0.007081 0.000000 0.004503 -0.000000 0.032670 0.000000 0.000000 -0.000000 0.013194 0.000000 0.000000 0.000000 Malashkevich, V.N. Padlan, F.C. Toro, R. Girvin, M. Almo, S.C. New York Structural Genomics Research Consortium (NYSGRC) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 122.450 90.000 141.216 30.609 89.817 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C N 124 N N N 125 N C N 126 N O N 127 N N N 128 N C N 129 N N N 130 N C N 131 N C N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 R C N 148 N C N 149 N O N 150 N C N 151 N S N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N O N 161 N P N 162 N O N 163 N O N 164 N O N 165 N C N 166 R C N 167 N O N 168 S C N 169 N O N 170 R C N 171 N O N 172 R C Y 173 N N Y 174 N C Y 175 N N Y 176 N C N 177 N C N 178 N O N 179 N N N 180 N C N 181 N N N 182 N N Y 183 N C N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N N N 199 S C N 200 N C N 201 N O N 202 N C N 203 N C N 204 N C N 205 N O N 206 N N N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C N 223 N C N 224 N C N 225 N O N 226 N O N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 N C N 239 N C N 240 N O N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C Y 252 N C Y 253 N N Y 254 N C Y 255 N C Y 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N O N 269 N H N 270 N H N 271 N N N 272 S C N 273 N C N 274 N O N 275 S C N 276 N C N 277 N C N 278 N C N 279 N O N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C N 298 N C N 299 N C N 300 N C N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C N 320 N C N 321 N C N 322 N C N 323 N N N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N N N 341 S C N 342 N C N 343 N O N 344 N C N 345 N C N 346 N S N 347 N C N 348 N O N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N MG N 361 N NA N 362 N N N 363 S C N 364 N C N 365 N O N 366 N C Y 367 N C Y 368 N C Y 369 N C Y 370 N C Y 371 N C Y 372 N C N 373 N O N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N N N 386 S C N 387 N C N 388 N O N 389 N C N 390 N C N 391 N C N 392 N O N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N N N 403 S C N 404 N C N 405 N O N 406 N C N 407 N O N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 R C N 421 N O N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N N Y 442 N C Y 443 N C Y 444 N C Y 445 N C Y 446 N C N 447 N O N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N N N 461 S C N 462 N C N 463 N O N 464 N C Y 465 N C Y 466 N C Y 467 N C Y 468 N C Y 469 N C Y 470 N C N 471 N O N 472 N O N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N O N 485 N P N 486 N O N 487 N O N 488 N O N 489 N C N 490 R C N 491 N O N 492 S C N 493 N O N 494 R C N 495 N O N 496 R C N 497 N N N 498 N C N 499 N O N 500 N N N 501 N C N 502 N O N 503 N C N 504 N C N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N N N 519 S C N 520 N C N 521 N O N 522 N C N 523 N C N 524 N C N 525 N O N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing Y 182 N sing Y 183 N sing Y 184 N doub N 185 N sing Y 186 N sing N 187 N sing Y 188 N doub N 189 N doub N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N doub N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N doub N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing Y 255 N sing Y 256 N doub Y 257 N doub N 258 N sing Y 259 N sing N 260 N sing Y 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N doub N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing Y 363 N doub Y 364 N sing Y 365 N sing N 366 N sing Y 367 N doub N 368 N sing Y 369 N doub N 370 N sing Y 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N doub N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N doub N 428 N sing N 429 N sing N 430 N sing N 431 N sing Y 432 N doub Y 433 N sing Y 434 N sing N 435 N sing Y 436 N doub Y 437 N sing Y 438 N sing N 439 N sing Y 440 N sing Y 441 N doub N 442 N sing Y 443 N doub N 444 N sing Y 