0.018406
0.000000
0.000000
0.000000
0.006844
0.000000
0.000000
0.000000
0.021289
0.00000
0.00000
0.00000
Singh, I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
54.329
146.107
46.972
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
Y
100
N
N
Y
101
N
C
Y
102
N
N
Y
103
N
C
Y
104
N
C
N
105
N
N
Y
106
N
N
Y
107
N
C
Y
108
N
N
Y
109
N
C
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
O
N
132
S
C
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
N
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
C
N
141
N
N
N
142
N
C
N
143
N
C
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
P
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
C
N
164
R
C
N
165
N
O
N
166
S
C
N
167
N
O
N
168
N
C
N
169
R
C
Y
170
N
N
Y
171
N
C
Y
172
N
N
Y
173
N
C
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
N
N
179
N
N
Y
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
P
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
C
N
201
R
C
N
202
N
O
N
203
S
C
N
204
N
O
N
205
N
C
N
206
R
C
N
207
N
N
N
208
N
C
N
209
N
O
N
210
N
N
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
C
N
232
N
O
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
N
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
O
N
269
N
O
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
N
C
N
282
N
C
N
283
N
O
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
Y
295
N
C
Y
296
N
N
Y
297
N
C
Y
298
N
C
Y
299
N
N
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
S
C
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
N
341
N
C
N
342
N
C
N
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
N
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
C
N
389
N
S
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
N
431
N
C
N
432
N
C
N
433
N
O
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
N
N
444
S
C
N
445
N
C
N
446
N
O
N
447
N
C
N
448
N
O
N
449
N
O
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
R
C
N
462
N
O
N
463
N
C
N
464
N
O
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
N
N
475
S
C
N
476
N
C
N
477
N
O
N
478
N
C
Y
479
N
C
Y
480
N
C
Y
481
N
C
Y
482
N
N
Y
483
N
C
Y
484
N
C
Y
485
N
C
Y
486
N
C
Y
487
N
C
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
N
N
502
S
C
N
503
N
C
N
504
N
O
N
505
N
C
Y
506
N
C
Y
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
C
N
512
N
O
N
513
N
O
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
N
N
526
S
C
N
527
N
C
N
528
N
O
N
529
N
C
N
530
N
C
N
531
N
C
N
532
N
O
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
Y
106
N
sing
Y
107
N
sing
Y
108
N
doub
N
109
N
sing
Y
110
N
sing
Y
111
N
sing
Y
112
N
doub
N
113
N
sing
Y
114
N
doub
N
115
N
sing
N
116
N
sing
Y
117
N
sing
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
sing
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
doub
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
sing
Y
299
N
doub
Y
300
N
doub
N
301
N
sing
Y
302
N
sing
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
