0.015170
0.000000
0.000000
0.000000
0.015170
0.000000
0.000000
0.000000
0.008957
0.00000
0.00000
0.00000
Xia, G.
Smith, C.D.
Muccio, D.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
65.920
65.920
111.650
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C21 H26 O2
310.430
(2E,6Z,8E)-3,7-dimethyl-8-[(4R)-4-methyl-3,4-dihydronaphthalen-1(2H)-ylidene]octa-2,6-dienoic acid
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
C
N
291
N
C
N
292
R
C
N
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
N
300
N
C
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
C
N
310
N
C
N
311
N
O
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
N
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
Z
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
E
doub
N
284
N
sing
N
285
E
doub
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
Y
291
N
doub
Y
292
N
sing
N
293
N
sing
Y
294
N
sing
Y
295
N
doub
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
UK
Bioorg.Med.Chem.
BMECEP
1200
0968-0896
22
178
185
10.1016/j.bmc.2013.11.039
24359708
Methyl-substituted conformationally constrained rexinoid agonists for the retinoid X receptors demonstrate improved efficacy for cancer therapy and prevention.
2014
10.2210/pdb4m8h/pdb
pdb_00004m8h
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2009-02-19
RIGAKU RAXIS IV
graphite
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.315
1.0
22-ID
APS
1.5418
1.315
ROTATING ANODE
OTHER
25897.021
Retinoic acid receptor RXR-alpha
HRXRALPHA-LBD, UNP RESIDUES 228-458
1
man
polymer
1405.710
Nuclear receptor coactivator 2
GRIP-1, UNP RESIDUES 686-696
1
syn
polymer
310.430
(2E,6Z,8E)-3,7-dimethyl-8-[(4R)-4-methyl-3,4-dihydronaphthalen-1(2H)-ylidene]octa-2,6-dienoic acid
1
syn
non-polymer
18.015
water
129
nat
water
Nuclear receptor subfamily 2 group B member 1, Retinoid X receptor alpha
NCoA-2, Class E basic helix-loop-helix protein 75, bHLHe75, Transcriptional intermediary factor 2, hTIF2
no
no
EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE
LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA
EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP
EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE
LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA
EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP
A
polypeptide(L)
no
no
KHKILHRLLQD
KHKILHRLLQD
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
P19793
sample
NR2B1, RXRA
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
1
2.26
45.70
VAPOR DIFFUSION, HANGING DROP
7.0
