0.012400
0.007159
0.000000
0.000000
0.014319
0.000000
0.000000
0.000000
0.030012
0.00000
0.00000
0.00000
Frankaer, C.G.
Harris, P.
Stahl, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
18
90.00
90.00
120.00
80.643
80.643
33.320
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
70
110
122
10.1107/S1399004713029040
24419384
Towards accurate structural characterization of metal centres in protein crystals: the structures of Ni and Cu T6 bovine insulin derivatives.
2014
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2013-06-14
AGILENT ATLAS CCD
Multilayered mirrors
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
Cu FINE FOCUS
2339.645
Insulin
INSULIN A CHAIN (UNP RESIDUES 85-105)
2
nat
polymer
3403.927
Insulin
INSULIN B CHAIN (UNP RESIDUES 25-54)
2
nat
polymer
63.546
COPPER (II) ION
2
syn
non-polymer
18.015
water
57
nat
water
no
no
GIVEQCCASVCSLYQLENYCN
GIVEQCCASVCSLYQLENYCN
A,C
polypeptide(L)
no
no
FVNQHLCGSHLVEALYLVCGERGFFYTPKA
FVNQHLCGSHLVEALYLVCGERGFFYTPKA
B,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bovine,cow,domestic cattle,domestic cow
sample
9913
Bos taurus
bovine,cow,domestic cattle,domestic cow
sample
9913
Bos taurus
1
1.82
32.24
VAPOR DIFFUSION, HANGING DROP
7.1
0.05M sodium citrate, 15%(v/v) acetone, 7.5mM copper(II)acetate, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
software
diffrn_source
repository
Initial release
Database references
Refinement description
Data collection
1
0
2014-01-15
1
1
2014-02-12
1
2
2017-11-15
1
3
2018-03-07
_software.name
_diffrn_source.source
RCSB
Y
RCSB
2013-08-07
REL
REL
CU
COPPER (II) ION
HOH
water
CU
1
3
CU
CU
101
B
CU
2
3
CU
CU
101
D
HOH
12
4
HOH
HOH
101
A
HOH
16
4
HOH
HOH
102
A
HOH
26
4
HOH
HOH
103
A
HOH
29
4
HOH
HOH
104
A
HOH
56
4
HOH
HOH
105
A
HOH
4
4
HOH
HOH
201
B
HOH
7
4
HOH
HOH
202
B
HOH
8
4
HOH
HOH
203
B
HOH
10
4
HOH
HOH
204
B
HOH
13
4
HOH
HOH
205
B
HOH
14
4
HOH
HOH
206
B
HOH
17
4
HOH
HOH
207
B
HOH
18
4
HOH
HOH
208
B
HOH
23
4
HOH
HOH
209
B
HOH
31
4
HOH
HOH
210
B
HOH
34
4
HOH
HOH
211
B
HOH
39
4
HOH
HOH
212
B
HOH
41
4
HOH
HOH
213
B
HOH
43
4
HOH
HOH
214
B
HOH
44
4
HOH
HOH
215
B
HOH
46
4
HOH
HOH
216
B
HOH
50
4
HOH
HOH
217
B
HOH
51
4
HOH
HOH
218
B
HOH
54
4
HOH
HOH
219
B
HOH
55
4
HOH
HOH
220
B
HOH
2
4
HOH
HOH
101
C
HOH
22
4
HOH
HOH
102
C
HOH
35
4
HOH
HOH
103
C
HOH
36
4
HOH
HOH
104
C
HOH
37
4
HOH
HOH
105
C
HOH
42
4
HOH
HOH
106
C
HOH
48
4
HOH
HOH
107
C
HOH
49
4
HOH
HOH
108
C
HOH
57
4
HOH
HOH
109
C
HOH
1
4
HOH
HOH
201
D
HOH
3
4
HOH
HOH
202
D
HOH
5
4
