N 490 N O N 491 N C N 492 N O N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N N N 503 S C N 504 N C N 505 N O N 506 N C Y 507 N C Y 508 N C Y 509 N C Y 510 N N Y 511 N C Y 512 N C Y 513 N C Y 514 N C Y 515 N C N 516 N O N 517 N H N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N N N 530 S C N 531 N C N 532 N O N 533 N C Y 534 N C Y 535 N C Y 536 N C Y 537 N C Y 538 N C Y 539 N C N 540 N O N 541 N O N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N N N 554 S C N 555 N C N 556 N O N 557 N C N 558 N C N 559 N C N 560 N O N 561 N H N 562 N H N 563 N H N 564 N H N 565 N H N 566 N H N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N doub N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing Y 86 N sing Y 87 N sing Y 88 N doub N 89 N sing Y 90 N sing Y 91 N doub N 92 N sing N 93 N sing N 94 N doub N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing Y 145 N sing Y 146 N sing Y 147 N doub N 148 N sing Y 149 N sing Y 150 N sing Y 151 N doub N 152 N sing Y 153 N doub N 154 N sing N 155 N sing Y 156 N sing Y 157 N doub N 158 N sing Y 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing Y 218 N sing Y 219 N sing Y 220 N doub N 221 N sing Y 222 N sing N 223 N sing Y 224 N doub N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing Y 328 N sing Y 329 N doub Y 330 N doub N 331 N sing Y 332 N sing N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N doub N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N doub N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N doub N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N doub N 432 N sing N 433 N sing N 434 N sing N 435 N sing Y 436 N doub Y 437 N sing Y 438 N sing N 439 N sing Y 440 N doub N 441 N sing Y 442 N doub N 443 N sing Y 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N doub N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N doub N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N doub N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N doub N 501 N sing N 502 N sing N 503 N sing N 504 N sing Y 505 N doub Y 506 N sing Y 507 N sing N 508 N sing Y 509 N doub Y 510 N sing Y 511 N sing N 512 N sing Y 513 N sing Y 514 N doub N 515 N sing Y 516 N doub N 517 N sing Y 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N doub N 529 N sing N 530 N sing N 531 N sing N 532 N sing Y 533 N doub Y 534 N sing Y 535 N sing N 536 N sing Y 537 N doub N 538 N sing Y 539 N doub N 540 N sing Y 541 N sing N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N doub N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 289 6289 6298 10.1074/jbc.M113.537803 24425881 Structural basis for promutagenicity of 8-halogenated Guanine. 2014 10.2210/pdb4m2y/pdb pdb_00004m2y 100 1 IMAGE PLATE 2013-03-06 RIGAKU RAXIS IV++ Varimax focusing mirror SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU MICROMAX-007 HF 37081.309 DNA polymerase beta 2.7.7.7, 4.2.99.