doub
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
doub
N
413
N
sing
Y
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
doub
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
doub
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
Y
475
N
doub
Y
476
N
sing
Y
477
N
sing
N
478
N
sing
Y
479
N
doub
Y
480
N
sing
Y
481
N
sing
N
482
N
sing
Y
483
N
sing
Y
484
N
doub
N
485
N
sing
Y
486
N
doub
N
487
N
sing
Y
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
doub
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
Y
503
N
doub
Y
504
N
sing
Y
505
N
sing
N
506
N
sing
Y
507
N
doub
N
508
N
sing
Y
509
N
doub
N
510
N
sing
Y
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
doub
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
70
752
759
10.1107/S1399004713032987
24598744
The structure of an authentic spore photoproduct lesion in DNA suggests a basis for recognition.
2014
10.2210/pdb4m95/pdb
pdb_00004m95
CELL PARAMETER MISMATCH BETWEEN PDB AND SF FILE
108
1
CCD
2013-02-27
ADSC QUANTUM 315
Rosenbaum-Rock high resolution double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.97903
1.0
19-ID
APS
0.97903
SYNCHROTRON
APS BEAMLINE 19-ID
29347.754
Gag-Pol polyprotein
3.4.23.-, 2.7.7.49, 2.7.7.7, 3.1.26.4
UNP residues 683-937
1
man
polymer
2401.604
5' d(ATCCGTTA) 3'
1
syn
polymer
2450.642
5' d(TAACGGAT) 3'
1
syn
polymer
62.068
1,2-ETHANEDIOL
3
syn
non-polymer
18.015
water
187
nat
water
Pr180gag-pol, Matrix protein p15, MA, RNA-binding phosphoprotein p12, pp12, Capsid protein p30, CA, Nucleocapsid protein p10, NC-pol, Protease p14, PR, Reverse transcriptase/ribonuclease H p80, RT, Integrase p46, IN
no
no
GSHMTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLL
PVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKA
QICQKQVKYLGYLLKEGQR
GSHMTWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLL
PVKKPGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGI
SGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKA
QICQKQVKYLGYLLKEGQR
A
polypeptide(L)
no
no
(DA)(DT)(DC)(DC)(DG)(DT)(DT)(DA)
ATCCGTTA
B
polydeoxyribonucleotide
no
no
(DT)(DA)(DA)(DC)(DG)(DG)(DA)(DT)
TAACGGAT
G
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
MoMLV
sample
gag-pol, Reverse transcriptase
928306
Moloney murine leukemia virus isolate Shinnick
562
Escherichia coli
plasmid
pET15b
1
2.76
55.42
VAPOR DIFFUSION, HANGING DROP
6.5
9% PEG 4000, 5mM Magnesium acetate, 50mM N-(2-acetamido)iminodiacetic acid, pH 6.5, vapor diffusion, hanging drop, temperature 293.15K
293.15
-17.773
1
20
B
1
G
16
-0.640
B_DA1:DT16_G
1
2.827
0.326
-0.189
-0.165
-6.227
1
20
B
2
G
15
6.027
B_DT2:DA15_G
2
-9.681
-0.136
0.453
-0.276
-4.122
1
19
B
3
G
14
-1.409
B_DC3:DG14_G
3
-14.297
0.280
-0.002
-0.249
6.178
1
19
B
4
G
13
4.285
B_DC4:DG13_G
4
-10.765
-0.405
-0.050
0.050
6.274
1
19
B
5
G
12
-1.501
B_DG5:DC12_G
5
-12.030
-0.238
0.373
-0.221
0.395
1
20
B
6
G
11
5.303
B_DT6:DA11_G
6
-14.265
0.139