4-20% PEG4000, 4-16% GLYCEROL, 0.1M BIS-TRIS, PH7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K
295
database_2
pdbx_struct_assembly
pdbx_struct_assembly_gen
pdbx_struct_assembly_prop
pdbx_struct_oper_list
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Database references
Derived calculations
Data collection
Refinement description
1
0
2014-01-22
1
1
2022-08-17
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_assembly.details
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly_gen.oper_expression
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-08-13
REL
REL
R4M
(2E,6Z,8E)-3,7-dimethyl-8-[(4R)-4-methyl-3,4-dihydronaphthalen-1(2H)-ylidene]octa-2,6-dienoic acid
HOH
water
GRIP-1 from AnaSpec. Inc
9606
human
Homo sapiens
sample
3OAP
PDB
experimental model
R4M
500
3
R4M
R4M
500
A
HOH
501
4
HOH
HOH
601
A
HOH
502
4
HOH
HOH
602
A
HOH
503
4
HOH
HOH
603
A
HOH
504
4
HOH
HOH
604
A
HOH
505
4
HOH
HOH
605
A
HOH
506
4
HOH
HOH
606
A
HOH
507
4
HOH
HOH
607
A
HOH
508
4
HOH
HOH
608
A
HOH
509
4
HOH
HOH
609
A
HOH
510
4
HOH
HOH
610
A
HOH
511
4
HOH
HOH
611
A
HOH
512
4
HOH
HOH
612
A
HOH
513
4
HOH
HOH
613
A
HOH
515
4
HOH
HOH
614
A
HOH
516
4
HOH
HOH
615
A
HOH
517
4
HOH
HOH
616
A
HOH
518
4
HOH
HOH
617
A
HOH
519
4
HOH
HOH
618
A
HOH
520
4
HOH
HOH
619
A
HOH
521
4
HOH
HOH
620
A
HOH
522
4
HOH
HOH
621
A
HOH
523
4
HOH
HOH
622
A
HOH
524
4
HOH
HOH
623
A
HOH
525
4
HOH
HOH
624
A
HOH
526
4
HOH
HOH
625
A
HOH
528
4
HOH
HOH
626
A
HOH
529
4
HOH
HOH
627
A
HOH
530
4
HOH
HOH
628
A
HOH
531
4
HOH
HOH
629
A
HOH
532
4
HOH
HOH
630
A
HOH
533
4
HOH
HOH
631
A
HOH
534
4
HOH
HOH
632
A
HOH
535
4
HOH
HOH
633
A
HOH
536
4
HOH
HOH
634
A
HOH
538
4
HOH
HOH
635
A
HOH
539
4
HOH
HOH
636
A
HOH
540
4
HOH
HOH
637
A
HOH
541
4
HOH
HOH
638
A
HOH
542
4
HOH
HOH
639
A
HOH
543
4
HOH
HOH
640
A
HOH
544
4
HOH
HOH
641
A
HOH
545
4
HOH
HOH
642
A
HOH
546
4
HOH
HOH
643
A
HOH
547
4
HOH
HOH
644
A
HOH
548
4
HOH
HOH
645
A
HOH
549
4
HOH
HOH
646
A
HOH
554
4
HOH
HOH
647
A
HOH
555
4
HOH
HOH
648
A
HOH
556
4
HOH
HOH
649
A
HOH
557
4
HOH
HOH
650
A
HOH
558
4
HOH
HOH
651
A
HOH
559
4
HOH
HOH
652
A
HOH
561
4
HOH
HOH
653
A
HOH
562
4
HOH
HOH
654
A
HOH
563
4
HOH
HOH
655
A
HOH
564
4
HOH
HOH
656
A
HOH
565
4
HOH
HOH
657
A
HOH
566
4
HOH
HOH
658
A
HOH
567
4
HOH
HOH
659
A
HOH
568
4
HOH
HOH
660
A
HOH
569
4
HOH
HOH
661
A
HOH
570
4
HOH
HOH
662
A
HOH
571
4
HOH
HOH
663
A
HOH
572
4
HOH
HOH
664
A
HOH
573
4
HOH
HOH
665
A
HOH
574
4
HOH
HOH
666
A
HOH
575
4
HOH
HOH
667
A
HOH
576
4
HOH
HOH
668
A
HOH
577
4
HOH
HOH
669
A
HOH
578
4
HOH
HOH
670
A
HOH
580
4
HOH
HOH
671
A
HOH
581
4
HOH
HOH
672
A
HOH
582
4
HOH
HOH
673
A
HOH
583
4
HOH
HOH
674