HOH
HOH
203
D
HOH
6
4
HOH
HOH
204
D
HOH
9
4
HOH
HOH
205
D
HOH
11
4
HOH
HOH
206
D
HOH
15
4
HOH
HOH
207
D
HOH
19
4
HOH
HOH
208
D
HOH
20
4
HOH
HOH
209
D
HOH
21
4
HOH
HOH
210
D
HOH
24
4
HOH
HOH
211
D
HOH
25
4
HOH
HOH
212
D
HOH
27
4
HOH
HOH
213
D
HOH
28
4
HOH
HOH
214
D
HOH
30
4
HOH
HOH
215
D
HOH
32
4
HOH
HOH
216
D
HOH
33
4
HOH
HOH
217
D
HOH
38
4
HOH
HOH
218
D
HOH
40
4
HOH
HOH
219
D
HOH
45
4
HOH
HOH
220
D
HOH
47
4
HOH
HOH
221
D
HOH
52
4
HOH
HOH
222
D
HOH
53
4
HOH
HOH
223
D
GLY
1
n
1
GLY
1
A
ILE
2
n
2
ILE
2
A
VAL
3
n
3
VAL
3
A
GLU
4
n
4
GLU
4
A
GLN
5
n
5
GLN
5
A
CYS
6
n
6
CYS
6
A
CYS
7
n
7
CYS
7
A
ALA
8
n
8
ALA
8
A
SER
9
n
9
SER
9
A
VAL
10
n
10
VAL
10
A
CYS
11
n
11
CYS
11
A
SER
12
n
12
SER
12
A
LEU
13
n
13
LEU
13
A
TYR
14
n
14
TYR
14
A
GLN
15
n
15
GLN
15
A
LEU
16
n
16
LEU
16
A
GLU
17
n
17
GLU
17
A
ASN
18
n
18
ASN
18
A
TYR
19
n
19
TYR
19
A
CYS
20
n
20
CYS
20
A
ASN
21
n
21
ASN
21
A
PHE
1
n
1
PHE
1
B
VAL
2
n
2
VAL
2
B
ASN
3
n
3
ASN
3
B
GLN
4
n
4
GLN
4
B
HIS
5
n
5
HIS
5
B
LEU
6
n
6
LEU
6
B
CYS
7
n
7
CYS
7
B
GLY
8
n
8
GLY
8
B
SER
9
n
9
SER
9
B
HIS
10
n
10
HIS
10
B
LEU
11
n
11
LEU
11
B
VAL
12
n
12
VAL
12
B
GLU
13
n
13
GLU
13
B
ALA
14
n
14
ALA
14
B
LEU
15
n
15
LEU
15
B
TYR
16
n
16
TYR
16
B
LEU
17
n
17
LEU
17
B
VAL
18
n
18
VAL
18
B
CYS
19
n
19
CYS
19
B
GLY
20
n
20
GLY
20
B
GLU
21
n
21
GLU
21
B
ARG
22
n
22
ARG
22
B
GLY
23
n
23
GLY
23
B
PHE
24
n
24
PHE
24
B
PHE
25
n
25
PHE
25
B
TYR
26
n
26
TYR
26
B
THR
27
n
27
THR
27
B
PRO
28
n
28
PRO
28
B
LYS
29
n
29
LYS
29
B
n
30
30
B
GLY
1
n
1
GLY
1
C
ILE
2
n
2
ILE
2
C
VAL
3
n
3
VAL
3
C
GLU
4
n
4
GLU
4
C
GLN
5
n
5
GLN
5
C
CYS
6
n
6
CYS
6
C
CYS
7
n
7
CYS
7
C
ALA
8
n
8
ALA
8
C
SER
9
n
9
SER
9
C
VAL
10
n
10
VAL
10
C
CYS
11
n
11
CYS
11
C
SER
12
n
12
SER
12
C
LEU
13
n
13
LEU
13
C
TYR
14
n
14
TYR
14
C
GLN
15
n
15
GLN
15
C
LEU
16
n
16
LEU
16
C
GLU
17
n
17
GLU
17
C
ASN
18
n
18
ASN
18
C
TYR
19
n
19
TYR
19
C
CYS
20
n
20
CYS
20
C
ASN
21
n
21
ASN
21
C
PHE
1
n
1
PHE
1
D
VAL
2
n
2
VAL
2
D
ASN
3
n
3
ASN
3
D
GLN
4
n
4
GLN
4
D
HIS
5
n
5
HIS
5
D
LEU
6
n
6
LEU
6
D
CYS
7
n
7
CYS
7
D
GLY
8
n
8
GLY
8
D
SER
9
n
9
SER
9
D
HIS
10
n
10
HIS
10
D
LEU
11
n
11
LEU
11
D
VAL
12
n
12
VAL
12
D
GLU
13
n
13
GLU
13
D
ALA
14
n
14
ALA
14
D
LEU
15
n
15
LEU
15
D
TYR
16
n
16
TYR
16
D
LEU
17
n
17
LEU
17
D
VAL
18
n
18
VAL
18
D
CYS
19
n
19
CYS
19
D
GLY
20
n
20
GLY
20
D
GLU
21
n
21
GLU
21
D
ARG
22
n
22
ARG
22
D
GLY
23
n
23
GLY
23
D
PHE
24
n
24
PHE
24
D
PHE
25
n
25
PHE
25
D
TYR
26
n
26
TYR
26
D
THR
27
n
27
THR
27
D
PRO
28
n
28
PRO
28
D
LYS
29
n
29
LYS
29
D
