0.007081
0.000000
0.004503
-0.000000
0.032670
0.000000
0.000000
-0.000000
0.013194
0.000000
0.000000
0.000000
Malashkevich, V.N.
Padlan, F.C.
Toro, R.
Girvin, M.
Almo, S.C.
New York Structural Genomics Research Consortium (NYSGRC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
122.450
90.000
141.216
30.609
89.817
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
R
C
N
148
N
C
N
149
N
O
N
150
N
C
N
151
N
S
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
O
N
161
N
P
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
C
N
166
R
C
N
167
N
O
N
168
S
C
N
169
N
O
N
170
R
C
N
171
N
O
N
172
R
C
Y
173
N
N
Y
174
N
C
Y
175
N
N
Y
176
N
C
N
177
N
C
N
178
N
O
N
179
N
N
N
180
N
C
N
181
N
N
N
182
N
N
Y
183
N
C
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
N
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
S
C
N
220
N
C
N
221
N
O
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
O
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
O
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
Y
252
N
C
Y
253
N
N
Y
254
N
C
Y
255
N
C
Y
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
S
C
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
C
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
C
N
323
N
N
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
C
N
346
N
S
N
347
N
C
N
348
N
O
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
MG
N
361
N
NA
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
N
390
N
C
N
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
N
407
N
O
N
408
N
O
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
N
N
417
S
C
N
418
N
C
N
419
N
O
N
420
R
C
N
421
N
O
N
422
N
C
N
423
N
O
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
N
N
434
S
C
N
435
N
C
N
436
N
O
N
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
N
Y
442
N
C
Y
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
N
N
461
S
C
N
462
N
C
N
463
N
O
N
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
C
N
471
N
O
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
O
N
485
N
P
N
486
N
O
N
487
N
O
N
488
N
O
N
489
N
C
N
490
R
C
N
491
N
O
N
492
S
C
N
493
N
O
N
494
R
C
N
495
N
O
N
496
R
C
N
497
N
N
N
498
N
C
N
499
N
O
N
500
N
N
N
501
N
C
N
502
N
O
N
503
N
C
N
504
N
C
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
N
N
519
S
C
N
520
N
C
N
521
N
O
N
522
N
C
N
523
N
C
N
524
N
C
N
525
N
O
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
Y
182
N
sing
Y
183
N
sing
Y
184
N
doub
N
185
N
sing
Y
186
N
sing
N
187
N
sing
Y
188
N
doub
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
Y
255
N
sing
Y
256
N
doub
Y
257
N
doub
N
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
Y
363
N
doub
Y
364
N
sing
Y
365
N
sing
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
doub
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
Y
432
N
doub
Y
433
N
sing
Y
434
N
sing
N
435
N
sing
Y
436
N
doub
Y
437
N
sing
Y
438
N
sing
N
439
N
sing
Y
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
Y
460
N
doub
Y
461
N
sing
Y
462
N
sing
N
463
N
sing
Y
464
N
doub
N
465
N
sing
Y
466
N
doub
N
467
N
sing
Y
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
doub
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
doub
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
doub
N
504
N
sing
N
505
N
doub
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
doub
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
to be published
0353
Crystal structure of the aptamer minE-lysozyme complex
10.2210/pdb4m4o/pdb
pdb_00004m4o
100
1
CCD
2012-03-23
ADSC QUANTUM 315
SINGLE WAVELENGTH
x-ray
1
1.075
1.0
X29A
NSLS
1.075
SYNCHROTRON
NSLS BEAMLINE X29A
14331.160
Lysozyme C
3.2.1.17
1
man
polymer
18999.311
RNA (59-MER)
1
syn
polymer
22.990
SODIUM ION
1
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
18.015
water
220
nat
water
1,4-beta-N-acetylmuramidase C, Allergen Gal d IV