0.429
-0.062
4.470
1
20
B
7
G
10
6.259
B_DT7:DA10_G
7
-6.010
-0.065
0.221
-0.148
-5.591
1
20
B
8
G
9
4.477
B_DA8:DT9_G
8
0.981
-0.390
0.213
-0.212
2.705
28.258
B
B
1
2
14.832
G
G
16
15
3.124
7.112
0.616
-0.504
BB_DA1DT2:DA15DT16_GG
1
-5.974
12.458
26.717
-2.547
-2.536
3.137
37.984
B
B
2
3
-4.439
G
G
15
14
3.200
-2.875
-0.339
-0.519
BB_DT2DC3:DG14DA15_GG
2
6.166
-9.522
37.392
-0.440
1.289
2.816
24.627
B
B
3
4
20.249
G
G
14
13
2.994
8.463
0.097
-0.007
BB_DC3DC4:DG13DG14_GG
3
1.098
-2.628
23.123
-2.398
0.082
3.350
39.663
B
B
4
5
4.445
G
G
13
12
3.291
3.006
-0.333
0.710
BB_DC4DG5:DC12DG13_GG
4
-5.148
7.614
39.230
0.689
-0.122
3.425
35.455
B
B
5
6
-2.321
G
G
12
11
3.402
-1.413
0.024
-0.665
BB_DG5DT6:DA11DC12_GG
5
0.573
-0.942
35.424
-0.875
0.048
3.146
36.009
B
B
6
7
-5.835
G
G
11
10
3.101
-3.600
-0.018
-0.661
BB_DT6DT7:DA10DA11_GG
6
1.841
-2.985
35.789
-0.579
0.279
3.449
37.396
B
B
7
8
-7.810
G
G
10
9
3.436
-4.992
0.402
-0.222
BB_DT7DA8:DT9DA10_GG
7
1.520
-2.378
37.043
0.348
-0.415
software
software
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Refinement description
Data collection
Refinement description
Data collection
Database references
Derived calculations
1
0
2014-03-12
1
1
2014-04-02
1
2
2017-11-15
1
3
2019-07-17
1
4
2024-02-28
_software.name
_software.contact_author
_software.contact_author_email
_software.language
_software.location
_software.name
_software.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-08-14
REL
REL
EDO
1,2-ETHANEDIOL
HOH
water
Polydeoxyribonucleotide
sample
Polydeoxyribonucleotide
sample
EDO
301
4
EDO
EDO
301
A
EDO
302
4
EDO
EDO
302
A
EDO
303
4
EDO
EDO
303
A
HOH
401
5
HOH
HOH
401
A
HOH
402
5
HOH
HOH
402
A
HOH
403
5
HOH
HOH
403
A
HOH
404
5
HOH
HOH
404
A
HOH
405
5
HOH
HOH
405
A
HOH
406
5
HOH
HOH
406
A
HOH
407
5
HOH
HOH
407
A
HOH
408
5
HOH
HOH
408
A
HOH
409
5
HOH
HOH
409
A
HOH
410
5
HOH
HOH
410
A
HOH
411
5
HOH
HOH
411
A
HOH
412
5
HOH
HOH
412
A
HOH
413
5
HOH
HOH
413
A
HOH
414
5
HOH
HOH
414
A
HOH
415
5
HOH
HOH
415
A
HOH
416
5
HOH
HOH
416
A
HOH
417
5
HOH
HOH
417
A
HOH
418
5
HOH
HOH
418
A
HOH
419
5
HOH
HOH
419
A
HOH
420
5
HOH
HOH
420
A
HOH
421
5
HOH
HOH
421
A
HOH
422
5
HOH
HOH
422
A
HOH
423
5
HOH
HOH
423
A
HOH
424
5
HOH
HOH
424
A
HOH
425
5
HOH
HOH
425
A
HOH
426
5
HOH
HOH
426
A
HOH
427
5
HOH
HOH
427
A
HOH
428
5
HOH
HOH
428
A
HOH
429
5
HOH
HOH
429
A
HOH
430
5
HOH
HOH
430
A
HOH
431
5
HOH
HOH
431
A
HOH
432
5
HOH
HOH
432
A
HOH
433
5
HOH
HOH
433
A
HOH
434
5
HOH
HOH
434
A
HOH
435
5
HOH
HOH
435
A
HOH
436
5
HOH
HOH
436
A
HOH
437
5
HOH
HOH
437
A
HOH
438
5
HOH
HOH
438
A
HOH
439
5
HOH
HOH
439
A
HOH
440
5
HOH
HOH
440
A
HOH
441
5
HOH
HOH
441
A
HOH
442
5
HOH
HOH
442
A
HOH
443
5
HOH
HOH
443
A
HOH
444
5
HOH
HOH
444
A
HOH
445
5
HOH
HOH
445
A
HOH
446
5
HOH
HOH
446
A
HOH
447
5
HOH
HOH
447
A
HOH
448
5
HOH
HOH
448
A
HOH
449
5
HOH
HOH
449
A
HOH
450
5
HOH
HOH
450
A
HOH
451
5
HOH
HOH
451
A
HOH
452
5
HOH
HOH
452
A
HOH
453
5
HOH
HOH
453
A
HOH
454
5
HOH
HOH
454
A
HOH
455
5