ALA
30
n
30
ALA
30
D
3.4144
-2.1602
-4.0309
6.4862
-0.4812
8.0804
0.1715
0.5704
-0.9061
0.1609
-0.2471
-0.3420
0.9889
-0.4539
0.0267
0.4350
0.0166
-0.0744
0.2209
-0.0528
0.2629
refined
-8.7414
-11.5960
-13.3067
X-RAY DIFFRACTION
6.9505
2.3868
1.7145
5.2720
-4.5259
6.8323
0.0787
-0.2179
-0.5636
-0.0420
-0.1258
-0.1657
0.6524
-0.3193
0.0428
0.1724
-0.0745
-0.0723
0.1739
-0.0086
0.2812
refined
-16.0741
-12.0344
-4.3649
X-RAY DIFFRACTION
3.7312
1.4623
-4.4489
3.7388
-3.8692
7.1313
-0.1135
-0.4581
0.0962
-0.0020
-0.1748
0.0101
-0.0476
0.6264
0.2367
0.1033
0.0029
-0.0433
0.1282
0.0033
0.0834
refined
-6.4181
-6.9076
-1.3381
X-RAY DIFFRACTION
6.0408
-2.4635
-2.7736
4.8378
0.9871
4.1090
-0.1174
0.2546
-0.1245
-0.3155
0.2188
0.3241
0.7042
-0.3812
-0.0950
0.2007
-0.0465
-0.0361
0.0880
0.0272
0.1237
refined
-4.2637
-16.9686
0.2540
X-RAY DIFFRACTION
7.2382
4.0732
5.2232
5.5348
3.3790
4.1385
-0.0707
-1.0810
-0.4768
0.9828
-0.3033
-0.2375
0.4413
0.2046
0.4276
0.3403
0.0553
0.0193
0.3419
0.0719
0.1352
refined
2.4628
-14.3459
13.0973
X-RAY DIFFRACTION
9.5875
6.6202
3.5597
9.7251
0.3914
6.8877
-0.0115
0.2547
-0.3977
0.5780
0.4033
-0.3902
-0.0519
0.5584
-0.3422
0.3750
0.1241
0.0377
0.2234
-0.0183
0.2093
refined
8.4469
-18.2120
4.2988
X-RAY DIFFRACTION
4.2684
-2.2172
-2.9665
7.8155
6.1462
5.2438
0.2082
0.0406
0.1000
-0.2679
-0.0678
-0.0584
-0.1549
-0.0236
-0.1460
0.1400
0.0274
-0.0244
0.1008
0.0149
0.1136
refined
2.2755
-9.4523
0.7957
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
CHAIN A AND (RESID 1:8 )
X-RAY DIFFRACTION
2
CHAIN A AND (RESID 13:19 )
X-RAY DIFFRACTION
3
CHAIN B AND (RESID 9:18 )
X-RAY DIFFRACTION
4
CHAIN B AND (RESID 23:27 ) OR CHAIN D AND (RESID 23:27 )
X-RAY DIFFRACTION
5
CHAIN C AND (RESID 1:8 )
X-RAY DIFFRACTION
6
CHAIN C AND (RESID 13:19 )
X-RAY DIFFRACTION
7
CHAIN D AND (RESID 9:18 )
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
1660
-16
3590
1670
-15
3590
B
HIS
10
B
NE2
HIS
10
1_555
B
CU
101
E
CU
CU
1_555
B
HOH
215
H
O
HOH
1_555
94.5
D
HIS
10
D
NE2
HIS
10
1_555
D
CU
101
F
CU
CU
1_555
D
HOH
221
J
O
HOH
1_555
107.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
TYR
26
B
N
TYR
26
D
O
PHE
24
D
O
PHE
24
1
B
CU
101
E
CU
1
D
CU
101
F
CU
1
B
HOH
218
H
HOH
1
B
HOH
220
H
HOH
1
D
HOH
214
J
HOH
1
B
ALA
30
B
ALA
30
1
Y
1
B
B
O
O
HOH
HOH
206
215
2.08
1
A
A
OH
O
TYR
HOH
19
103
2.17
1
D
D
OH
O
TYR
HOH
26
208
2.18
1
A
SER
9
-119.89
-130.85
1
C
SER
9
-88.80
-155.96
0.2016
0.1654
0.1673
1.900
16.746
312
6368
6337
4.92
99.64