no
no
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
A
NYSGRC-032671
polypeptide(L)
no
no
GGGUUCAUCAGGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACUUGACGAACCC
GGGUUCAUCAGGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACUUGACGAACCC
B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
bantam,chickens
sample
LYZ, LYZ1
9031
Gallus gallus
562
Escherichia coli
BL21(DE3)CODON+RIL
plasmid
BC-PSGX3(BC)
1
2.46
49.95
VAPOR DIFFUSION, SITTING DROP
8.5
0.17M Sodium Acetate, 0.085M Tris-HCl, pH 8.5, 25.5% PEG-4000, 15% v/v glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
-12.280
1
19
B
1
B
59
-6.391
B_G1:C59_B
1
-15.149
0.148
0.327
-0.013
-6.380
1
19
B
2
B
58
-7.118
B_G2:C58_B
2
-9.715
-0.162
-0.032
-0.191
-14.480
1
19
B
3
B
57
2.879
B_G3:C57_B
3
-14.076
-1.202
-0.201
-0.145
-3.377
1
20
B
4
B
56
6.027
B_U4:A56_B
4
-14.761
-0.118
0.054
0.000
1.868
1
20
B
5
B
55
2.106
B_U5:A55_B
5
-9.359
0.091
0.115
-0.186
-2.335
1
19
B
6
B
54
1.795
B_C6:G54_B
6
-8.935
0.183
0.246
-0.097
5.273
B
7
B
53
3.286
B_A7:C53_B
7
-1.418
2.336
0.104
0.268
-0.472
1
20
B
8
B
52
2.356
B_U8:A52_B
8
-12.692
-0.002
-0.203
-0.181
2.192
1
19
B
9
B
51
3.828
B_C9:G51_B
9
-13.965
0.457
0.245
-0.338
-1.301
1
20
B
10
B
50
4.844
B_A10:U50_B
10
-17.115
-0.053
-0.005
-0.415
0.334
1
28
B
11
B
49
5.061
B_G11:U49_B
11
-15.397
-2.099
0.308
-0.474
-4.197
1
19
B
12
B
48
4.596
B_G12:C48_B
12
-17.009
-0.096
0.148
0.040
7.327
1
8
B
13
B
47
-14.303
B_G13:A47_B
13
-16.890
-0.151
-0.147
1.206
-3.354
1
19
B
14
B
46
5.935
B_C14:G46_B
14
-15.834
-0.032
0.419
-0.009
-5.297
1
20
B
15
B
45
9.258
B_U15:A45_B
15
-11.840
0.120
0.473
-0.017
2.524
1
19
B
23
B
44
1.891
B_G23:C44_B
16
-9.597
-0.372
0.342
0.085
2.028
1
19
B
24
B
43
-1.166
B_C24:G43_B
17
-12.479
0.053
0.219
-0.175
2.535
1
20
B
25
B
42
0.999
B_A25:U42_B
18
-6.961
0.458
-0.100
-0.147
-2.232
1
19
B
26
B
41
4.579
B_G26:C41_B
19
-9.232
-0.247
-0.311
-0.161
-22.377
1
19
B
28
B
39
0.727
B_G28:C39_B
20
2.966
-0.206
-0.907
-0.053
-0.443
1
19
B
36
B
32
-2.480
B_G36:C32_B
21
-15.730
-0.346
0.236
-0.190
-16.472
1
20
B
30
B
35
-5.050
B_U30:A35_B
22
4.723
-0.187
-0.043
-0.121
-4.778
2
21
B
18
B
22
172.096
B_A18:U22_B
23
-7.791
0.107
-0.136
1.427
15.233
B
19
B
38
-145.085
B_G19:U38_B
24
-4.737
-1.483
-0.249
-7.055
2.650
33.659
B
B
1
2
12.410
B
B
59
58
3.048
7.125
-0.510
-1.776
BB_G1G2:C58C59_BB
1
-3.082
5.368
32.777
-4.094
0.437
2.724
33.419
B
B
2
3
14.347
B
B
58
57
3.272
8.168
-0.154
-1.921
BB_G2G3:C57C58_BB
2
-1.566
2.751
32.396
-4.600
0.026
2.853
36.964
B
B
3
4
8.793
B
B
57
56
3.005
5.542
-0.449
-1.047
BB_G3U4:A56C57_BB
3
-4.586
7.277
36.281
-2.327
0.150
2.674
31.702
B
B
4
5
13.078
B
B
56
55
3.050
7.086
0.504
-1.346
BB_U4U5:A55A56_BB
4
-0.577
1.064
30.915
-3.620
-1.016
2.860
35.369
B
B
5
6
11.145
B
B
55
54
3.240
6.729
0.645
-1.921
BB_U5C6:G54A55_BB
5
2.005
-3.321
34.687
-4.096
-0.784
2.605
30.906
B
B
6
7
11.255
B
B
54
53
3.056
5.960
-1.315
-1.802
BB_C6A7:C53G54_BB
6
1.318
-2.488
30.312
-4.391
2.691
1.964
29.086
B
B
7
8
37.254
B
B
53
52
3.480
17.320
0.221
-1.352
BB_A7U8:A52C53_BB
7
6.433
-13.837
22.563
-6.274
0.890
2.328
32.191
B
B
8
9
21.155
B
B
52
51
3.158
11.482
0.738
-1.745
BB_U8C9:G51A52_BB
8
-1.006
1.854
30.107
-4.928
-1.487
2.472
31.840
B
B
9
10
19.899
B
B
51
50
3.171
10.705
-0.280
-1.508
BB_C9A10:U50G51_BB
9
2.250
-4.183
29.948
-4.489
0.876
1.854
23.048
B
B
10
11
22.898
B
B
50
49
2.956
8.871
0.556
-1.944
BB_A10G11:U49U50_BB
10
-3.929
10.141
20.931
-7.264
-2.454
3.176
44.933
B
B
11
12
6.613
B
B
49
48
3.311
5.045
-0.102
-1.084
BB_G11G12:C48U49_BB
11
0.327
-0.429
44.663
-1.872
0.163
2.770
20.632
B
B
12
13
4.353
B
B
48
47
3.050
1.555
-1.351
-1.664
BB_G12G13:A47C48_BB
12
2.045
-5.726
20.474
-5.253
4.571
2.992
36.761
B
B
13
14
7.803
B
B
47
46
3.343
4.898
1.188
-1.389
BB_G13C14:G46A47_BB
13
-4.008
6.385
36.230
-2.854
-2.417