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N doub N 456 N sing N 457 N sing N 458 N sing N 459 N sing Y 460 N doub Y 461 N sing Y 462 N sing N 463 N sing Y 464 N doub N 465 N sing Y 466 N doub N 467 N sing Y 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N doub N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N doub N 500 N sing N 501 N sing N 502 N sing N 503 N doub N 504 N sing N 505 N doub N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N doub N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing to be published 0353 Crystal structure of the aptamer minE-lysozyme complex 10.2210/pdb4m4o/pdb pdb_00004m4o 100 1 CCD 2012-03-23 ADSC QUANTUM 315 SINGLE WAVELENGTH x-ray 1 1.075 1.0 X29A NSLS 1.075 SYNCHROTRON NSLS BEAMLINE X29A 14331.160 Lysozyme C 3.2.1.17 1 man polymer 18999.311 RNA (59-MER) 1 syn polymer 22.990 SODIUM ION 1 syn non-polymer 24.305 MAGNESIUM ION 2 syn non-polymer 18.015 water 220 nat water 1,4-beta-N-acetylmuramidase C, Allergen Gal d IV no no KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL A NYSGRC-032671 polypeptide(L) no no GGGUUCAUCAGGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACUUGACGAACCC GGGUUCAUCAGGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACUUGACGAACCC B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n bantam,chickens sample LYZ, LYZ1 9031 Gallus gallus 562 Escherichia coli BL21(DE3)CODON+RIL plasmid BC-PSGX3(BC) 1 2.46 49.95 VAPOR DIFFUSION, SITTING DROP 8.5 0.17M Sodium Acetate, 0.085M Tris-HCl, pH 8.5, 25.5% PEG-4000, 15% v/v glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 -12.280 1 19 B 1 B 59 -6.391 B_G1:C59_B 1 -15.149 0.148 0.327 -0.013 -6.380 1 19 B 2 B 58 -7.118 B_G2:C58_B 2 -9.715 -0.162 -0.032 -0.191 -14.480 1 19 B 3 B 57 2.879 B_G3:C57_B 3 -14.076 -1.202 -0.201 -0.145 -3.377 1 20 B 4 B 56 6.027 B_U4:A56_B 4 -14.761 -0.118 0.054 0.000 1.868 1 20 B 5 B 55 2.106 B_U5:A55_B 5 -9.359 0.091 0.115 -0.186 -2.335 1 19 B 6 B 54 1.795 B_C6:G54_B 6 -8.935 0.183 0.246 -0.097 5.273 B 7 B 53 3.286 B_A7:C53_B 7 -1.418 2.336 0.104 0.268 -0.472 1 20 B 8 B 52 2.356 B_U8:A52_B 8 -12.692 -0.002 -0.203 -0.181 2.192 1 19 B 9 B 51 3.828 B_C9:G51_B 9 -13.965 0.457 0.245 -0.338 -1.301 1 20 B 10 B 50 4.844 B_A10:U50_B 10 -17.115 -0.053 -0.005 -0.415 0.334 1 28 B 11 B 49 5.061 B_G11:U49_B 11 -15.397 -2.099 0.308 -0.474 -4.197 1 19 B 12 B 48 4.596 B_G12:C48_B 12 -17.009 -0.096 0.148 0.040 7.327 1 8 B 13 B 47 -14.303 B_G13:A47_B 13 -16.890 -0.151 -0.147 1.206 -3.354 1 19 B 14 B 46 5.935 B_C14:G46_B 14 -15.834 -0.032 0.419 -0.009 -5.297 1 20 B 15 B 45 9.258 B_U15:A45_B 15 -11.840 0.120 0.473 -0.017 2.524 1 19 B 23 B 44 1.891 B_G23:C44_B 16 -9.597 -0.372 0.342 0.085 2.028 1 19 B 24 B 43 -1.166 B_C24:G43_B 17 -12.479 0.053 0.219 -0.175 2.535 1 20 B 25 B 42 0.999 B_A25:U42_B 18 -6.961 0.458 -0.100 -0.147 -2.232 1 19 B 26 B 41 4.579 B_G26:C41_B 19 -9.232 -0.247 -0.311 -0.161 -22.377 1 19 B 28 B 39 0.727 B_G28:C39_B 20 2.966 -0.206 -0.907 -0.053 -0.443 1 19 B 36 B 32 -2.480 B_G36:C32_B 21 -15.730 -0.346 0.236 -0.190 -16.472 1 20 B 30 B 35 -5.050 B_U30:A35_B 22 4.723 -0.187 -0.043 -0.121 -4.778 2 21 B 18 B 22 172.096 B_A18:U22_B 23 -7.791 0.107 -0.136 1.427 15.233 B 19 B 38 -145.085 B_G19:U38_B 24 -4.737 -1.483 -0.249 -7.055 2.650 33.659 B B 1 2 12.410 B B 59 58 3.048 7.125 -0.510 -1.776 BB_G1G2:C58C59_BB 1 -3.082 5.368 32.777 -4.094 0.437 2.724 33.419 B B 2 3 14.347 B B 58 57 3.272 8.168 -0.154 -1.921 BB_G2G3:C57C58_BB 2 -1.566 2.751 32.396 -4.600 0.026 2.853 36.964 B B 3 4 8.793 B B 57 56 3.005 5.542 -0.449 -1.047 BB_G3U4:A56C57_BB 3 -4.586 7.277 36.281 -2.327 0.150 2.674 31.702 B B 4 5 13.078 B B 56 55 3.050 7.086 0.504 -1.346 BB_U4U5:A55A56_BB 4 -0.577 1.064 30.915 -3.620 -1.016 2.860 35.369 B B 5 6 11.145 B B 55 54 3.240 6.729 0.645 -1.921 BB_U5C6:G54A55_BB 5 2.005 -3.321 34.687 -4.096 -0.784 2.605 30.906 B B 6 7 11.255 B B 54 53 3.056 5.960 -1.315 -1.802 BB_C6A7:C53G54_BB 6 1.318 -2.488 