0.018313 0.000000 0.005123 0.000000 0.012585 0.000000 0.000000 0.000000 0.018895 0.000000 0.000000 0.000000 Eckenroth, B.E. Doublie, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.000 105.630 90.000 54.606 79.460 54.956 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C10 H17 N2 O14 P3 482.168 THYMIDINE-5'-TRIPHOSPHATE non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N O N 90 N P N 91 N O N 92 N O N 93 N O N 94 N C N 95 R C N 96 N O N 97 S C N 98 N O N 99 N C N 100 R C Y 101 N N Y 102 N C Y 103 N N Y 104 N C Y 105 N C N 106 N N Y 107 N N Y 108 N C Y 109 N N Y 110 N C N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N O N 126 N P N 127 N O N 128 N O N 129 N O N 130 N C N 131 R C N 132 N O N 133 S C N 134 N O N 135 N C N 136 R C N 137 N N N 138 N C N 139 N O N 140 N N N 141 N C N 142 N N N 143 N C N 144 N C N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N P N 161 N O N 162 N O N 163 N O N 164 N C N 165 R C N 166 N O N 167 S C N 168 N O N 169 N C N 170 R C Y 171 N N Y 172 N C Y 173 N N Y 174 N C N 175 N C N 176 N O N 177 N N N 178 N C N 179 N N N 180 N N Y 181 N C N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N O N 197 N P N 198 N O N 199 N O N 200 N O N 201 N C N 202 R C N 203 N O N 204 S C N 205 N O N 206 N C N 207 R C N 208 N N N 209 N C N 210 N O N 211 N N N 212 N C N 213 N O N 214 N C N 215 N C N 216 N C N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N O N 240 N N N 241 N O N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N N N 253 S C N 254 N C N 255 N O N 256 N C N 257 N C N 258 N C N 259 N O N 260 N O N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 N C N 273 N C N 274 N O N 275 N O N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N N N 282 S C N 283 N C N 284 N O N 285 N C Y 286 N C Y 287 N N Y 288 N C Y 289 N C Y 290 N N N 291 N O N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N O N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 S C N 310 N C N 311 N C N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C N 332 N C N 333 N C N 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C N 354 N C N 355 N C N 356 N C N 357 N N N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N C N 380 N S N 381 N C N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N NA N 395 N N N 396 S C N 397 N C N 398 N O N 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 N C N 423 N C N 424 N C N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N N N 436 S C N 437 N C N 438 N O N 439 N C N 440 N O N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N N N 450 S C N 451 N C N 452 N O N 453 R C N 454 N O N 455 N C N 456 N O N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N N N 467 S C N 468 N C N 469 N O N 470 N C Y 471 N C Y 472 N C Y 473 N C Y 474 N N Y 475 N C Y 476 N C Y 477 N C Y 478 N C Y 479 N C N 480 N O N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 S P N 494 N O N 495 N O N 496 N O N 497 S P N 498 N O N 499 N O N 500 N O N 501 N P N 502 N O N 503 N O N 504 N O N 505 N O N 506 N C N 507 R C N 508 N O N 509 S C N 510 N O N 511 N C N 512 R C N 513 N N N 514 N C N 515 N O N 516 N N N 517 N C N 518 N O N 519 N C N 520 N C N 521 N C N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N N N 540 S C N 541 N C N 542 N O N 543 N C Y 544 N C Y 545 N C Y 546 N C Y 547 N C Y 548 N C Y 549 N C N 550 N O N 551 N O N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N H N 560 N H N 561 N H N 562 N H N 563 N N N 564 S C N 565 N C N 566 N O N 567 N C N 568 N C N 569 N C N 570 N O N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N H N 581 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub Y 471 N sing Y 472 N sing N 473 N sing Y 474 N sing Y 475 N doub N 476 N sing Y 477 N doub N 478 N sing Y 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N doub N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N doub N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N doub N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N doub N 519 N sing N 520 N sing N 521 N sing N 522 N doub N 523 N sing N 524 N sing N 525 N doub N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N doub N 537 N sing N 538 N sing N 539 N sing N 540 N sing Y 541 N doub Y 542 N sing Y 543 N sing N 544 N sing Y 545 N doub N 546 N sing Y 547 N doub N 548 N sing Y 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N doub N 561 N sing N 562 N sing N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N sing N 571 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 288 34850 34860 10.1074/jbc.M113.510891 24133209 The E295K Cancer Variant of Human Polymerase beta Favors the Mismatch Conformational Pathway during Nucleotide Selection. 2013 10.2210/pdb4m9h/pdb pdb_00004m9h 104 1 mirrors IMAGE PLATE 2012-09-27 MAR scanner 345 mm plate SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH3R 38241.738 DNA polymerase beta 2.7.7.7, 4.2.99.