HOH
HOH
455
A
HOH
456
5
HOH
HOH
456
A
HOH
457
5
HOH
HOH
457
A
HOH
458
5
HOH
HOH
458
A
HOH
459
5
HOH
HOH
459
A
HOH
460
5
HOH
HOH
460
A
HOH
461
5
HOH
HOH
461
A
HOH
462
5
HOH
HOH
462
A
HOH
463
5
HOH
HOH
463
A
HOH
464
5
HOH
HOH
464
A
HOH
465
5
HOH
HOH
465
A
HOH
466
5
HOH
HOH
466
A
HOH
467
5
HOH
HOH
467
A
HOH
468
5
HOH
HOH
468
A
HOH
469
5
HOH
HOH
469
A
HOH
470
5
HOH
HOH
470
A
HOH
471
5
HOH
HOH
471
A
HOH
472
5
HOH
HOH
472
A
HOH
473
5
HOH
HOH
473
A
HOH
474
5
HOH
HOH
474
A
HOH
475
5
HOH
HOH
475
A
HOH
476
5
HOH
HOH
476
A
HOH
477
5
HOH
HOH
477
A
HOH
478
5
HOH
HOH
478
A
HOH
479
5
HOH
HOH
479
A
HOH
480
5
HOH
HOH
480
A
HOH
481
5
HOH
HOH
481
A
HOH
482
5
HOH
HOH
482
A
HOH
483
5
HOH
HOH
483
A
HOH
484
5
HOH
HOH
484
A
HOH
485
5
HOH
HOH
485
A
HOH
486
5
HOH
HOH
486
A
HOH
487
5
HOH
HOH
487
A
HOH
488
5
HOH
HOH
488
A
HOH
489
5
HOH
HOH
489
A
HOH
490
5
HOH
HOH
490
A
HOH
491
5
HOH
HOH
491
A
HOH
492
5
HOH
HOH
492
A
HOH
493
5
HOH
HOH
493
A
HOH
494
5
HOH
HOH
494
A
HOH
495
5
HOH
HOH
495
A
HOH
496
5
HOH
HOH
496
A
HOH
497
5
HOH
HOH
497
A
HOH
498
5
HOH
HOH
498
A
HOH
499
5
HOH
HOH
499
A
HOH
500
5
HOH
HOH
500
A
HOH
501
5
HOH
HOH
501
A
HOH
502
5
HOH
HOH
502
A
HOH
503
5
HOH
HOH
503
A
HOH
504
5
HOH
HOH
504
A
HOH
505
5
HOH
HOH
505
A
HOH
506
5
HOH
HOH
506
A
HOH
507
5
HOH
HOH
507
A
HOH
508
5
HOH
HOH
508
A
HOH
509
5
HOH
HOH
509
A
HOH
510
5
HOH
HOH
510
A
HOH
511
5
HOH
HOH
511
A
HOH
512
5
HOH
HOH
512
A
HOH
513
5
HOH
HOH
513
A
HOH
514
5
HOH
HOH
514
A
HOH
515
5
HOH
HOH
515
A
HOH
516
5
HOH
HOH
516
A
HOH
517
5
HOH
HOH
517
A
HOH
518
5
HOH
HOH
518
A
HOH
519
5
HOH
HOH
519
A
HOH
520
5
HOH
HOH
520
A
HOH
521
5
HOH
HOH
521
A
HOH
522
5
HOH
HOH
522
A
HOH
523
5
HOH
HOH
523
A
HOH
524
5
HOH
HOH
524
A
HOH
525
5
HOH
HOH
525
A
HOH
526
5
HOH
HOH
526
A
HOH
527
5
HOH
HOH
527
A
HOH
528
5
HOH
HOH
528
A
HOH
529
5
HOH
HOH
529
A
HOH
530
5
HOH
HOH
530
A
HOH
531
5
HOH
HOH
531
A
HOH
532
5
HOH
HOH
532
A
HOH
533
5
HOH
HOH
533
A
HOH
534
5
HOH
HOH
534
A
HOH
535
5
HOH
HOH
535
A
HOH
536
5
HOH
HOH
536
A
HOH
537
5
HOH
HOH
537
A
HOH
538
5
HOH
HOH
538
A
HOH
539
5
HOH
HOH
539
A
HOH
540
5
HOH
HOH
540
A
HOH
541
5
HOH
HOH
541
A
HOH
542
5
HOH
HOH
542
A
HOH
543
5
HOH
HOH
543
A
HOH
544
5
HOH
HOH
544
A
HOH
545
5
HOH
HOH
545
A
HOH
546
5
HOH
HOH
546
A
HOH
547
5
HOH
HOH
547
A
HOH
548
5
HOH
HOH
548
A
HOH
549
5
HOH
HOH
549
A
HOH
550
5
HOH
HOH
550
A
HOH
551
5
HOH
HOH
551
A
HOH
552
5
HOH
HOH
552
A
HOH
554
5
HOH
HOH
553
A
HOH
555
5
HOH
HOH
554
A
HOH
556
5
HOH
HOH
555
A
HOH
557
5
HOH
HOH
556
A
HOH
558
5
HOH
HOH
557
A
HOH
559
5
HOH
HOH
558
A
HOH
560
5
HOH
HOH
559
A
HOH
562
5
HOH
HOH
560
A
HOH
563
5
HOH
HOH
561
A
HOH
564
5
HOH
HOH
562
A
HOH
566
5
HOH
HOH
563
A
HOH
567
5
HOH
HOH
564
A
HOH
568
5
HOH
HOH
565
A
HOH
569
5
HOH
HOH
566
A
HOH
570
5
HOH
HOH
567
A
HOH
571
5
HOH
HOH
568
A
HOH
572
5
HOH
HOH
569
A
HOH
573
5
HOH
HOH
570
A
HOH
574
5
HOH
HOH
571
A
HOH
575
5
HOH
HOH
572
A
HOH
576
5
HOH
HOH
573
A
HOH
577
5
HOH
HOH
574
A
HOH
578
5
HOH
HOH
575
A
HOH
580
5
HOH
HOH
576
A
HOH
581
