0.018369
0.000000
0.000000
0.000000
0.013676
0.000000
0.000000
0.000000
0.008401
0.00000
0.00000
0.00000
Shuman, S.
Das, U.
Wang, L.K.
Smith, P.
Jacewicz, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
54.440
73.120
119.040
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N5 O11 P2
443.201
n
GUANOSINE-5'-DIPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
O
N
89
N
P
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
C
N
94
R
C
N
95
N
O
N
96
S
C
N
97
N
O
N
98
N
C
N
99
R
C
N
100
N
N
N
101
N
C
N
102
N
O
N
103
N
N
N
104
N
C
N
105
N
N
N
106
N
C
N
107
N
C
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
O
N
123
N
P
N
124
N
O
N
125
N
O
N
126
N
O
N
127
N
C
N
128
R
C
N
129
N
O
N
130
S
C
N
131
N
O
N
132
N
C
N
133
R
C
Y
134
N
N
Y
135
N
C
Y
136
N
N
Y
137
N
C
N
138
N
C
N
139
N
O
N
140
N
N
N
141
N
C
N
142
N
N
N
143
N
N
Y
144
N
C
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
P
N
161
N
O
N
162
N
O
N
163
N
O
N
164
N
C
N
165
R
C
N
166
N
O
N
167
S
C
N
168
N
O
N
169
N
C
N
170
R
C
N
171
N
N
N
172
N
C
N
173
N
O
N
174
N
N
N
175
N
C
N
176
N
O
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
P
N
196
N
O
N
197
N
O
N
198
N
O
N
199
N
O
N
200
N
P
N
201
N
O
N
202
N
O
N
203
N
O
N
204
N
C
N
205
R
C
N
206
N
O
N
207
S
C
N
208
N
O
N
209
R
C
N
210
N
O
N
211
R
C
Y
212
N
N
Y
213
N
C
Y
214
N
N
Y
215
N
C
N
216
N
C
N
217
N
O
N
218
N
N
N
219
N
C
N
220
N
N
N
221
N
N
Y
222
N
C
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
N
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
O
N
266
N
O
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
Y
292
N
C
Y
293
N
N
Y
294
N
C
Y
295
N
C
Y
296
N
N
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
S
C
N
316
N
C
N
317
N
C
N
318
N
C
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
C
N
363
N
N
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
S
C
N
382
N
C
N
383
N
O
N
384
N
C
N
385
N
C
N
386
N
S
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
MG
N
401
N
N
N
402
S
C
N
403
N
C
N
404
N
O
N
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
C
Y
411
N
C
N
412
N
O
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
N
429
N
C
N
430
N
C
N
431
N
O
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
N
N
442
S
C
N
443
N
C
N
444
N
O
N
445
N
C
N
446
N
O
N
447
N
O
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
R
C
N
460
N
O
N
461
N
C
N
462
N
O
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
N
N
473
S
C
N
474
N
C
N
475
N
O
N
476
N
C
Y
477
N
C
Y
478
N
C
Y
479
N
C
Y
480
N
C
Y
481
N
C
Y
482
N
C
N
483
N
O
N
484
N
O
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
N
N
497
S
C
N
498
N
C
N
499
N
O
N
500
N
C
N
501
N
C
N
502
N
C
N
503
N
O
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
Y
141
N
sing
Y
142
N
sing
Y
143
N
doub
N
144
N
sing
Y
145
N
sing
N
146
N
sing
Y
147
N
doub
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
Y
223
N
sing
Y
224
N
sing
Y
225
N
doub
N
226
N
sing
Y
227
N
sing
N
228
N
sing
Y
229
N
doub
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
sing
Y
297
N
doub
Y
298
N
doub
N
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
Y
404
N
doub
Y
405
N
sing
Y
406
N
sing
N
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
doub
N
411
N
sing
Y
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
doub
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
doub
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
Y
473
N
doub
Y
474
N
sing
Y
475
N
sing
N
476
N
sing
Y
477
N
doub
N
478
N
sing
Y
479
N
doub
N
480
N
sing
Y
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
doub