0.17
Random
1
2.02
MOLECULAR REPLACEMENT
22.71
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
1.900
16.746
57
853
2
0
794
0.008
838
1.047
1131
17.171
293
0.077
125
0.004
147
0.2576
0.1962
2.3931
159
3012
100.00
0.1783
0.1525
16.7465
153
3013
100.00
1.9
16.75
4M4I
6368
6340
-2
-3
1
99.6
1.90
1.97
1
99.1
data collection
CrysalisPro
phasing
MOLREP
refinement
PHENIX
(phenix.refine: 1.8.1_1168)
data reduction
CrysalisPro
data scaling
CrysalisPro
Insulin
Radiation damage study of Cu T6-insulin - 0.12 MGy
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
GLY
1
A
GLY
1
HELX_P
A
SER
9
A
SER
9
1
1
9
A
SER
12
A
SER
12
HELX_P
A
ASN
18
A
ASN
18
1
2
7
B
GLY
8
B
GLY
8
HELX_P
B
GLY
20
B
GLY
20
1
3
13
B
GLU
21
B
GLU
21
HELX_P
B
GLY
23
B
GLY
23
5
4
3
C
ILE
2
C
ILE
2
HELX_P
C
CYS
7
C
CYS
7
1
5
6
C
SER
12
C
SER
12
HELX_P
C
GLU
17
C
GLU
17
1
6
6
C
ASN
18
C
ASN
18
HELX_P
C
CYS
20
C
CYS
20
5
7
3
D
GLY
8
D
GLY
8
HELX_P
D
GLY
20
D
GLY
20
1
8
13
D
GLU
21
D
GLU
21
HELX_P
D
GLY
23
D
GLY
23
5
9
3
disulf
2.018
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
11
A
SG
CYS
11
1_555
disulf
2.011
A
CYS
7
A
SG
CYS
7
1_555
B
CYS
7
B
SG
CYS
7
1_555
disulf
2.043
A
CYS
20
A
SG
CYS
20
1_555
B
CYS
19
B
SG
CYS
19
1_555
disulf
2.035
B
C
CYS
6
C
SG
CYS
6
1_555
C
CYS
11
C
SG
CYS
11
1_555
disulf
2.037
A
C
CYS
6
C
SG
CYS
6
1_555
C
CYS
11
C
SG
CYS
11
1_555
disulf
2.028
C
CYS
7
C
SG
CYS
7
1_555
D
CYS
7
D
SG
CYS
7
1_555
disulf
2.021
C
CYS
20
C
SG
CYS
20
1_555
D
CYS
19
D
SG
CYS
19
1_555
metalc
2.018
B
HIS
10
B
NE2
HIS
10
1_555
B
CU
101
E
CU
CU
1_555
metalc
2.061
D
HIS
10
D
NE2
HIS
10
1_555
D
CU
101
F
CU
CU
1_555
metalc
2.309
B
CU
101
E
CU
CU
1_555
B
HOH
215
H
O
HOH
1_555
metalc
2.494
D
CU
101
F
CU
CU
1_555
D
HOH
221
J
O
HOH
1_555
HORMONE
Hormone, Copper binding
INS_BOVIN
UNP
1
85
P01317
GIVEQCCASVCSLYQLENYCN
INS_BOVIN
UNP
2
25
P01317
FVNQHLCGSHLVEALYLVCGERGFFYTPKA
85
105
4M4I
1
21
P01317
A
1
1
21
25
54
4M4I
1
30
P01317
B
2
1
30
85
105
4M4I
1
21
P01317
C
1
1
21
25
54
4M4I
1
30
P01317
D
2
1
30
2
anti-parallel
B
PHE
24
B
PHE
24
B
TYR
26
B
TYR
26
D
PHE
24
D
PHE
24
D
TYR
26
D
TYR
26
BINDING SITE FOR RESIDUE CU B 101
Software
6
BINDING SITE FOR RESIDUE CU D 101
Software
6
B
HIS
10
B
HIS
10
6
1_555
B
HIS
10
B
HIS
10
6
2_555
B
HIS
10
B
HIS
10
6
3_555
B
HOH
215
H
HOH
6
3_555
B
HOH
215
H
HOH
6
2_555
B
HOH
215
H
HOH
6
1_555
D
HIS
10
D
HIS
10
6
3_555
D
HIS
10
D
HIS
10
6
1_555
D
HIS
10
D
HIS
10
6
2_555
D
HOH
221
J
HOH
6
2_555
D
HOH
221
J
HOH
6
3_555
D
HOH
221
J
HOH
6
1_555
146
H 3