5
HOH
HOH
577
A
HOH
582
5
HOH
HOH
578
A
HOH
583
5
HOH
HOH
579
A
HOH
584
5
HOH
HOH
580
A
HOH
587
5
HOH
HOH
581
A
HOH
101
5
HOH
HOH
101
B
HOH
101
5
HOH
HOH
101
G
HOH
102
5
HOH
HOH
102
G
HOH
103
5
HOH
HOH
103
G
HOH
104
5
HOH
HOH
104
G
HOH
105
5
HOH
HOH
105
G
n
1
-3
A
n
2
-2
A
n
3
-1
A
n
4
0
A
THR
24
n
5
THR
24
A
TRP
25
n
6
TRP
25
A
LEU
26
n
7
LEU
26
A
SER
27
n
8
SER
27
A
ASP
28
n
9
ASP
28
A
PHE
29
n
10
PHE
29
A
PRO
30
n
11
PRO
30
A
GLN
31
n
12
GLN
31
A
ALA
32
n
13
ALA
32
A
TRP
33
n
14
TRP
33
A
ALA
34
n
15
ALA
34
A
GLU
35
n
16
GLU
35
A
THR
36
n
17
THR
36
A
GLY
37
n
18
GLY
37
A
GLY
38
n
19
GLY
38
A
MET
39
n
20
MET
39
A
GLY
40
n
21
GLY
40
A
LEU
41
n
22
LEU
41
A
ALA
42
n
23
ALA
42
A
VAL
43
n
24
VAL
43
A
ARG
44
n
25
ARG
44
A
GLN
45
n
26
GLN
45
A
ALA
46
n
27
ALA
46
A
PRO
47
n
28
PRO
47
A
LEU
48
n
29
LEU
48
A
ILE
49
n
30
ILE
49
A
ILE
50
n
31
ILE
50
A
PRO
51
n
32
PRO
51
A
LEU
52
n
33
LEU
52
A
LYS
53
n
34
LYS
53
A
ALA
54
n
35
ALA
54
A
THR
55
n
36
THR
55
A
SER
56
n
37
SER
56
A
THR
57
n
38
THR
57
A
PRO
58
n
39
PRO
58
A
VAL
59
n
40
VAL
59
A
SER
60
n
41
SER
60
A
ILE
61
n
42
ILE
61
A
LYS
62
n
43
LYS
62
A
GLN
63
n
44
GLN
63
A
TYR
64
n
45
TYR
64
A
PRO
65
n
46
PRO
65
A
MET
66
n
47
MET
66
A
SER
67
n
48
SER
67
A
GLN
68
n
49
GLN
68
A
GLU
69
n
50
GLU
69
A
ALA
70
n
51
ALA
70
A
ARG
71
n
52
ARG
71
A
LEU
72
n
53
LEU
72
A
GLY
73
n
54
GLY
73
A
ILE
74
n
55
ILE
74
A
LYS
75
n
56
LYS
75
A
PRO
76
n
57
PRO
76
A
HIS
77
n
58
HIS
77
A
ILE
78
n
59
ILE
78
A
GLN
79
n
60
GLN
79
A
ARG
80
n
61
ARG
80
A
LEU
81
n
62
LEU
81
A
LEU
82
n
63
LEU
82
A
ASP
83
n
64
ASP
83
A
GLN
84
n
65
GLN
84
A
GLY
85
n
66
GLY
85
A
ILE
86
n
67
ILE
86
A
LEU
87
n
68
LEU
87
A
VAL
88
n
69
VAL
88
A
PRO
89
n
70
PRO
89
A
CYS
90
n
71
CYS
90
A
GLN
91
n
72
GLN
91
A
SER
92
n
73
SER
92
A
PRO
93
n
74
PRO
93
A
TRP
94
n
75
TRP
94
A
ASN
95
n
76
ASN
95
A
THR
96
n
77
THR
96
A
PRO
97
n
78
PRO
97
A
LEU
98
n
79
LEU
98
A
LEU
99
n
80
LEU
99
A
PRO
100
n
81
PRO
100
A
VAL
101
n
82
VAL
101
A
LYS
102
n
83
LYS
102
A
n
84
103
A
n
85
104
A
n
86
105
A
THR
106
n
87
THR
106
A
ASN
107
n
88
ASN
107
A
ASP
108
n
89
ASP
108
A
TYR
109
n
90
TYR
109
A
ARG
110
n
91
ARG
110
A
PRO
111
n
92
PRO
111
A
VAL
112
n
93
VAL
112
A
GLN
113
n
94
GLN
113
A
ASP
114
n
95
ASP
114
A
LEU
115
n
96
LEU
115
A
ARG
116
n
97
ARG
116
A
GLU
117
n
98
GLU
117
A
VAL
118
n
99
VAL
118
A
ASN
119
n
100
ASN
119
A
LYS
120
n
101
LYS
120
A
ARG
121
n
102
ARG
121
A
VAL
122
n
103
VAL
122
A
GLU
123
n
104
GLU
123
A
ASP
124
n
105
ASP
124
A
ILE
125
n
106
ILE
125
A
HIS
126
n
107
HIS
126
A
PRO
127
n
108
PRO
127
A
THR
128
n
109
THR
128
A
VAL
129
n
110
VAL
129
A
PRO
130
n
111
PRO
130
A
ASN
131
n
112
ASN
131
A
PRO
132
n
113
PRO
132
A
TYR
133
n
114
TYR
133
A
ASN
134
n
115
ASN
134
A
LEU
135
n
116
LEU
135
A
LEU
136
n
117
LEU
136
A
SER
137
n
118
SER
137
A
GLY
138
n
119
GLY
138
A
LEU
139
n
120
LEU
139
A
PRO
140
n
121
PRO
140
A
PRO
141
n
122
PRO
141
A
SER
142
n
123
SER
142
A
HIS
143
n
124
HIS
143
A
GLN
144
n
125
GLN
144
A
TRP
145
n
126
TRP
145