A
HOH
584
4
HOH
HOH
675
A
HOH
585
4
HOH
HOH
676
A
HOH
586
4
HOH
HOH
677
A
HOH
587
4
HOH
HOH
678
A
HOH
588
4
HOH
HOH
679
A
HOH
589
4
HOH
HOH
680
A
HOH
590
4
HOH
HOH
681
A
HOH
591
4
HOH
HOH
682
A
HOH
592
4
HOH
HOH
683
A
HOH
593
4
HOH
HOH
684
A
HOH
594
4
HOH
HOH
685
A
HOH
595
4
HOH
HOH
686
A
HOH
596
4
HOH
HOH
687
A
HOH
597
4
HOH
HOH
688
A
HOH
598
4
HOH
HOH
689
A
HOH
599
4
HOH
HOH
690
A
HOH
600
4
HOH
HOH
691
A
HOH
601
4
HOH
HOH
692
A
HOH
602
4
HOH
HOH
693
A
HOH
603
4
HOH
HOH
694
A
HOH
605
4
HOH
HOH
695
A
HOH
606
4
HOH
HOH
696
A
HOH
607
4
HOH
HOH
697
A
HOH
608
4
HOH
HOH
698
A
HOH
609
4
HOH
HOH
699
A
HOH
610
4
HOH
HOH
700
A
HOH
611
4
HOH
HOH
701
A
HOH
612
4
HOH
HOH
702
A
HOH
614
4
HOH
HOH
703
A
HOH
615
4
HOH
HOH
704
A
HOH
616
4
HOH
HOH
705
A
HOH
617
4
HOH
HOH
706
A
HOH
618
4
HOH
HOH
707
A
HOH
619
4
HOH
HOH
708
A
HOH
620
4
HOH
HOH
709
A
HOH
621
4
HOH
HOH
710
A
HOH
622
4
HOH
HOH
711
A
HOH
623
4
HOH
HOH
712
A
HOH
624
4
HOH
HOH
713
A
HOH
628
4
HOH
HOH
714
A
HOH
629
4
HOH
HOH
715
A
HOH
630
4
HOH
HOH
716
A
HOH
631
4
HOH
HOH
717
A
HOH
632
4
HOH
HOH
718
A
HOH
633
4
HOH
HOH
719
A
HOH
635
4
HOH
HOH
720
A
HOH
636
4
HOH
HOH
721
A
HOH
637
4
HOH
HOH
722
A
HOH
638
4
HOH
HOH
723
A
HOH
639
4
HOH
HOH
724
A
HOH
640
4
HOH
HOH
725
A
HOH
641
4
HOH
HOH
726
A
HOH
642
4
HOH
HOH
727
A
HOH
643
4
HOH
HOH
728
A
HOH
514
4
HOH
HOH
701
B
GLU
228
n
1
GLU
228
A
ASP
229
n
2
ASP
229
A
MET
230
n
3
MET
230
A
PRO
231
n
4
PRO
231
A
VAL
232
n
5
VAL
232
A
GLU
233
n
6
GLU
233
A
ARG
234
n
7
ARG
234
A
ILE
235
n
8
ILE
235
A
LEU
236
n
9
LEU
236
A
GLU
237
n
10
GLU
237
A
ALA
238
n
11
ALA
238
A
GLU
239
n
12
GLU
239
A
LEU
240
n
13
LEU
240
A
ALA
241
n
14
ALA
241
A
VAL
242
n
15
VAL
242
A
GLU
243
n
16
GLU
243
A
PRO
244
n
17
PRO
244
A
n
18
245
A
n
19
246
A
n
20
247
A
n
21
248
A
n
22
249
A
n
23
250
A
n
24
251
A
n
25
252
A
n
26
253
A
n
27
254
A
n
28
255
A
n
29
256
A
n
30
257
A
n
31
258
A
n
32
259
A
n
33
260
A
n
34
261
A
ASN
262
n
35
ASN
262
A
ASP
263
n
36
ASP
263
A
PRO
264
n
37
PRO
264
A
VAL
265
n
38
VAL
265
A
THR
266
n
39
THR
266
A
ASN
267
n
40
ASN
267
A
ILE
268
n
41
ILE
268
A
CYS
269
n
42
CYS
269
A
GLN
270
n
43
GLN
270
A
ALA
271
n
44
ALA
271
A
ALA
272
n
45
ALA
272
A
ASP
273
n
46
ASP
273
A
LYS
274
n
47
LYS
274
A
GLN
275
n
48
GLN
275
A
LEU
276
n
49
LEU
276
A
PHE
277
n
50
PHE
277
A
THR
278
n
51
THR
278
A
LEU
279
n
52
LEU
279
A
VAL
280
n
53
VAL
280
A
GLU
281
n
54
GLU
281
A
TRP
282
n
55
TRP
282
A
ALA
283
n
56
ALA
283
A
LYS
284
n
57
LYS
284
A
ARG
285
n
58
ARG
285
A
ILE
286
n
59
ILE
286
A
PRO
287
n
60
PRO
287
A
HIS
288
n
61
HIS
288
A
PHE
289
n
62
PHE
289
A
SER
290
n
63
SER
290