- E295K 1 man polymer 4853.158 DNA Template Strand 1 syn polymer 3061.004 DNA Primer Strand 1 syn polymer 1536.035 DNA Downstream Strand 1 syn polymer 22.990 SODIUM ION 2 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 482.168 THYMIDINE-5'-TRIPHOSPHATE 1 syn non-polymer 18.015 water 223 nat water no no MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINKYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINKYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE A polypeptide(L) no no (DC)(DC)(DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DA)(DT)(DC)(DA)(DG)(DC) CCGACAGCGCATCAGC T polydeoxyribonucleotide no no (DG)(DC)(DT)(DG)(DA)(DT)(DG)(DC)(DG)(DC) GCTGATGCGC P polydeoxyribonucleotide no no (DG)(DT)(DC)(DG)(DG) GTCGG D polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample POLB 9606 Homo sapiens 562 Escherichia coli Rosetta 2 DE3 plasmid pET28a 1 2.41 48.91 VAPOR DIFFUSION, HANGING DROP 7.5 14% PEG 3350, 300 mM sodium acetate pH 9, 50 mM HEPES pH 7.5, vapor diffusion, hanging drop, temperature 291K 291 -7.135 1 19 T 1 D 5 -4.248 T_DC1:DG5_D 1 -8.828 -0.206 0.287 -0.336 0.382 1 19 T 2 D 4 1.710 T_DC2:DG4_D 2 -4.811 0.387 -0.274 -0.373 3.994 1 19 T 3 D 3 -3.168 T_DG3:DC3_D 3 -5.700 -0.122 0.246 -0.138 3.720 1 20 T 4 D 2 -1.719 T_DA4:DT2_D 4 -7.805 -0.022 0.413 -0.079 15.847 1 19 T 5 D 1 0.394 T_DC5:DG1_D 5 1.349 0.388 -0.059 -0.126 -13.845 1 19 T 7 P 10 4.829 T_DG7:DC10_P 6 -3.645 -0.695 -0.536 -0.342 3.945 1 19 T 8 P 9 0.517 T_DC8:DG9_P 7 -12.346 0.147 -0.099 -0.203 4.893 1 19 T 9 P 8 1.288 T_DG9:DC8_P 8 -8.166 -0.400 0.177 -0.156 5.908 1 19 T 10 P 7 -0.475 T_DC10:DG7_P 9 -10.997 0.078 0.405 -0.040 6.512 1 20 T 11 P 6 1.829 T_DA11:DT6_P 10 -15.383 0.343 0.398 -0.077 8.470 1 20 T 12 P 5 6.339 T_DT12:DA5_P 11 -12.405 0.214 -0.018 0.085 -1.535 1 19 T 13 P 4 1.989 T_DC13:DG4_P 12 -16.312 0.093 0.142 -0.076 -4.717 1 20 T 14 P 3 -0.238 T_DA14:DT3_P 13 -10.008 -0.117 0.118 -0.115 3.596 1 19 T 15 P 2 1.607 T_DG15:DC2_P 14 -8.010 -0.314 0.119 -0.123 8.872 1 19 T 16 P 1 1.850 T_DC16:DG1_P 15 -15.964 0.166 0.333 -0.233 3.313 39.676 T T 1 2 1.659 D D 5 4 3.131 1.120 1.224 0.546 TT_DC1DC2:DG4DG5_DD 1 7.371 -10.920 38.997 0.675 -0.949 3.393 33.501 T T 2 3 11.138 D D 4 3 3.216 6.353 -1.051 0.555 TT_DC2DG3:DC3DG4_DD 2 -5.726 10.039 32.421 -0.112 0.854 3.280 37.348 T T 3 4 0.025 D D 3 2 3.271 0.016 -0.281 -0.269 TT_DG3DA4:DT2DC3_DD 3 -1.596 2.494 37.315 -0.423 0.229 3.041 29.076 T T 4 5 3.141 D D 2 1 3.005 1.574 0.825 -0.506 TT_DA4DC5:DG1DT2_DD 4 2.935 -5.858 28.889 -1.328 -1.047 2.987 32.052 T T 7 8 1.592 P P 10 9 2.934 0.878 -0.729 0.165 TT_DG7DC8:DG9DC10_PP 5 -2.699 4.895 31.930 0.155 0.880 3.463 36.894 T T 8 9 16.389 P P 9 8 3.361 10.208 -0.767 0.559 TT_DC8DG9:DC8DG9_PP 6 -5.526 8.873 35.081 -0.596 0.411 3.105 30.956 T T 9 10 10.632 P P 8 7 3.232 5.639 -0.292 -0.496 TT_DG9DC10:DG7DC8_PP 7 -2.433 4.588 30.355 -1.995 0.088 3.177 39.535 T T 10 11 5.494 P P 7 6 3.191 3.711 -0.091 -0.008 TT_DC10DA11:DT6DG7_PP 8 0.146 -0.216 39.367 -0.437 0.151 3.298 29.976 T T 11 12 -2.850 P P 6 5 3.227 -1.470 0.549 -0.647 TT_DA11DT12:DA5DT6_PP 9 3.896 -7.556 29.692 -0.946 -0.256 3.366 39.719 T T 12 13 -3.334 P P 5 4 3.365 -2.264 0.034 -0.103 TT_DT12DC13:DG4DA5_PP 10 0.258 -0.380 39.656 0.120 -0.019 3.298 37.468 T T 13 14 9.557 P P 4 3 3.345 6.114 -0.430 -0.024 TT_DC13DA14:DT3DG4_PP 11 0.143 -0.224 36.984 -0.857 0.688 3.081 31.684 T T 14 15 0.759 P P 3 2 3.112 0.414 0.294 -0.390 TT_DA14DG15:DC2DT3_PP 12 -2.132 3.909 31.611 -0.787 -0.911 2.868 36.235 T T 15 16 12.262 P P 2 1 3.108 7.565 0.244 -0.714 TT_DG15DC16:DG1DC2_PP 13 -3.106 5.035 35.331 -2.131 -0.796 software chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Database references Refinement description Data collection Database references Derived calculations 1 0 2013-10-16 1 1 2013-10-30 1 2 2013-12-18 1 3 2017-11-15 1 4 2024-02-28 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2013-08-14 REL REL NA SODIUM ION CL CHLORIDE ION TTP THYMIDINE-5'-TRIPHOSPHATE HOH water DNA Template Strand, 16mer sample DNA Primer Strand, 10mer sample DNA Downstream Strand, 5mer sample NA 401 5 NA NA 401 A NA 402 5 NA NA 402 A CL 403 6 CL CL 403 A TTP 501 7 TTP TTP 404 A HOH 1 8 HOH HOH 501 A HOH 2 8 HOH HOH 502 A HOH 3 8 HOH HOH 503 A HOH 4 8 HOH HOH 504 A HOH 5 8 HOH HOH 505 A HOH 6 8 HOH HOH 506 A HOH 7 8 HOH HOH 507 A HOH 8 8 HOH HOH 508 A HOH 9 8 HOH HOH 509 A HOH 10 8 HOH HOH 510 A HOH 14 8 HOH HOH 511 A HOH 15 8 HOH HOH 512 A HOH 16 8 HOH HOH 513 A HOH 17 8 HOH HOH 514 A HOH 18 8 HOH HOH 515 A HOH 19 8 HOH HOH 516 A HOH 20 8 HOH HOH 517 A HOH 21 8 HOH HOH 518 A HOH 24 8 HOH HOH 519 A HOH 25 8 HOH HOH 520 A HOH 29 8 HOH HOH 521 A HOH 30 8 HOH HOH 522 A HOH 31 8 HOH HOH 523 A HOH 32 8 HOH HOH 524 A HOH 33 8 HOH HOH 525 A HOH 34 8 HOH HOH 526 A HOH 35 8 HOH HOH 527 A HOH 36 8 HOH HOH 528 A HOH 37 8 HOH HOH 529 A HOH 38 8 HOH HOH 530 A HOH 39 8 HOH HOH 531 A HOH 40 8 HOH HOH 532 A HOH 41 8 HOH HOH 533 A HOH 42 8 HOH HOH 534 A HOH 43 8 HOH HOH 535 A HOH 46 8 HOH HOH 536 A HOH 47 8 HOH HOH 537 A HOH 48 8 HOH HOH 