2.812
37.276
B
B
14
15
12.103
B
B
46
45
3.133
7.684
0.652
-1.298
BB_C14U15:A45G46_BB
14
-0.024
0.038
36.503
-2.966
-1.022
1.841
10.045
B
B
15
23
28.657
B
B
45
44
2.939
4.735
1.775
-2.388
BB_U15G23:C44A45_BB
15
2.927
-17.711
8.364
-20.647
-5.805
3.106
36.636
B
B
23
24
3.892
B
B
44
43
3.216
2.445
-0.302
-1.561
BB_G23C24:G43C44_BB
16
0.226
-0.360
36.556
-2.808
0.510
2.723
34.116
B
B
24
25
13.754
B
B
43
42
3.173
7.992
0.274
-1.661
BB_C24A25:U42G43_BB
17
2.442
-4.202
33.106
-3.991
-0.112
3.114
25.410
B
B
25
26
8.977
B
B
42
41
3.449
3.931
0.855
-2.229
BB_A25G26:C41U42_BB
18
1.540
-3.518
25.062
-6.212
-1.495
6.739
82.898
B
B
26
28
13.622
B
B
41
39
7.086
17.864
1.234
-1.883
BB_G26G28:C39C41_BB
19
15.498
-11.817
80.044
-2.371
-0.109
-5.115
-167.035
B
B
28
36
61.518
B
B
39
32
-4.020
-120.381
1.186
-5.146
BB_G28G36:C32C39_BB
20
-95.827
-48.970
-120.091
1.649
1.346
4.328
162.553
B
B
36
30
32.918
B
B
32
35
4.163
63.985
2.450
-1.858
BB_G36U30:A35C32_BB
21
126.751
-65.209
124.490
-1.395
-0.338
2.896
-152.675
B
B
18
19
0.923
B
B
22
38
2.896
-1.794
-0.336
0.837
BB_A18G19:U38U22_BB
22
-3.769
-1.939
-152.657
-0.425
-0.185
New York Structural Genomics Research Consortium
NYSGRC
PSI:Biology
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-12-18
1
1
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2013-08-07
REL
REL
NA
SODIUM ION
MG
MAGNESIUM ION
HOH
water
1JKB
PDB
experimental model
NA
502
3
NA
NA
101
B
MG
500
4
MG
MG
102
B
MG
501
4
MG
MG
103
B
HOH
2
5
HOH
HOH
201
A
HOH
3
5
HOH
HOH
202
A
HOH
4
5
HOH
HOH
203
A
HOH
6
5
HOH
HOH
204
A
HOH
7
5
HOH
HOH
205
A
HOH
8
5
HOH
HOH
206
A
HOH
9
5
HOH
HOH
207
A
HOH
11
5
HOH
HOH
208
A
HOH
14
5
HOH
HOH
209
A
HOH
15
5
HOH
HOH
210
A
HOH
16
5
HOH
HOH
211
A
HOH
19
5
HOH
HOH
212
A
HOH
92
5
HOH
HOH
213
A
HOH
99
5
HOH
HOH
214
A
HOH
101
5
HOH
HOH
215
A
HOH
106
5
HOH
HOH
216
A
HOH
116
5
HOH
HOH
217
A
HOH
124
5
HOH
HOH
218
A
HOH
127
5
HOH
HOH
219
A
HOH
129
5
HOH
HOH
220
A
HOH
134
5
HOH
HOH
221
A
HOH
149
5
HOH
HOH
222
A
HOH
151
5
HOH
HOH
223
A
HOH
152
5
HOH
HOH
224
A
HOH
153
5
HOH
HOH
225
A
HOH
154
5
HOH
HOH
226
A
HOH
166
5
HOH
HOH
227
A
HOH
177
5
HOH
HOH
228
A
HOH
191
5
HOH
HOH
229
A
HOH
192
5
HOH
HOH
230
A
HOH
219
5
HOH
HOH
231
A
HOH
220
5
HOH
HOH
232
A
HOH
221
5
HOH
HOH
233
A
HOH
222
5
HOH
HOH
234
A
HOH
223
5
HOH
HOH
235
A
HOH
224
5
HOH
HOH
236
A
HOH
226
5
HOH
HOH
237
A
HOH
227
5
HOH
HOH
238
A
HOH
228
5
HOH
HOH
239
A
HOH
230
5
HOH
HOH
240
A
HOH
231
5
HOH
HOH
241
A
HOH
232
5
HOH
HOH
242
A
HOH
233
5
HOH
HOH
243
A
HOH
234
5
HOH
HOH
244
A
HOH
235
5
HOH
HOH
245
A
HOH
237
5
HOH
HOH
246
A
HOH
238
5
HOH
HOH
247
A
HOH
239
5
HOH
HOH
248
A
HOH
241
5
HOH
HOH
249
A
HOH
242
5
HOH
HOH
250
A
HOH
243
5
HOH
HOH
251
A
HOH
244
5
HOH
HOH
252
A
HOH
246
5
HOH
HOH
253
A
HOH
247
5
HOH
HOH
254
A
HOH
248
5
HOH
HOH
255
A
HOH
249
5
HOH
HOH
256
A
HOH
250
5
HOH
HOH
257
A
HOH
251
5
HOH
HOH
258
A
HOH
252
5
HOH
HOH
259
A
HOH
253
5
HOH
HOH
260
A
HOH
258
5
HOH
HOH
261
A
HOH
259
5
HOH
HOH
262
A
HOH
261
5
HOH
HOH
263
A
HOH
262
5
HOH
HOH
264
A
HOH
263
5
HOH
HOH
265
A
HOH
264
5
HOH
HOH
266
A
HOH
266
5
HOH
HOH
267
A
HOH
268
5
HOH
HOH
268
A
HOH
270
5
HOH
HOH
269
A
HOH
271
5
HOH
HOH
270
A
HOH
272
5
HOH
HOH
271
A
HOH
273
5
HOH
HOH
272
A
HOH
274
5
HOH
HOH
273
A
HOH
276
5
HOH
HOH
274
A
HOH
279
5
HOH
HOH
275
A
HOH
280
5
HOH
HOH
276
A
HOH
281
5
HOH
HOH
277
A
HOH
284
5
HOH
HOH
278
A
HOH
285
5
HOH
HOH
279
A
HOH
291
5
HOH
HOH
280
A
HOH
292
5
HOH
HOH
281
A
HOH
293
5
HOH
HOH
282
A
HOH
295
5
HOH
HOH
283
A
HOH
296
5
HOH
HOH
284
A
HOH
297
5
HOH
HOH
285
A
HOH
299
5
HOH
HOH
286
A
HOH
300
5
HOH
HOH
287
A
HOH
301
5
HOH
HOH
288
A
HOH
302
5
HOH
HOH
289
A
HOH
305
5
HOH
HOH
290
A
HOH
306
5
HOH
HOH
291
A
HOH
307
5
HOH
HOH
292
A
HOH
310
5
HOH
HOH
293
A
HOH
311
5
HOH
HOH
294
A
HOH
314
5
HOH
HOH
295
A
HOH
315
5
HOH
HOH
296
A
HOH
317
5
HOH
HOH
297
A
HOH
322
5
HOH
HOH
298
A
HOH
323
5
HOH
HOH
299
A
HOH