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
42
1152
1161
10.1093/nar/gkt936
24150947
Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP*Mg2+ and 5'-OH oligonucleotide and a product complex with GDP*Mg2+ and 5'-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition.
2014
10.2210/pdb4mde/pdb
pdb_00004mde
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
130
1
PIXEL
2013-08-14
DECTRIS PILATUS 6M
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
X25
NSLS
1.1
SYNCHROTRON
NSLS BEAMLINE X25
19487.328
Metallophosphoesterase
D38N, L137M
2
man
polymer
1470.998
DNA (5'-D(P*CP*CP*TP*GP*T)-3')
2
syn
polymer
443.201
GUANOSINE-5'-DIPHOSPHATE
2
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
18.015
water
440
nat
water
no
no
SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSNFCRGLVSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA
TNVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE
EVEEVVFERQP
SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSNFCRGLVSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA
TNVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE
EVEEVVFERQP
A,B
polypeptide(L)
no
no
(DC)(DC)(DT)(DG)(DT)
CCTGT
C,D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 27405 / DSM 1237
sample
Cthe_2768
203119
Clostridium thermocellum
562
Escherichia coli
1
2.83
56.48
VAPOR DIFFUSION, HANGING DROP
5.0
100 mM sodium citrate, pH 5.0, 2 mM guanosine diphosphate, 100mM magnesium chloride,18-24% PEG 6000,1.1 mM short DNA strand , VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2013-11-06
1
1
2014-02-12
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-08-22
REL
REL
GDP
GUANOSINE-5'-DIPHOSPHATE
MG
MAGNESIUM ION
HOH
water
Obtained from commercial synthetic source
sample
GDP
1001
3
GDP
GDP
1001
A
MG
1002
4
MG
MG
1002
A
GDP
1001
3
GDP
GDP
1001
B
MG
1002
4
MG
MG
1002
B
HOH
1
5
HOH
HOH
1101
A
HOH
2
5
HOH
HOH
1102
A
HOH
3
5
HOH
HOH
1103
A
HOH
7
5
HOH
HOH
1104
A
HOH
8
5
HOH
HOH
1105
A
HOH
9
5
HOH
HOH
1106
A
HOH
11
5
HOH
HOH
1107
A
HOH
12
5
HOH
HOH
1108
A
HOH
13
5
HOH
HOH
1109
A
HOH
14
5
HOH
HOH
1110
A
HOH
15
5
HOH
HOH
1111
A
HOH
16
5
HOH
HOH
1112
A
HOH
18
5
HOH
HOH
1113
A
HOH
19
5
HOH
HOH
1114
A
HOH
24
5
HOH
HOH
1115
A
HOH
25
5
HOH
HOH
1116
A
HOH
26
5
HOH
HOH
1117
A
HOH
27
5
HOH
HOH
1118
A
HOH
28
5
HOH
HOH
1119
A
HOH
29
5
HOH
HOH
1120
A
HOH
30
5
HOH
HOH
1121
A
HOH
39
5
HOH
HOH
1122
A
HOH
40
5
HOH
HOH
1123
A
HOH
44
5
HOH
HOH
1124
A
HOH
45
5
HOH
HOH
1125
A
HOH
46
5
HOH
HOH
1126
A
HOH
48
5
HOH
HOH
1127
A
HOH
52
5
HOH
HOH
1128
A
HOH
56
5
HOH
HOH
1129
A
HOH
59
5
HOH
HOH
1130
A
HOH
60
5
HOH
HOH
1131
A
HOH
63
5
HOH
HOH
1132
A
HOH
65
5
HOH
HOH
1133
A
HOH
66
5
HOH
HOH
1134
A
HOH
67
5
HOH
HOH
1135
A
HOH
69
5
HOH
HOH
1136
A
HOH
70
5
HOH
HOH
1137
A
HOH
71
5
HOH
HOH
1138
A
HOH
72
5
HOH
HOH
1139
A
HOH
73
5
HOH
HOH
1140
A
HOH
75
5
HOH
HOH
1141
A
HOH
76
5
HOH
HOH
1142
A
HOH
78
5
HOH
HOH
1143
A
HOH
86
5
HOH
HOH
1144
A
HOH
87
5
HOH
HOH
1145
A
HOH
89
5
HOH
HOH
1146
A
HOH
91
5
HOH
HOH
1147
A
HOH
98
5
HOH
HOH
1148
A
HOH
99
5
HOH
HOH
1149
A
HOH
103
5
HOH
HOH
1150
A
HOH
104
5
HOH
HOH
1151
A
HOH
106
5
HOH
HOH
1152
A
HOH
107
5
HOH
HOH
1153
A
HOH
108
5
HOH
HOH
1154
A
HOH
109
5
HOH
HOH
1155
A
HOH
110
5
HOH
HOH
1156
A
HOH
111
5
HOH
HOH
1157
A
HOH
114
5
HOH
HOH
1158
A
HOH
116
5
HOH
HOH
1159
A
HOH
117
5
HOH
HOH
1160
A
HOH
121
5
HOH
HOH
1161
A
HOH
122
5
HOH
HOH
1162
A
HOH
123
5
HOH
HOH
1163
A
HOH
127
5
HOH
HOH
1164
A
HOH
134
5
HOH
HOH
1165
A
HOH
137
5
HOH
HOH
1166
A
HOH
139
5
HOH
HOH
1167
A
HOH
141
5
HOH
HOH
1168
A
HOH
142
5
HOH
HOH
1169
A
HOH
145
5
HOH
HOH
1170
A
HOH
147
5
HOH
HOH
1171
A
HOH
149