- 1 man polymer 4923.040 template DNA strand 1 syn polymer 3085.029 up-primer 1 syn polymer 1536.035 down-primer 1 syn polymer 22.990 SODIUM ION 2 syn non-polymer 18.015 water 72 nat water no no LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQ DDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVD SEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREP KDRSE LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQ DDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVD SEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREP KDRSE A polypeptide(L) no yes (DC)(DC)(DG)(DA)(DC)(BGM)(DT)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC) CCGACGTCGCATCAGC T polydeoxyribonucleotide no no (DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DA) GCTGATGCGA P polydeoxyribonucleotide no no (DG)(DT)(DC)(DG)(DG) GTCGG D polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample POLB 9606 Homo sapiens 562 Escherichia coli 1 2.45 49.88 VAPOR DIFFUSION, SITTING DROP 7.5 14-23% PEG 3340, 350mM sodium acetate in 50 mM imidazole, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K 295 -9.420 1 19 T 1 D 5 1.797 T_DC1:DG5_D 1 -8.714 0.474 0.649 -0.137 -1.408 1 19 T 2 D 4 2.157 T_DC2:DG4_D 2 -6.837 0.402 -0.101 -0.193 -1.426 1 19 T 3 D 3 -2.612 T_DG3:DC3_D 3 -9.319 -0.084 -0.069 -0.046 1.987 1 20 T 4 D 2 -3.549 T_DA4:DT2_D 4 -0.878 -0.052 0.053 -0.099 14.493 1 19 T 5 D 1 -1.319 T_DC5:DG1_D 5 7.290 0.336 -0.173 -0.159 -14.559 1 20 T 7 P 10 1.857 T_DT7:DA10_P 6 -8.656 -0.550 -0.287 -0.219 3.255 1 19 T 8 P 9 -0.010 T_DC8:DG9_P 7 -12.282 0.070 -0.377 -0.122 -0.459 1 19 T 9 P 8 -2.961 T_DG9:DC8_P 8 -6.749 -0.233 0.110 -0.235 5.856 1 19 T 10 P 7 -2.097 T_DC10:DG7_P 9 -11.955 0.182 0.067 -0.074 5.352 1 20 T 11 P 6 -1.304 T_DA11:DT6_P 10 -14.045 -0.286 0.426 -0.116 9.763 1 20 T 12 P 5 2.495 T_DT12:DA5_P 11 -10.952 0.178 -0.141 0.036 2.333 1 19 T 13 P 4 3.761 T_DC13:DG4_P 12 -14.251 0.413 -0.174 0.055 -2.787 1 20 T 14 P 3 -3.459 T_DA14:DT3_P 13 -8.641 0.111 0.047 -0.027 1.995 1 19 T 15 P 2 -2.966 T_DG15:DC2_P 14 -7.101 -0.305 0.135 -0.234 5.615 1 19 T 16 P 1 2.034 T_DC16:DG1_P 15 -12.016 -0.082 0.059 -0.229 3.183 37.170 T T 1 2 -2.760 D D 5 4 3.077 -1.744 1.011 0.842 TT_DC1DC2:DG4DG5_DD 1 8.525 -13.490 36.172 1.547 -0.483 3.457 33.487 T T 2 3 19.247 D D 4 3 3.307 10.874 -1.017 0.715 TT_DC2DG3:DC3DG4_DD 2 -3.968 7.025 31.477 -0.673 1.067 3.150 35.858 T T 3 4 0.902 D D 3 2 3.120 0.554 -0.466 -0.074 TT_DG3DA4:DT2DC3_DD 3 -3.932 6.399 35.644 -0.196 0.215 3.062 28.899 T T 4 5 4.388 D D 2 1 3.086 2.188 0.680 -0.455 TT_DA4DC5:DG1DT2_DD 4 0.846 -1.697 28.806 -1.369 -1.185 2.973 31.827 T T 7 8 5.519 P P 10 9 2.991 3.021 -0.247 0.087 TT_DT7DC8:DG9DA10_PP 5 1.463 -2.673 31.654 -0.345 0.695 3.625 37.787 T T 8 9 16.716 P P 9 8 3.444 10.608 -1.064 0.617 TT_DC8DG9:DC8DG9_PP 6 -8.095 12.755 35.434 -0.577 0.477 3.128 30.709 T T 9 10 5.846 P P 8 7 3.171 3.091 -0.247 -0.299 TT_DG9DC10:DG7DC8_PP 7 -0.251 0.475 30.556 -1.150 0.418 3.070 35.977 T T 10 11 12.173 P P 7 6 3.142 7.463 -0.010 -0.019 TT_DC10DA11:DT6DG7_PP 8 -2.076 3.386 35.160 -1.052 -0.268 3.293 33.506 T T 11 12 -5.607 P P 6 5 3.213 -3.216 0.580 -0.459 TT_DA11DT12:DA5DT6_PP 9 5.170 -9.015 32.964 -0.266 -0.154 3.293 43.524 T T 12 13 -1.734 P P 5 4 3.275 -1.285 0.357 -0.088 TT_DT12DC13:DG4DA5_PP 10 3.132 -4.228 43.399 0.007 -0.178 3.367 33.418 T T 13 14 13.163 P P 4 3 3.413 7.507 -0.402 0.136 TT_DC13DA14:DT3DG4_PP 11 -0.673 1.180 32.580 -1.068 0.583 3.083 30.762 T T 14 15 3.689 P P 3 2 3.133 1.954 0.175 -0.384 TT_DA14DG15:DC2DT3_PP 12 -2.205 4.164 30.623 -1.087 -0.740 3.089 34.870 T T 15 16 7.379 P P 2 1 3.177 4.411 0.651 -0.591 TT_DG15DC16:DG1DC2_PP 13 0.504 -0.843 34.595 -1.630 -1.013 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Database references Data collection Database references Derived calculations Refinement description 1 0 2014-01-22 1 1 2014-02-12 1 2 2014-03-19 1 3 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id open conformation of pol B pol B complexed with gapped DNA at n position RCSB Y RCSB 2013-08-05 REL REL NA SODIUM ION HOH water this is a synthetic sequence. sample this is complementary sequence upstream of gap. sample this is complementary sequence downstream of gap. sample 3ISB PDB ENTRY 3ISB PDB experimental model NA 341 5 NA NA 401 A NA 342 5 NA NA 402 A HOH 1 6 HOH HOH 501 A HOH 2 6 HOH HOH 502 A HOH 4 6 HOH HOH 503 A HOH 5 6 HOH HOH 504 A HOH 8 6 HOH HOH 505 A HOH 9 6 HOH HOH 506 A HOH 10 6 HOH HOH 507 A HOH 11 6 HOH HOH 508 A HOH 12 6 HOH HOH 509 A HOH 13 6 HOH HOH 510 A HOH 14 6 HOH HOH 511 A HOH 17 6 HOH HOH 512 A HOH 18 6 HOH HOH 513 A HOH 19 6 HOH HOH 514 A HOH 20 6 HOH HOH 515 A HOH 21 6 HOH HOH 516 A HOH 22 6 HOH HOH 517 A HOH 23 6 HOH HOH 518 A HOH 24 6 HOH HOH 519 A HOH 25 6 HOH HOH 520 A HOH 26 6 HOH HOH 521 A HOH 27 6 HOH HOH 522 A HOH 29 6 HOH HOH 523 A HOH 30 6 HOH HOH 524 A HOH 33 6 HOH HOH 525 A HOH 36 6 HOH HOH 526 A HOH 37 6 HOH HOH 527 A HOH 39 6 HOH HOH 528 A HOH 42 6 HOH HOH 529 A HOH 43 6 HOH HOH 530 A HOH 44 6 HOH HOH 531 A HOH 45 6 HOH HOH 532 A HOH 47 6 HOH HOH 533 A HOH 48 6 HOH HOH 534 A HOH 49 6 HOH HOH 535 A HOH 50 6 HOH HOH 536 A HOH 53 6 HOH HOH 537 A HOH 56 6 HOH HOH 538 A HOH 57 6 HOH HOH 539 A HOH 61 6 HOH HOH 540 A HOH 63 6 HOH HOH 541 A HOH 67 6 HOH HOH 542 A HOH 68 6 HOH HOH 543 A HOH 69 6 HOH HOH 544 A HOH 71 6 HOH HOH 545 A HOH 72 6 HOH HOH 546 A HOH 73 6 HOH HOH 547 A HOH 74 6 HOH HOH 548 A HOH 75 6 HOH HOH 549 A HOH 77 6 HOH HOH 550 A HOH 78 6 HOH HOH 551 A HOH 79 6 HOH HOH 552 A HOH 81 6 HOH HOH 553 A HOH 3 6 HOH HOH 554 A HOH 54 6 HOH HOH 555 A HOH 6 6 HOH HOH 101 T HOH 16 6 HOH HOH 102 T HOH 28 6 HOH HOH 103 T HOH 32 6 HOH HOH 104 T HOH 34 6 HOH HOH 105 T HOH 35 6 HOH HOH 106 T HOH 38 6 HOH HOH 107 T HOH 41 6 HOH HOH 108 T HOH 64 6 HOH HOH 109 T HOH 65 6 HOH HOH 110 T HOH 7 6 HOH HOH 101 P HOH 15 6 HOH HOH 102 P HOH 31 6 HOH HOH 103 P HOH 40 6 HOH HOH 104 P HOH 46 6 HOH HOH 105 P HOH 58 6 HOH HOH 101 D HOH 59 6 HOH HOH 102 D LEU 11 n 1 LEU 11 A ASN 12 n 2 ASN 12 A GLY 13 n 3 GLY 13 A GLY 14 n 4 GLY 14 A ILE 15 n 5 ILE 15 A THR 16 n 6 THR 16 A ASP 17 n 7 ASP 17 A MET 18 n 8 MET 18 A LEU 19 n 9 LEU 19 A THR 20 n 10 THR 20 A GLU 21 n 11 GLU 21 A LEU 22 n 12 LEU 22 A ALA 23 n 13 ALA 23 A ASN 24 n 14 ASN 24 A PHE 25 n 15 PHE 25 A GLU 26 n 16 GLU 26 A LYS 27 n 17 LYS 27 A ASN 28 n 18 ASN 28 A VAL 29 n 19 VAL 29 A SER 30 n 20 SER 30 A GLN 31 n 21 GLN 31 A ALA 32 n 22 ALA 32 A ILE 33 n 23 ILE 33 A HIS 34 n 24 HIS 34 A LYS 35 n 25 LYS 35 A TYR 36 n 26 TYR 36 A ASN 37 n 27 ASN 37 A ALA 38 n 28 ALA 38 A TYR 39 n 29 TYR 39 A ARG 40 n 30 ARG 40 A LYS 41 n 31 LYS 41 A ALA 42 n 32 ALA 42 A ALA 43 n 33 ALA 43 A SER 44 n 34 SER 44 A VAL 45 n 35 VAL 45 A ILE 46 n 36 ILE 46 A ALA 47 n 37 ALA 47 A LYS 48 n 38 LYS 48 A TYR 49 n 39 TYR 49 A PRO 50 n 40 PRO 50 A HIS 51 n 41 HIS 51 A LYS 52 n 42 LYS 52 A ILE 53 n 43 ILE 53 A LYS 54 n 44 LYS 54 A SER 55 n 45 SER 55 A GLY 56 n 46 GLY 56 A ALA 57 n 47 ALA 57 A GLU 58 n 48 GLU 58 A ALA 59 n 