A
TYR
146
n
127
TYR
146
A
THR
147
n
128
THR
147
A
VAL
148
n
129
VAL
148
A
LEU
149
n
130
LEU
149
A
ASP
150
n
131
ASP
150
A
LEU
151
n
132
LEU
151
A
LYS
152
n
133
LYS
152
A
ASP
153
n
134
ASP
153
A
ALA
154
n
135
ALA
154
A
PHE
155
n
136
PHE
155
A
PHE
156
n
137
PHE
156
A
CYS
157
n
138
CYS
157
A
LEU
158
n
139
LEU
158
A
ARG
159
n
140
ARG
159
A
LEU
160
n
141
LEU
160
A
HIS
161
n
142
HIS
161
A
PRO
162
n
143
PRO
162
A
THR
163
n
144
THR
163
A
SER
164
n
145
SER
164
A
GLN
165
n
146
GLN
165
A
PRO
166
n
147
PRO
166
A
LEU
167
n
148
LEU
167
A
PHE
168
n
149
PHE
168
A
ALA
169
n
150
ALA
169
A
PHE
170
n
151
PHE
170
A
GLU
171
n
152
GLU
171
A
TRP
172
n
153
TRP
172
A
ARG
173
n
154
ARG
173
A
ASP
174
n
155
ASP
174
A
PRO
175
n
156
PRO
175
A
GLU
176
n
157
GLU
176
A
MET
177
n
158
MET
177
A
GLY
178
n
159
GLY
178
A
ILE
179
n
160
ILE
179
A
SER
180
n
161
SER
180
A
GLY
181
n
162
GLY
181
A
GLN
182
n
163
GLN
182
A
LEU
183
n
164
LEU
183
A
THR
184
n
165
THR
184
A
TRP
185
n
166
TRP
185
A
THR
186
n
167
THR
186
A
ARG
187
n
168
ARG
187
A
LEU
188
n
169
LEU
188
A
PRO
189
n
170
PRO
189
A
GLN
190
n
171
GLN
190
A
GLY
191
n
172
GLY
191
A
PHE
192
n
173
PHE
192
A
LYS
193
n
174
LYS
193
A
ASN
194
n
175
ASN
194
A
SER
195
n
176
SER
195
A
PRO
196
n
177
PRO
196
A
THR
197
n
178
THR
197
A
LEU
198
n
179
LEU
198
A
PHE
199
n
180
PHE
199
A
ASP
200
n
181
ASP
200
A
GLU
201
n
182
GLU
201
A
ALA
202
n
183
ALA
202
A
LEU
203
n
184
LEU
203
A
HIS
204
n
185
HIS
204
A
ARG
205
n
186
ARG
205
A
ASP
206
n
187
ASP
206
A
LEU
207
n
188
LEU
207
A
ALA
208
n
189
ALA
208
A
ASP
209
n
190
ASP
209
A
PHE
210
n
191
PHE
210
A
ARG
211
n
192
ARG
211
A
ILE
212
n
193
ILE
212
A
GLN
213
n
194
GLN
213
A
HIS
214
n
195
HIS
214
A
PRO
215
n
196
PRO
215
A
ASP
216
n
197
ASP
216
A
LEU
217
n
198
LEU
217
A
ILE
218
n
199
ILE
218
A
LEU
219
n
200
LEU
219
A
LEU
220
n
201
LEU
220
A
GLN
221
n
202
GLN
221
A
TYR
222
n
203
TYR
222
A
VAL
223
n
204
VAL
223
A
ASP
224
n
205
ASP
224
A
ASP
225
n
206
ASP
225
A
LEU
226
n
207
LEU
226
A
LEU
227
n
208
LEU
227
A
LEU
228
n
209
LEU
228
A
ALA
229
n
210
ALA
229
A
ALA
230
n
211
ALA
230
A
THR
231
n
212
THR
231
A
SER
232
n
213
SER
232
A
GLU
233
n
214
GLU
233
A
LEU
234
n
215
LEU
234
A
ASP
235
n
216
ASP
235
A
CYS
236
n
217
CYS
236
A
GLN
237
n
218
GLN
237
A
GLN
238
n
219
GLN
238
A
GLY
239
n
220
GLY
239
A
THR
240
n
221
THR
240
A
ARG
241
n
222
ARG
241
A
ALA
242
n
223
ALA
242
A
LEU
243
n
224
LEU
243
A
LEU
244
n
225
LEU
244
A
GLN
245
n
226
GLN
245
A
THR
246
n
227
THR
246
A
LEU
247
n
228
LEU
247
A
GLY
248
n
229
GLY
248
A
ASN
249
n
230
ASN
249
A
LEU
250
n
231
LEU
250
A
GLY
251
n
232
GLY
251
A
TYR
252
n
233
TYR
252
A
ARG
253
n
234
ARG
253
A
ALA
254
n
235
ALA
254
A
SER
255
n
236
SER
255
A
ALA
256
n
237
ALA
256
A
LYS
257
n
238
LYS
257
A
LYS
258
n
239
LYS
258
A
ALA
259
n
240
ALA
259
A
GLN
260
n
241
GLN
260
A
ILE
261
n
242
ILE
261
A
CYS
262
n
243
CYS
262
A
GLN
263
n
244
GLN
263
A
LYS
264
n
245
LYS
264
A
GLN
265
n
246
GLN
265
A
VAL
266
n
247
VAL
266
A
LYS
267
n
248
LYS
267