5
HOH
HOH
1172
A
HOH
151
5
HOH
HOH
1173
A
HOH
153
5
HOH
HOH
1174
A
HOH
157
5
HOH
HOH
1175
A
HOH
158
5
HOH
HOH
1176
A
HOH
159
5
HOH
HOH
1177
A
HOH
160
5
HOH
HOH
1178
A
HOH
161
5
HOH
HOH
1179
A
HOH
163
5
HOH
HOH
1180
A
HOH
164
5
HOH
HOH
1181
A
HOH
168
5
HOH
HOH
1182
A
HOH
172
5
HOH
HOH
1183
A
HOH
174
5
HOH
HOH
1184
A
HOH
178
5
HOH
HOH
1185
A
HOH
181
5
HOH
HOH
1186
A
HOH
182
5
HOH
HOH
1187
A
HOH
185
5
HOH
HOH
1188
A
HOH
186
5
HOH
HOH
1189
A
HOH
189
5
HOH
HOH
1190
A
HOH
190
5
HOH
HOH
1191
A
HOH
193
5
HOH
HOH
1192
A
HOH
195
5
HOH
HOH
1193
A
HOH
198
5
HOH
HOH
1194
A
HOH
200
5
HOH
HOH
1195
A
HOH
201
5
HOH
HOH
1196
A
HOH
202
5
HOH
HOH
1197
A
HOH
203
5
HOH
HOH
1198
A
HOH
204
5
HOH
HOH
1199
A
HOH
205
5
HOH
HOH
1200
A
HOH
209
5
HOH
HOH
1201
A
HOH
211
5
HOH
HOH
1202
A
HOH
212
5
HOH
HOH
1203
A
HOH
218
5
HOH
HOH
1204
A
HOH
219
5
HOH
HOH
1205
A
HOH
222
5
HOH
HOH
1206
A
HOH
223
5
HOH
HOH
1207
A
HOH
224
5
HOH
HOH
1208
A
HOH
226
5
HOH
HOH
1209
A
HOH
227
5
HOH
HOH
1210
A
HOH
228
5
HOH
HOH
1211
A
HOH
230
5
HOH
HOH
1212
A
HOH
238
5
HOH
HOH
1213
A
HOH
240
5
HOH
HOH
1214
A
HOH
241
5
HOH
HOH
1215
A
HOH
242
5
HOH
HOH
1216
A
HOH
244
5
HOH
HOH
1217
A
HOH
247
5
HOH
HOH
1218
A
HOH
249
5
HOH
HOH
1219
A
HOH
251
5
HOH
HOH
1220
A
HOH
252
5
HOH
HOH
1221
A
HOH
256
5
HOH
HOH
1222
A
HOH
257
5
HOH
HOH
1223
A
HOH
260
5
HOH
HOH
1224
A
HOH
262
5
HOH
HOH
1225
A
HOH
263
5
HOH
HOH
1226
A
HOH
269
5
HOH
HOH
1227
A
HOH
270
5
HOH
HOH
1228
A
HOH
271
5
HOH
HOH
1229
A
HOH
273
5
HOH
HOH
1230
A
HOH
275
5
HOH
HOH
1231
A
HOH
276
5
HOH
HOH
1232
A
HOH
277
5
HOH
HOH
1233
A
HOH
278
5
HOH
HOH
1234
A
HOH
279
5
HOH
HOH
1235
A
HOH
282
5
HOH
HOH
1236
A
HOH
283
5
HOH
HOH
1237
A
HOH
284
5
HOH
HOH
1238
A
HOH
285
5
HOH
HOH
1239
A
HOH
286
5
HOH
HOH
1240
A
HOH
289
5
HOH
HOH
1241
A
HOH
291
5
HOH
HOH
1242
A
HOH
292
5
HOH
HOH
1243
A
HOH
293
5
HOH
HOH
1244
A
HOH
298
5
HOH
HOH
1245
A
HOH
308
5
HOH
HOH
1246
A
HOH
309
5
HOH
HOH
1247
A
HOH
314
5
HOH
HOH
1248
A
HOH
315
5
HOH
HOH
1249
A
HOH
316
5
HOH
HOH
1250
A
HOH
317
5
HOH
HOH
1251
A
HOH
321
5
HOH
HOH
1252
A
HOH
323
5
HOH
HOH
1253
A
HOH
328
5
HOH
HOH
1254
A
HOH
329
5
HOH
HOH
1255
A
HOH
334
5
HOH
HOH
1256
A
HOH
337
5
HOH
HOH
1257
A
HOH
341
5
HOH
HOH
1258
A
HOH
342
5
HOH
HOH
1259
A
HOH
345
5
HOH
HOH
1260
A
HOH
347
5
HOH
HOH
1261
A
HOH
348
5
HOH
HOH
1262
A
HOH
349
5
HOH
HOH
1263
A
HOH
352
5
HOH
HOH
1264
A
HOH
354
5
HOH
HOH
1265
A
HOH
356
5
HOH
HOH
1266
A
HOH
358
5
HOH
HOH
1267
A
HOH
359
5
HOH
HOH
1268
A
HOH
361
5
HOH
HOH
1269
A
HOH
365
5
HOH
HOH
1270
A
HOH
367
5
HOH
HOH
1271
A
HOH
368
5
HOH
HOH
1272
A
HOH
371
5
HOH
HOH
1273
A
HOH
378
5
HOH
HOH
1274
A
HOH
380
5
HOH
HOH
1275
A
HOH
382
5
HOH
HOH
1276
A
HOH
383
5
HOH
HOH
1277
A
HOH
384
5
HOH
HOH
1278
A
HOH
387
5
HOH
HOH
1279
A
HOH
388
5
HOH
HOH
1280
A
HOH
391
5
HOH
HOH
1281
A
HOH
394
5
HOH
HOH
1282
A
HOH
395
5
HOH
HOH
1283
A
HOH
403
5
HOH
HOH
1284
A
HOH
404
5
HOH
HOH
1285
A
HOH
405
5
HOH
HOH
1286
A
HOH
406
5
HOH
HOH
1287
A
HOH
408
5
HOH
HOH
1288
A
HOH
409
5
HOH
HOH
1289
A
HOH
411
5
HOH
HOH
1290
A
HOH
412
5
HOH
HOH
1291
A
HOH
414
5
HOH
HOH
1292
A
HOH
417
5
HOH
HOH
1293
A
HOH
418
5
HOH
HOH
1294
A
HOH
419
5
HOH
HOH
1295
A
HOH
420
5
HOH
HOH
1296
A
HOH
421
5
HOH
HOH
1297
A
HOH
425
5
HOH
HOH
1298
A
HOH
429
5
HOH
HOH
1299
A
HOH
430
5
HOH
HOH
1300
A
HOH
437
5
HOH
HOH
1301
A
HOH
440
5
HOH
HOH
1302
A
HOH
4
5
HOH
HOH
1101
B
HOH
5
5
HOH
HOH
1102
B
HOH
6
5
HOH
HOH
1103
B
HOH
10
5
HOH
HOH
1104
B
HOH
21
5
HOH
HOH
1105
B
HOH
23
5
HOH
HOH
1106
B
HOH
31
5
HOH
HOH
1107
B
HOH
32
5
HOH
HOH
1108
B
HOH
35
5
HOH
HOH
1109
B
HOH
37
5
HOH
HOH
1110
B
HOH
38
5
HOH
HOH
1111
B
HOH
41
5
HOH
HOH
1112