49 ALA 59 A LYS 60 n 50 LYS 60 A LYS 61 n 51 LYS 61 A LEU 62 n 52 LEU 62 A PRO 63 n 53 PRO 63 A GLY 64 n 54 GLY 64 A VAL 65 n 55 VAL 65 A GLY 66 n 56 GLY 66 A THR 67 n 57 THR 67 A LYS 68 n 58 LYS 68 A ILE 69 n 59 ILE 69 A ALA 70 n 60 ALA 70 A GLU 71 n 61 GLU 71 A LYS 72 n 62 LYS 72 A ILE 73 n 63 ILE 73 A ASP 74 n 64 ASP 74 A GLU 75 n 65 GLU 75 A PHE 76 n 66 PHE 76 A LEU 77 n 67 LEU 77 A ALA 78 n 68 ALA 78 A THR 79 n 69 THR 79 A GLY 80 n 70 GLY 80 A LYS 81 n 71 LYS 81 A LEU 82 n 72 LEU 82 A ARG 83 n 73 ARG 83 A LYS 84 n 74 LYS 84 A LEU 85 n 75 LEU 85 A GLU 86 n 76 GLU 86 A LYS 87 n 77 LYS 87 A ILE 88 n 78 ILE 88 A ARG 89 n 79 ARG 89 A GLN 90 n 80 GLN 90 A ASP 91 n 81 ASP 91 A ASP 92 n 82 ASP 92 A THR 93 n 83 THR 93 A SER 94 n 84 SER 94 A SER 95 n 85 SER 95 A SER 96 n 86 SER 96 A ILE 97 n 87 ILE 97 A ASN 98 n 88 ASN 98 A PHE 99 n 89 PHE 99 A LEU 100 n 90 LEU 100 A THR 101 n 91 THR 101 A ARG 102 n 92 ARG 102 A VAL 103 n 93 VAL 103 A SER 104 n 94 SER 104 A GLY 105 n 95 GLY 105 A ILE 106 n 96 ILE 106 A GLY 107 n 97 GLY 107 A PRO 108 n 98 PRO 108 A SER 109 n 99 SER 109 A ALA 110 n 100 ALA 110 A ALA 111 n 101 ALA 111 A ARG 112 n 102 ARG 112 A LYS 113 n 103 LYS 113 A PHE 114 n 104 PHE 114 A VAL 115 n 105 VAL 115 A ASP 116 n 106 ASP 116 A GLU 117 n 107 GLU 117 A GLY 118 n 108 GLY 118 A ILE 119 n 109 ILE 119 A LYS 120 n 110 LYS 120 A THR 121 n 111 THR 121 A LEU 122 n 112 LEU 122 A GLU 123 n 113 GLU 123 A ASP 124 n 114 ASP 124 A LEU 125 n 115 LEU 125 A ARG 126 n 116 ARG 126 A LYS 127 n 117 LYS 127 A ASN 128 n 118 ASN 128 A GLU 129 n 119 GLU 129 A ASP 130 n 120 ASP 130 A LYS 131 n 121 LYS 131 A LEU 132 n 122 LEU 132 A ASN 133 n 123 ASN 133 A HIS 134 n 124 HIS 134 A HIS 135 n 125 HIS 135 A GLN 136 n 126 GLN 136 A ARG 137 n 127 ARG 137 A ILE 138 n 128 ILE 138 A GLY 139 n 129 GLY 139 A LEU 140 n 130 LEU 140 A LYS 141 n 131 LYS 141 A TYR 142 n 132 TYR 142 A PHE 143 n 133 PHE 143 A GLY 144 n 134 GLY 144 A ASP 145 n 135 ASP 145 A PHE 146 n 136 PHE 146 A GLU 147 n 137 GLU 147 A LYS 148 n 138 LYS 148 A ARG 149 n 139 ARG 149 A ILE 150 n 140 ILE 150 A PRO 151 n 141 PRO 151 A ARG 152 n 142 ARG 152 A GLU 153 n 143 GLU 153 A GLU 154 n 144 GLU 154 A MET 155 n 145 MET 155 A LEU 156 n 146 LEU 156 A GLN 157 n 147 GLN 157 A MET 158 n 148 MET 158 A GLN 159 n 149 GLN 159 A ASP 160 n 150 ASP 160 A ILE 161 n 151 ILE 161 A VAL 162 n 152 VAL 162 A LEU 163 n 153 LEU 163 A ASN 164 n 154 ASN 164 A GLU 165 n 155 GLU 165 A VAL 166 n 156 VAL 166 A LYS 167 n 157 LYS 167 A LYS 168 n 158 LYS 168 A VAL 169 n 159 VAL 169 A ASP 170 n 160 ASP 170 A SER 171 n 161 SER 171 A GLU 172 n 162 GLU 172 A TYR 173 n 163 TYR 173 A ILE 174 n 164 ILE 174 A ALA 175 n 165 ALA 175 A THR 176 n 166 THR 176 A VAL 177 n 167 VAL 177 A CYS 178 n 168 CYS 178 A GLY 179 n 169 GLY 179 A SER 180 n 170 SER 180 A PHE 181 n 171 PHE 181 A ARG 182 n 172 ARG 182 A ARG 183 n 173 ARG 183 A GLY 184 n 174 GLY 184 A ALA 185 n 175 ALA 185 A GLU 186 n 176 GLU 186 A SER 187 n 177 SER 187 A SER 188 n 178 SER 188 A GLY 189 n 179 GLY 189 A ASP 190 n 180 ASP 190 A MET 191 n 181 MET 191 A ASP 192 n 182 ASP 192 A VAL 193 n 183 VAL 193 A LEU 194 n 184 LEU 194 A LEU 195 n 185 LEU 195 A THR 196 n 186 THR 196 A HIS 197 n 187 HIS 197 A PRO 198 n 188 PRO 198 A SER 199 n 189 SER 199 A PHE 200 n 190 PHE 200 A THR 201 n 191 THR 201 