A
GLU
291
n
64
GLU
291
A
LEU
292
n
65
LEU
292
A
PRO
293
n
66
PRO
293
A
LEU
294
n
67
LEU
294
A
ASP
295
n
68
ASP
295
A
ASP
296
n
69
ASP
296
A
GLN
297
n
70
GLN
297
A
VAL
298
n
71
VAL
298
A
ILE
299
n
72
ILE
299
A
LEU
300
n
73
LEU
300
A
LEU
301
n
74
LEU
301
A
ARG
302
n
75
ARG
302
A
ALA
303
n
76
ALA
303
A
GLY
304
n
77
GLY
304
A
TRP
305
n
78
TRP
305
A
ASN
306
n
79
ASN
306
A
GLU
307
n
80
GLU
307
A
LEU
308
n
81
LEU
308
A
LEU
309
n
82
LEU
309
A
ILE
310
n
83
ILE
310
A
ALA
311
n
84
ALA
311
A
SER
312
n
85
SER
312
A
PHE
313
n
86
PHE
313
A
SER
314
n
87
SER
314
A
HIS
315
n
88
HIS
315
A
ARG
316
n
89
ARG
316
A
SER
317
n
90
SER
317
A
ILE
318
n
91
ILE
318
A
ALA
319
n
92
ALA
319
A
VAL
320
n
93
VAL
320
A
LYS
321
n
94
LYS
321
A
ASP
322
n
95
ASP
322
A
GLY
323
n
96
GLY
323
A
ILE
324
n
97
ILE
324
A
LEU
325
n
98
LEU
325
A
LEU
326
n
99
LEU
326
A
ALA
327
n
100
ALA
327
A
THR
328
n
101
THR
328
A
GLY
329
n
102
GLY
329
A
LEU
330
n
103
LEU
330
A
HIS
331
n
104
HIS
331
A
VAL
332
n
105
VAL
332
A
HIS
333
n
106
HIS
333
A
ARG
334
n
107
ARG
334
A
ASN
335
n
108
ASN
335
A
SER
336
n
109
SER
336
A
ALA
337
n
110
ALA
337
A
HIS
338
n
111
HIS
338
A
SER
339
n
112
SER
339
A
ALA
340
n
113
ALA
340
A
GLY
341
n
114
GLY
341
A
VAL
342
n
115
VAL
342
A
GLY
343
n
116
GLY
343
A
ALA
344
n
117
ALA
344
A
ILE
345
n
118
ILE
345
A
PHE
346
n
119
PHE
346
A
ASP
347
n
120
ASP
347
A
ARG
348
n
121
ARG
348
A
VAL
349
n
122
VAL
349
A
LEU
350
n
123
LEU
350
A
THR
351
n
124
THR
351
A
GLU
352
n
125
GLU
352
A
LEU
353
n
126
LEU
353
A
VAL
354
n
127
VAL
354
A
SER
355
n
128
SER
355
A
LYS
356
n
129
LYS
356
A
MET
357
n
130
MET
357
A
ARG
358
n
131
ARG
358
A
ASP
359
n
132
ASP
359
A
MET
360
n
133
MET
360
A
GLN
361
n
134
GLN
361
A
MET
362
n
135
MET
362
A
ASP
363
n
136
ASP
363
A
LYS
364
n
137
LYS
364
A
THR
365
n
138
THR
365
A
GLU
366
n
139
GLU
366
A
LEU
367
n
140
LEU
367
A
GLY
368
n
141
GLY
368
A
CYS
369
n
142
CYS
369
A
LEU
370
n
143
LEU
370
A
ARG
371
n
144
ARG
371
A
ALA
372
n
145
ALA
372
A
ILE
373
n
146
ILE
373
A
VAL
374
n
147
VAL
374
A
LEU
375
n
148
LEU
375
A
PHE
376
n
149
PHE
376
A
ASN
377
n
150
ASN
377
A
PRO
378
n
151
PRO
378
A
ASP
379
n
152
ASP
379
A
SER
380
n
153
SER
380
A
LYS
381
n
154
LYS
381
A
GLY
382
n
155
GLY
382
A
LEU
383
n
156
LEU
383
A
SER
384
n
157
SER
384
A
ASN
385
n
158
ASN
385
A
PRO
386
n
159
PRO
386
A
ALA
387
n
160
ALA
387
A
GLU
388
n
161
GLU
388
A
VAL
389
n
162
VAL
389
A
GLU
390
n
163
GLU
390
A
ALA
391
n
164
ALA
391
A
LEU
392
n
165
LEU
392
A
ARG
393
n
166
ARG
393
A
GLU
394
n
167
GLU
394
A
LYS
395
n
168
LYS
395
A
VAL
396
n
169
VAL
396
A
TYR
397
n
170
TYR
397
A
ALA
398
n
171
ALA
398