B
HOH
42
5
HOH
HOH
1113
B
HOH
43
5
HOH
HOH
1114
B
HOH
47
5
HOH
HOH
1115
B
HOH
49
5
HOH
HOH
1116
B
HOH
50
5
HOH
HOH
1117
B
HOH
51
5
HOH
HOH
1118
B
HOH
54
5
HOH
HOH
1119
B
HOH
55
5
HOH
HOH
1120
B
HOH
57
5
HOH
HOH
1121
B
HOH
58
5
HOH
HOH
1122
B
HOH
62
5
HOH
HOH
1123
B
HOH
64
5
HOH
HOH
1124
B
HOH
68
5
HOH
HOH
1125
B
HOH
74
5
HOH
HOH
1126
B
HOH
77
5
HOH
HOH
1127
B
HOH
79
5
HOH
HOH
1128
B
HOH
80
5
HOH
HOH
1129
B
HOH
81
5
HOH
HOH
1130
B
HOH
82
5
HOH
HOH
1131
B
HOH
83
5
HOH
HOH
1132
B
HOH
84
5
HOH
HOH
1133
B
HOH
85
5
HOH
HOH
1134
B
HOH
88
5
HOH
HOH
1135
B
HOH
90
5
HOH
HOH
1136
B
HOH
92
5
HOH
HOH
1137
B
HOH
93
5
HOH
HOH
1138
B
HOH
95
5
HOH
HOH
1139
B
HOH
96
5
HOH
HOH
1140
B
HOH
97
5
HOH
HOH
1141
B
HOH
100
5
HOH
HOH
1142
B
HOH
101
5
HOH
HOH
1143
B
HOH
102
5
HOH
HOH
1144
B
HOH
112
5
HOH
HOH
1145
B
HOH
115
5
HOH
HOH
1146
B
HOH
118
5
HOH
HOH
1147
B
HOH
119
5
HOH
HOH
1148
B
HOH
120
5
HOH
HOH
1149
B
HOH
125
5
HOH
HOH
1150
B
HOH
126
5
HOH
HOH
1151
B
HOH
128
5
HOH
HOH
1152
B
HOH
129
5
HOH
HOH
1153
B
HOH
130
5
HOH
HOH
1154
B
HOH
131
5
HOH
HOH
1155
B
HOH
132
5
HOH
HOH
1156
B
HOH
135
5
HOH
HOH
1157
B
HOH
138
5
HOH
HOH
1158
B
HOH
143
5
HOH
HOH
1159
B
HOH
144
5
HOH
HOH
1160
B
HOH
148
5
HOH
HOH
1161
B
HOH
150
5
HOH
HOH
1162
B
HOH
154
5
HOH
HOH
1163
B
HOH
155
5
HOH
HOH
1164
B
HOH
156
5
HOH
HOH
1165
B
HOH
162
5
HOH
HOH
1166
B
HOH
167
5
HOH
HOH
1167
B
HOH
169
5
HOH
HOH
1168
B
HOH
175
5
HOH
HOH
1169
B
HOH
176
5
HOH
HOH
1170
B
HOH
177
5
HOH
HOH
1171
B
HOH
179
5
HOH
HOH
1172
B
HOH
180
5
HOH
HOH
1173
B
HOH
183
5
HOH
HOH
1174
B
HOH
184
5
HOH
HOH
1175
B
HOH
187
5
HOH
HOH
1176
B
HOH
191
5
HOH
HOH
1177
B
HOH
192
5
HOH
HOH
1178
B
HOH
196
5
HOH
HOH
1179
B
HOH
197
5
HOH
HOH
1180
B
HOH
199
5
HOH
HOH
1181
B
HOH
208
5
HOH
HOH
1182
B
HOH
210
5
HOH
HOH
1183
B
HOH
214
5
HOH
HOH
1184
B
HOH
215
5
HOH
HOH
1185
B
HOH
216
5
HOH
HOH
1186
B
HOH
217
5
HOH
HOH
1187
B
HOH
220
5
HOH
HOH
1188
B
HOH
225
5
HOH
HOH
1189
B
HOH
229
5
HOH
HOH
1190
B
HOH
231
5
HOH
HOH
1191
B
HOH
232
5
HOH
HOH
1192
B
HOH
233
5
HOH
HOH
1193
B
HOH
234
5
HOH
HOH
1194
B
HOH
235
5
HOH
HOH
1195
B
HOH
236
5
HOH
HOH
1196
B
HOH
237
5
HOH
HOH
1197
B
HOH
243
5
HOH
HOH
1198
B
HOH
245
5
HOH
HOH
1199
B
HOH
246
5
HOH
HOH
1200
B
HOH
248
5
HOH
HOH
1201
B
HOH
250
5
HOH
HOH
1202
B
HOH
253
5
HOH
HOH
1203
B
HOH
254
5
HOH
HOH
1204
B
HOH
255
5
HOH
HOH
1205
B
HOH
261
5
HOH
HOH
1206
B
HOH
264
5
HOH
HOH
1207
B
HOH
265
5
HOH
HOH
1208
B
HOH
266
5
HOH
HOH
1209
B
HOH
267
5
HOH
HOH
1210
B
HOH
268
5
HOH
HOH
1211
B
HOH
274
5
HOH
HOH
1212
B
HOH
280
5
HOH
HOH
1213
B
HOH
281
5
HOH
HOH
1214
B
HOH
287
5
HOH
HOH
1215
B
HOH
288
5
HOH
HOH
1216
B
HOH
290
5
HOH
HOH
1217
B
HOH
294
5
HOH
HOH
1218
B
HOH
296
5
HOH
HOH
1219
B
HOH
297
5
HOH
HOH
1220
B
HOH
299
5
HOH
HOH
1221
B
HOH
300
5
HOH
HOH
1222
B
HOH
301
5
HOH
HOH
1223
B
HOH
302
5
HOH
HOH
1224
B
HOH
303
5
HOH
HOH
1225
B
HOH
304
5
HOH
HOH
1226
B
HOH
305
5
HOH
HOH
1227
B
HOH
306
5
HOH
HOH
1228
B
HOH
313
5
HOH
HOH
1229
B
HOH
318
5
HOH
HOH
1230
B
HOH
319
5
HOH
HOH
1231
B
HOH
320
5
HOH
HOH
1232
B
HOH
322
5
HOH
HOH
1233
B
HOH
324
5
HOH
HOH
1234
B
HOH
325
5
HOH
HOH
1235
B
HOH
326
5
HOH
HOH
1236
B
HOH
327
5
HOH
HOH
1237
B
HOH
330
5
HOH
HOH
1238
B
HOH
331
5
HOH
HOH
1239
B
HOH
332
5
HOH
HOH
1240
B
HOH
333
5
HOH
HOH
1241
B
HOH
335
5
HOH
HOH
1242
B
HOH
336
5
HOH
HOH
1243
B
HOH
340
5
HOH
HOH
1244
B
HOH
343
5
HOH
HOH
1245
B
HOH
346
5
HOH
HOH
1246
B
HOH
350
5
HOH
HOH
1247
B
HOH
351
5
HOH
HOH
1248
B
HOH
353
5
HOH
HOH
1249
B
HOH
357
5
HOH
HOH
1250
B
HOH
363
5
HOH
HOH
1251
B
HOH
366
5
HOH
HOH
1252
B
HOH
369
5
HOH
HOH
1253
B
HOH
370
5
HOH
HOH
1254
B
HOH
372
5
HOH
HOH
1255
B
HOH