A SER 202 n 192 SER 202 A GLU 203 n 193 GLU 203 A SER 204 n 194 SER 204 A n 195 205 A n 196 206 A n 197 207 A n 198 208 A LYS 209 n 199 LYS 209 A LEU 210 n 200 LEU 210 A LEU 211 n 201 LEU 211 A HIS 212 n 202 HIS 212 A GLN 213 n 203 GLN 213 A VAL 214 n 204 VAL 214 A VAL 215 n 205 VAL 215 A GLU 216 n 206 GLU 216 A GLN 217 n 207 GLN 217 A LEU 218 n 208 LEU 218 A GLN 219 n 209 GLN 219 A LYS 220 n 210 LYS 220 A VAL 221 n 211 VAL 221 A HIS 222 n 212 HIS 222 A PHE 223 n 213 PHE 223 A ILE 224 n 214 ILE 224 A THR 225 n 215 THR 225 A ASP 226 n 216 ASP 226 A THR 227 n 217 THR 227 A LEU 228 n 218 LEU 228 A SER 229 n 219 SER 229 A LYS 230 n 220 LYS 230 A GLY 231 n 221 GLY 231 A GLU 232 n 222 GLU 232 A THR 233 n 223 THR 233 A LYS 234 n 224 LYS 234 A PHE 235 n 225 PHE 235 A MET 236 n 226 MET 236 A GLY 237 n 227 GLY 237 A VAL 238 n 228 VAL 238 A CYS 239 n 229 CYS 239 A GLN 240 n 230 GLN 240 A LEU 241 n 231 LEU 241 A PRO 242 n 232 PRO 242 A SER 243 n 233 SER 243 A n 234 244 A n 235 245 A ASP 246 n 236 ASP 246 A GLU 247 n 237 GLU 247 A LYS 248 n 238 LYS 248 A GLU 249 n 239 GLU 249 A TYR 250 n 240 TYR 250 A PRO 251 n 241 PRO 251 A HIS 252 n 242 HIS 252 A ARG 253 n 243 ARG 253 A ARG 254 n 244 ARG 254 A ILE 255 n 245 ILE 255 A ASP 256 n 246 ASP 256 A ILE 257 n 247 ILE 257 A ARG 258 n 248 ARG 258 A LEU 259 n 249 LEU 259 A ILE 260 n 250 ILE 260 A PRO 261 n 251 PRO 261 A LYS 262 n 252 LYS 262 A ASP 263 n 253 ASP 263 A GLN 264 n 254 GLN 264 A TYR 265 n 255 TYR 265 A TYR 266 n 256 TYR 266 A CYS 267 n 257 CYS 267 A GLY 268 n 258 GLY 268 A VAL 269 n 259 VAL 269 A LEU 270 n 260 LEU 270 A TYR 271 n 261 TYR 271 A PHE 272 n 262 PHE 272 A THR 273 n 263 THR 273 A GLY 274 n 264 GLY 274 A SER 275 n 265 SER 275 A ASP 276 n 266 ASP 276 A ILE 277 n 267 ILE 277 A PHE 278 n 268 PHE 278 A ASN 279 n 269 ASN 279 A LYS 280 n 270 LYS 280 A ASN 281 n 271 ASN 281 A MET 282 n 272 MET 282 A ARG 283 n 273 ARG 283 A ALA 284 n 274 ALA 284 A HIS 285 n 275 HIS 285 A ALA 286 n 276 ALA 286 A LEU 287 n 277 LEU 287 A GLU 288 n 278 GLU 288 A LYS 289 n 279 LYS 289 A GLY 290 n 280 GLY 290 A PHE 291 n 281 PHE 291 A THR 292 n 282 THR 292 A ILE 293 n 283 ILE 293 A ASN 294 n 284 ASN 294 A GLU 295 n 285 GLU 295 A TYR 296 n 286 TYR 296 A THR 297 n 287 THR 297 A ILE 298 n 288 ILE 298 A ARG 299 n 289 ARG 299 A PRO 300 n 290 PRO 300 A LEU 301 n 291 LEU 301 A GLY 302 n 292 GLY 302 A VAL 303 n 293 VAL 303 A THR 304 n 294 THR 304 A GLY 305 n 295 GLY 305 A VAL 306 n 296 VAL 306 A ALA 307 n 297 ALA 307 A GLY 308 n 298 GLY 308 A GLU 309 n 299 GLU 309 A PRO 310 n 300 PRO 310 A LEU 311 n 301 LEU 311 A PRO 312 n 302 PRO 312 A VAL 313 n 303 VAL 313 A ASP 314 n 304 ASP 314 A SER 315 n 305 SER 315 A GLU 316 n 306 GLU 316 A LYS 317 n 307 LYS 317 A ASP 318 n 308 ASP 318 A ILE 319 n 309 ILE 319 A PHE 320 n 310 PHE 320 A ASP 321 n 311 ASP 321 A TYR 322 n 312 TYR 322 A ILE 323 n 313 ILE 323 A GLN 324 n 314 GLN 324 A TRP 325 n 315 TRP 325 A LYS 326 n 316 LYS 326 A TYR 327 n 317 TYR 327 A ARG 328 n 318 ARG 328 A GLU 329 n 319 GLU 329 A PRO 330 n 320 PRO 330 A LYS 331 n 321 LYS 331 A ASP 332 n 322 ASP 332 A ARG 333 n 323 ARG 333 A SER 334 n 324 SER 334 A GLU 335 n 325 GLU 335 A DC 1 n 1 DC 1 T DC 2 n 2 DC 2 T DG 3 n 3 DG 3 T DA 4 n 4 DA 4 T DC 5 n 5 DC 5 T BGM 6 n 6 BGM 6 T DT 7 n 7 DT 7 T DC 8 n 8 DC 8 T DG 9 n 9 