30.312 -4.391 2.691 1.964 29.086 B B 7 8 37.254 B B 53 52 3.480 17.320 0.221 -1.352 BB_A7U8:A52C53_BB 7 6.433 -13.837 22.563 -6.274 0.890 2.328 32.191 B B 8 9 21.155 B B 52 51 3.158 11.482 0.738 -1.745 BB_U8C9:G51A52_BB 8 -1.006 1.854 30.107 -4.928 -1.487 2.472 31.840 B B 9 10 19.899 B B 51 50 3.171 10.705 -0.280 -1.508 BB_C9A10:U50G51_BB 9 2.250 -4.183 29.948 -4.489 0.876 1.854 23.048 B B 10 11 22.898 B B 50 49 2.956 8.871 0.556 -1.944 BB_A10G11:U49U50_BB 10 -3.929 10.141 20.931 -7.264 -2.454 3.176 44.933 B B 11 12 6.613 B B 49 48 3.311 5.045 -0.102 -1.084 BB_G11G12:C48U49_BB 11 0.327 -0.429 44.663 -1.872 0.163 2.770 20.632 B B 12 13 4.353 B B 48 47 3.050 1.555 -1.351 -1.664 BB_G12G13:A47C48_BB 12 2.045 -5.726 20.474 -5.253 4.571 2.992 36.761 B B 13 14 7.803 B B 47 46 3.343 4.898 1.188 -1.389 BB_G13C14:G46A47_BB 13 -4.008 6.385 36.230 -2.854 -2.417 2.812 37.276 B B 14 15 12.103 B B 46 45 3.133 7.684 0.652 -1.298 BB_C14U15:A45G46_BB 14 -0.024 0.038 36.503 -2.966 -1.022 1.841 10.045 B B 15 23 28.657 B B 45 44 2.939 4.735 1.775 -2.388 BB_U15G23:C44A45_BB 15 2.927 -17.711 8.364 -20.647 -5.805 3.106 36.636 B B 23 24 3.892 B B 44 43 3.216 2.445 -0.302 -1.561 BB_G23C24:G43C44_BB 16 0.226 -0.360 36.556 -2.808 0.510 2.723 34.116 B B 24 25 13.754 B B 43 42 3.173 7.992 0.274 -1.661 BB_C24A25:U42G43_BB 17 2.442 -4.202 33.106 -3.991 -0.112 3.114 25.410 B B 25 26 8.977 B B 42 41 3.449 3.931 0.855 -2.229 BB_A25G26:C41U42_BB 18 1.540 -3.518 25.062 -6.212 -1.495 6.739 82.898 B B 26 28 13.622 B B 41 39 7.086 17.864 1.234 -1.883 BB_G26G28:C39C41_BB 19 15.498 -11.817 80.044 -2.371 -0.109 -5.115 -167.035 B B 28 36 61.518 B B 39 32 -4.020 -120.381 1.186 -5.146 BB_G28G36:C32C39_BB 20 -95.827 -48.970 -120.091 1.649 1.346 4.328 162.553 B B 36 30 32.918 B B 32 35 4.163 63.985 2.450 -1.858 BB_G36U30:A35C32_BB 21 126.751 -65.209 124.490 -1.395 -0.338 2.896 -152.675 B B 18 19 0.923 B B 22 38 2.896 -1.794 -0.336 0.837 BB_A18G19:U38U22_BB 22 -3.769 -1.939 -152.657 -0.425 -0.185 New York Structural Genomics Research Consortium NYSGRC PSI:Biology chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Data collection Database references Derived calculations Refinement description 1 0 2013-12-18 1 1 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2013-08-07 REL REL NA SODIUM ION MG MAGNESIUM ION HOH water 1JKB PDB experimental model NA 502 3 NA NA 101 B MG 500 4 MG MG 102 B MG 501 4 MG MG 103 B HOH 2 5 HOH HOH 201 A HOH 3 5 HOH HOH 202 A HOH 4 5 HOH HOH 203 A HOH 6 5 HOH HOH 204 A HOH 7 5 HOH HOH 205 A HOH 8 5 HOH HOH 206 A HOH 9 5 HOH HOH 207 A HOH 11 5 HOH HOH 208 A HOH 14 5 HOH HOH 209 A HOH 15 5 HOH HOH 210 A HOH 16 5 HOH HOH 211 A HOH 19 5 HOH HOH 212 A HOH 92 5 HOH HOH 213 A HOH 99 5 HOH HOH 214 A HOH 101 5 HOH HOH 215 A HOH 106 5 HOH HOH 216 A HOH 116 5 HOH HOH 217 A HOH 124 5 HOH HOH 218 A HOH 127 5 HOH HOH 219 A HOH 129 5 HOH HOH 220 A HOH 134 5 HOH HOH 221 A HOH 149 5 HOH HOH 222 A HOH 151 5 HOH HOH 223 A HOH 152 5 HOH HOH 224 A HOH 153 5 HOH HOH 225 A HOH 154 5 HOH HOH 226 A HOH 166 5 HOH HOH 227 A HOH 177 5 HOH HOH 228 A HOH 191 5 HOH HOH 229 A HOH 192 5 HOH HOH 230 A HOH 219 5 HOH HOH 231 A HOH 220 5 HOH HOH 232 A HOH 221 5 HOH HOH 233 A HOH 222 5 HOH HOH 234 A HOH 223 5 HOH HOH 235 A HOH 224 5 HOH HOH 236 A HOH 226 5 HOH HOH 237 A HOH 227 5 HOH HOH 238 A HOH 228 5 HOH HOH 239 A HOH 230 5 HOH HOH 240 A HOH 231 5 HOH HOH 241 A HOH 232 5 HOH HOH 242 A HOH 233 5 HOH HOH 243 A HOH 234 5 HOH HOH 244 A HOH 235 5 HOH HOH 245 A HOH 237 5 HOH HOH 246 A HOH 238 5 HOH HOH 247 A HOH 239 5 HOH HOH 248 A HOH 241 5 HOH HOH 249 A HOH 242 5 HOH HOH 250 A HOH 243 5 HOH HOH 251 A HOH 244 5 HOH HOH 252 A HOH 246 5 HOH HOH 253 A HOH 247 5 HOH HOH 254 A HOH 248 5 HOH HOH 255 A HOH 249 5 HOH HOH 256 A HOH 250 5 HOH HOH 257 A HOH 251 5 HOH HOH 258 A HOH 252 5 HOH HOH 259 A HOH 253 5 HOH HOH 260 A HOH 258 5 HOH HOH 261 A HOH 259 5 HOH HOH 262 A HOH 261 5 HOH HOH 263 A HOH 262 5 HOH HOH 