373
5
HOH
HOH
1256
B
HOH
375
5
HOH
HOH
1257
B
HOH
377
5
HOH
HOH
1258
B
HOH
379
5
HOH
HOH
1259
B
HOH
386
5
HOH
HOH
1260
B
HOH
389
5
HOH
HOH
1261
B
HOH
393
5
HOH
HOH
1262
B
HOH
396
5
HOH
HOH
1263
B
HOH
397
5
HOH
HOH
1264
B
HOH
398
5
HOH
HOH
1265
B
HOH
399
5
HOH
HOH
1266
B
HOH
400
5
HOH
HOH
1267
B
HOH
401
5
HOH
HOH
1268
B
HOH
402
5
HOH
HOH
1269
B
HOH
407
5
HOH
HOH
1270
B
HOH
410
5
HOH
HOH
1271
B
HOH
415
5
HOH
HOH
1272
B
HOH
422
5
HOH
HOH
1273
B
HOH
423
5
HOH
HOH
1274
B
HOH
424
5
HOH
HOH
1275
B
HOH
426
5
HOH
HOH
1276
B
HOH
427
5
HOH
HOH
1277
B
HOH
431
5
HOH
HOH
1278
B
HOH
432
5
HOH
HOH
1279
B
HOH
433
5
HOH
HOH
1280
B
HOH
434
5
HOH
HOH
1281
B
HOH
17
5
HOH
HOH
101
C
HOH
20
5
HOH
HOH
102
C
HOH
33
5
HOH
HOH
103
C
HOH
36
5
HOH
HOH
104
C
HOH
94
5
HOH
HOH
105
C
HOH
113
5
HOH
HOH
106
C
HOH
133
5
HOH
HOH
107
C
HOH
136
5
HOH
HOH
108
C
HOH
140
5
HOH
HOH
109
C
HOH
146
5
HOH
HOH
110
C
HOH
165
5
HOH
HOH
111
C
HOH
166
5
HOH
HOH
112
C
HOH
171
5
HOH
HOH
113
C
HOH
194
5
HOH
HOH
114
C
HOH
206
5
HOH
HOH
115
C
HOH
207
5
HOH
HOH
116
C
HOH
295
5
HOH
HOH
117
C
HOH
310
5
HOH
HOH
118
C
HOH
311
5
HOH
HOH
119
C
HOH
312
5
HOH
HOH
120
C
HOH
338
5
HOH
HOH
121
C
HOH
374
5
HOH
HOH
122
C
HOH
381
5
HOH
HOH
123
C
HOH
385
5
HOH
HOH
124
C
HOH
390
5
HOH
HOH
125
C
HOH
392
5
HOH
HOH
126
C
HOH
413
5
HOH
HOH
127
C
HOH
435
5
HOH
HOH
128
C
HOH
436
5
HOH
HOH
129
C
HOH
439
5
HOH
HOH
130
C
HOH
22
5
HOH
HOH
101
D
HOH
34
5
HOH
HOH
102
D
HOH
53
5
HOH
HOH
103
D
HOH
61
5
HOH
HOH
104
D
HOH
105
5
HOH
HOH
105
D
HOH
124
5
HOH
HOH
106
D
HOH
152
5
HOH
HOH
107
D
HOH
170
5
HOH
HOH
108
D
HOH
173
5
HOH
HOH
109
D
HOH
188
5
HOH
HOH
110
D
HOH
213
5
HOH
HOH
111
D
HOH
221
5
HOH
HOH
112
D
HOH
239
5
HOH
HOH
113
D
HOH
258
5
HOH
HOH
114
D
HOH
259
5
HOH
HOH
115
D
HOH
272
5
HOH
HOH
116
D
HOH
307
5
HOH
HOH
117
D
HOH
339
5
HOH
HOH
118
D
HOH
344
5
HOH
HOH
119
D
HOH
355
5
HOH
HOH
120
D
HOH
360
5
HOH
HOH
121
D
HOH
362
5
HOH
HOH
122
D
HOH
364
5
HOH
HOH
123
D
HOH
376
5
HOH
HOH
124
D
HOH
416
5
HOH
HOH
125
D
HOH
428
5
HOH
HOH
126
D
HOH
438
5
HOH
HOH
127
D
SER
0
n
1
SER
0
A
MET
1
n
2
MET
1
A
LYS
2
n
3
LYS
2
A
LEU
3
n
4
LEU
3
A
THR
4
n
5
THR
4
A
ILE
5
n
6
ILE
5
A
PRO
6
n
7
PRO
6
A
GLU
7
n
8
GLU
7
A
LEU
8
n
9
LEU
8
A
SER
9
n
10
SER
9
A
LEU
10
n
11
LEU
10
A
VAL
11
n
12
VAL
11
A
VAL
12
n
13
VAL
12
A
LEU
13
n
14
LEU
13
A
ILE
14
n
15
ILE
14
A
GLY
15
n
16
GLY
15
A
SER
16
n
17
SER
16
A
SER
17
n
18
SER
17
A
GLY
18
n
19
GLY
18
A
SER
19
n
20
SER
19
A
GLY
20
n
21
GLY
20
A
LYS
21
n
22
LYS
21
A
SER
22
n
23
SER
22
A
THR
23
n
24
THR
23
A
PHE
24
n
25
PHE
24
A
ALA
25
n
26
ALA
25
A
LYS
26
n
27
LYS
26
A
LYS
27
n
28
LYS
27
A
HIS
28
n
29
HIS
28
A
PHE
29
n
30
PHE
29
A
LYS
30
n
31
LYS
30
A
PRO
31
n
32
PRO
31
A
THR
32
n
33
THR
32
A
GLU
33
n
34
GLU
33
A
VAL
34
n
35
VAL
34
A
ILE
35
n
36
ILE
35
A
SER
36
n
37
SER
36
A
SER
37
n
38
SER
37
A
ASN
38
n
39
ASN
38
A
PHE
39
n
40
PHE
39
A
CYS
40
n
41
CYS
40
A
ARG
41
n
42
ARG
41
A
GLY
42
n
43
GLY
42
A
LEU
43
n
44
LEU
43
A
VAL
44
n
45
VAL
44
A
SER
45
n
46
SER
45
A
ASP
46
n
47
ASP
46
A
ASP
47
n
48
ASP
47
A
GLU
48
n
49
GLU
48
A
ASN
49
n
50
ASN
49
A
ASP
50
n
51
ASP
50
A
GLN
51
n
52
GLN
51
A
THR
52
n
53
THR
52
A
VAL
53
n
54
VAL
53
A
THR
54
n
55
THR
54
A
GLY
55
n
56
GLY
55
A
ALA
56
n
57
ALA
56
A
ALA
57
n
58
ALA
57
A
PHE
58
n
59
PHE
58
A
ASP
59
n
60
ASP
59
A
VAL
60
n
61
VAL
60
A
LEU
61
n
62
LEU
61
A
HIS
62
n
63
HIS
62
A
TYR
63
n
64
TYR
63
A
ILE
64
n
65
ILE
64
A
VAL
65
n
66
VAL
65
A
SER
66
n
67
SER
66
A
LYS
67
n
68
LYS
67
A
ARG
68
n
69
ARG
68
A
LEU
69
n
70
LEU
69
A
GLN
70
n
71
GLN
70
A
LEU
71
n
72
LEU
71
A
GLY
72
n
73
GLY
72
A
LYS
73
n
74
LYS
73
A
LEU
74
n
75
LEU
74
A