A
TYR
268
n
249
TYR
268
A
LEU
269
n
250
LEU
269
A
GLY
270
n
251
GLY
270
A
TYR
271
n
252
TYR
271
A
LEU
272
n
253
LEU
272
A
LEU
273
n
254
LEU
273
A
LYS
274
n
255
LYS
274
A
GLU
275
n
256
GLU
275
A
GLY
276
n
257
GLY
276
A
GLN
277
n
258
GLN
277
A
ARG
278
n
259
ARG
278
A
DA
1
n
1
DA
1
B
DT
2
n
2
DT
2
B
DC
3
n
3
DC
3
B
DC
4
n
4
DC
4
B
DG
5
n
5
DG
5
B
DT
6
n
6
DT
6
B
DT
7
n
7
DT
7
B
DA
8
n
8
DA
8
B
DT
9
n
1
DT
9
G
DA
10
n
2
DA
10
G
DA
11
n
3
DA
11
G
DC
12
n
4
DC
12
G
DG
13
n
5
DG
13
G
DG
14
n
6
DG
14
G
DA
15
n
7
DA
15
G
DT
16
n
8
DT
16
G
author_defined_assembly
3
trimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
88
A
N
VAL
69
A
O
THR
184
A
O
THR
165
A
O
GLY
181
A
O
GLY
162
A
N
TRP
172
A
N
TRP
153
A
N
LEU
99
A
N
LEU
80
A
O
VAL
112
A
O
VAL
93
A
N
LEU
220
A
N
LEU
201
A
O
LEU
227
A
O
LEU
208
A
O
LEU
226
A
O
LEU
207
A
N
LEU
149
A
N
LEU
130
A
N
TYR
146
A
N
TYR
127
A
O
GLN
263
A
O
GLN
244
A
N
VAL
266
A
N
VAL
247
A
O
LEU
273
A
O
LEU
254
1
A
OG1
THR
106
A
OG1
THR
87
1
Y
1
A
CG2
THR
106
A
CG2
THR
87
1
Y
1
A
GLY
-3
A
GLY
1
1
Y
1
A
SER
-2
A
SER
2
1
Y
1
A
HIS
-1
A
HIS
3
1
Y
1
A
MET
0
A
MET
4
1
Y
1
A
LYS
103
A
LYS
84
1
Y
1
A
PRO
104
A
PRO
85
1
Y
1
A
GLY
105
A
GLY
86
1
Y
1
-5.45
0.80
102.40
96.95
G
G
G
C3'
C2'
C1'
DT
DT
DT
9
9
9
N
1
4.16
0.30
108.30
112.46
G
G
G
O4'
C1'
N1
DT
DT
DT
9
9
9
N
1
B
G
O3'
P
DA
DT
8
9
1.39
1_555
2_455
1
B
G
O3'
OP1
DA
DT
8
9
2.19
1_555
2_455
1
A
LEU
41
-166.46
116.50
1
A
MET
177
-145.83
18.46
1
A
VAL
223
54.76
-105.50
34.98
4.43640
0.00000
-0.00000
1.28270
-0.00000
-5.71910
0.234
0.211
0.212
1.72
26.70
1949
40829
38858
5.020
95.6
1.000
0.400
0.230
1
0.000
MOLECULAR REPLACEMENT
22.260
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
58.31
0.37
1.72
26.70
187
2543
12
325
2019
0.040
0.954
19.309
0.058
0.005
22.06
1.72
26.70
4M95
40829
40094
0
0
0.049
1
24.4
4.5
98.2
refinement
PHENIX
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
data reduction
DENZO
data scaling
SCALEPACK
phasing
MOLREP
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
d(ATCCGTTATAACGGAT)complexed with Moloney Murine Leukemia virus reverse transcriptase catalytic fragment
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
A
THR
24
A
THR
5
HELX_P
A
PHE
29
A
PHE
10
1
1
6
A
TRP
33
A
TRP
14
HELX_P
A
GLY
38
A
GLY
19
1
2
6
A
SER
67
A
SER
48
HELX_P
A
GLN
84
A
GLN
65
1
3
18
A
LEU
115
A
LEU
96
HELX_P
A
LYS
120
A
LYS
101
1
4
6
A
ASN
131
A
ASN
112
HELX_P
A
SER
137
A
SER
118
1
5
7
A
ALA
154
A
ALA
135
HELX_P
A
LEU
158
A
LEU
139
5
6
5
A
SER
164
A
SER
145
HELX_P
A
ALA
169
A
ALA
150
5
7
6
A
PRO
175
A
PRO
156
HELX_P
A
GLY
178
A
GLY
159
5
8
4
A
ASN
194
A
ASN
175
HELX_P
A
HIS
214
A
HIS
195
1
9
21
A
SER
232
A
SER
213
HELX_P
A
GLY
251
A
GLY
232
1
10
20
hydrog
WATSON-CRICK
B
DA
1
B
N1
DA
1
1_555
G
DT
16
C
N3
DT
8
1_555
hydrog
WATSON-CRICK
B
DA
1
B
N6
DA
1
1_555
G
DT
16
C
O4
DT
8
1_555
hydrog
WATSON-CRICK
B
DT
2
B
N3
DT
2
1_555
G
DA
15
C
N1
DA
7
1_555
hydrog
WATSON-CRICK
B
DT
2
B
O4
DT
2
1_555
G
DA
15