324
5
HOH
HOH
300
A
HOH
325
5
HOH
HOH
301
A
HOH
327
5
HOH
HOH
302
A
HOH
329
5
HOH
HOH
303
A
HOH
330
5
HOH
HOH
304
A
HOH
334
5
HOH
HOH
305
A
HOH
335
5
HOH
HOH
306
A
HOH
341
5
HOH
HOH
307
A
HOH
344
5
HOH
HOH
308
A
HOH
345
5
HOH
HOH
309
A
HOH
346
5
HOH
HOH
310
A
HOH
347
5
HOH
HOH
311
A
HOH
348
5
HOH
HOH
312
A
HOH
349
5
HOH
HOH
313
A
HOH
350
5
HOH
HOH
314
A
HOH
352
5
HOH
HOH
315
A
HOH
355
5
HOH
HOH
316
A
HOH
356
5
HOH
HOH
317
A
HOH
358
5
HOH
HOH
318
A
HOH
362
5
HOH
HOH
319
A
HOH
364
5
HOH
HOH
320
A
HOH
374
5
HOH
HOH
321
A
HOH
375
5
HOH
HOH
322
A
HOH
376
5
HOH
HOH
323
A
HOH
379
5
HOH
HOH
324
A
HOH
381
5
HOH
HOH
325
A
HOH
385
5
HOH
HOH
326
A
HOH
386
5
HOH
HOH
327
A
HOH
390
5
HOH
HOH
328
A
HOH
397
5
HOH
HOH
329
A
HOH
398
5
HOH
HOH
330
A
HOH
399
5
HOH
HOH
331
A
HOH
401
5
HOH
HOH
332
A
HOH
403
5
HOH
HOH
333
A
HOH
407
5
HOH
HOH
334
A
HOH
409
5
HOH
HOH
335
A
HOH
410
5
HOH
HOH
336
A
HOH
411
5
HOH
HOH
337
A
HOH
412
5
HOH
HOH
338
A
HOH
413
5
HOH
HOH
339
A
HOH
414
5
HOH
HOH
340
A
HOH
12
5
HOH
HOH
201
B
HOH
73
5
HOH
HOH
202
B
HOH
74
5
HOH
HOH
203
B
HOH
88
5
HOH
HOH
204
B
HOH
104
5
HOH
HOH
205
B
HOH
120
5
HOH
HOH
206
B
HOH
121
5
HOH
HOH
207
B
HOH
128
5
HOH
HOH
208
B
HOH
144
5
HOH
HOH
209
B
HOH
155
5
HOH
HOH
210
B
HOH
160
5
HOH
HOH
211
B
HOH
167
5
HOH
HOH
212
B
HOH
170
5
HOH
HOH
213
B
HOH
172
5
HOH
HOH
214
B
HOH
175
5
HOH
HOH
215
B
HOH
176
5
HOH
HOH
216
B
HOH
225
5
HOH
HOH
217
B
HOH
229
5
HOH
HOH
218
B
HOH
236
5
HOH
HOH
219
B
HOH
240
5
HOH
HOH
220
B
HOH
245
5
HOH
HOH
221
B
HOH
254
5
HOH
HOH
222
B
HOH
255
5
HOH
HOH
223
B
HOH
256
5
HOH
HOH
224
B
HOH
257
5
HOH
HOH
225
B
HOH
260
5
HOH
HOH
226
B
HOH
265
5
HOH
HOH
227
B
HOH
267
5
HOH
HOH
228
B
HOH
269
5
HOH
HOH
229
B
HOH
282
5
HOH
HOH
230
B
HOH
283
5
HOH
HOH
231
B
HOH
286
5
HOH
HOH
232
B
HOH
289
5
HOH
HOH
233
B
HOH
290
5
HOH
HOH
234
B
HOH
303
5
HOH
HOH
235
B
HOH
308
5
HOH
HOH
236
B
HOH
312
5
HOH
HOH
237
B
HOH
313
5
HOH
HOH
238
B
HOH
319
5
HOH
HOH
239
B
HOH
320
5
HOH
HOH
240
B
HOH
328
5
HOH
HOH
241
B
HOH
331
5
HOH
HOH
242
B
HOH
332
5
HOH
HOH
243
B
HOH
333
5
HOH
HOH
244
B
HOH
336
5
HOH
HOH
245
B
HOH
337
5
HOH
HOH
246
B
HOH
338
5
HOH
HOH
247
B
HOH
339
5
HOH
HOH
248
B
HOH
340
5
HOH
HOH
249
B
HOH
342
5
HOH
HOH
250
B
HOH
343
5
HOH
HOH
251
B
HOH
351
5
HOH
HOH
252
B
HOH
357
5
HOH
HOH
253
B
HOH
359
5
HOH
HOH
254
B
HOH
360
5
HOH
HOH
255
B
HOH
361
5
HOH
HOH
256
B
HOH
363
5
HOH
HOH
257
B
HOH
367
5
HOH
HOH
258
B
HOH
369
5
HOH
HOH
259
B
HOH
370
5
HOH
HOH
260
B
HOH
371
5
HOH
HOH
261
B
HOH
372
5
HOH
HOH
262
B
HOH
377
5
HOH
HOH
263
B
HOH
378
5
HOH
HOH
264
B
HOH
380
5
HOH
HOH
265
B
HOH
387
5
HOH
HOH
266
B
HOH
388
5
HOH
HOH
267
B
HOH
389
5
HOH
HOH
268
B
HOH
391
5
HOH
HOH
269
B
HOH
392
5
HOH
HOH
270
B
HOH
393
5
HOH
HOH
271
B
HOH
394
5
HOH
HOH
272
B
HOH
395
5
HOH
HOH
273
B
HOH
396
5
HOH
HOH
274
B
HOH
400
5
HOH
HOH
275
B
HOH
404
5
HOH
HOH
276
B
HOH
406
5
HOH
HOH
277
B
HOH
408
5
HOH
HOH
278
B
HOH
415
5
HOH
HOH
279
B
HOH
416
5
HOH
HOH
280
B
2.500
2.500
37.980
37.980
Phaser MODE: MR_AUTO
LYS
1
n
1
LYS
1
A
VAL
2
n
2
VAL
2
A
PHE
3
n
3
PHE
3
A
GLY
4
n
4
GLY
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ALA
10
n
10
ALA
10
A
ALA
11
n
11
ALA
11
A
MET
12
n
12
MET
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
HIS
15
n
15
HIS
15
A
GLY
16
n
16
GLY
16
A
LEU
17
n
17
LEU
17
A
ASP
18
n
18
ASP
18
A
ASN
19
n
19
ASN
19
A
TYR
20
n
20
TYR
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
TYR
23
n
23
TYR
23
A
SER
24
n
24
SER
24
A
LEU
25
n
25
LEU
25
A
GLY
26
n
26
GLY
26
A
ASN
27
n
27
ASN
27
A
TRP
28
n
28
TRP
28
A
VAL
29
n
29
VAL
29
A
CYS
30
n
30
CYS
30
A
ALA
31
n
31
ALA
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
PHE
34
n
34
PHE
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
ASN
37
n
37
ASN
37
A
PHE
38
n
38
PHE
38
A
ASN
39
n
39
ASN
39
A
THR
40
n
40
THR
40
A
GLN
41
n
41
GLN
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
ARG
45