264 A HOH 263 5 HOH HOH 265 A HOH 264 5 HOH HOH 266 A HOH 266 5 HOH HOH 267 A HOH 268 5 HOH HOH 268 A HOH 270 5 HOH HOH 269 A HOH 271 5 HOH HOH 270 A HOH 272 5 HOH HOH 271 A HOH 273 5 HOH HOH 272 A HOH 274 5 HOH HOH 273 A HOH 276 5 HOH HOH 274 A HOH 279 5 HOH HOH 275 A HOH 280 5 HOH HOH 276 A HOH 281 5 HOH HOH 277 A HOH 284 5 HOH HOH 278 A HOH 285 5 HOH HOH 279 A HOH 291 5 HOH HOH 280 A HOH 292 5 HOH HOH 281 A HOH 293 5 HOH HOH 282 A HOH 295 5 HOH HOH 283 A HOH 296 5 HOH HOH 284 A HOH 297 5 HOH HOH 285 A HOH 299 5 HOH HOH 286 A HOH 300 5 HOH HOH 287 A HOH 301 5 HOH HOH 288 A HOH 302 5 HOH HOH 289 A HOH 305 5 HOH HOH 290 A HOH 306 5 HOH HOH 291 A HOH 307 5 HOH HOH 292 A HOH 310 5 HOH HOH 293 A HOH 311 5 HOH HOH 294 A HOH 314 5 HOH HOH 295 A HOH 315 5 HOH HOH 296 A HOH 317 5 HOH HOH 297 A HOH 322 5 HOH HOH 298 A HOH 323 5 HOH HOH 299 A HOH 324 5 HOH HOH 300 A HOH 325 5 HOH HOH 301 A HOH 327 5 HOH HOH 302 A HOH 329 5 HOH HOH 303 A HOH 330 5 HOH HOH 304 A HOH 334 5 HOH HOH 305 A HOH 335 5 HOH HOH 306 A HOH 341 5 HOH HOH 307 A HOH 344 5 HOH HOH 308 A HOH 345 5 HOH HOH 309 A HOH 346 5 HOH HOH 310 A HOH 347 5 HOH HOH 311 A HOH 348 5 HOH HOH 312 A HOH 349 5 HOH HOH 313 A HOH 350 5 HOH HOH 314 A HOH 352 5 HOH HOH 315 A HOH 355 5 HOH HOH 316 A HOH 356 5 HOH HOH 317 A HOH 358 5 HOH HOH 318 A HOH 362 5 HOH HOH 319 A HOH 364 5 HOH HOH 320 A HOH 374 5 HOH HOH 321 A HOH 375 5 HOH HOH 322 A HOH 376 5 HOH HOH 323 A HOH 379 5 HOH HOH 324 A HOH 381 5 HOH HOH 325 A HOH 385 5 HOH HOH 326 A HOH 386 5 HOH HOH 327 A HOH 390 5 HOH HOH 328 A HOH 397 5 HOH HOH 329 A HOH 398 5 HOH HOH 330 A HOH 399 5 HOH HOH 331 A HOH 401 5 HOH HOH 332 A HOH 403 5 HOH HOH 333 A HOH 407 5 HOH HOH 334 A HOH 409 5 HOH HOH 335 A HOH 410 5 HOH HOH 336 A HOH 411 5 HOH HOH 337 A HOH 412 5 HOH HOH 338 A HOH 413 5 HOH HOH 339 A HOH 414 5 HOH HOH 340 A HOH 12 5 HOH HOH 201 B HOH 73 5 HOH HOH 202 B HOH 74 5 HOH HOH 203 B HOH 88 5 HOH HOH 204 B HOH 104 5 HOH HOH 205 B HOH 120 5 HOH HOH 206 B HOH 121 5 HOH HOH 207 B HOH 128 5 HOH HOH 208 B HOH 144 5 HOH HOH 209 B HOH 155 5 HOH HOH 210 B HOH 160 5 HOH HOH 211 B HOH 167 5 HOH HOH 212 B HOH 170 5 HOH HOH 213 B HOH 172 5 HOH HOH 214 B HOH 175 5 HOH HOH 215 B HOH 176 5 HOH HOH 216 B HOH 225 5 HOH HOH 217 B HOH 229 5 HOH HOH 218 B HOH 236 5 HOH HOH 219 B HOH 240 5 HOH HOH 220 B HOH 245 5 HOH HOH 221 B HOH 254 5 HOH HOH 222 B HOH 255 5 HOH HOH 223 B HOH 256 5 HOH HOH 224 B HOH 257 5 HOH HOH 225 B HOH 260 5 HOH HOH 226 B HOH 265 5 HOH HOH 227 B HOH 267 5 HOH HOH 228 B HOH 269 5 HOH HOH 229 B HOH 282 5 HOH HOH 230 B HOH 283 5 HOH HOH 231 B HOH 286 5 HOH HOH 232 B HOH 289 5 HOH HOH 233 B HOH 290 5 HOH HOH 234 B HOH 303 5 HOH HOH 235 B HOH 308 5 HOH HOH 236 B HOH 312 5 HOH HOH 237 B HOH 313 5 HOH HOH 238 B HOH 319 5 HOH HOH 239 B HOH 320 5 HOH HOH 240 B HOH 328 5 HOH HOH 241 B HOH 331 5 HOH HOH 242 B HOH 332 5 HOH HOH 243 B HOH 333 5 HOH HOH 244 B HOH 336 5 HOH HOH 245 B HOH 337 5 HOH HOH 246 B HOH 338 5 HOH HOH 247 B HOH 339 5 HOH HOH 248 B HOH 340 5 HOH HOH 249 B HOH 342 5 HOH HOH 250 B HOH 343 5 HOH HOH 251 B HOH 351 5 HOH HOH 252 B HOH 357 5 HOH HOH 253 B HOH 359 5 HOH HOH 254 B HOH 360 5 HOH HOH 255 B HOH 361 5 HOH HOH 256 B HOH 363 5 HOH HOH 257 B HOH 367 5 HOH HOH 258 B HOH 369 5 HOH HOH 259 B HOH 370 5 HOH HOH 260 B HOH 371 5 HOH HOH 261 B HOH 372 5 HOH HOH 262 B HOH 377 5 HOH HOH 263 B HOH 378 5 HOH HOH 264 B HOH 380 5 HOH HOH 265 B HOH 387 5 HOH HOH 266 B HOH 388 5 HOH HOH 267 B HOH 389 5 HOH HOH 268 B HOH 391 5 HOH HOH 269 B HOH 392 5 HOH HOH 270 B HOH 393 5 HOH HOH 271 B HOH 394 5 HOH HOH 272 B HOH 395 5 HOH HOH 273 B HOH 396 5 HOH HOH 274 B HOH 400 5 HOH HOH 275 B HOH 404 5 HOH HOH 276 B HOH 406 5 HOH HOH 277 B HOH 408 5 HOH HOH 278 B HOH 415 5 HOH HOH 279 B HOH 416 5 HOH HOH 280 B 2.500 2.500 37.980 37.980 Phaser MODE: MR_AUTO LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A PHE 3 n 3 PHE 3 A GLY 4 n 4 GLY 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A