THR
75
n
76
THR
75
A
VAL
76
n
77
VAL
76
A
VAL
77
n
78
VAL
77
A
ASP
78
n
79
ASP
78
A
ALA
79
n
80
ALA
79
A
THR
80
n
81
THR
80
A
ASN
81
n
82
ASN
81
A
VAL
82
n
83
VAL
82
A
GLN
83
n
84
GLN
83
A
GLU
84
n
85
GLU
84
A
SER
85
n
86
SER
85
A
ALA
86
n
87
ALA
86
A
ARG
87
n
88
ARG
87
A
LYS
88
n
89
LYS
88
A
PRO
89
n
90
PRO
89
A
LEU
90
n
91
LEU
90
A
ILE
91
n
92
ILE
91
A
GLU
92
n
93
GLU
92
A
ILE
93
n
94
ILE
93
A
ALA
94
n
95
ALA
94
A
LYS
95
n
96
LYS
95
A
ASP
96
n
97
ASP
96
A
TYR
97
n
98
TYR
97
A
HIS
98
n
99
HIS
98
A
CYS
99
n
100
CYS
99
A
PHE
100
n
101
PHE
100
A
PRO
101
n
102
PRO
101
A
VAL
102
n
103
VAL
102
A
ALA
103
n
104
ALA
103
A
VAL
104
n
105
VAL
104
A
VAL
105
n
106
VAL
105
A
PHE
106
n
107
PHE
106
A
ASN
107
n
108
ASN
107
A
LEU
108
n
109
LEU
108
A
PRO
109
n
110
PRO
109
A
GLU
110
n
111
GLU
110
A
LYS
111
n
112
LYS
111
A
VAL
112
n
113
VAL
112
A
CYS
113
n
114
CYS
113
A
GLN
114
n
115
GLN
114
A
GLU
115
n
116
GLU
115
A
ARG
116
n
117
ARG
116
A
ASN
117
n
118
ASN
117
A
LYS
118
n
119
LYS
118
A
ASN
119
n
120
ASN
119
A
ARG
120
n
121
ARG
120
A
THR
121
n
122
THR
121
A
ASP
122
n
123
ASP
122
A
ARG
123
n
124
ARG
123
A
GLN
124
n
125
GLN
124
A
VAL
125
n
126
VAL
125
A
GLU
126
n
127
GLU
126
A
GLU
127
n
128
GLU
127
A
TYR
128
n
129
TYR
128
A
VAL
129
n
130
VAL
129
A
ILE
130
n
131
ILE
130
A
ARG
131
n
132
ARG
131
A
LYS
132
n
133
LYS
132
A
HIS
133
n
134
HIS
133
A
THR
134
n
135
THR
134
A
GLN
135
n
136
GLN
135
A
GLN
136
n
137
GLN
136
A
MET
137
n
138
MET
137
A
LYS
138
n
139
LYS
138
A
LYS
139
n
140
LYS
139
A
SER
140
n
141
SER
140
A
ILE
141
n
142
ILE
141
A
LYS
142
n
143
LYS
142
A
GLY
143
n
144
GLY
143
A
LEU
144
n
145
LEU
144
A
GLN
145
n
146
GLN
145
A
ARG
146
n
147
ARG
146
A
GLU
147
n
148
GLU
147
A
GLY
148
n
149
GLY
148
A
PHE
149
n
150
PHE
149
A
ARG
150
n
151
ARG
150
A
TYR
151
n
152
TYR
151
A
VAL
152
n
153
VAL
152
A
TYR
153
n
154
TYR
153
A
ILE
154
n
155
ILE
154
A
LEU
155
n
156
LEU
155
A
ASN
156
n
157
ASN
156
A
SER
157
n
158
SER
157
A
PRO
158
n
159
PRO
158
A
GLU
159
n
160
GLU
159
A
GLU
160
n
161
GLU
160
A
VAL
161
n
162
VAL
161
A
GLU
162
n
163
GLU
162
A
GLU
163
n
164
GLU
163
A
VAL
164
n
165
VAL
164
A
VAL
165
n
166
VAL
165
A
PHE
166
n
167
PHE
166
A
GLU
167
n
168
GLU
167
A
ARG
168
n
169
ARG
168
A
GLN
169
n
170
GLN
169
A
PRO
170
n
171
PRO
170
A
SER
0
n
1
SER
0
B
MET
1
n
2
MET
1
B
LYS
2
n
3
LYS
2
B
LEU
3
n
4
LEU
3
B
THR
4
n
5
THR
4
B
ILE
5
n
6
ILE
5
B
PRO
6
n
7
PRO
6
B
GLU
7
n
8
GLU
7
B
LEU
8
n
9
LEU
8
B
SER
9
n
10
SER
9
B
LEU
10
n
11
LEU
10
B
VAL
11
n
12
VAL
11
B
VAL
12
n
13
VAL
12
B
LEU
13
n
14
LEU
13
B
ILE
14
n
15
ILE
14
B
GLY
15
n
16
GLY
15
B
SER
16
n
17
SER
16
B
SER
17
n
18
SER
17
B
GLY
18
n
19
GLY
18
B
SER
19
n
20
SER
19
B
GLY
20
n
21
GLY
20
B
LYS
21
n
22
LYS
21
B
SER
22
n
23
SER
22
B
THR
23
n
24
THR
23
B
PHE
24
n
25
PHE
24
B
ALA
25
n
26
ALA
25
B
LYS
26
n
27
LYS
26
B
LYS
27
n
28
LYS
27
B
HIS
28
n
29
HIS
28
B
PHE
29
n
30
PHE
29
B
LYS
30
n
31
LYS
30
B
PRO
31
n
32
PRO
31
B
THR
32
n
33
THR
32
B
GLU
33
n
34
GLU
33
B
VAL
34
n
35
VAL
34
B
ILE
35
n
36
ILE
35
B
SER
36
n
37
SER
36
B
SER
37
n
38
SER
37
B
ASN
38
n
39
ASN
38
B
PHE
39
n
40
PHE
39
B
CYS
40
n
41
CYS
40
B
ARG
41
n
42
ARG
41
B
GLY
42
n
43
GLY
42
B
LEU
43
n
44
LEU
43
B
VAL
44
n
45
VAL
44
B
SER
45
n
46
SER
45
B
ASP
46
n
47
ASP
46
B
ASP
47
n
48
ASP
47
B
GLU
48
n
49
GLU
48
B
ASN
49
n
50
ASN
49
B
ASP
50
n
51
ASP
50
B
GLN
51
n
52
GLN
51
B
THR
52
n
53
THR
52
B
VAL
53
n
54
VAL
53
B
THR
54
n
55
THR
54
B
GLY
55
n
56
GLY
55
B
ALA
56
n
57
ALA
56
B
ALA
57
n
58
ALA
57
B
PHE
58
n
59
PHE
58
B
ASP
59
n
60
ASP
59
B
VAL
60
n
61
VAL
60
B
LEU
61
n
62
LEU
61
B
HIS
62
n
63
HIS
62
B
TYR
63
n
64
TYR
63
B
ILE