n
45
ARG
45
A
ASN
46
n
46
ASN
46
A
THR
47
n
47
THR
47
A
ASP
48
n
48
ASP
48
A
GLY
49
n
49
GLY
49
A
SER
50
n
50
SER
50
A
THR
51
n
51
THR
51
A
ASP
52
n
52
ASP
52
A
TYR
53
n
53
TYR
53
A
GLY
54
n
54
GLY
54
A
ILE
55
n
55
ILE
55
A
LEU
56
n
56
LEU
56
A
GLN
57
n
57
GLN
57
A
ILE
58
n
58
ILE
58
A
ASN
59
n
59
ASN
59
A
SER
60
n
60
SER
60
A
ARG
61
n
61
ARG
61
A
TRP
62
n
62
TRP
62
A
TRP
63
n
63
TRP
63
A
CYS
64
n
64
CYS
64
A
ASN
65
n
65
ASN
65
A
ASP
66
n
66
ASP
66
A
GLY
67
n
67
GLY
67
A
ARG
68
n
68
ARG
68
A
THR
69
n
69
THR
69
A
PRO
70
n
70
PRO
70
A
GLY
71
n
71
GLY
71
A
SER
72
n
72
SER
72
A
ARG
73
n
73
ARG
73
A
ASN
74
n
74
ASN
74
A
LEU
75
n
75
LEU
75
A
CYS
76
n
76
CYS
76
A
ASN
77
n
77
ASN
77
A
ILE
78
n
78
ILE
78
A
PRO
79
n
79
PRO
79
A
CYS
80
n
80
CYS
80
A
SER
81
n
81
SER
81
A
ALA
82
n
82
ALA
82
A
LEU
83
n
83
LEU
83
A
LEU
84
n
84
LEU
84
A
SER
85
n
85
SER
85
A
SER
86
n
86
SER
86
A
ASP
87
n
87
ASP
87
A
ILE
88
n
88
ILE
88
A
THR
89
n
89
THR
89
A
ALA
90
n
90
ALA
90
A
SER
91
n
91
SER
91
A
VAL
92
n
92
VAL
92
A
ASN
93
n
93
ASN
93
A
CYS
94
n
94
CYS
94
A
ALA
95
n
95
ALA
95
A
LYS
96
n
96
LYS
96
A
LYS
97
n
97
LYS
97
A
ILE
98
n
98
ILE
98
A
VAL
99
n
99
VAL
99
A
SER
100
n
100
SER
100
A
ASP
101
n
101
ASP
101
A
GLY
102
n
102
GLY
102
A
ASN
103
n
103
ASN
103
A
GLY
104
n
104
GLY
104
A
MET
105
n
105
MET
105
A
ASN
106
n
106
ASN
106
A
ALA
107
n
107
ALA
107
A
TRP
108
n
108
TRP
108
A
VAL
109
n
109
VAL
109
A
ALA
110
n
110
ALA
110
A
TRP
111
n
111
TRP
111
A
ARG
112
n
112
ARG
112
A
ASN
113
n
113
ASN
113
A
ARG
114
n
114
ARG
114
A
CYS
115
n
115
CYS
115
A
LYS
116
n
116
LYS
116
A
GLY
117
n
117
GLY
117
A
THR
118
n
118
THR
118
A
ASP
119
n
119
ASP
119
A
VAL
120
n
120
VAL
120
A
GLN
121
n
121
GLN
121
A
ALA
122
n
122
ALA
122
A
TRP
123
n
123
TRP
123
A
ILE
124
n
124
ILE
124
A
ARG
125
n
125
ARG
125
A
GLY
126
n
126
GLY
126
A
CYS
127
n
127
CYS
127
A
ARG
128
n
128
ARG
128
A
LEU
129
n
129
LEU
129
A
G
1
n
1
G
1
B
G
2
n
2
G
2
B
G
3
n
3
G
3
B
U
4
n
4
U
4
B
U
5
n
5
U
5
B
C
6
n
6
C
6
B
A
7
n
7
A
7
B
U
8
n
8
U
8
B
C
9
n
9
C
9
B
A
10
n
10
A
10
B
G
11
n
11
G
11
B
G
12
n
12
G
12
B
G
13
n
13
G
13
B
C
14
n
14
C
14
B
U
15
n
15
U
15
B
A
16
n
16
A
16
B
A
17
n
17
A
17
B
A
18
n
18
A
18
B
G
19
n
19
G
19
B
A
20
n
20
A
20
B
G
21
n
21
G
21
B
U
22
n
22
U
22
B
G
23
n
23
G
23
B
C
24
n
24
C
24
B
A
25
n
25
A
25
B
G
26
n
26
G
26
B
A
27
n
27
A
27
B
G
28
n
28
G
28
B
U
29
n
29
U
29
B
U
30
n
30
U
30
B
A
31
n
31
A
31
B
C
32
n
32
C
32
B
U
33
n
33
U
33
B
U
34
n
34
U
34
B
A
35
n
35
A
35
B
G
36
n
36
G
36
B
U
37
n
37
U
37
B
U
38
n
38
U
38
B
C
39
n
39
C
39
B
A
40
n
40
A
40
B
C
41
n
41
C
41
B
U
42
n
42
U
42
B
G
43
n
43
G
43
B
C
44
n
44
C
44
B
A
45
n
45
A
45
B
G
46
n
46
G
46
B
A
47
n
47
A
47
B
C
48
n
48
C
48
B
U
49
n
49
U
49
B
U
50
n
50
U
50
B
G
51
n
51
G
51
B
A
52
n
52
A
52
B
C
53
n
53
C
53
B
G
54
n
54
G
54
B
A
55
n
55
A
55
B
A
56
n
56
A
56
B
C
57
n
57
C
57
B
C
58
n
58
C
58
B
C
59
n
59
C
59
B
0.5496
-0.0383
0.2409
0.8228
0.2682
1.5245
-0.0638
-0.0032
0.0051
-0.0318
0.0256
0.0781
-0.0068
0.0192
0.0382
0.0490
-0.0088
-0.0202
0.0035
0.0116
0.0542
refined
-11.9357
-27.2567
58.1134
X-RAY DIFFRACTION
1.2834
0.2848
-1.1013
0.0802
-0.2523
0.9505
-0.0242
0.0831
0.0829
-0.0251
0.0786
0.0072
0.0417
-0.0926
-0.0544
0.1093
-0.0705
-0.0226
0.2050
0.0138
0.0942
refined
3.3064
-19.3721
15.4927
X-RAY DIFFRACTION
A
1
A
129
X-RAY DIFFRACTION
1
B
1
B
59
X-RAY DIFFRACTION
2
B
101
B
103
X-RAY DIFFRACTION
2
author_defined_assembly
2
dimeric
B
A
17
B
OP2
A
17
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
239
G
O
HOH
1_555
90.0
B
A
17
B
OP2
A
17
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
259
G
O
HOH
1_555
92.5
B
HOH
239
G
O
HOH
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
259
G
O
HOH
1_555
165.3
B
A
17
B
OP2
A
17
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
260
G
O
HOH
1_555
95.7
B
HOH
239
G
O
HOH
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