DG 9 T DC 10 n 10 DC 10 T DA 11 n 11 DA 11 T DT 12 n 12 DT 12 T DC 13 n 13 DC 13 T DA 14 n 14 DA 14 T DG 15 n 15 DG 15 T DC 16 n 16 DC 16 T DG 1 n 1 DG 1 P DC 2 n 2 DC 2 P DT 3 n 3 DT 3 P DG 4 n 4 DG 4 P DA 5 n 5 DA 5 P DT 6 n 6 DT 6 P DG 7 n 7 DG 7 P DC 8 n 8 DC 8 P DG 9 n 9 DG 9 P DA 10 n 10 DA 10 P DG 1 n 1 DG 1 D DT 2 n 2 DT 2 D DC 3 n 3 DC 3 D DG 4 n 4 DG 4 D DG 5 n 5 DG 5 D author_and_software_defined_assembly PISA 4 tetrameric 4380 -44 20990 A LYS 60 A O LYS 50 1_555 A NA 402 F NA NA 1_555 A LEU 62 A O LEU 52 1_555 85.3 A LYS 60 A O LYS 50 1_555 A NA 402 F NA NA 1_555 A VAL 65 A O VAL 55 1_555 90.3 A LEU 62 A O LEU 52 1_555 A NA 402 F NA NA 1_555 A VAL 65 A O VAL 55 1_555 93.0 A LYS 60 A O LYS 50 1_555 A NA 402 F NA NA 1_555 D DC 3 D OP1 DC 3 1_555 173.4 A LEU 62 A O LEU 52 1_555 A NA 402 F NA NA 1_555 D DC 3 D OP1 DC 3 1_555 90.5 A VAL 65 A O VAL 55 1_555 A NA 402 F NA NA 1_555 D DC 3 D OP1 DC 3 1_555 84.8 A THR 101 A O THR 91 1_555 A NA 401 E NA NA 1_555 A VAL 103 A O VAL 93 1_555 93.6 A THR 101 A O THR 91 1_555 A NA 401 E NA NA 1_555 A ILE 106 A O ILE 96 1_555 93.1 A VAL 103 A O VAL 93 1_555 A NA 401 E NA NA 1_555 A ILE 106 A O ILE 96 1_555 89.0 A THR 101 A O THR 91 1_555 A NA 401 E NA NA 1_555 P DG 9 C OP1 DG 9 1_555 162.8 A VAL 103 A O VAL 93 1_555 A NA 401 E NA NA 1_555 P DG 9 C OP1 DG 9 1_555 101.9 A ILE 106 A O ILE 96 1_555 A NA 401 E NA NA 1_555 P DG 9 C OP1 DG 9 1_555 94.6 A THR 101 A O THR 91 1_555 A NA 401 E NA NA 1_555 P HOH 101 I O HOH 1_555 91.3 A VAL 103 A O VAL 93 1_555 A NA 401 E NA NA 1_555 P HOH 101 I O HOH 1_555 91.2 A ILE 106 A O ILE 96 1_555 A NA 401 E NA NA 1_555 P HOH 101 I O HOH 1_555 175.5 P DG 9 C OP1 DG 9 1_555 A NA 401 E NA NA 1_555 P HOH 101 I O HOH 1_555 81.0 T BGM 6 B BGM 6 DG 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 150 A N ILE 140 A O SER 188 A O SER 178 A N THR 176 A N THR 166 A O LEU 194 A O LEU 184 A N LEU 195 A N LEU 185 A O ARG 258 A O ARG 248 A O ARG 253 A O ARG 243 A N CYS 239 A N CYS 229 A O MET 236 A O MET 226 A N SER 229 A N SER 219 A N THR 292 A N THR 282 A O ARG 299 A O ARG 289 1 A CG GLU 203 A CG GLU 193 1 Y 1 A CD GLU 203 A CD GLU 193 1 Y 1 A OE1 GLU 203 A OE1 GLU 193 1 Y 1 A OE2 GLU 203 A OE2 GLU 193 1 Y 1 A CG LYS 209 A CG LYS 199 1 Y 1 A CD LYS 209 A CD LYS 199 1 Y 1 A CE LYS 209 A CE LYS 199 1 Y 1 A NZ LYS 209 A NZ LYS 199 1 Y 1 A CG ASP 246 A CG ASP 236 1 Y 1 A OD1 ASP 246 A OD1 ASP 236 1 Y 1 A OD2 ASP 246 A OD2 ASP 236 1 Y 1 A CG GLU 247 A CG GLU 237 1 Y 1 A CD GLU 247 A CD GLU 237 1 Y 1 A OE1 GLU 247 A OE1 GLU 237 1 Y 1 A OE2 GLU 247 A OE2 GLU 237 1 Y 1 A THR 205 A THR 195 1 Y 1 A LYS 206 A LYS 196 1 Y 1 A GLN 207 A GLN 197 1 Y 1 A PRO 208 A PRO 198 1 Y 1 A LYS 244 A LYS 234 1 Y 1 A ASN 245 A ASN 235 1 Y 1 8.23 1.10 109.80 118.03 T T T C5' C4' O4' DC DC DC 1 1 1 N 1 -7.45 0.90 105.70 98.25 P P P O5' P OP1 DA DA DA 5 5 5 N 1 D D P OP3 DG DG 1 1 -0.100 0.012 1.607 1.507 N 1 A PRO 50 -88.34 40.22 1 A CYS 178 -107.52 -144.04 1 A GLU 247 -38.57 153.84 1 A ASN 294 -125.96 -166.78 67.500 28.3099 9.980 0.8100 -0.0000 0.4400 -0.4900 -0.0000 -0.3800 0.9260 0.8850 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY 0.2694 0.2120 0.2151 2.2700 19.8300 1011 19695 5.1000 94.2700 1.000 1.000 7.5500 0.1870 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.3780 