538 A HOH 49 8 HOH HOH 539 A HOH 50 8 HOH HOH 540 A HOH 52 8 HOH HOH 541 A HOH 53 8 HOH HOH 542 A HOH 54 8 HOH HOH 543 A HOH 55 8 HOH HOH 544 A HOH 56 8 HOH HOH 545 A HOH 57 8 HOH HOH 546 A HOH 60 8 HOH HOH 547 A HOH 63 8 HOH HOH 548 A HOH 64 8 HOH HOH 549 A HOH 65 8 HOH HOH 550 A HOH 66 8 HOH HOH 551 A HOH 67 8 HOH HOH 552 A HOH 68 8 HOH HOH 553 A HOH 69 8 HOH HOH 554 A HOH 70 8 HOH HOH 555 A HOH 71 8 HOH HOH 556 A HOH 72 8 HOH HOH 557 A HOH 73 8 HOH HOH 558 A HOH 74 8 HOH HOH 559 A HOH 75 8 HOH HOH 560 A HOH 76 8 HOH HOH 561 A HOH 77 8 HOH HOH 562 A HOH 85 8 HOH HOH 563 A HOH 86 8 HOH HOH 564 A HOH 100 8 HOH HOH 565 A HOH 101 8 HOH HOH 566 A HOH 104 8 HOH HOH 567 A HOH 107 8 HOH HOH 568 A HOH 108 8 HOH HOH 569 A HOH 109 8 HOH HOH 570 A HOH 110 8 HOH HOH 571 A HOH 111 8 HOH HOH 572 A HOH 112 8 HOH HOH 573 A HOH 113 8 HOH HOH 574 A HOH 114 8 HOH HOH 575 A HOH 115 8 HOH HOH 576 A HOH 116 8 HOH HOH 577 A HOH 117 8 HOH HOH 578 A HOH 118 8 HOH HOH 579 A HOH 119 8 HOH HOH 580 A HOH 120 8 HOH HOH 581 A HOH 130 8 HOH HOH 582 A HOH 137 8 HOH HOH 583 A HOH 139 8 HOH HOH 584 A HOH 140 8 HOH HOH 585 A HOH 141 8 HOH HOH 586 A HOH 142 8 HOH HOH 587 A HOH 143 8 HOH HOH 588 A HOH 144 8 HOH HOH 589 A HOH 145 8 HOH HOH 590 A HOH 146 8 HOH HOH 591 A HOH 147 8 HOH HOH 592 A HOH 148 8 HOH HOH 593 A HOH 150 8 HOH HOH 594 A HOH 151 8 HOH HOH 595 A HOH 154 8 HOH HOH 596 A HOH 157 8 HOH HOH 597 A HOH 158 8 HOH HOH 598 A HOH 159 8 HOH HOH 599 A HOH 160 8 HOH HOH 600 A HOH 161 8 HOH HOH 601 A HOH 162 8 HOH HOH 602 A HOH 167 8 HOH HOH 603 A HOH 170 8 HOH HOH 604 A HOH 171 8 HOH HOH 605 A HOH 172 8 HOH HOH 606 A HOH 173 8 HOH HOH 607 A HOH 174 8 HOH HOH 608 A HOH 175 8 HOH HOH 609 A HOH 176 8 HOH HOH 610 A HOH 177 8 HOH HOH 611 A HOH 178 8 HOH HOH 612 A HOH 179 8 HOH HOH 613 A HOH 180 8 HOH HOH 614 A HOH 181 8 HOH HOH 615 A HOH 182 8 HOH HOH 616 A HOH 183 8 HOH HOH 617 A HOH 184 8 HOH HOH 618 A HOH 185 8 HOH HOH 619 A HOH 186 8 HOH HOH 620 A HOH 189 8 HOH HOH 621 A HOH 194 8 HOH HOH 622 A HOH 195 8 HOH HOH 623 A HOH 196 8 HOH HOH 624 A HOH 204 8 HOH HOH 625 A HOH 206 8 HOH HOH 626 A HOH 207 8 HOH HOH 627 A HOH 208 8 HOH HOH 628 A HOH 209 8 HOH HOH 629 A HOH 212 8 HOH HOH 630 A HOH 213 8 HOH HOH 631 A HOH 214 8 HOH HOH 632 A HOH 217 8 HOH HOH 633 A HOH 218 8 HOH HOH 634 A HOH 219 8 HOH HOH 635 A HOH 220 8 HOH HOH 636 A HOH 22 8 HOH HOH 101 T HOH 45 8 HOH HOH 102 T HOH 51 8 HOH HOH 103 T HOH 58 8 HOH HOH 104 T HOH 59 8 HOH HOH 105 T HOH 78 8 HOH HOH 106 T HOH 79 8 HOH HOH 107 T HOH 80 8 HOH HOH 108 T HOH 87 8 HOH HOH 109 T HOH 89 8 HOH HOH 110 T HOH 90 8 HOH HOH 111 T HOH 91 8 HOH HOH 112 T HOH 92 8 HOH HOH 113 T HOH 93 8 HOH HOH 114 T HOH 96 8 HOH HOH 115 T HOH 99 8 HOH HOH 116 T HOH 121 8 HOH HOH 117 T HOH 126 8 HOH HOH 118 T HOH 127 8 HOH HOH 119 T HOH 132 8 HOH HOH 120 T HOH 133 8 HOH HOH 121 T HOH 134 8 HOH HOH 122 T HOH 152 8 HOH HOH 123 T HOH 165 8 HOH HOH 124 T HOH 168 8 HOH HOH 125 T HOH 169 8 HOH HOH 126 T HOH 187 8 HOH HOH 127 T HOH 190 8 HOH HOH 128 T HOH 191 8 HOH HOH 129 T HOH 198 8 HOH HOH 130 T HOH 199 8 HOH HOH 131 T HOH 200 8 HOH HOH 132 T HOH 201 8 HOH HOH 133 T HOH 205 8 HOH HOH 134 T HOH 215 8 HOH HOH 135 T HOH 216 8 HOH HOH 136 T HOH 221 8 HOH HOH 137 T HOH 222 8 HOH HOH 138 T HOH 223 8 HOH HOH 139 T HOH 11 8 HOH HOH 101 P HOH 12 8 HOH HOH 102 P HOH 13 8 HOH HOH 103 P HOH 44 8 HOH HOH 104 P HOH 61 8 HOH HOH 105 P HOH 62 8 HOH HOH 106 P HOH 81 8 HOH HOH 107 P HOH 82 8 HOH HOH 108 P HOH 83 8 HOH HOH 109 P HOH 84 8 HOH HOH 110 P HOH 94 8 HOH HOH 111 P HOH 95 8 HOH HOH 112 P HOH 97 8 HOH HOH 113 P HOH 98 8 HOH HOH 114 P HOH 102 8 HOH HOH 115 P HOH 103 8 HOH HOH 116 P HOH 105 8 HOH HOH 117 P HOH 106 8 HOH HOH 118 P HOH 122 8 HOH HOH 119 P HOH 123 8 HOH HOH 120 P HOH 124 8 HOH HOH 121 P HOH 125 8 HOH HOH 122 P HOH 128 8 HOH HOH 123 P HOH 129 8 HOH HOH 124 P HOH 163 8 HOH HOH 125 P HOH 164 8 HOH HOH 126 P HOH 166 8 HOH HOH 127 P HOH 192 8 HOH HOH 128 P HOH 193 8 HOH HOH 129 P HOH 197 8 HOH HOH 130 P HOH 202 8 HOH HOH 131 P HOH 203 8 HOH HOH 132 P HOH 23 8 HOH HOH 101 D HOH 26 8 HOH HOH 102 D HOH 27 8 HOH HOH 103 D HOH 28 8 HOH HOH 104 D HOH 88 8 HOH HOH 105 D HOH 131 8 HOH HOH 106 D HOH 135 8 HOH HOH 107 D HOH 136 8 HOH HOH 108 D HOH 138 8 HOH HOH 109 D HOH 149 8 HOH HOH 110 D HOH 153 8 HOH HOH 111 D HOH 155 8 HOH HOH 112 D HOH 156 8 HOH HOH 113 D HOH 188 8 HOH HOH 114 D HOH 210 8 HOH HOH 115 D HOH 211 8 HOH HOH 116 D n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A n 9 9 A n 10 10 A LEU 11 n 11 LEU 11 A ASN 12 n 12 ASN 12 A GLY 13 n 13 GLY 13 A GLY 14 n 14 GLY 14 A ILE 15 n 15 ILE 15 A THR 16 n 16 THR 16 A ASP 17 n 17 ASP 17 A MET 18 n 18 MET 18 A LEU 19 n 19 LEU 19 A THR 20 n 20 THR 20 A GLU 21 n 21 GLU 21 A LEU 22 n 22 LEU 22 A ALA 23 n 23 ALA 23 A ASN 24 n 24 ASN 24 A PHE 25 n 25 PHE 25 A GLU 26 n 26 GLU 26 A LYS 27 n 27 LYS 27 A ASN 28 n 28 ASN 28 A VAL 29 n 29 VAL 29 A SER 30 n 30 SER 30 A GLN 31 n 31 GLN 31 A ALA 32 n 32 ALA 32 A ILE 33 n 33 ILE 33 A HIS 34 n 34 HIS 