260
G
O
HOH
1_555
85.6
B
HOH
259
G
O
HOH
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
260
G
O
HOH
1_555
79.7
B
A
17
B
OP2
A
17
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
261
G
O
HOH
1_555
173.5
B
HOH
239
G
O
HOH
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
261
G
O
HOH
1_555
84.6
B
HOH
259
G
O
HOH
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
261
G
O
HOH
1_555
91.9
B
HOH
260
G
O
HOH
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
261
G
O
HOH
1_555
80.3
B
A
17
B
OP2
A
17
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
262
G
O
HOH
1_555
99.1
B
HOH
239
G
O
HOH
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
262
G
O
HOH
1_555
90.7
B
HOH
259
G
O
HOH
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
262
G
O
HOH
1_555
103.2
B
HOH
260
G
O
HOH
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
262
G
O
HOH
1_555
164.7
B
HOH
261
G
O
HOH
1_555
B
MG
102
D
MG
MG
1_555
B
HOH
262
G
O
HOH
1_555
84.5
B
G
21
B
O6
G
21
1_555
B
NA
101
C
NA
NA
1_555
B
HOH
202
G
O
HOH
1_555
83.8
B
G
21
B
O6
G
21
1_555
B
NA
101
C
NA
NA
1_555
B
HOH
206
G
O
HOH
1_555
84.3
B
HOH
202
G
O
HOH
1_555
B
NA
101
C
NA
NA
1_555
B
HOH
206
G
O
HOH
1_555
164.8
B
G
21
B
O6
G
21
1_555
B
NA
101
C
NA
NA
1_555
B
HOH
211
G
O
HOH
1_555
83.7
B
HOH
202
G
O
HOH
1_555
B
NA
101
C
NA
NA
1_555
B
HOH
211
G
O
HOH
1_555
104.1
B
HOH
206
G
O
HOH
1_555
B
NA
101
C
NA
NA
1_555
B
HOH
211
G
O
HOH
1_555
83.9
B
G
21
B
O6
G
21
1_555
B
NA
101
C
NA
NA
1_555
B
HOH
212
G
O
HOH
1_555
93.4
B
HOH
202
G
O
HOH
1_555
B
NA
101
C
NA
NA
1_555
B
HOH
212
G
O
HOH
1_555
89.7
B
HOH
206
G
O
HOH
1_555
B
NA
101
C
NA
NA
1_555
B
HOH
212
G
O
HOH
1_555
81.6
B
HOH
211
G
O
HOH
1_555
B
NA
101
C
NA
NA
1_555
B
HOH
212
G
O
HOH
1_555
165.4
B
HOH
245
G
O
HOH
1_555
B
MG
103
E
MG
MG
1_555
B
HOH
246
G
O
HOH
1_555
90.4
B
HOH
245
G
O
HOH
1_555
B
MG
103
E
MG
MG
1_555
B
HOH
247
G
O
HOH
1_555
93.3
B
HOH
246
G
O
HOH
1_555
B
MG
103
E
MG
MG
1_555
B
HOH
247
G
O
HOH
1_555
80.8
B
HOH
245
G
O
HOH
1_555
B
MG
103
E
MG
MG
1_555
B
HOH
248
G
O
HOH
1_555
85.2
B
HOH
246
G
O
HOH
1_555
B
MG
103
E
MG
MG
1_555
B
HOH
248
G
O
HOH
1_555
89.7
B
HOH
247
G
O
HOH
1_555
B
MG
103
E
MG
MG
1_555
B
HOH
248
G
O
HOH
1_555
170.3
B
HOH
245
G
O
HOH
1_555
B
MG
103
E
MG
MG
1_555
B
HOH
277
G
O
HOH
1_555
91.4
B
HOH
246
G
O
HOH
1_555
B
MG
103
E
MG
MG
1_555
B
HOH
277
G
O
HOH
1_555
171.6
B
HOH
247
G
O
HOH
1_555
B
MG
103
E
MG
MG
1_555
B
HOH
277
G
O
HOH
1_555
107.4
B
HOH
248
G
O
HOH
1_555
B
MG
103
E
MG
MG
1_555
B
HOH
277
G
O
HOH
1_555
82.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
44
A
N
ASN
44
A
O
ASP
52
A
O
ASP
52
A
N
TYR
53
A
N
TYR
53
A
O
ILE
58
A
O
ILE
58
1
B
B
P
OP3
G
G
1
1
-0.120
0.012
1.607
1.487
N
1
B
B
O3'
P
A
A
16
17
-0.078
0.012
1.607
1.529
Y
1
B
B
O3'
P
C
U
32
33
-0.088
0.012
1.607
1.519
Y
1
A
LEU
84
-105.90
64.06
122.510
41.1093
17.480
24.6600
0.0000
8.8100
-11.2100
-0.0000
-13.4400
0.9620
0.9510
U VALUES : WITH TLS ADDED HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.2066
0.1809
0.1822
2.0000
37.9800
1128
22156
5.1000
98.9000
0.2040
0.1771
1.000
0.500
0.8844
4.9570
0.0740
0.0373
0.0308
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.0370
0.0310
0.8000
0.8000
1.2000
1JKB
MAXIMUM LIKELIHOOD
MASK
2.0000
37.9800
220
2485
3
1261
1001
0.008
0.015
2448
1.162
1.526
3606
6.194
5.000
132
36.770
22.745
51
14.045
15.000
170
16.985
15.000
12
0.089
0.200
382
0.008
0.020
1418
1.478
4.754
519
2.267
76.094
648
2.125
8.004
1929
0.2730
0.2150
2.0530
78
1421
1499
20
92.8200
2.000
50.000
4M4O
22172
0.056
1.304
1
12.000
3.100
98.800
0.348
2.000
2.030
1010
0.858
1
2.700
90.300
0.308
2.030
2.070
1043
0.966
1
2.900
96.500
0.281
2.070
2.110
1096
0.927
1
3.000
98.600
0.282
2.110
2.150
1093
0.949
1
3.100
99.800
0.238
2.150
2.200
1124
0.985
1
3.100
100.000
0.212
2.200
2.250
1100
1.033
1
3.200
99.800
0.172
2.250
2.310
1111
1.101
1