ALA 10 n 10 ALA 10 A ALA 11 n 11 ALA 11 A MET 12 n 12 MET 12 A LYS 13 n 13 LYS 13 A ARG 14 n 14 ARG 14 A HIS 15 n 15 HIS 15 A GLY 16 n 16 GLY 16 A LEU 17 n 17 LEU 17 A ASP 18 n 18 ASP 18 A ASN 19 n 19 ASN 19 A TYR 20 n 20 TYR 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A TYR 23 n 23 TYR 23 A SER 24 n 24 SER 24 A LEU 25 n 25 LEU 25 A GLY 26 n 26 GLY 26 A ASN 27 n 27 ASN 27 A TRP 28 n 28 TRP 28 A VAL 29 n 29 VAL 29 A CYS 30 n 30 CYS 30 A ALA 31 n 31 ALA 31 A ALA 32 n 32 ALA 32 A LYS 33 n 33 LYS 33 A PHE 34 n 34 PHE 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A ASN 37 n 37 ASN 37 A PHE 38 n 38 PHE 38 A ASN 39 n 39 ASN 39 A THR 40 n 40 THR 40 A GLN 41 n 41 GLN 41 A ALA 42 n 42 ALA 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A ARG 45 n 45 ARG 45 A ASN 46 n 46 ASN 46 A THR 47 n 47 THR 47 A ASP 48 n 48 ASP 48 A GLY 49 n 49 GLY 49 A SER 50 n 50 SER 50 A THR 51 n 51 THR 51 A ASP 52 n 52 ASP 52 A TYR 53 n 53 TYR 53 A GLY 54 n 54 GLY 54 A ILE 55 n 55 ILE 55 A LEU 56 n 56 LEU 56 A GLN 57 n 57 GLN 57 A ILE 58 n 58 ILE 58 A ASN 59 n 59 ASN 59 A SER 60 n 60 SER 60 A ARG 61 n 61 ARG 61 A TRP 62 n 62 TRP 62 A TRP 63 n 63 TRP 63 A CYS 64 n 64 CYS 64 A ASN 65 n 65 ASN 65 A ASP 66 n 66 ASP 66 A GLY 67 n 67 GLY 67 A ARG 68 n 68 ARG 68 A THR 69 n 69 THR 69 A PRO 70 n 70 PRO 70 A GLY 71 n 71 GLY 71 A SER 72 n 72 SER 72 A ARG 73 n 73 ARG 73 A ASN 74 n 74 ASN 74 A LEU 75 n 75 LEU 75 A CYS 76 n 76 CYS 76 A ASN 77 n 77 ASN 77 A ILE 78 n 78 ILE 78 A PRO 79 n 79 PRO 79 A CYS 80 n 80 CYS 80 A SER 81 n 81 SER 81 A ALA 82 n 82 ALA 82 A LEU 83 n 83 LEU 83 A LEU 84 n 84 LEU 84 A SER 85 n 85 SER 85 A SER 86 n 86 SER 86 A ASP 87 n 87 ASP 87 A ILE 88 n 88 ILE 88 A THR 89 n 89 THR 89 A ALA 90 n 90 ALA 90 A SER 91 n 91 SER 91 A VAL 92 n 92 VAL 92 A ASN 93 n 93 ASN 93 A CYS 94 n 94 CYS 94 A ALA 95 n 95 ALA 95 A LYS 96 n 96 LYS 96 A LYS 97 n 97 LYS 97 A ILE 98 n 98 ILE 98 A VAL 99 n 99 VAL 99 A SER 100 n 100 SER 100 A ASP 101 n 101 ASP 101 A GLY 102 n 102 GLY 102 A ASN 103 n 103 ASN 103 A GLY 104 n 104 GLY 104 A MET 105 n 105 MET 105 A ASN 106 n 106 ASN 106 A ALA 107 n 107 ALA 107 A TRP 108 n 108 TRP 108 A VAL 109 n 109 VAL 109 A ALA 110 n 110 ALA 110 A TRP 111 n 111 TRP 111 A ARG 112 n 112 ARG 112 A ASN 113 n 113 ASN 113 A ARG 114 n 114 ARG 114 A CYS 115 n 115 CYS 115 A LYS 116 n 116 LYS 116 A GLY 117 n 117 GLY 117 A THR 118 n 118 THR 118 A ASP 119 n 119 ASP 119 A VAL 120 n 120 VAL 120 A GLN 121 n 121 GLN 121 A ALA 122 n 122 ALA 122 A TRP 123 n 123 TRP 123 A ILE 124 n 124 ILE 124 A ARG 125 n 125 ARG 125 A GLY 126 n 126 GLY 126 A CYS 127 n 127 CYS 127 A ARG 128 n 128 ARG 128 A LEU 129 n 129 LEU 129 A G 1 n 1 G 1 B G 2 n 2 G 2 B G 3 n 3 G 3 B U 4 n 4 U 4 B U 5 n 5 U 5 B C 6 n 6 C 6 B A 7 n 7 A 7 B U 8 n 8 U 8 B C 9 n 9 C 9 B A 10 n 10 A 10 B G 11 n 11 G 11 B G 12 n 12 G 12 B G 13 n 13 G 13 B C 14 n 14 C 14 B U 15 n 15 U 15 B A 16 n 16 A 16 B A 17 n 17 A 17 B A 18 n 18 A 18 B G 19 n 19 G 19 B A 20 n 20 A 20 B G 21 n 21 G 21 B U 22 n 22 U 22 B G 23 n 23 G 23 B C 24 n 24 C 24 B A 25 n 25 A 25 B G 26 n 26 G 26 B A 27 n 27 A 27 B G 28 n 28 G 28 B U 29 n 29 U 29 B U 30 n 30 U 30 B A 31 n 31 A 31 B C 32 n 32 C 32 B U 33 n 33 U 33 B U 34 n 34 U 34 B A 35 n 35 A 35 B G 36 n 36 G 36 B U 37 n 37 U 37 B U 38 n 38 U 38 B C 39 n 39 C 39 B A 40 n 40 A 40 B C 41 n 41 C 41 B U 42 n 42 U 42 B G 43 n 43 G 43 B C 44 n 44 C 44 B A 45 n 45 A 45 B G 46 n 46 G 46 B A 47 n 47 A 47 B C 48 n 48 C 48 B U 49 n 49 U 49 B U 50 n 50 U 50 B G 51 n 51 G 51 B A 52 n 52 A 52 B C 53 n 53 C 53 B G 54 n 54 G 54 B A 55 n 55 A 55 B A 56 n 56 A 56 B C 57 n 57 C 57 B C 58 n 58 C 58 B C 59 n 59 C 59 B 0.5496 -0.0383 0.2409 0.8228 0.2682 1.5245 -0.0638 -0.0032 0.0051 -0.0318 0.0256 0.0781 -0.0068 0.0192 0.0382 0.0490 -0.0088 -0.0202 0.0035 0.0116 0.0542 refined -11.9357 -27.2567 58.1134 X-RAY DIFFRACTION 1.2834 0.2848 -1.1013 0.0802 -0.2523 0.9505 -0.0242 0.0831 0.0829 -0.0251 0.0786 0.0072 