64
n
65
ILE
64
B
VAL
65
n
66
VAL
65
B
SER
66
n
67
SER
66
B
LYS
67
n
68
LYS
67
B
ARG
68
n
69
ARG
68
B
LEU
69
n
70
LEU
69
B
GLN
70
n
71
GLN
70
B
LEU
71
n
72
LEU
71
B
GLY
72
n
73
GLY
72
B
LYS
73
n
74
LYS
73
B
LEU
74
n
75
LEU
74
B
THR
75
n
76
THR
75
B
VAL
76
n
77
VAL
76
B
VAL
77
n
78
VAL
77
B
ASP
78
n
79
ASP
78
B
ALA
79
n
80
ALA
79
B
THR
80
n
81
THR
80
B
ASN
81
n
82
ASN
81
B
VAL
82
n
83
VAL
82
B
GLN
83
n
84
GLN
83
B
GLU
84
n
85
GLU
84
B
SER
85
n
86
SER
85
B
ALA
86
n
87
ALA
86
B
ARG
87
n
88
ARG
87
B
LYS
88
n
89
LYS
88
B
PRO
89
n
90
PRO
89
B
LEU
90
n
91
LEU
90
B
ILE
91
n
92
ILE
91
B
GLU
92
n
93
GLU
92
B
ILE
93
n
94
ILE
93
B
ALA
94
n
95
ALA
94
B
LYS
95
n
96
LYS
95
B
ASP
96
n
97
ASP
96
B
TYR
97
n
98
TYR
97
B
HIS
98
n
99
HIS
98
B
CYS
99
n
100
CYS
99
B
PHE
100
n
101
PHE
100
B
PRO
101
n
102
PRO
101
B
VAL
102
n
103
VAL
102
B
ALA
103
n
104
ALA
103
B
VAL
104
n
105
VAL
104
B
VAL
105
n
106
VAL
105
B
PHE
106
n
107
PHE
106
B
ASN
107
n
108
ASN
107
B
LEU
108
n
109
LEU
108
B
PRO
109
n
110
PRO
109
B
GLU
110
n
111
GLU
110
B
LYS
111
n
112
LYS
111
B
VAL
112
n
113
VAL
112
B
CYS
113
n
114
CYS
113
B
GLN
114
n
115
GLN
114
B
GLU
115
n
116
GLU
115
B
ARG
116
n
117
ARG
116
B
ASN
117
n
118
ASN
117
B
LYS
118
n
119
LYS
118
B
ASN
119
n
120
ASN
119
B
ARG
120
n
121
ARG
120
B
THR
121
n
122
THR
121
B
ASP
122
n
123
ASP
122
B
ARG
123
n
124
ARG
123
B
GLN
124
n
125
GLN
124
B
VAL
125
n
126
VAL
125
B
GLU
126
n
127
GLU
126
B
GLU
127
n
128
GLU
127
B
TYR
128
n
129
TYR
128
B
VAL
129
n
130
VAL
129
B
ILE
130
n
131
ILE
130
B
ARG
131
n
132
ARG
131
B
LYS
132
n
133
LYS
132
B
HIS
133
n
134
HIS
133
B
THR
134
n
135
THR
134
B
GLN
135
n
136
GLN
135
B
GLN
136
n
137
GLN
136
B
MET
137
n
138
MET
137
B
LYS
138
n
139
LYS
138
B
LYS
139
n
140
LYS
139
B
SER
140
n
141
SER
140
B
ILE
141
n
142
ILE
141
B
LYS
142
n
143
LYS
142
B
GLY
143
n
144
GLY
143
B
LEU
144
n
145
LEU
144
B
GLN
145
n
146
GLN
145
B
ARG
146
n
147
ARG
146
B
GLU
147
n
148
GLU
147
B
GLY
148
n
149
GLY
148
B
PHE
149
n
150
PHE
149
B
ARG
150
n
151
ARG
150
B
TYR
151
n
152
TYR
151
B
VAL
152
n
153
VAL
152
B
TYR
153
n
154
TYR
153
B
ILE
154
n
155
ILE
154
B
LEU
155
n
156
LEU
155
B
ASN
156
n
157
ASN
156
B
SER
157
n
158
SER
157
B
PRO
158
n
159
PRO
158
B
GLU
159
n
160
GLU
159
B
GLU
160
n
161
GLU
160
B
VAL
161
n
162
VAL
161
B
GLU
162
n
163
GLU
162
B
GLU
163
n
164
GLU
163
B
VAL
164
n
165
VAL
164
B
VAL
165
n
166
VAL
165
B
PHE
166
n
167
PHE
166
B
GLU
167
n
168
GLU
167
B
ARG
168
n
169
ARG
168
B
GLN
169
n
170
GLN
169
B
PRO
170
n
171
PRO
170
B
DC
1
n
1
DC
1
C
DC
2
n
2
DC
2
C
DT
3
n
3
DT
3
C
DG
4
n
4
DG
4
C
DT
5
n
5
DT
5
C
DC
1
n
1
DC
1
D
DC
2
n
2
DC
2
D
DT
3
n
3
DT
3
D
DG
4
n
4
DG
4
D
DT
5
n
5
DT
5
D
author_defined_assembly
4
tetrameric
software_defined_assembly
PISA
4
tetrameric
6280
-62
16540
A
SER
22
A
OG
SER
23
1_555
A
MG
1002
F
MG
MG
1_555
A
GDP
1001
E
O1B
GDP
1_555
93.1
A
SER
22
A
OG
SER
23
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1101
I
O
HOH
1_555
90.0
A
GDP
1001
E
O1B
GDP
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1101
I
O
HOH
1_555
88.8
A
SER
22
A
OG
SER
23
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1102
I
O
HOH
1_555
80.4
A
GDP
1001
E
O1B
GDP
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1102
I
O
HOH
1_555
173.0
A
HOH
1101
I
O
HOH
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1102
I
O
HOH
1_555
88.6
A
SER
22
A
OG
SER
23
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1103
I
O
HOH
1_555
85.8
A
GDP
1001
E
O1B
GDP
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1103
I
O
HOH
1_555
93.1
A
HOH
1101
I
O
HOH
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1103