3.200
99.900
0.161
2.310
2.370
1124
1.084
1
3.200
100.000
0.143
2.370
2.440
1088
1.125
1
3.200
100.000
0.121
2.440
2.520
1127
1.204
1
3.200
99.900
0.106
2.520
2.610
1115
1.154
1
3.200
99.700
0.085
2.610
2.710
1117
1.193
1
3.200
99.900
0.076
2.710
2.840
1102
1.300
1
3.200
99.900
0.059
2.840
2.990
1129
1.318
1
3.200
99.600
0.049
2.990
3.170
1110
1.447
1
3.100
99.600
0.046
3.170
3.420
1138
1.724
1
3.200
99.600
0.048
3.420
3.760
1120
2.285
1
3.100
99.100
0.046
3.760
4.310
1139
2.521
1
3.100
99.500
0.033
4.310
5.430
1123
1.442
1
3.000
98.300
0.027
5.430
50.000
1163
1.255
1
3.100
95.400
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Tue Oct 18 19:46:39 2011 (svn )
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.3.0
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
CBASS
data reduction
HKL-2000
Crystal structure of the aptamer minE-lysozyme complex
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
A
GLY
4
A
GLY
4
HELX_P
A
HIS
15
A
HIS
15
1
1
12
A
ASN
19
A
ASN
19
HELX_P
A
TYR
23
A
TYR
23
5
2
5
A
SER
24
A
SER
24
HELX_P
A
ASN
37
A
ASN
37
1
3
14
A
PRO
79
A
PRO
79
HELX_P
A
LEU
84
A
LEU
84
5
4
6
A
ILE
88
A
ILE
88
HELX_P
A
SER
100
A
SER
100
1
5
13
A
ASN
103
A
ASN
103
HELX_P
A
ALA
107
A
ALA
107
5
6
5
A
TRP
108
A
TRP
108
HELX_P
A
CYS
115
A
CYS
115
1
7
8
A
ASP
119
A
ASP
119
HELX_P
A
ARG
125
A
ARG
125
5
8
7
disulf
2.050
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
127
A
SG
CYS
127
1_555
disulf
2.051
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
115
A
SG
CYS
115
1_555
disulf
2.057
A
CYS
64
A
SG
CYS
64
1_555
A
CYS
80
A
SG
CYS
80
1_555
disulf
2.068
A
CYS
76
A
SG
CYS
76
1_555
A
CYS
94
A
SG
CYS
94
1_555
metalc
2.098
B
A
17
B
OP2
A
17
1_555
B
MG
102
D
MG
MG
1_555
metalc
2.342
B
G
21
B
O6
G
21
1_555
B
NA
101
C
NA
NA
1_555
metalc
2.630
B
NA
101
C
NA
NA
1_555
B
HOH
202
G
O
HOH
1_555
metalc
2.355
B
NA
101
C
NA
NA
1_555
B
HOH
206
G
O
HOH
1_555
metalc
2.408
B
NA
101
C
NA
NA
1_555
B
HOH
211
G
O
HOH
1_555
metalc
2.558
B
NA
101
C
NA
NA
1_555
B
HOH
212
G
O
HOH
1_555
metalc
2.146
B
MG
102
D
MG
MG
1_555
B
HOH
239
G
O
HOH
1_555
metalc
2.118
B
MG
102
D
MG
MG
1_555
B
HOH
259
G
O
HOH
1_555
metalc
2.346
B
MG
102
D
MG
MG
1_555
B
HOH
260
G
O
HOH
1_555
metalc
2.129
B
MG
102
D
MG
MG
1_555
B
HOH
261
G
O
HOH
1_555
metalc
2.112
B
MG
102
D
MG
MG
1_555
B
HOH
262
G
O
HOH
1_555
metalc
2.222
B
MG
103
E
MG
MG
1_555
B
HOH
245
G
O
HOH
1_555
metalc
2.140
B
MG
103
E
MG
MG
1_555
B
HOH
246
G
O
HOH
1_555
metalc
2.123
B
MG
103
E
MG
MG
1_555
B
HOH
247
G
O
HOH
1_555
metalc
2.122
B
MG
103
E
MG
MG
1_555
B
HOH
248
G
O
HOH
1_555
metalc
2.137
B
MG
103
E
MG
MG
1_555
B
HOH
277
G
O
HOH
1_555
hydrog
WATSON-CRICK
B
G
1
B
N1
G
1
1_555
B
C
59
B
N3
C
59
1_555
hydrog
WATSON-CRICK
B
G
1
B
N2
G
1
1_555
B
C
59
B
O2
C
59
1_555
hydrog
WATSON-CRICK
B
G
1
B
O6
G
1
1_555
B
C
59
B
N4
C
59
1_555
hydrog
WATSON-CRICK
B
G
2
B
N1
G
2
1_555
B
C
58
B
N3
C
58
1_555
hydrog
WATSON-CRICK
B
G
2
B
N2
G
2
1_555
B
C
58
B
O2
C
58
1_555
hydrog
WATSON-CRICK
B
G
2
B
O6
G
2
1_555
B
C
58
B
N4
C
58
1_555
hydrog
WATSON-CRICK
B
G
3
B
N1
G
3
1_555
B
C
57
B
N3
C
57
1_555
hydrog
WATSON-CRICK
B
G
3
B
N2
G
3
1_555
B
C
57
B
O2
C
57
1_555
hydrog
WATSON-CRICK
B
G
3
B
O6
G
3
1_555
B
C
57
B
N4
C
57
1_555
hydrog
WATSON-CRICK
B
U
4
B
N3
U
4
1_555
B
A
56
B
N1
A
56
1_555
hydrog
WATSON-CRICK
B
U
4
B
O4
U
4
1_555
B
A
56
B
N6
A
56
1_555
hydrog
WATSON-CRICK
B
U
5
B
N3
U
5
1_555
B
A
55
B
N1
A
55
1_555
hydrog
WATSON-CRICK
B
U
5
B
O4
U
5
1_555
B
A
55
B
N6
A
55
1_555
hydrog
WATSON-CRICK
B
C
6
B
N3
C
6
1_555
B
G
54
B
N1
G
54
1_555
hydrog
WATSON-CRICK
B
C
6
B
N4
C
6
1_555
B
G
54
B
O6
G
54
1_555
hydrog
WATSON-CRICK
B
C
6
B
O2
C
6
1_555
B
G
54
B
N2
G
54
1_555
hydrog
A-C MISPAIR
B
A
7
B
N1
A
7
1_555
B
C
53
B
N4
C
53
1_555
hydrog
WATSON-CRICK
B
U
8
B
N3
U
8
1_555
B
A
52
B
N1
A
52
1_555
hydrog
WATSON-CRICK
B
U
8
B
O4
U
8
1_555
B
A
52
B
N6
A
52
1_555