34 A LYS 35 n 35 LYS 35 A TYR 36 n 36 TYR 36 A ASN 37 n 37 ASN 37 A ALA 38 n 38 ALA 38 A TYR 39 n 39 TYR 39 A ARG 40 n 40 ARG 40 A LYS 41 n 41 LYS 41 A ALA 42 n 42 ALA 42 A ALA 43 n 43 ALA 43 A SER 44 n 44 SER 44 A VAL 45 n 45 VAL 45 A ILE 46 n 46 ILE 46 A ALA 47 n 47 ALA 47 A LYS 48 n 48 LYS 48 A TYR 49 n 49 TYR 49 A PRO 50 n 50 PRO 50 A HIS 51 n 51 HIS 51 A LYS 52 n 52 LYS 52 A ILE 53 n 53 ILE 53 A LYS 54 n 54 LYS 54 A SER 55 n 55 SER 55 A GLY 56 n 56 GLY 56 A ALA 57 n 57 ALA 57 A GLU 58 n 58 GLU 58 A ALA 59 n 59 ALA 59 A LYS 60 n 60 LYS 60 A LYS 61 n 61 LYS 61 A LEU 62 n 62 LEU 62 A PRO 63 n 63 PRO 63 A GLY 64 n 64 GLY 64 A VAL 65 n 65 VAL 65 A GLY 66 n 66 GLY 66 A THR 67 n 67 THR 67 A LYS 68 n 68 LYS 68 A ILE 69 n 69 ILE 69 A ALA 70 n 70 ALA 70 A GLU 71 n 71 GLU 71 A LYS 72 n 72 LYS 72 A ILE 73 n 73 ILE 73 A ASP 74 n 74 ASP 74 A GLU 75 n 75 GLU 75 A PHE 76 n 76 PHE 76 A LEU 77 n 77 LEU 77 A ALA 78 n 78 ALA 78 A THR 79 n 79 THR 79 A GLY 80 n 80 GLY 80 A LYS 81 n 81 LYS 81 A LEU 82 n 82 LEU 82 A ARG 83 n 83 ARG 83 A LYS 84 n 84 LYS 84 A LEU 85 n 85 LEU 85 A GLU 86 n 86 GLU 86 A LYS 87 n 87 LYS 87 A ILE 88 n 88 ILE 88 A ARG 89 n 89 ARG 89 A GLN 90 n 90 GLN 90 A ASP 91 n 91 ASP 91 A ASP 92 n 92 ASP 92 A THR 93 n 93 THR 93 A SER 94 n 94 SER 94 A SER 95 n 95 SER 95 A SER 96 n 96 SER 96 A ILE 97 n 97 ILE 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A LEU 100 n 100 LEU 100 A THR 101 n 101 THR 101 A ARG 102 n 102 ARG 102 A VAL 103 n 103 VAL 103 A SER 104 n 104 SER 104 A GLY 105 n 105 GLY 105 A ILE 106 n 106 ILE 106 A GLY 107 n 107 GLY 107 A PRO 108 n 108 PRO 108 A SER 109 n 109 SER 109 A ALA 110 n 110 ALA 110 A ALA 111 n 111 ALA 111 A ARG 112 n 112 ARG 112 A LYS 113 n 113 LYS 113 A PHE 114 n 114 PHE 114 A VAL 115 n 115 VAL 115 A ASP 116 n 116 ASP 116 A GLU 117 n 117 GLU 117 A GLY 118 n 118 GLY 118 A ILE 119 n 119 ILE 119 A LYS 120 n 120 LYS 120 A THR 121 n 121 THR 121 A LEU 122 n 122 LEU 122 A GLU 123 n 123 GLU 123 A ASP 124 n 124 ASP 124 A LEU 125 n 125 LEU 125 A ARG 126 n 126 ARG 126 A LYS 127 n 127 LYS 127 A ASN 128 n 128 ASN 128 A GLU 129 n 129 GLU 129 A ASP 130 n 130 ASP 130 A LYS 131 n 131 LYS 131 A LEU 132 n 132 LEU 132 A ASN 133 n 133 ASN 133 A HIS 134 n 134 HIS 134 A HIS 135 n 135 HIS 135 A GLN 136 n 136 GLN 136 A ARG 137 n 137 ARG 137 A ILE 138 n 138 ILE 138 A GLY 139 n 139 GLY 139 A LEU 140 n 140 LEU 140 A LYS 141 n 141 LYS 141 A TYR 142 n 142 TYR 142 A PHE 143 n 143 PHE 143 A GLY 144 n 144 GLY 144 A ASP 145 n 145 ASP 145 A PHE 146 n 146 PHE 146 A GLU 147 n 147 GLU 147 A LYS 148 n 148 LYS 148 A ARG 149 n 149 ARG 149 A ILE 150 n 150 ILE 150 A PRO 151 n 151 PRO 151 A ARG 152 n 152 ARG 152 A GLU 153 n 153 GLU 153 A GLU 154 n 154 GLU 154 A MET 155 n 155 MET 155 A LEU 156 n 156 LEU 156 A GLN 157 n 157 GLN 157 A MET 158 n 158 MET 158 A GLN 159 n 159 GLN 159 A ASP 160 n 160 ASP 160 A ILE 161 n 161 ILE 161 A VAL 162 n 162 VAL 162 A LEU 163 n 163 LEU 163 A ASN 164 n 164 ASN 164 A GLU 165 n 165 GLU 165 A VAL 166 n 166 VAL 166 A LYS 167 n 167 LYS 167 A LYS 168 n 168 LYS 168 A VAL 169 n 169 VAL 169 A ASP 170 n 170 ASP 170 A SER 171 n 171 SER 171 A GLU 172 n 172 GLU 172 A TYR 173 n 173 TYR 173 A ILE 174 n 174 ILE 174 A ALA 175 n 175 ALA 175 A THR 176 n 176 THR 176 A VAL 177 n 177 VAL 177 A CYS 178 n 178 CYS 178 A GLY 179 n 179 GLY 179 A SER 180 n 180 SER 180 A PHE 181 n 181 PHE 181 A ARG 182 n 182 ARG 182 A ARG 183 n 183 ARG 183 A GLY 184 n 184 GLY 184 A ALA 185 n 185 ALA 185 A GLU 186 n 186 GLU 186 A SER 187 n 187 SER 187 A SER 188 n 188 SER 188 A GLY 189 n 189 GLY 189 A ASP 190 n 190 ASP 190 A MET 191 n 191 MET 191 A ASP 192 n 192 ASP 192 A VAL 193 n 193 VAL 193 A LEU 194 n 194 LEU 194 A LEU 195 n 195 LEU 195 A THR 196 n 196 THR 196 A HIS 197 n 197 HIS 197 A PRO 198 n 198 PRO 198 A SER 199 n 199 SER 199 A PHE 200 n 200 PHE 200 A THR 201 n 201 THR 201 A SER 202 n 202 SER 202 A n 203 203 A n 204 204 A n 205 205 A n 206 206 A n 207 207 A n 208 208 A LYS 209 n 209 LYS 209 A LEU 210 n 210 LEU 210 A LEU 211 n 211 LEU 211 A HIS 212 n 212 HIS 212 A GLN 213 n 213 GLN 213 A VAL 214 n 214 VAL 214 A VAL 215 n 215 VAL 215 A GLU 216 n 216 GLU 216 A GLN 217 n 217 GLN 217 A LEU 218 n 218 LEU 218 A GLN 219 n 219 GLN 219 A LYS 220 n 220 LYS 220 A VAL 221 n 221 VAL 221 A HIS 222 n 222 HIS 222 A PHE 223 n 223 PHE 223 A ILE 224 n 224 ILE 224 A THR 225 n 225 THR 225 A ASP 226 n 226 ASP 226 A THR 227 n 227 THR 227 A LEU 228 n 228 LEU 228 A SER 229 n 229 SER 229 A LYS 230 n 230 LYS 230 A GLY 231 n 231 GLY 231 A GLU 232 n 232 GLU 232 A THR 233 n 233 THR 233 A LYS 234 n 234 LYS 234 A PHE 235 n 235 PHE 235 A MET 236 n 236 MET 236 A GLY 237 n 237 GLY 237 A VAL 238 n 238 VAL 238 A CYS 239 n 239 CYS 239 A GLN 240 n 240 GLN 240 A LEU 241 n 241 LEU 241 A PRO 242 n 242 PRO 242 A SER 243 n 243 SER 243 A n 244 244 A n 245 245 A n 246 246 A n 247 247 A LYS 248 n 248 LYS 248 A GLU 249 n 249 GLU 249 A TYR 250 n 250 TYR 250 A PRO 251 n 251 PRO 251 A HIS 252 n 252 HIS 252 A ARG 253 n 253 ARG 253 A ARG 254 