C
N6
DA
7
1_555
hydrog
WATSON-CRICK
B
DC
3
B
N3
DC
3
1_555
G
DG
14
C
N1
DG
6
1_555
hydrog
WATSON-CRICK
B
DC
3
B
N4
DC
3
1_555
G
DG
14
C
O6
DG
6
1_555
hydrog
WATSON-CRICK
B
DC
3
B
O2
DC
3
1_555
G
DG
14
C
N2
DG
6
1_555
hydrog
WATSON-CRICK
B
DC
4
B
N3
DC
4
1_555
G
DG
13
C
N1
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
4
B
N4
DC
4
1_555
G
DG
13
C
O6
DG
5
1_555
hydrog
WATSON-CRICK
B
DC
4
B
O2
DC
4
1_555
G
DG
13
C
N2
DG
5
1_555
hydrog
WATSON-CRICK
B
DG
5
B
N1
DG
5
1_555
G
DC
12
C
N3
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
5
B
N2
DG
5
1_555
G
DC
12
C
O2
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
5
B
O6
DG
5
1_555
G
DC
12
C
N4
DC
4
1_555
hydrog
WATSON-CRICK
B
DT
6
B
N3
DT
6
1_555
G
DA
11
C
N1
DA
3
1_555
hydrog
WATSON-CRICK
B
DT
6
B
O4
DT
6
1_555
G
DA
11
C
N6
DA
3
1_555
hydrog
WATSON-CRICK
B
DT
7
B
N3
DT
7
1_555
G
DA
10
C
N1
DA
2
1_555
hydrog
WATSON-CRICK
B
DT
7
B
O4
DT
7
1_555
G
DA
10
C
N6
DA
2
1_555
hydrog
WATSON-CRICK
B
DA
8
B
N1
DA
8
1_555
G
DT
9
C
N3
DT
1
1_555
hydrog
WATSON-CRICK
B
DA
8
B
N6
DA
8
1_555
G
DT
9
C
O4
DT
1
1_555
TRANSFERASE/DNA
Protein-DNA complex, Reverse transcriptase, DNA binding, DNA sequence, TRANSFERASE-DNA complex
POL_MLVMS
UNP
1
683
P03355
TWLSDFPQAWAETGGMGLAVRQAPLIIPLKATSTPVSIKQYPMSQEARLGIKPHIQRLLDQGILVPCQSPWNTPLLPVKK
PGTNDYRPVQDLREVNKRVEDIHPTVPNPYNLLSGLPPSHQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPEMGISGQL
TWTRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQ
KQVKYLGYLLKEGQR
4M95
PDB
2
4M95
ATCCGTTA
4M95
PDB
3
4M95
TAACGGAT
683
937
4M95
24
278
P03355
A
1
5
259
1
8
4M95
1
8
4M95
B
2
1
8
9
16
4M95
9
16
4M95
G
3
1
8
1
expression tag
GLY
-3
4M95
A
P03355
UNP
1
1
expression tag
SER
-2
4M95
A
P03355
UNP
2
1
expression tag
HIS
-1
4M95
A
P03355
UNP
3
1
expression tag
MET
0
4M95
A
P03355
UNP
4
3
2
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
87
A
LEU
68
A
CYS
90
A
CYS
71
A
ILE
179
A
ILE
160
A
TRP
185
A
TRP
166
A
PHE
170
A
PHE
151
A
ASP
174
A
ASP
155
A
LEU
98
A
LEU
79
A
VAL
101
A
VAL
82
A
ARG
110
A
ARG
91
A
GLN
113
A
GLN
94
A
ILE
218
A
ILE
199
A
TYR
222
A
TYR
203
A
ASP
225
A
ASP
206
A
ALA
230
A
ALA
211
A
TRP
145
A
TRP
126
A
ASP
150
A
ASP
131
A
GLN
260
A
GLN
241
A
GLN
263
A
GLN
244
A
GLN
265
A
GLN
246
A
TYR
268
A
TYR
249
A
TYR
271
A
TYR
252
A
LYS
274
A
LYS
255
BINDING SITE FOR RESIDUE EDO A 301
A
EDO
301
Software
6
BINDING SITE FOR RESIDUE EDO A 302
A
EDO
302
Software
5
BINDING SITE FOR RESIDUE EDO A 303
A
EDO
303
Software
7
A
MET
66
A
MET
47
6
1_555
A
ARG
71
A
ARG
52
6
1_555
A
GLU
171
A
GLU
152
6
1_555
A
TRP
172
A
TRP
153
6
1_555
A
ARG
173
A
ARG
154
6
1_555
A
HOH
546
G
HOH
6
1_555
A
ASN
119
A
ASN
100
5
1_555
A
LYS
120
A
LYS
101
5
1_555
A
LYS
193
A
LYS
174
5
1_555
A
HOH
451
G
HOH
5
1_555
A
HOH
509
G
HOH
5
1_555
A
ALA
54
A
ALA
35
7
4_555
A
GLY
85
A
GLY
66
7
1_555
A
ARG
159
A
ARG
140
7
1_555
A
THR
186
A
THR
167
7
1_555
A
ARG
187
A
ARG
168
7
1_555
A
HOH
454
G
HOH
7
1_555
A
HOH
548
G
HOH
7
1_555
18
P 21 21 2