0.2650 0.8000 0.8000 1.2000 PDB ENTRY 3ISB MAXIMUM LIKELIHOOD MASK 2.2700 19.8300 72 3250 2 633 2543 0.012 0.018 3297 0.001 0.020 2864 1.651 1.794 4568 1.148 3.000 6629 5.830 5.000 316 37.116 24.000 120 16.947 15.000 489 16.637 15.000 18 0.092 0.200 474 0.008 0.020 3260 0.001 0.020 741 1.756 2.680 1273 1.745 2.679 1272 2.731 4.009 1586 0.3910 0.2750 2.3300 61 1287 1348 20 88.3400 2.27 20 4M2Y 20228 20228 0 1 97.1 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.7.0032 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection StructureStudio data reduction HKL-2000 data scaling HKL-2000 phasing MOLREP Structure of human DNA polymerase beta complexed with 8-BrG as the template base in a 1-nucleotide gapped DNA 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N 6 N N 6 N N 6 N N A ASN 12 A ASN 2 HELX_P A VAL 29 A VAL 19 1 1 18 A ALA 32 A ALA 22 HELX_P A LYS 48 A LYS 38 1 2 17 A SER 55 A SER 45 HELX_P A LYS 61 A LYS 51 1 3 7 A GLY 66 A GLY 56 HELX_P A GLY 80 A GLY 70 1 4 15 A LEU 82 A LEU 72 HELX_P A ASP 91 A ASP 81 1 5 10 A ASP 91 A ASP 81 HELX_P A THR 101 A THR 91 1 6 11 A GLY 107 A GLY 97 HELX_P A GLU 117 A GLU 107 1 7 11 A THR 121 A THR 111 HELX_P A LYS 127 A LYS 117 1 8 7 A ASN 128 A ASN 118 HELX_P A LEU 132 A LEU 122 5 9 5 A ASN 133 A ASN 123 HELX_P A TYR 142 A TYR 132 1 10 10 A TYR 142 A TYR 132 HELX_P A GLU 147 A GLU 137 1 11 6 A ARG 152 A ARG 142 HELX_P A ASP 170 A ASP 160 1 12 19 A CYS 178 A CYS 168 HELX_P A ARG 183 A ARG 173 1 13 6 A LEU 210 A LEU 200 HELX_P A VAL 221 A VAL 211 1 14 12 A PRO 261 A PRO 251 HELX_P A ASP 263 A ASP 253 5 15 3 A GLN 264 A GLN 254 HELX_P A GLY 274 A GLY 264 1 16 11 A SER 275 A SER 265 HELX_P A LYS 289 A LYS 279 1 17 15 A SER 315 A SER 305 HELX_P A ILE 323 A ILE 313 1 18 9 A GLU 329 A GLU 319 HELX_P A ARG 333 A ARG 323 5 19 5 covale 1.623 both T DC 5 B O3' DC 5 1_555 T BGM 6 B P BGM 6 1_555 covale 1.613 both T BGM 6 B O3' BGM 6 1_555 T DT 7 B P DT 7 1_555 metalc 2.284 A LYS 60 A O LYS 50 1_555 A NA 402 F NA NA 1_555 metalc 2.690 A LEU 62 A O LEU 52 1_555 A NA 402 F NA NA 1_555 metalc 2.366 A VAL 65 A O VAL 55 1_555 A NA 402 F NA NA 1_555 metalc 2.262 A THR 101 A O THR 91 1_555 A NA 401 E NA NA 1_555 metalc 2.296 A VAL 103 A O VAL 93 1_555 A NA 401 E NA NA 1_555 metalc 2.292 A ILE 106 A O ILE 96 1_555 A NA 401 E NA NA 1_555 metalc 2.341 A NA 401 E NA NA 1_555 P DG 9 C OP1 DG 9 1_555 metalc 2.542 A NA 401 E NA NA 1_555 P HOH 101 I O HOH 1_555 metalc 2.621 A NA 402 F NA NA 1_555 D DC 3 D OP1 DC 3 1_555 hydrog WATSON-CRICK T DC 1 B N3 DC 1 1_555 D DG 5 D N1 DG 5 1_555 hydrog WATSON-CRICK T DC 1 B N4 DC 1 1_555 D DG 5 D O6 DG 5 1_555 hydrog WATSON-CRICK T DC 1 B O2 DC 1 1_555 D DG 5 D N2 DG 5 1_555 hydrog WATSON-CRICK T DC 2 B N3 DC 2 1_555 D DG 4 D N1 DG 4 1_555 hydrog WATSON-CRICK T DC 2 B N4 DC 2 1_555 D DG 4 D O6 DG 4 1_555 hydrog WATSON-CRICK T DC 2 B O2 DC 2 1_555 D DG 4 D N2 DG 4 1_555 hydrog WATSON-CRICK T DG 3 B N1 DG 3 1_555 D DC 3 D N3 DC 3 1_555 hydrog WATSON-CRICK T DG 3 B N2 DG 3 1_555 D DC 3 D O2 DC 3 1_555 hydrog WATSON-CRICK T DG 3 B O6 DG 3 1_555 D DC 3 D N4 DC 3 1_555 hydrog WATSON-CRICK T DA 4 B N1 DA 4 1_555 D DT 2 D N3 DT 2 1_555 hydrog WATSON-CRICK T DA 4 B N6 DA 4 1_555 D DT 2 D O4 DT 2 1_555 hydrog WATSON-CRICK T DC 5 B N3 DC 5 1_555 D DG 1 D N1 DG 1 1_555 hydrog