n 254 ARG 254 A ILE 255 n 255 ILE 255 A ASP 256 n 256 ASP 256 A ILE 257 n 257 ILE 257 A ARG 258 n 258 ARG 258 A LEU 259 n 259 LEU 259 A ILE 260 n 260 ILE 260 A PRO 261 n 261 PRO 261 A LYS 262 n 262 LYS 262 A ASP 263 n 263 ASP 263 A GLN 264 n 264 GLN 264 A TYR 265 n 265 TYR 265 A TYR 266 n 266 TYR 266 A CYS 267 n 267 CYS 267 A GLY 268 n 268 GLY 268 A VAL 269 n 269 VAL 269 A LEU 270 n 270 LEU 270 A TYR 271 n 271 TYR 271 A PHE 272 n 272 PHE 272 A THR 273 n 273 THR 273 A GLY 274 n 274 GLY 274 A SER 275 n 275 SER 275 A ASP 276 n 276 ASP 276 A ILE 277 n 277 ILE 277 A PHE 278 n 278 PHE 278 A ASN 279 n 279 ASN 279 A LYS 280 n 280 LYS 280 A ASN 281 n 281 ASN 281 A MET 282 n 282 MET 282 A ARG 283 n 283 ARG 283 A ALA 284 n 284 ALA 284 A HIS 285 n 285 HIS 285 A ALA 286 n 286 ALA 286 A LEU 287 n 287 LEU 287 A GLU 288 n 288 GLU 288 A LYS 289 n 289 LYS 289 A GLY 290 n 290 GLY 290 A PHE 291 n 291 PHE 291 A THR 292 n 292 THR 292 A ILE 293 n 293 ILE 293 A ASN 294 n 294 ASN 294 A LYS 295 n 295 LYS 295 A TYR 296 n 296 TYR 296 A THR 297 n 297 THR 297 A ILE 298 n 298 ILE 298 A ARG 299 n 299 ARG 299 A PRO 300 n 300 PRO 300 A LEU 301 n 301 LEU 301 A GLY 302 n 302 GLY 302 A VAL 303 n 303 VAL 303 A THR 304 n 304 THR 304 A GLY 305 n 305 GLY 305 A VAL 306 n 306 VAL 306 A ALA 307 n 307 ALA 307 A GLY 308 n 308 GLY 308 A GLU 309 n 309 GLU 309 A PRO 310 n 310 PRO 310 A LEU 311 n 311 LEU 311 A PRO 312 n 312 PRO 312 A VAL 313 n 313 VAL 313 A ASP 314 n 314 ASP 314 A SER 315 n 315 SER 315 A GLU 316 n 316 GLU 316 A LYS 317 n 317 LYS 317 A ASP 318 n 318 ASP 318 A ILE 319 n 319 ILE 319 A PHE 320 n 320 PHE 320 A ASP 321 n 321 ASP 321 A TYR 322 n 322 TYR 322 A ILE 323 n 323 ILE 323 A GLN 324 n 324 GLN 324 A TRP 325 n 325 TRP 325 A LYS 326 n 326 LYS 326 A TYR 327 n 327 TYR 327 A ARG 328 n 328 ARG 328 A GLU 329 n 329 GLU 329 A PRO 330 n 330 PRO 330 A LYS 331 n 331 LYS 331 A ASP 332 n 332 ASP 332 A ARG 333 n 333 ARG 333 A SER 334 n 334 SER 334 A n 335 335 A DC 1 n 1 DC 1 T DC 2 n 2 DC 2 T DG 3 n 3 DG 3 T DA 4 n 4 DA 4 T DC 5 n 5 DC 5 T DA 6 n 6 DA 6 T DG 7 n 7 DG 7 T DC 8 n 8 DC 8 T DG 9 n 9 DG 9 T DC 10 n 10 DC 10 T DA 11 n 11 DA 11 T DT 12 n 12 DT 12 T DC 13 n 13 DC 13 T DA 14 n 14 DA 14 T DG 15 n 15 DG 15 T DC 16 n 16 DC 16 T DG 1 n 1 DG 1 P DC 2 n 2 DC 2 P DT 3 n 3 DT 3 P DG 4 n 4 DG 4 P DA 5 n 5 DA 5 P DT 6 n 6 DT 6 P DG 7 n 7 DG 7 P DC 8 n 8 DC 8 P DG 9 n 9 DG 9 P DC 10 n 10 DC 10 P DG 1 n 1 DG 1 D DT 2 n 2 DT 2 D DC 3 n 3 DC 3 D DG 4 n 4 DG 4 D DG 5 n 5 DG 5 D 1.1998 -0.1742 0.1191 1.9528 0.5675 1.6858 0.0023 0.0560 -0.2407 -0.2951 0.0388 0.0068 0.1119 -0.2242 -0.0494 0.1654 -0.0131 0.0098 0.1049 0.0084 0.1262 refined 30.7980 -4.1575 7.9368 X-RAY DIFFRACTION 3.1729 0.1961 0.1744 1.1878 0.1342 1.1791 0.1277 -0.0812 -0.1284 -0.0229 -0.0617 0.0889 0.0271 -0.1161 -0.0581 0.0834 0.0127 -0.0025 0.0788 0.0027 0.0910 refined 5.0368 9.0464 22.1385 X-RAY DIFFRACTION 0.4037 0.6042 -0.8797 0.8624 -1.1380 1.6926 -0.8614 0.6615 -0.6161 -1.2149 1.2636 -0.5914 0.4958 -0.5317 -0.1540 0.5133 -0.1981 0.1539 0.6813 -0.2070 0.2189 refined 3.5915 7.3878 -4.5317 X-RAY DIFFRACTION 1.7785 -1.1895 -1.0339 3.7591 0.5288 4.5825 0.2083 0.2610 0.4774 -0.0796 0.2291 -0.0853 -0.0581 0.5618 -0.2407 0.3004 0.0740 0.0385 0.1827 -0.0088 0.1368 refined 32.0705 13.9239 -3.1238 X-RAY DIFFRACTION 1.0499 -0.0677 -0.0483 3.2367 -0.0796 0.7430 0.2963 0.4229 0.2137 0.0868 -0.1775 -0.7236 0.0817 0.1826 -0.0462 0.1943 -0.0074 -0.0070 0.0971 0.0344 0.3028 refined 16.5718 24.4746 15.1262 X-RAY DIFFRACTION 1.2149 -0.2921 -0.0864 4.0685 0.2571 1.6822 0.1548 -0.0440 0.3228 -0.6225 -0.3664 -0.0238 -0.1469 -0.1290 0.1536 0.1450 -0.0323 -0.0475 0.1439 -0.0154 0.1457 refined 17.1172 25.7077 16.0354 X-RAY DIFFRACTION 1.1575 -0.1159 -0.4889 3.1696 -1.8549 2.8203 -0.0266 0.6844 0.0174 -0.3627 0.1399 0.4757 0.4588 -0.2856 -0.0940 0.4441 -0.0969 -0.0303 0.2577 0.2577 -0.4727 refined 31.5326 6.2097 -4.1857 X-RAY DIFFRACTION 1.6075 -1.3700 -0.9483 1.1047 0.7585 0.4406 0.0736 -0.1945 -0.2153 -0.0070 -0.0028 -0.0860 0.0226 0.1345 -0.0656 0.1531 -0.0301 -0.0080 0.1897 0.0327 0.1673 refined 33.9151 1.3026 22.9661 X-RAY DIFFRACTION A 11 A 79 X-RAY DIFFRACTION 1 chain 'A' and (resid 11:79) A 103 A 261 X-RAY DIFFRACTION 2 chain 'A' and (resid 103:261) A 262 A 334 X-RAY DIFFRACTION 3 chain 'A' and (resid 262:334) T 1 T 5 X-RAY DIFFRACTION 4 chain 'T' and (resid 1:5) T 6 T 16 X-RAY DIFFRACTION 5 chain 'T' and (resid 6:16) P 1 P 10 X-RAY DIFFRACTION 6 chain 'P' and (resid 1:10) D 1 D 5 X-RAY DIFFRACTION 7 chain 'D' and (resid 1:5) A 80 A 102 X-RAY DIFFRACTION 8 chain 'A' and (resid 80:102) author_and_software_defined_assembly PISA 4 tetrameric 4310 -55 20050 A LYS 60 A O LYS 60 1_555 A NA 401 E NA NA 1_555 A LEU 62 A O LEU 62 1_555 91.8 A LYS 60 A O LYS 60 1_555 A NA 401 E NA NA 1_555 A VAL 65 A O VAL 65 1_555 87.4 A LEU 62 A O LEU 62 1_555 A NA 401 E NA NA 1_555 A VAL 65 A O VAL 65 1_555 98.1 A LYS 60 A O LYS 60 1_555 A NA 401 E NA NA 1_555 A HOH 596 I O HOH 1_555 90.9 A