0.0417 -0.0926 -0.0544 0.1093 -0.0705 -0.0226 0.2050 0.0138 0.0942 refined 3.3064 -19.3721 15.4927 X-RAY DIFFRACTION A 1 A 129 X-RAY DIFFRACTION 1 B 1 B 59 X-RAY DIFFRACTION 2 B 101 B 103 X-RAY DIFFRACTION 2 author_defined_assembly 2 dimeric B A 17 B OP2 A 17 1_555 B MG 102 D MG MG 1_555 B HOH 239 G O HOH 1_555 90.0 B A 17 B OP2 A 17 1_555 B MG 102 D MG MG 1_555 B HOH 259 G O HOH 1_555 92.5 B HOH 239 G O HOH 1_555 B MG 102 D MG MG 1_555 B HOH 259 G O HOH 1_555 165.3 B A 17 B OP2 A 17 1_555 B MG 102 D MG MG 1_555 B HOH 260 G O HOH 1_555 95.7 B HOH 239 G O HOH 1_555 B MG 102 D MG MG 1_555 B HOH 260 G O HOH 1_555 85.6 B HOH 259 G O HOH 1_555 B MG 102 D MG MG 1_555 B HOH 260 G O HOH 1_555 79.7 B A 17 B OP2 A 17 1_555 B MG 102 D MG MG 1_555 B HOH 261 G O HOH 1_555 173.5 B HOH 239 G O HOH 1_555 B MG 102 D MG MG 1_555 B HOH 261 G O HOH 1_555 84.6 B HOH 259 G O HOH 1_555 B MG 102 D MG MG 1_555 B HOH 261 G O HOH 1_555 91.9 B HOH 260 G O HOH 1_555 B MG 102 D MG MG 1_555 B HOH 261 G O HOH 1_555 80.3 B A 17 B OP2 A 17 1_555 B MG 102 D MG MG 1_555 B HOH 262 G O HOH 1_555 99.1 B HOH 239 G O HOH 1_555 B MG 102 D MG MG 1_555 B HOH 262 G O HOH 1_555 90.7 B HOH 259 G O HOH 1_555 B MG 102 D MG MG 1_555 B HOH 262 G O HOH 1_555 103.2 B HOH 260 G O HOH 1_555 B MG 102 D MG MG 1_555 B HOH 262 G O HOH 1_555 164.7 B HOH 261 G O HOH 1_555 B MG 102 D MG MG 1_555 B HOH 262 G O HOH 1_555 84.5 B G 21 B O6 G 21 1_555 B NA 101 C NA NA 1_555 B HOH 202 G O HOH 1_555 83.8 B G 21 B O6 G 21 1_555 B NA 101 C NA NA 1_555 B HOH 206 G O HOH 1_555 84.3 B HOH 202 G O HOH 1_555 B NA 101 C NA NA 1_555 B HOH 206 G O HOH 1_555 164.8 B G 21 B O6 G 21 1_555 B NA 101 C NA NA 1_555 B HOH 211 G O HOH 1_555 83.7 B HOH 202 G O HOH 1_555 B NA 101 C NA NA 1_555 B HOH 211 G O HOH 1_555 104.1 B HOH 206 G O HOH 1_555 B NA 101 C NA NA 1_555 B HOH 211 G O HOH 1_555 83.9 B G 21 B O6 G 21 1_555 B NA 101 C NA NA 1_555 B HOH 212 G O HOH 1_555 93.4 B HOH 202 G O HOH 1_555 B NA 101 C NA NA 1_555 B HOH 212 G O HOH 1_555 89.7 B HOH 206 G O HOH 1_555 B NA 101 C NA NA 1_555 B HOH 212 G O HOH 1_555 81.6 B HOH 211 G O HOH 1_555 B NA 101 C NA NA 1_555 B HOH 212 G O HOH 1_555 165.4 B HOH 245 G O HOH 1_555 B MG 103 E MG MG 1_555 B HOH 246 G O HOH 1_555 90.4 B HOH 245 G O HOH 1_555 B MG 103 E MG MG 1_555 B HOH 247 G O HOH 1_555 93.3 B HOH 246 G O HOH 1_555 B MG 103 E MG MG 1_555 B HOH 247 G O HOH 1_555 80.8 B HOH 245 G O HOH 1_555 B MG 103 E MG MG 1_555 B HOH 248 G O HOH 1_555 85.2 B HOH 246 G O HOH 1_555 B MG 103 E MG MG 1_555 B HOH 248 G O HOH 1_555 89.7 B HOH 247 G O HOH 1_555 B MG 103 E MG MG 1_555 B HOH 248 G O HOH 1_555 170.3 B HOH 245 G O HOH 1_555 B MG 103 E MG MG 1_555 B HOH 277 G O HOH 1_555 91.4 B HOH 246 G O HOH 1_555 B MG 103 E MG MG 1_555 B HOH 277 G O HOH 1_555 171.6 B HOH 247 G O HOH 1_555 B MG 103 E MG MG 1_555 B HOH 277 G O HOH 1_555 107.4 B HOH 248 G O HOH 1_555 B MG 103 E MG MG 1_555 B HOH 277 G O HOH 1_555 82.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASN 44 A N ASN 44 A O ASP 52 A O ASP 52 A N TYR 53 A N TYR 53 A O ILE 58 A O ILE 58 1 B B P OP3 G G 1 1 -0.120 0.012 1.607 1.487 N 1 B B O3' P A A 16 17 -0.078 0.012 1.607 1.529 Y 1 B B O3' P C U 32 33 -0.088 0.012 1.607 1.519 Y 1 A LEU 84 -105.90 64.06 122.510 41.1093 17.480 24.6600 0.0000 8.8100 -11.2100 -0.0000 -13.4400 0.9620 0.9510 U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT 0.2066 0.1809 0.1822 2.0000 37.9800 1128 22156 5.1000 98.9000 0.2040 0.1771 1.000 0.500 0.8844 4.9570 0.0740 0.0373 0.0308 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.0370 0.0310 0.8000 0.8000 1.2000 1JKB MAXIMUM LIKELIHOOD MASK 2.0000 37.9800 220 2485 3 1261 1001 0.008 0.015 2448 1.162 1.526 3606 6.194 5.000 132 36.770 22.745 51 14.045 15.000 170 16.985 15.000 12 0.089 0.200 382 0.008 0.020 1418 1.478 4.754 519 2.267 76.094 648 2.125 8.004 1929 0.2730 0.2150 2.0530 78 1421 1499 20 92.8200 2.000 50.000 4M4O 22172 0.056 1.304 1 12.000 3.100 98.800 0.348 