WATSON-CRICK T DC 5 B N4 DC 5 1_555 D DG 1 D O6 DG 1 1_555 hydrog WATSON-CRICK T DC 5 B O2 DC 5 1_555 D DG 1 D N2 DG 1 1_555 hydrog WATSON-CRICK T DT 7 B N3 DT 7 1_555 P DA 10 C N1 DA 10 1_555 hydrog WATSON-CRICK T DT 7 B O4 DT 7 1_555 P DA 10 C N6 DA 10 1_555 hydrog WATSON-CRICK T DC 8 B N3 DC 8 1_555 P DG 9 C N1 DG 9 1_555 hydrog WATSON-CRICK T DC 8 B N4 DC 8 1_555 P DG 9 C O6 DG 9 1_555 hydrog WATSON-CRICK T DC 8 B O2 DC 8 1_555 P DG 9 C N2 DG 9 1_555 hydrog WATSON-CRICK T DG 9 B N1 DG 9 1_555 P DC 8 C N3 DC 8 1_555 hydrog WATSON-CRICK T DG 9 B N2 DG 9 1_555 P DC 8 C O2 DC 8 1_555 hydrog WATSON-CRICK T DG 9 B O6 DG 9 1_555 P DC 8 C N4 DC 8 1_555 hydrog WATSON-CRICK T DC 10 B N3 DC 10 1_555 P DG 7 C N1 DG 7 1_555 hydrog WATSON-CRICK T DC 10 B N4 DC 10 1_555 P DG 7 C O6 DG 7 1_555 hydrog WATSON-CRICK T DC 10 B O2 DC 10 1_555 P DG 7 C N2 DG 7 1_555 hydrog WATSON-CRICK T DA 11 B N1 DA 11 1_555 P DT 6 C N3 DT 6 1_555 hydrog WATSON-CRICK T DA 11 B N6 DA 11 1_555 P DT 6 C O4 DT 6 1_555 hydrog WATSON-CRICK T DT 12 B N3 DT 12 1_555 P DA 5 C N1 DA 5 1_555 hydrog WATSON-CRICK T DT 12 B O4 DT 12 1_555 P DA 5 C N6 DA 5 1_555 hydrog WATSON-CRICK T DC 13 B N3 DC 13 1_555 P DG 4 C N1 DG 4 1_555 hydrog WATSON-CRICK T DC 13 B N4 DC 13 1_555 P DG 4 C O6 DG 4 1_555 hydrog WATSON-CRICK T DC 13 B O2 DC 13 1_555 P DG 4 C N2 DG 4 1_555 hydrog WATSON-CRICK T DA 14 B N1 DA 14 1_555 P DT 3 C N3 DT 3 1_555 hydrog WATSON-CRICK T DA 14 B N6 DA 14 1_555 P DT 3 C O4 DT 3 1_555 hydrog WATSON-CRICK T DG 15 B N1 DG 15 1_555 P DC 2 C N3 DC 2 1_555 hydrog WATSON-CRICK T DG 15 B N2 DG 15 1_555 P DC 2 C O2 DC 2 1_555 hydrog WATSON-CRICK T DG 15 B O6 DG 15 1_555 P DC 2 C N4 DC 2 1_555 hydrog WATSON-CRICK T DC 16 B N3 DC 16 1_555 P DG 1 C N1 DG 1 1_555 hydrog WATSON-CRICK T DC 16 B N4 DC 16 1_555 P DG 1 C O6 DG 1 1_555 hydrog WATSON-CRICK T DC 16 B O2 DC 16 1_555 P DG 1 C N2 DG 1 1_555 TRANSFERASE/DNA promutagenic 8-halogenated G insertion, polymerase -DNA complex, base excision repair, TRANSFERASE-DNA complex A GLY 274 A GLY 264 1 A SER 275 A SER 265 -8.48 DPOLB_HUMAN UNP 1 11 P06746 LNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQ DDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVD SEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEY PHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREP KDRSE 4M2Y PDB 2 4M2Y CCGACGTCGCATCAGC 4M2Y PDB 3 4M2Y GCTGATGCGA 4M2Y PDB 4 4M2Y GTCGG 11 335 4M2Y 11 335 P06746 A 1 1 325 1 16 4M2Y 1 16 4M2Y T 2 1 16 1 10 4M2Y 1 10 4M2Y P 3 1 10 1 5 4M2Y 1 5 4M2Y D 4 1 5 2 5 2 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A ILE 150 A ILE 140 A PRO 151 A PRO 141 A SER 187 A SER 177 A SER 188 A SER 178 A ILE 174 A ILE 164 A VAL 177 A VAL 167 A MET 191 A MET 181 A THR 196 A THR 186 A ARG 253 A ARG 243 A LEU 259 A LEU 249 A LYS 234 A LYS 224 A CYS 239 A CYS 229 A ILE 224 A ILE 214 A LYS 230 A LYS 220 A PHE 291 A PHE 281 A ILE 293 A ILE 283 A ILE 298 A ILE 288 A PRO 300 A PRO 290 BINDING SITE FOR RESIDUE NA A 401 A NA 401 Software 5 BINDING SITE FOR RESIDUE NA A 402 A NA 402 Software 4 A THR 101 A THR 91 5 1_555 A VAL 103 A VAL 93 5 1_555 A ILE 106 A ILE 96 5 1_555 P DG 9 C DG 9 5 1_555 P HOH 101 I HOH 5 1_555 A LYS 60 A LYS 50 4 1_555 A LEU 62 A LEU 52 4 1_555 A VAL 65 A VAL 55 4 1_555 D DC 3 D DC 3 4 1_555 4 P 1 21 1