LEU 62 A O LEU 62 1_555 A NA 401 E NA NA 1_555 A HOH 596 I O HOH 1_555 94.0 A VAL 65 A O VAL 65 1_555 A NA 401 E NA NA 1_555 A HOH 596 I O HOH 1_555 167.8 A LYS 60 A O LYS 60 1_555 A NA 401 E NA NA 1_555 D DC 3 D OP1 DC 3 1_555 175.7 A LEU 62 A O LEU 62 1_555 A NA 401 E NA NA 1_555 D DC 3 D OP1 DC 3 1_555 91.9 A VAL 65 A O VAL 65 1_555 A NA 401 E NA NA 1_555 D DC 3 D OP1 DC 3 1_555 94.2 A HOH 596 I O HOH 1_555 A NA 401 E NA NA 1_555 D DC 3 D OP1 DC 3 1_555 86.6 A LYS 60 A O LYS 60 1_555 A NA 401 E NA NA 1_555 D HOH 102 L O HOH 1_555 93.0 A LEU 62 A O LEU 62 1_555 A NA 401 E NA NA 1_555 D HOH 102 L O HOH 1_555 169.5 A VAL 65 A O VAL 65 1_555 A NA 401 E NA NA 1_555 D HOH 102 L O HOH 1_555 91.4 A HOH 596 I O HOH 1_555 A NA 401 E NA NA 1_555 D HOH 102 L O HOH 1_555 76.5 D DC 3 D OP1 DC 3 1_555 A NA 401 E NA NA 1_555 D HOH 102 L O HOH 1_555 83.1 A THR 101 A O THR 101 1_555 A NA 402 F NA NA 1_555 A VAL 103 A O VAL 103 1_555 92.9 A THR 101 A O THR 101 1_555 A NA 402 F NA NA 1_555 A ILE 106 A O ILE 106 1_555 92.0 A VAL 103 A O VAL 103 1_555 A NA 402 F NA NA 1_555 A ILE 106 A O ILE 106 1_555 88.8 A THR 101 A O THR 101 1_555 A NA 402 F NA NA 1_555 A HOH 510 I O HOH 1_555 79.6 A VAL 103 A O VAL 103 1_555 A NA 402 F NA NA 1_555 A HOH 510 I O HOH 1_555 95.3 A ILE 106 A O ILE 106 1_555 A NA 402 F NA NA 1_555 A HOH 510 I O HOH 1_555 170.8 A THR 101 A O THR 101 1_555 A NA 402 F NA NA 1_555 P DG 9 C OP1 DG 9 1_555 162.0 A VAL 103 A O VAL 103 1_555 A NA 402 F NA NA 1_555 P DG 9 C OP1 DG 9 1_555 101.5 A ILE 106 A O ILE 106 1_555 A NA 402 F NA NA 1_555 P DG 9 C OP1 DG 9 1_555 99.1 A HOH 510 I O HOH 1_555 A NA 402 F NA NA 1_555 P DG 9 C OP1 DG 9 1_555 88.2 A THR 101 A O THR 101 1_555 A NA 402 F NA NA 1_555 P HOH 101 K O HOH 1_555 77.2 A VAL 103 A O VAL 103 1_555 A NA 402 F NA NA 1_555 P HOH 101 K O HOH 1_555 168.6 A ILE 106 A O ILE 106 1_555 A NA 402 F NA NA 1_555 P HOH 101 K O HOH 1_555 85.9 A HOH 510 I O HOH 1_555 A NA 402 F NA NA 1_555 P HOH 101 K O HOH 1_555 88.6 P DG 9 C OP1 DG 9 1_555 A NA 402 F NA NA 1_555 P HOH 101 K O HOH 1_555 89.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 150 A N ILE 150 A O SER 188 A O SER 188 A N THR 176 A N THR 176 A O LEU 194 A O LEU 194 A N LEU 195 A N LEU 195 A O ARG 258 A O ARG 258 A O ARG 253 A O ARG 253 A N CYS 239 A N CYS 239 A O MET 236 A O MET 236 A N SER 229 A N SER 229 A N THR 292 A N THR 292 A O ARG 299 A O ARG 299 1 A CG LYS 48 A CG LYS 48 1 Y 1 A CD LYS 48 A CD LYS 48 1 Y 1 A CE LYS 48 A CE LYS 48 1 Y 1 A NZ LYS 48 A NZ LYS 48 1 Y 1 A CD LYS 68 A CD LYS 68 1 Y 1 A CE LYS 68 A CE LYS 68 1 Y 1 A NZ LYS 68 A NZ LYS 68 1 Y 1 A CE LYS 81 A CE LYS 81 1 Y 1 A NZ LYS 81 A NZ LYS 81 1 Y 1 A CD GLN 90 A CD GLN 90 1 Y 1 A OE1 GLN 90 A OE1 GLN 90 1 Y 1 A NE2 GLN 90 A NE2 GLN 90 1 Y 1 A CD GLU 129 A CD GLU 129 1 Y 1 A OE1 GLU 129 A OE1 GLU 129 1 Y 1 A OE2 GLU 129 A OE2 GLU 129 1 Y 1 A CG GLU 186 A CG GLU 186 1 Y 1 A CD GLU 186 A CD GLU 186 1 Y 1 A OE1 GLU 186 A OE1 GLU 186 1 Y 1 A OE2 GLU 186 A OE2 GLU 186 1 Y 1 A OG SER 202 A OG SER 202 1 Y 1 A CG LYS 209 A CG LYS 209 1 Y 1 A CD LYS 209 A CD LYS 209 1 Y 1 A CE LYS 209 A CE LYS 209 1 Y 1 A NZ LYS 209 A NZ LYS 209 1 Y 1 A CD LYS 220 A CD LYS 220 1 Y 1 A CE LYS 220 A CE LYS 220 1 Y 1 A NZ LYS 220 A NZ LYS 220 1 Y 1 A CG LYS 248 A CG LYS 248 1 Y 1 A CD LYS 248 A CD LYS 248 1 Y 1 A CE LYS 248 A CE LYS 248 1 Y 1 A NZ LYS 248 A NZ LYS 248 1 Y 1 A CG1 ILE 277 A CG1 ILE 277 1 Y 1 A CG2 ILE 277 A CG2 ILE 277 1 Y 1 A CD1 ILE 277 A CD1 ILE 277 1 Y 1 A CG LYS 280 A CG LYS 280 1 Y 1 A CD LYS 280 A CD LYS 280 1 Y 1 A CE LYS 280 A CE LYS 280 1 Y 1 A NZ LYS 280 A NZ LYS 280 1 Y 1 A CG ARG 283 A CG ARG 283 1 Y 1 A CD ARG 283 A CD ARG 283 1 Y 1 A NE ARG 283 A NE ARG 283 1 Y 1 A CZ ARG 283 A CZ ARG 283 1 Y 1 A NH1 ARG 283 A NH1 ARG 283 1 Y 1 A NH2 ARG 283 A NH2 ARG 283 1 Y 1 A CG HIS 285 A CG HIS 285 1 Y 1 A ND1 HIS 285 A ND1 HIS 285 1 Y 1 A CD2 HIS 285 A CD2 HIS 285 1 Y 1 A CE1 HIS 285 A CE1 HIS 285 1 Y 1 A NE2 HIS 285 A NE2 HIS 285 1 Y 1 A CG LEU 287 A CG LEU 287 1 Y 1 A CD1 LEU 287 A CD1 LEU 287 1 Y 1 A CD2 LEU 287 A CD2 LEU 287 1 Y 1 A CG GLU 288 A CG GLU 288 1 Y 1 A CD GLU 288 A CD GLU 288 1 Y 1 A OE1 GLU 288 A OE1 GLU 288 1 Y 1 A OE2 GLU 288 A OE2 GLU 288 1 Y 1 A CG LYS 295 A CG LYS 295 1 Y 1 A CD LYS 295 A CD LYS 295 1 Y 1 A CE LYS 295 A CE LYS 295 1 Y 1 A NZ LYS 295 A NZ LYS 295 1 Y 1 A CG ARG 299 A CG ARG 299 1 Y 1 A CD ARG 299 A CD ARG 299 1 Y 1 A NE ARG 299 A NE ARG 299 1 Y 1 A CZ ARG 299 A CZ ARG 299 1 Y 1 A NH1 ARG 299 A NH1 ARG 299 1 Y 1 A NH2 ARG 299 A NH2 ARG 299 1 Y 1 A CG1 VAL 303 A CG1 VAL 303 1 Y 1 A CG2 VAL 303 A CG2 VAL 303 1 Y 1 A OG1 THR 304 A OG1 THR 304 1 Y 1 A CG2 THR 304 A CG2 THR 304 1 Y 1 A CD GLU 309 A CD GLU 309 1 Y 1 A OE1 GLU 309 A OE1 GLU 309 1 Y 1 A OE2 GLU 309 A OE2 GLU 309 1 Y 1 A CD LYS 317 A CD LYS 317 1 Y 1 A CE LYS 317 A CE LYS 317 1 Y 1 A NZ LYS 317 A NZ LYS 317 1 Y 1 A CG GLN 324 A CG GLN 324 1 Y 1 A CD GLN 324 A CD GLN 324 1 Y 1 A OE1 GLN 324 A OE1 GLN 324 1 Y 1 A NE2 GLN 