2.000 2.030 1010 0.858 1 2.700 90.300 0.308 2.030 2.070 1043 0.966 1 2.900 96.500 0.281 2.070 2.110 1096 0.927 1 3.000 98.600 0.282 2.110 2.150 1093 0.949 1 3.100 99.800 0.238 2.150 2.200 1124 0.985 1 3.100 100.000 0.212 2.200 2.250 1100 1.033 1 3.200 99.800 0.172 2.250 2.310 1111 1.101 1 3.200 99.900 0.161 2.310 2.370 1124 1.084 1 3.200 100.000 0.143 2.370 2.440 1088 1.125 1 3.200 100.000 0.121 2.440 2.520 1127 1.204 1 3.200 99.900 0.106 2.520 2.610 1115 1.154 1 3.200 99.700 0.085 2.610 2.710 1117 1.193 1 3.200 99.900 0.076 2.710 2.840 1102 1.300 1 3.200 99.900 0.059 2.840 2.990 1129 1.318 1 3.200 99.600 0.049 2.990 3.170 1110 1.447 1 3.100 99.600 0.046 3.170 3.420 1138 1.724 1 3.200 99.600 0.048 3.420 3.760 1120 2.285 1 3.100 99.100 0.046 3.760 4.310 1139 2.521 1 3.100 99.500 0.033 4.310 5.430 1123 1.442 1 3.000 98.300 0.027 5.430 50.000 1163 1.255 1 3.100 95.400 data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Tue Oct 18 19:46:39 2011 (svn ) http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.3.0 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection CBASS data reduction HKL-2000 Crystal structure of the aptamer minE-lysozyme complex 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N A GLY 4 A GLY 4 HELX_P A HIS 15 A HIS 15 1 1 12 A ASN 19 A ASN 19 HELX_P A TYR 23 A TYR 23 5 2 5 A SER 24 A SER 24 HELX_P A ASN 37 A ASN 37 1 3 14 A PRO 79 A PRO 79 HELX_P A LEU 84 A LEU 84 5 4 6 A ILE 88 A ILE 88 HELX_P A SER 100 A SER 100 1 5 13 A ASN 103 A ASN 103 HELX_P A ALA 107 A ALA 107 5 6 5 A TRP 108 A TRP 108 HELX_P A CYS 115 A CYS 115 1 7 8 A ASP 119 A ASP 119 HELX_P A ARG 125 A ARG 125 5 8 7 disulf 2.050 A CYS 6 A SG CYS 6 1_555 A CYS 127 A SG CYS 127 1_555 disulf 2.051 A CYS 30 A SG CYS 30 1_555 A CYS 115 A SG CYS 115 1_555 disulf 2.057 A CYS 64 A SG CYS 64 1_555 A CYS 80 A SG CYS 80 1_555 disulf 2.068 A CYS 76 A SG CYS 76 1_555 A CYS 94 A SG CYS 94 1_555 metalc 2.098 B A 17 B OP2 A 17 1_555 B MG 102 D MG MG 1_555 metalc 2.342 B G 21 B O6 G 21 1_555 B NA 101 C NA NA 1_555 metalc 2.630 B NA 101 C NA NA 1_555 B HOH 202 G O HOH 1_555 metalc 2.355 B NA 101 C NA NA 1_555 B HOH 206 G O HOH 1_555 metalc 2.408 B NA 101 C NA NA 1_555 B HOH 211 G O HOH 1_555 metalc 2.558 B NA 101 C NA NA 1_555 B HOH 212 G O HOH 1_555 metalc 2.146 B MG 102 D MG MG 1_555 B HOH 239 G O HOH 1_555 metalc 2.118 B MG 102 D MG MG 1_555 B HOH 259 G O HOH 1_555 metalc 2.346 B MG 102 D MG MG 1_555 B HOH 260 G O HOH 1_555 metalc 2.129 B MG 102 D MG MG 1_555 B HOH 261 G O HOH 1_555 metalc 2.112 B MG 102 D MG MG 1_555 B HOH 262 G O HOH 1_555 metalc 2.222 B MG 103 E MG MG 1_555 B HOH 245 G O HOH 1_555 metalc 2.140 B MG 103 E MG MG 1_555 B HOH 246 G O HOH 1_555 metalc 2.123 B MG 103 E MG MG 1_555 B HOH 247 G O HOH 1_555 metalc 2.122 B MG 103 E MG MG 1_555 B HOH 248 G O HOH 1_555 metalc 2.137 B MG 103 E MG MG 1_555 B HOH 277 G O HOH 1_555 hydrog WATSON-CRICK B G 1 B N1 G 1 1_555 B C 59 B N3 C 59 1_555 hydrog WATSON-CRICK B G 1 B N2 G 1 1_555 B C 59 B O2 C 59 1_555 hydrog WATSON-CRICK B G 1 B O6 G 1 1_555 B C 59 B N4 C 59 1_555 hydrog WATSON-CRICK B G 2 B N1 G 2 1_555 B C 58 B N3 C 58 1_555 hydrog WATSON-CRICK B G 2 B N2 G 2 1_555 B C 58 B O2 C 58 1_555 hydrog WATSON-CRICK B G 2 B O6 G 2 1_555 B C 58 B N4 C 58 1_555 hydrog WATSON-CRICK B G 3 B N1 G 3 1_555 B C 57 B N3 C 57 1_555 hydrog WATSON-CRICK B G 3 B N2 G 3 1_555 B C 57 B O2 C 57 1_555 hydrog WATSON-CRICK B G 3 B O6 G 3 1_555 B C 57 B N4 C 57 1_555 hydrog WATSON-CRICK B U 4 B N3 U 4 1_555 B A 56 B N1 A 56 1_555 hydrog WATSON-CRICK B U 4 B O4 U 4 1_555 B A 56 B N6 A 56 1_555 hydrog WATSON-CRICK B U 5 B N3 U 5 1_555 B A 55 B N1 A 55 1_555 hydrog WATSON-CRICK B U 5 B O4 U 5 1_555 B A 55 B N6 A 55 1_555 hydrog WATSON-CRICK B C 6 B N3 C 6 1_555 B G 54 B N1 G 54 1_555 hydrog WATSON-CRICK B C 6 B N4 C 6 1_555 B G 54 B O6 G 54 1_555 hydrog WATSON-CRICK B C 6 B O2 C 6 1_555 B G 54 B N2 G 54 1_555 hydrog A-C MISPAIR B A 7 B N1 A 