A
SER
399
n
172
SER
399
A
LEU
400
n
173
LEU
400
A
GLU
401
n
174
GLU
401
A
ALA
402
n
175
ALA
402
A
TYR
403
n
176
TYR
403
A
CYS
404
n
177
CYS
404
A
LYS
405
n
178
LYS
405
A
HIS
406
n
179
HIS
406
A
LYS
407
n
180
LYS
407
A
TYR
408
n
181
TYR
408
A
PRO
409
n
182
PRO
409
A
GLU
410
n
183
GLU
410
A
GLN
411
n
184
GLN
411
A
PRO
412
n
185
PRO
412
A
GLY
413
n
186
GLY
413
A
ARG
414
n
187
ARG
414
A
PHE
415
n
188
PHE
415
A
ALA
416
n
189
ALA
416
A
LYS
417
n
190
LYS
417
A
LEU
418
n
191
LEU
418
A
LEU
419
n
192
LEU
419
A
LEU
420
n
193
LEU
420
A
ARG
421
n
194
ARG
421
A
LEU
422
n
195
LEU
422
A
PRO
423
n
196
PRO
423
A
ALA
424
n
197
ALA
424
A
LEU
425
n
198
LEU
425
A
ARG
426
n
199
ARG
426
A
SER
427
n
200
SER
427
A
ILE
428
n
201
ILE
428
A
GLY
429
n
202
GLY
429
A
LEU
430
n
203
LEU
430
A
LYS
431
n
204
LYS
431
A
CYS
432
n
205
CYS
432
A
LEU
433
n
206
LEU
433
A
GLU
434
n
207
GLU
434
A
HIS
435
n
208
HIS
435
A
LEU
436
n
209
LEU
436
A
PHE
437
n
210
PHE
437
A
PHE
438
n
211
PHE
438
A
PHE
439
n
212
PHE
439
A
LYS
440
n
213
LYS
440
A
LEU
441
n
214
LEU
441
A
ILE
442
n
215
ILE
442
A
GLY
443
n
216
GLY
443
A
ASP
444
n
217
ASP
444
A
THR
445
n
218
THR
445
A
PRO
446
n
219
PRO
446
A
ILE
447
n
220
ILE
447
A
ASP
448
n
221
ASP
448
A
THR
449
n
222
THR
449
A
PHE
450
n
223
PHE
450
A
LEU
451
n
224
LEU
451
A
MET
452
n
225
MET
452
A
GLU
453
n
226
GLU
453
A
MET
454
n
227
MET
454
A
LEU
455
n
228
LEU
455
A
GLU
456
n
229
GLU
456
A
ALA
457
n
230
ALA
457
A
PRO
458
n
231
PRO
458
A
LYS
686
n
1
LYS
686
B
HIS
687
n
2
HIS
687
B
LYS
688
n
3
LYS
688
B
ILE
689
n
4
ILE
689
B
LEU
690
n
5
LEU
690
B
HIS
691
n
6
HIS
691
B
ARG
692
n
7
ARG
692
B
LEU
693
n
8
LEU
693
B
LEU
694
n
9
LEU
694
B
GLN
695
n
10
GLN
695
B
ASP
696
n
11
ASP
696
B
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_775
-y+2,-x+2,-z+1/2
crystal symmetry operation
131.8400000000
131.8400000000
55.8250000000
A
N
ILE
324
A
N
ILE
97
A
O
VAL
332
A
O
VAL
105
1
A
O
PRO
458
A
O
PRO
231
1
Y
1
B
O
ASP
696
B
O
ASP
11
1
Y
1
A
LYS
245
A
LYS
18
1
Y
1
A
THR
246
A
THR
19
1
Y
1
A
GLU
247
A
GLU
20
1
Y
1
A
THR
248
A
THR
21
1
Y
1
A
TYR
249
A
TYR
22
1
Y
1
A
VAL
250
A
VAL
23
1
Y
1
A
GLU
251
A
GLU
24
1
Y
1
A
ALA
252
A
ALA
25
1
Y
1
A
ASN
253
A
ASN
26
1
Y
1
A
MET
254
A
MET
27
1
Y
1
A
GLY
255
A
GLY
28
1
Y
1
A
LEU
256
A
LEU
29
1
Y
1
A
ASN
257
A
ASN
30
1
Y
1
A
PRO
258
A
PRO
31
1
Y
1
A
SER
259
A
SER
32
1
Y
1
A
SER
260
A
SER
33
1
Y
1
A
PRO
261
A
PRO
34
1
Y
1
A
ASP
229
68.30
99.77
1
A
MET
230
-170.07
61.12
1
A
HIS
288
66.06
-8.69
1
A
LYS
321
-64.41
-91.61
1
A
LEU
353
-111.12
-71.12
1
A
LYS
405
69.14
-18.99
1
A
THR
445
65.97
100.42
1
A
GLU
456
-79.90