324 A NE2 GLN 324 1 Y 1 A CG LYS 326 A CG LYS 326 1 Y 1 A CD LYS 326 A CD LYS 326 1 Y 1 A CE LYS 326 A CE LYS 326 1 Y 1 A NZ LYS 326 A NZ LYS 326 1 Y 1 A CD LYS 331 A CD LYS 331 1 Y 1 A CE LYS 331 A CE LYS 331 1 Y 1 A NZ LYS 331 A NZ LYS 331 1 Y 1 A C5' TTP 404 H C5' TTP 1 1 N 1 A C4' TTP 404 H C4' TTP 1 1 N 1 A O4' TTP 404 H O4' TTP 1 1 N 1 A C3' TTP 404 H C3' TTP 1 1 N 1 A O3' TTP 404 H O3' TTP 1 1 N 1 A C2' TTP 404 H C2' TTP 1 1 N 1 A C1' TTP 404 H C1' TTP 1 1 N 1 A N1 TTP 404 H N1 TTP 1 1 N 1 A C2 TTP 404 H C2 TTP 1 1 N 1 A O2 TTP 404 H O2 TTP 1 1 N 1 A N3 TTP 404 H N3 TTP 1 1 N 1 A C4 TTP 404 H C4 TTP 1 1 N 1 A O4 TTP 404 H O4 TTP 1 1 N 1 A C5 TTP 404 H C5 TTP 1 1 N 1 A C5M TTP 404 H C5M TTP 1 1 N 1 A C6 TTP 404 H C6 TTP 1 1 N 1 A MET 1 A MET 1 1 Y 1 A SER 2 A SER 2 1 Y 1 A LYS 3 A LYS 3 1 Y 1 A ARG 4 A ARG 4 1 Y 1 A LYS 5 A LYS 5 1 Y 1 A ALA 6 A ALA 6 1 Y 1 A PRO 7 A PRO 7 1 Y 1 A GLN 8 A GLN 8 1 Y 1 A GLU 9 A GLU 9 1 Y 1 A THR 10 A THR 10 1 Y 1 A GLU 203 A GLU 203 1 Y 1 A SER 204 A SER 204 1 Y 1 A THR 205 A THR 205 1 Y 1 A LYS 206 A LYS 206 1 Y 1 A GLN 207 A GLN 207 1 Y 1 A PRO 208 A PRO 208 1 Y 1 A LYS 244 A LYS 244 1 Y 1 A ASN 245 A ASN 245 1 Y 1 A ASP 246 A ASP 246 1 Y 1 A GLU 247 A GLU 247 1 Y 1 A GLU 335 A GLU 335 1 Y 1 2.49 0.30 108.30 110.79 T T T O4' C1' N1 DC DC DC 5 5 5 N 1 A CYS 178 -102.41 -144.66 87.650 27.3873 2.450 0.2276 0.1771 0.1822 2.3940 13.7370 3358 33785 9.9400 96.8500 1.000 0.500 0.8285 0.2700 1 1.340 Isomorphous replacement 24.5000 0.9000 1.1100 ML FLAT BULK SOLVENT MODEL 2.3940 13.7370 223 3295 16 627 2429 0.002 3207 0.632 4463 0.040 495 0.002 467 17.793 1228 0.2718 0.2309 2.4285 90 959 1049 24 72.0000 0.3050 0.2323 2.4645 118 1132 1250 24 85.0000 0.3073 0.2320 2.5028 124 1187 1311 24 91.0000 0.3011 0.2300 2.5436 140 1239 1379 24 93.0000 0.2792 0.2377 2.5871 141 1240 1381 24 97.0000 0.3321 0.2153 2.6339 152 1285 1437 24 98.0000 0.2443 0.2072 2.6842 135 1289 1424 24 99.0000 0.2904 0.2114 2.7385 173 1304 1477 24 99.0000 0.3134 0.1989 2.7976 163 1222 1385 24 99.0000 0.2930 0.2083 2.8621 129 1368 1497 24 100.0000 0.2621 0.1971 2.9330 114 1294 1408 24 99.0000 0.2981 0.2159 3.0115 132 1347 1479 24 100.0000 0.2269 0.2126 3.0991 135 1257 1392 24 99.0000 0.2867 0.1971 3.1979 165 1314 1479 24 99.0000 0.2651 0.1838 3.3107 158 1282 1440 24 100.0000 0.2489 0.1730 3.4413 115 1346 1461 24 99.0000 0.2380 0.1649 3.5952 128 1269 1397 24 100.0000 0.2057 0.1595 3.7810 147 1295 1442 24 99.0000 0.1967 0.1498 4.0124 165 1307 1472 24 99.0000 0.1735 0.1357 4.3132 151 1273 1424 24 100.0000 0.1575 0.1361 4.7311 128 1311 1439 24 99.0000 0.2001 0.1462 5.3794 132 1344 1476 24 100.0000 0.1805 0.1624 6.6471 141 1282 1423 24 100.0000 0.1648 0.1632 13.7369 182 1281 1463 24 99.0000 30.470 2.394 14.000 4M9H 0.062 1.134 1 15.500 99.400 0.260 2.400 2.490 1695 1.093 1 95.300 0.226 2.490 2.580 1739 1.110 1 99.300 0.186 2.580 2.700 1752 1.144 1 99.900 0.149 2.700 2.840 1770 1.079 1 100.000 0.119 2.840 3.020 1807 1.107 1 100.000 0.083 3.020 3.250 1749 1.222 1 100.000 0.057 3.250 3.570 1789 1.185 1 100.000 0.047 3.570 4.080 1768 1.247 1 100.000 0.038 4.080 5.090 1799 1.091 1 100.000 0.033 5.090 14.000 1814 1.043 1 99.900 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO program data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK program refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.8.1_1168 data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 data collection MAR345 DNA Polymerase Beta E295K Soaked with dTTP 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 6 N N 7 N N 8 N N 8 N N 8 N N 8 N N A ASN 12 A ASN 12 HELX_P A VAL 29 A VAL 29 1 1 18 A ALA 32 A ALA 32 HELX_P A LYS 48 A LYS 48 1 2 17 A SER 55 A SER 55 HELX_P A LYS 61 A LYS 61 1 3 7 A GLY 66 A GLY 66 HELX_P A GLY 80 A GLY 80 1 4 15 A LEU 82 A LEU 82 HELX_P A ASP 91 A ASP 91 1 5 10 A ASP 91 A ASP 91 HELX_P A THR 101 A THR 101 1 6 11 A GLY 107 A GLY 107 HELX_P A GLU 117 A GLU 117 1 7 11 A THR 121 A THR 121 HELX_P A LYS 127 A LYS 127 1 8 7 A ASN 128 A ASN 128 HELX_P A LEU 132 A LEU 132 5 9 5 A ASN 133 A ASN 133 HELX_P A TYR 142 A TYR 142 1 10 10 A TYR 142 A TYR 142 HELX_P A GLU 147 A GLU 147 1 11 6 A ARG 152 A ARG 152 HELX_P A ASP 170 A ASP 170 1 12 19 A CYS 178 A CYS 178 HELX_P A ARG 183 A ARG 183 1 13 6 A LEU 210 A LEU 210 HELX_P A VAL 221 A VAL 221 1 14 12 A PRO 261 A PRO 261 HELX_P A ASP 263 A ASP 263 5 15 3 A GLN 264 A GLN 264 HELX_P A GLY 274 A GLY 274 1 16 11 A SER 275 A SER 275 HELX_P A LYS 289 A LYS 289 1 17 15 A SER 315 A SER 315 HELX_P A ILE 323 A ILE 323 1 18 9 A GLU 329 A GLU 329 HELX_P A ARG 333 A ARG 333 5 19 5 metalc 2.468 A LYS 60 A O LYS 60 1_555 A NA 401 E NA NA 1_555 metalc 2.501 A LEU 62 A O LEU 62 1_555 A NA 401 E NA NA 1_555 metalc 2.420 A VAL 65 A O VAL 65 1_555 A NA 401 E NA NA 1_555 metalc 2.349 A THR 101 A O THR 101 1_555 A NA 402 F NA NA 1_555 metalc 2.438 A VAL 103 A O VAL 103 1_555 A NA 402 F NA NA 1_555 metalc 2.417 A ILE 106 A O ILE 106 1_555 A NA 402 F NA NA 1_555 