7 1_555 B C 53 B N4 C 53 1_555 hydrog WATSON-CRICK B U 8 B N3 U 8 1_555 B A 52 B N1 A 52 1_555 hydrog WATSON-CRICK B U 8 B O4 U 8 1_555 B A 52 B N6 A 52 1_555 hydrog WATSON-CRICK B C 9 B N3 C 9 1_555 B G 51 B N1 G 51 1_555 hydrog WATSON-CRICK B C 9 B N4 C 9 1_555 B G 51 B O6 G 51 1_555 hydrog WATSON-CRICK B C 9 B O2 C 9 1_555 B G 51 B N2 G 51 1_555 hydrog WATSON-CRICK B A 10 B N1 A 10 1_555 B U 50 B N3 U 50 1_555 hydrog WATSON-CRICK B A 10 B N6 A 10 1_555 B U 50 B O4 U 50 1_555 hydrog TYPE_28_PAIR B G 11 B N1 G 11 1_555 B U 49 B O2 U 49 1_555 hydrog TYPE_28_PAIR B G 11 B O6 G 11 1_555 B U 49 B N3 U 49 1_555 hydrog WATSON-CRICK B G 12 B N1 G 12 1_555 B C 48 B N3 C 48 1_555 hydrog WATSON-CRICK B G 12 B N2 G 12 1_555 B C 48 B O2 C 48 1_555 hydrog WATSON-CRICK B G 12 B O6 G 12 1_555 B C 48 B N4 C 48 1_555 hydrog TYPE_8_PAIR B G 13 B N1 G 13 1_555 B A 47 B N1 A 47 1_555 hydrog TYPE_8_PAIR B G 13 B O6 G 13 1_555 B A 47 B N6 A 47 1_555 hydrog WATSON-CRICK B C 14 B N3 C 14 1_555 B G 46 B N1 G 46 1_555 hydrog WATSON-CRICK B C 14 B N4 C 14 1_555 B G 46 B O6 G 46 1_555 hydrog WATSON-CRICK B C 14 B O2 C 14 1_555 B G 46 B N2 G 46 1_555 hydrog WATSON-CRICK B U 15 B N3 U 15 1_555 B A 45 B N1 A 45 1_555 hydrog WATSON-CRICK B U 15 B O4 U 15 1_555 B A 45 B N6 A 45 1_555 hydrog REVERSED WATSON-CRICK B A 18 B N1 A 18 1_555 B U 22 B N3 U 22 1_555 hydrog REVERSED WATSON-CRICK B A 18 B N6 A 18 1_555 B U 22 B O2 U 22 1_555 hydrog G-U MISPAIR B G 19 B N2 G 19 1_555 B U 38 B O2 U 38 1_555 hydrog WATSON-CRICK B G 23 B N1 G 23 1_555 B C 44 B N3 C 44 1_555 hydrog WATSON-CRICK B G 23 B N2 G 23 1_555 B C 44 B O2 C 44 1_555 hydrog WATSON-CRICK B G 23 B O6 G 23 1_555 B C 44 B N4 C 44 1_555 hydrog WATSON-CRICK B C 24 B N3 C 24 1_555 B G 43 B N1 G 43 1_555 hydrog WATSON-CRICK B C 24 B N4 C 24 1_555 B G 43 B O6 G 43 1_555 hydrog WATSON-CRICK B C 24 B O2 C 24 1_555 B G 43 B N2 G 43 1_555 hydrog WATSON-CRICK B A 25 B N1 A 25 1_555 B U 42 B N3 U 42 1_555 hydrog WATSON-CRICK B A 25 B N6 A 25 1_555 B U 42 B O4 U 42 1_555 hydrog WATSON-CRICK B G 26 B N1 G 26 1_555 B C 41 B N3 C 41 1_555 hydrog WATSON-CRICK B G 26 B N2 G 26 1_555 B C 41 B O2 C 41 1_555 hydrog WATSON-CRICK B G 26 B O6 G 26 1_555 B C 41 B N4 C 41 1_555 hydrog WATSON-CRICK B G 28 B N1 G 28 1_555 B C 39 B N3 C 39 1_555 hydrog WATSON-CRICK B G 28 B N2 G 28 1_555 B C 39 B O2 C 39 1_555 hydrog WATSON-CRICK B G 28 B O6 G 28 1_555 B C 39 B N4 C 39 1_555 hydrog G-A MISPAIR B G 28 B N2 G 28 1_555 B A 40 B N7 A 40 1_555 hydrog WATSON-CRICK B U 30 B N3 U 30 1_555 B A 35 B N1 A 35 1_555 hydrog WATSON-CRICK B U 30 B O4 U 30 1_555 B A 35 B N6 A 35 1_555 hydrog A-C MISPAIR B A 31 B N6 A 31 1_555 B C 39 B O2 C 39 1_555 hydrog WATSON-CRICK B C 32 B N3 C 32 1_555 B G 36 B N1 G 36 1_555 hydrog WATSON-CRICK B C 32 B N4 C 32 1_555 B G 36 B O6 G 36 1_555 hydrog WATSON-CRICK B C 32 B O2 C 32 1_555 B G 36 B N2 G 36 1_555 HYDROLASE/RNA STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, protein-RNA complex, PSI-Biology, New York Structural Genomics Research Consortium, HYDROLASE-RNA complex LYSC_CHICK UNP 1 19 P00698 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 4M4O PDB 2 4M4O 19 147 4M4O 1 129 P00698 A 1 1 129 1 59 4M4O 1 59 4M4O B 2 1 59 3 anti-parallel anti-parallel A THR 43 A THR 43 A ARG 45 A ARG 45 A THR 51 A THR 51 A TYR 53 A TYR 53 A ILE 58 A ILE 58 A ASN 59 A ASN 59 BINDING SITE FOR RESIDUE NA B 101 B NA 101 Software 5 BINDING SITE FOR RESIDUE MG B 102 B MG 102 Software 7 BINDING SITE FOR RESIDUE MG B 103 B MG 103 Software 5 B G 21 B G 21 5 1_555 B HOH 202 G HOH 5 1_555 B HOH 206 G HOH 5 1_555 B HOH 211 G HOH 5 1_555 B HOH 212 G HOH 5 1_555 B U 15 B U 15 7 1_555 B A 17 B A 17 7 1_555 B HOH 239 G HOH 7 1_555 B HOH 259 G HOH 7 1_555 B HOH 260 G HOH 7 1_555 B HOH 261 G HOH 7 1_555 B HOH 262 G HOH 7 1_555 B HOH 245 G HOH 5 1_555 B HOH 246 G HOH 5 1_555 B HOH 247 G HOH 5 1_555 B HOH 248 G HOH 5 1_555 B HOH 277 G HOH 5 1_555 5 C 1 2 1