-162.25
CNS_TOPPAR:PROTEIN_REP.PARAM
DRGCNS-1FBY-A.PAR
CNS_TOPPAR:WATER_REP.PARAM
30.85
2.93400
0.00000
0.00000
2.93400
0.00000
-5.86800
0.265
0.228
0.265
0.228
2.20
29.30
1532
34390
12013
9.500
97.2
random
1
2.0
2.0
MOLECULAR REPLACEMENT
3OAP
Engh & Huber
66.66
2.20
29.30
129
1937
23
0
1785
0.006
1.14
2.28
457
30
2.20
29.30
4M8H
34390
12013
2.0
2.0
0.078
0.218
1
11.2000
2.86
91.80
2.20
2.28
1263
1
2.66
94.5
data collection
HKL-2000
refinement
CNS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
CNS
CRYSTAL STRUCTURE OF HUMAN RETINOID X RECEPTOR ALPHA-LIGAND BINDING DOMAIN COMPLEX WITH (R)4-METHYL 9cUAB30 AND COACTIVATOR PEPTIDE GRIP-1
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
PRO
231
A
PRO
4
HELX_P
A
GLU
243
A
GLU
16
1
1
13
A
ASP
263
A
ASP
36
HELX_P
A
ARG
285
A
ARG
58
1
2
23
A
HIS
288
A
HIS
61
HELX_P
A
LEU
292
A
LEU
65
5
3
5
A
PRO
293
A
PRO
66
HELX_P
A
SER
317
A
SER
90
1
4
25
A
ARG
334
A
ARG
107
HELX_P
A
SER
339
A
SER
112
1
5
6
A
VAL
342
A
VAL
115
HELX_P
A
LEU
353
A
LEU
126
1
6
12
A
LEU
353
A
LEU
126
HELX_P
A
GLN
361
A
GLN
134
1
7
9
A
ASP
363
A
ASP
136
HELX_P
A
PHE
376
A
PHE
149
1
8
14
A
ASN
385
A
ASN
158
HELX_P
A
CYS
404
A
CYS
177
1
9
20
A
GLY
413
A
GLY
186
HELX_P
A
LEU
420
A
LEU
193
1
10
8
A
ARG
421
A
ARG
194
HELX_P
A
GLY
443
A
GLY
216
1
11
23
A
ASP
448
A
ASP
221
HELX_P
A
LEU
455
A
LEU
228
1
12
8
B
HIS
687
B
HIS
2
HELX_P
B
ASP
696
B
ASP
11
1
13
10
TRANSCRIPTION
ANTIPARALLEL SANDWICH, LIGAND BINDING, COACTIVATOR BINDING, DIMERIZATION, ACTIVATION FUNCTION, TRANSCRIPTION, nuclear receptors, ligand binding domain, ligand binding pocket, coactivator binding site, cancer, (R)4-Methyl UAB30 [(2E, 4E, 6Z, 8E)-8-[(4'R)methyl-3', 4'-dihydro-1'(2'H)-naphthalen-1'-ylidene]-3, 7-dimethyl-2, 4, 6-octatrienoic Acid]
A
ALA
457
A
ALA
230
1
A
PRO
458
A
PRO
231
-0.15
RXRA_HUMAN
UNP
1
228
P19793
EDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNE
LLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA
EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP
NCOA2_HUMAN
UNP
2
686
Q15596
KHKILHRLLQD
228
458
4M8H
228
458
P19793
A
1
1
231
686
696
4M8H
686
696
Q15596
B
2
1
11
2
anti-parallel
A
GLY
323
A
GLY
96
A
LEU
325
A
LEU
98
A
HIS
331
A
HIS
104
A
HIS
333
A
HIS
106
BINDING SITE FOR RESIDUE R4M A 500
A
R4M
500
Software
10
A
ILE
268
A
ILE
41
10
1_555
A
ALA
271
A
ALA
44
10
1_555
A
GLN
275
A
GLN
48
10
1_555
A
TRP
305
A
TRP
78
10
1_555
A
PHE
313
A
PHE
86
10
1_555
A
ARG
316
A
ARG
89
10
1_555
A
ALA
327
A
ALA
100
10
1_555
A
PHE
346
A
PHE
119
10
1_555
A
PHE
439
A
PHE
212
10
1_555
A
HOH
612
D
HOH
10
1_555
96
P 43 21 2