metalc 2.588 A NA 401 E NA NA 1_555 A HOH 596 I O HOH 1_555 metalc 2.805 A NA 401 E NA NA 1_555 D DC 3 D OP1 DC 3 1_555 metalc 2.400 A NA 401 E NA NA 1_555 D HOH 102 L O HOH 1_555 metalc 2.574 A NA 402 F NA NA 1_555 A HOH 510 I O HOH 1_555 metalc 2.321 A NA 402 F NA NA 1_555 P DG 9 C OP1 DG 9 1_555 metalc 2.536 A NA 402 F NA NA 1_555 P HOH 101 K O HOH 1_555 hydrog WATSON-CRICK T DC 1 B N3 DC 1 1_555 D DG 5 D N1 DG 5 1_555 hydrog WATSON-CRICK T DC 1 B N4 DC 1 1_555 D DG 5 D O6 DG 5 1_555 hydrog WATSON-CRICK T DC 1 B O2 DC 1 1_555 D DG 5 D N2 DG 5 1_555 hydrog WATSON-CRICK T DC 2 B N3 DC 2 1_555 D DG 4 D N1 DG 4 1_555 hydrog WATSON-CRICK T DC 2 B N4 DC 2 1_555 D DG 4 D O6 DG 4 1_555 hydrog WATSON-CRICK T DC 2 B O2 DC 2 1_555 D DG 4 D N2 DG 4 1_555 hydrog WATSON-CRICK T DG 3 B N1 DG 3 1_555 D DC 3 D N3 DC 3 1_555 hydrog WATSON-CRICK T DG 3 B N2 DG 3 1_555 D DC 3 D O2 DC 3 1_555 hydrog WATSON-CRICK T DG 3 B O6 DG 3 1_555 D DC 3 D N4 DC 3 1_555 hydrog WATSON-CRICK T DA 4 B N1 DA 4 1_555 D DT 2 D N3 DT 2 1_555 hydrog WATSON-CRICK T DA 4 B N6 DA 4 1_555 D DT 2 D O4 DT 2 1_555 hydrog WATSON-CRICK T DC 5 B N3 DC 5 1_555 D DG 1 D N1 DG 1 1_555 hydrog WATSON-CRICK T DC 5 B N4 DC 5 1_555 D DG 1 D O6 DG 1 1_555 hydrog WATSON-CRICK T DC 5 B O2 DC 5 1_555 D DG 1 D N2 DG 1 1_555 hydrog WATSON-CRICK T DG 7 B N1 DG 7 1_555 P DC 10 C N3 DC 10 1_555 hydrog WATSON-CRICK T DG 7 B N2 DG 7 1_555 P DC 10 C O2 DC 10 1_555 hydrog WATSON-CRICK T DG 7 B O6 DG 7 1_555 P DC 10 C N4 DC 10 1_555 hydrog WATSON-CRICK T DC 8 B N3 DC 8 1_555 P DG 9 C N1 DG 9 1_555 hydrog WATSON-CRICK T DC 8 B N4 DC 8 1_555 P DG 9 C O6 DG 9 1_555 hydrog WATSON-CRICK T DC 8 B O2 DC 8 1_555 P DG 9 C N2 DG 9 1_555 hydrog WATSON-CRICK T DG 9 B N1 DG 9 1_555 P DC 8 C N3 DC 8 1_555 hydrog WATSON-CRICK T DG 9 B N2 DG 9 1_555 P DC 8 C O2 DC 8 1_555 hydrog WATSON-CRICK T DG 9 B O6 DG 9 1_555 P DC 8 C N4 DC 8 1_555 hydrog WATSON-CRICK T DC 10 B N3 DC 10 1_555 P DG 7 C N1 DG 7 1_555 hydrog WATSON-CRICK T DC 10 B N4 DC 10 1_555 P DG 7 C O6 DG 7 1_555 hydrog WATSON-CRICK T DC 10 B O2 DC 10 1_555 P DG 7 C N2 DG 7 1_555 hydrog WATSON-CRICK T DA 11 B N1 DA 11 1_555 P DT 6 C N3 DT 6 1_555 hydrog WATSON-CRICK T DA 11 B N6 DA 11 1_555 P DT 6 C O4 DT 6 1_555 hydrog WATSON-CRICK T DT 12 B N3 DT 12 1_555 P DA 5 C N1 DA 5 1_555 hydrog WATSON-CRICK T DT 12 B O4 DT 12 1_555 P DA 5 C N6 DA 5 1_555 hydrog WATSON-CRICK T DC 13 B N3 DC 13 1_555 P DG 4 C N1 DG 4 1_555 hydrog WATSON-CRICK T DC 13 B N4 DC 13 1_555 P DG 4 C O6 DG 4 1_555 hydrog WATSON-CRICK T DC 13 B O2 DC 13 1_555 P DG 4 C N2 DG 4 1_555 hydrog WATSON-CRICK T DA 14 B N1 DA 14 1_555 P DT 3 C N3 DT 3 1_555 hydrog WATSON-CRICK T DA 14 B N6 DA 14 1_555 P DT 3 C O4 DT 3 1_555 hydrog WATSON-CRICK T DG 15 B N1 DG 15 1_555 P DC 2 C N3 DC 2 1_555 hydrog WATSON-CRICK T DG 15 B N2 DG 15 1_555 P DC 2 C O2 DC 2 1_555 hydrog WATSON-CRICK T DG 15 B O6 DG 15 1_555 P DC 2 C N4 DC 2 1_555 hydrog WATSON-CRICK T DC 16 B N3 DC 16 1_555 P DG 1 C N1 DG 1 1_555 hydrog WATSON-CRICK T DC 16 B N4 DC 16 1_555 P DG 1 C O6 DG 1 1_555 hydrog WATSON-CRICK T DC 16 B O2 DC 16 1_555 P DG 1 C N2 DG 1 1_555 TRANSFERASE/DNA DNA Polymerase, Lyase, DNA complex, TRANSFERASE-DNA complex A GLY 274 A GLY 274 1 A SER 275 A SER 275 1.34 DPOLB_HUMAN UNP 1 1 P06746 MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATG KLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQD IVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQ LPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIF DYIQWKYREPKDRSE 4M9H PDB 2 4M9H CCGACAGCGCATCAGC 4M9H PDB 3 4M9H GCTGATGCGC 4M9H PDB 4 4M9H GTCGG 1 335 4M9H 1 335 P06746 A 1 1 335 1 16 4M9H 1 16 4M9H T 2 1 16 1 10 4M9H 1 10 4M9H P 3 1 10 1 5 4M9H 1 5 4M9H D 4 1 5 1 GLU engineered mutation LYS 295 4M9H A P06746 UNP 295 295 2 5 2 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel A ILE 150 A ILE 150 A PRO 151 A PRO 151 A SER 187 A SER 187 A SER 188 A SER 188 A ILE 174 A ILE 174 A VAL 177 A VAL 177 A MET 191 A MET 191 A THR 196 A THR 196 A ARG 253 A ARG 253 A LEU 259 A LEU 259 A LYS 234 A LYS 234 A CYS 239 A CYS 239 A ILE 224 A ILE 224 A LYS 230 A LYS 230 A PHE 291 A PHE 291 A ILE 293 A ILE 293 A ILE 298 A ILE 298 A PRO 300 A PRO 300 BINDING SITE FOR RESIDUE NA A 401 A NA 401 Software 6 BINDING SITE FOR RESIDUE NA A 402 A NA 402 Software 6 BINDING SITE FOR RESIDUE CL A 403 A CL 403 Software 1 BINDING SITE FOR RESIDUE TTP A 404 A TTP 404 Software 8 A LYS 60 A LYS 60 6 1_555 A LEU 62 A LEU 62 6 1_555 A VAL 65 A VAL 65 6 1_555 A HOH 596 I HOH 6 1_555 D DC 3 D DC 3 6 1_555 D HOH 102 L HOH 6 1_555 A THR 101 A THR 101 6 1_555 A VAL 103 A VAL 103 6 1_555 A ILE 106 A ILE 106 6 1_555 A HOH 510 I HOH 6 1_555 P DG 9 C DG 9 6 1_555 P HOH 101 K HOH 6 1_555 A THR 297 A THR 297 1 1_555 A ARG 149 A ARG 149 8 1_555 A SER 180 A SER 180 8 1_555 A ARG 183 A ARG 183 8 1_555 A GLY 189 A GLY 189 8 1_555 A ASP 190 A ASP 190 8 1_555 A HOH 588 I HOH 8 1_555 A HOH 589 I HOH 8 1_555 P DC 10 C DC 10 8 1_555 4 P 1 21 1