hydrog
WATSON-CRICK
B
C
9
B
N3
C
9
1_555
B
G
51
B
N1
G
51
1_555
hydrog
WATSON-CRICK
B
C
9
B
N4
C
9
1_555
B
G
51
B
O6
G
51
1_555
hydrog
WATSON-CRICK
B
C
9
B
O2
C
9
1_555
B
G
51
B
N2
G
51
1_555
hydrog
WATSON-CRICK
B
A
10
B
N1
A
10
1_555
B
U
50
B
N3
U
50
1_555
hydrog
WATSON-CRICK
B
A
10
B
N6
A
10
1_555
B
U
50
B
O4
U
50
1_555
hydrog
TYPE_28_PAIR
B
G
11
B
N1
G
11
1_555
B
U
49
B
O2
U
49
1_555
hydrog
TYPE_28_PAIR
B
G
11
B
O6
G
11
1_555
B
U
49
B
N3
U
49
1_555
hydrog
WATSON-CRICK
B
G
12
B
N1
G
12
1_555
B
C
48
B
N3
C
48
1_555
hydrog
WATSON-CRICK
B
G
12
B
N2
G
12
1_555
B
C
48
B
O2
C
48
1_555
hydrog
WATSON-CRICK
B
G
12
B
O6
G
12
1_555
B
C
48
B
N4
C
48
1_555
hydrog
TYPE_8_PAIR
B
G
13
B
N1
G
13
1_555
B
A
47
B
N1
A
47
1_555
hydrog
TYPE_8_PAIR
B
G
13
B
O6
G
13
1_555
B
A
47
B
N6
A
47
1_555
hydrog
WATSON-CRICK
B
C
14
B
N3
C
14
1_555
B
G
46
B
N1
G
46
1_555
hydrog
WATSON-CRICK
B
C
14
B
N4
C
14
1_555
B
G
46
B
O6
G
46
1_555
hydrog
WATSON-CRICK
B
C
14
B
O2
C
14
1_555
B
G
46
B
N2
G
46
1_555
hydrog
WATSON-CRICK
B
U
15
B
N3
U
15
1_555
B
A
45
B
N1
A
45
1_555
hydrog
WATSON-CRICK
B
U
15
B
O4
U
15
1_555
B
A
45
B
N6
A
45
1_555
hydrog
REVERSED WATSON-CRICK
B
A
18
B
N1
A
18
1_555
B
U
22
B
N3
U
22
1_555
hydrog
REVERSED WATSON-CRICK
B
A
18
B
N6
A
18
1_555
B
U
22
B
O2
U
22
1_555
hydrog
G-U MISPAIR
B
G
19
B
N2
G
19
1_555
B
U
38
B
O2
U
38
1_555
hydrog
WATSON-CRICK
B
G
23
B
N1
G
23
1_555
B
C
44
B
N3
C
44
1_555
hydrog
WATSON-CRICK
B
G
23
B
N2
G
23
1_555
B
C
44
B
O2
C
44
1_555
hydrog
WATSON-CRICK
B
G
23
B
O6
G
23
1_555
B
C
44
B
N4
C
44
1_555
hydrog
WATSON-CRICK
B
C
24
B
N3
C
24
1_555
B
G
43
B
N1
G
43
1_555
hydrog
WATSON-CRICK
B
C
24
B
N4
C
24
1_555
B
G
43
B
O6
G
43
1_555
hydrog
WATSON-CRICK
B
C
24
B
O2
C
24
1_555
B
G
43
B
N2
G
43
1_555
hydrog
WATSON-CRICK
B
A
25
B
N1
A
25
1_555
B
U
42
B
N3
U
42
1_555
hydrog
WATSON-CRICK
B
A
25
B
N6
A
25
1_555
B
U
42
B
O4
U
42
1_555
hydrog
WATSON-CRICK
B
G
26
B
N1
G
26
1_555
B
C
41
B
N3
C
41
1_555
hydrog
WATSON-CRICK
B
G
26
B
N2
G
26
1_555
B
C
41
B
O2
C
41
1_555
hydrog
WATSON-CRICK
B
G
26
B
O6
G
26
1_555
B
C
41
B
N4
C
41
1_555
hydrog
WATSON-CRICK
B
G
28
B
N1
G
28
1_555
B
C
39
B
N3
C
39
1_555
hydrog
WATSON-CRICK
B
G
28
B
N2
G
28
1_555
B
C
39
B
O2
C
39
1_555
hydrog
WATSON-CRICK
B
G
28
B
O6
G
28
1_555
B
C
39
B
N4
C
39
1_555
hydrog
G-A MISPAIR
B
G
28
B
N2
G
28
1_555
B
A
40
B
N7
A
40
1_555
hydrog
WATSON-CRICK
B
U
30
B
N3
U
30
1_555
B
A
35
B
N1
A
35
1_555
hydrog
WATSON-CRICK
B
U
30
B
O4
U
30
1_555
B
A
35
B
N6
A
35
1_555
hydrog
A-C MISPAIR
B
A
31
B
N6
A
31
1_555
B
C
39
B
O2
C
39
1_555
hydrog
WATSON-CRICK
B
C
32
B
N3
C
32
1_555
B
G
36
B
N1
G
36
1_555
hydrog
WATSON-CRICK
B
C
32
B
N4
C
32
1_555
B
G
36
B
O6
G
36
1_555
hydrog
WATSON-CRICK
B
C
32
B
O2
C
32
1_555
B
G
36
B
N2
G
36
1_555
HYDROLASE/RNA
STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, protein-RNA complex, PSI-Biology, New York Structural Genomics Research Consortium, HYDROLASE-RNA complex
LYSC_CHICK
UNP
1
19
P00698
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC
SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL
4M4O
PDB
2
4M4O
19
147
4M4O
1
129
P00698
A
1
1
129
1
59
4M4O
1
59
4M4O
B
2
1
59
3
anti-parallel
anti-parallel
A
THR
43
A
THR
43
A
ARG
45
A
ARG
45
A
THR
51
A
THR
51
A
TYR
53
A
TYR
53
A
ILE
58
A
ILE
58
A
ASN
59
A
ASN
59
BINDING SITE FOR RESIDUE NA B 101
B
NA
101
Software
5
BINDING SITE FOR RESIDUE MG B 102
B
MG
102
Software
7
BINDING SITE FOR RESIDUE MG B 103
B
MG
103
Software
5
B
G
21
B
G
21
5
1_555
B
HOH
202
G
HOH
5
1_555
B
HOH
206
G
HOH
5
1_555
B
HOH
211
G
HOH
5
1_555
B
HOH
212
G
HOH
5
1_555
B
U
15
B
U
15
7
1_555
B
A
17
B
A
17
7
1_555
B
HOH
239
G
HOH
7
1_555
B
HOH
259
G
HOH
7
1_555
B
HOH
260
G
HOH
7
1_555
B
HOH
261
G
HOH
7
1_555
B
HOH
262
G
HOH
7
1_555
B
HOH
245
G
HOH
5
1_555
B
HOH
246
G
HOH
5
1_555
B
HOH
247
G
HOH
5
1_555
B
HOH
248
G
HOH
5
1_555
B
HOH
277
G
HOH
5
1_555
5
C 1 2 1