I
O
HOH
1_555
175.5
A
HOH
1102
I
O
HOH
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1103
I
O
HOH
1_555
89.0
A
SER
22
A
OG
SER
23
1_555
A
MG
1002
F
MG
MG
1_555
C
DC
1
C
OP3
DC
1
1_555
167.5
A
GDP
1001
E
O1B
GDP
1_555
A
MG
1002
F
MG
MG
1_555
C
DC
1
C
OP3
DC
1
1_555
97.2
A
HOH
1101
I
O
HOH
1_555
A
MG
1002
F
MG
MG
1_555
C
DC
1
C
OP3
DC
1
1_555
97.3
A
HOH
1102
I
O
HOH
1_555
A
MG
1002
F
MG
MG
1_555
C
DC
1
C
OP3
DC
1
1_555
89.5
A
HOH
1103
I
O
HOH
1_555
A
MG
1002
F
MG
MG
1_555
C
DC
1
C
OP3
DC
1
1_555
86.6
B
SER
22
B
OG
SER
23
1_555
B
MG
1002
H
MG
MG
1_555
B
GDP
1001
G
O1B
GDP
1_555
91.2
B
SER
22
B
OG
SER
23
1_555
B
MG
1002
H
MG
MG
1_555
B
HOH
1101
J
O
HOH
1_555
89.8
B
GDP
1001
G
O1B
GDP
1_555
B
MG
1002
H
MG
MG
1_555
B
HOH
1101
J
O
HOH
1_555
88.2
B
SER
22
B
OG
SER
23
1_555
B
MG
1002
H
MG
MG
1_555
B
HOH
1102
J
O
HOH
1_555
83.8
B
GDP
1001
G
O1B
GDP
1_555
B
MG
1002
H
MG
MG
1_555
B
HOH
1102
J
O
HOH
1_555
174.4
B
HOH
1101
J
O
HOH
1_555
B
MG
1002
H
MG
MG
1_555
B
HOH
1102
J
O
HOH
1_555
89.2
B
SER
22
B
OG
SER
23
1_555
B
MG
1002
H
MG
MG
1_555
B
HOH
1103
J
O
HOH
1_555
84.8
B
GDP
1001
G
O1B
GDP
1_555
B
MG
1002
H
MG
MG
1_555
B
HOH
1103
J
O
HOH
1_555
94.2
B
HOH
1101
J
O
HOH
1_555
B
MG
1002
H
MG
MG
1_555
B
HOH
1103
J
O
HOH
1_555
174.2
B
HOH
1102
J
O
HOH
1_555
B
MG
1002
H
MG
MG
1_555
B
HOH
1103
J
O
HOH
1_555
88.0
B
SER
22
B
OG
SER
23
1_555
B
MG
1002
H
MG
MG
1_555
D
DC
1
D
OP1
DC
1
1_555
172.1
B
GDP
1001
G
O1B
GDP
1_555
B
MG
1002
H
MG
MG
1_555
D
DC
1
D
OP1
DC
1
1_555
96.3
B
HOH
1101
J
O
HOH
1_555
B
MG
1002
H
MG
MG
1_555
D
DC
1
D
OP1
DC
1
1_555
92.8
B
HOH
1102
J
O
HOH
1_555
B
MG
1002
H
MG
MG
1_555
D
DC
1
D
OP1
DC
1
1_555
88.7
B
HOH
1103
J
O
HOH
1_555
B
MG
1002
H
MG
MG
1_555
D
DC
1
D
OP1
DC
1
1_555
92.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_455
-x-1/2,-y,z+1/2
crystal symmetry operation
-27.2200000000
0.0000000000
59.5200000000
A
N
LEU
3
A
N
LEU
4
A
O
VAL
165
A
O
VAL
166
A
N
ILE
35
A
N
ILE
36
A
O
VAL
76
A
O
VAL
77
A
O
VAL
77
A
O
VAL
78
A
N
VAL
11
A
N
VAL
12
A
N
VAL
12
A
N
VAL
13
A
O
VAL
102
A
O
VAL
103
A
N
VAL
105
A
N
VAL
106
A
O
TYR
153
A
O
TYR
154
B
N
LEU
3
B
N
LEU
4
B
O
VAL
165
B
O
VAL
166
B
N
ILE
35
B
N
ILE
36
B
O
VAL
76
B
O
VAL
77
B
O
VAL
77
B
O
VAL
78
B
N
VAL
11
B
N
VAL
12
B
N
VAL
12
B
N
VAL
13
B
O
VAL
102
B
O
VAL
103
B
N
VAL
105
B
N
VAL
106
B
O
TYR
153
B
O
TYR
154
1
B
B
O
O
HOH
HOH
1198
1228
2.16
1
A
A
O
O
HOH
HOH
1241
1266
2.17
1
A
A
O
O
HOH
HOH
1196
1251
2.18
1
A
A
O
O
HOH
HOH
1221
1231
2.19
1
2.10
0.30
108.30
110.40
D
D
D
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
C
C
P
OP3
DC
DC
1
1
-0.133
0.012
1.607
1.474
N
1
D
D
P
OP3
DC
DC
1
1
-0.120
0.012
1.607
1.487
N
1
A
ASP
46
76.40
-6.53
1
A
ASP
122
-112.97
-145.79
1
B
ASP
46
77.08
-8.48
0.2056
0.1644
0.1675
1.800
40.995
3439
44862
43651
7.88
97.33
0.18
8% of data chosen at random
1
1.34
molecular refinement
22.19
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
1.800
40.995
440
3438
58
202
2738
0.006
3089
1.084
4226
15.352
1206
0.071
481
0.004
503
0.2708
0.2228
1.8247
123
1642
98.00
0.2732
0.2063
1.8507
144
1562
98.00
0.2308
0.1925
1.8784
146
1565
97.00
0.2035
0.1795
1.9077
148
1539
97.00
0.2408
0.1759
1.9390
127
1620
98.00
0.2471
0.1712
1.9724
113
1616
98.00
0.2242
0.1746
2.0083
141
1587
98.00
0.2305
0.1687
2.0469
138
1562
96.00
0.1952
0.1586
2.0887
140
1619
98.00
0.2156
0.1582
2.1341
142
1564
98.00
0.2082
0.1563
2.1838
135
1601
97.00
0.2155
0.1632
2.2384
136
1588
98.00
0.2374
0.1600
2.2989
140
1578
96.00
0.2292
0.1625
2.3665
139
1621
98.00
0.2350
0.1653
2.4429
119
1607
98.00
0.2327
0.1668
2.5302
151
1600
97.00
0.2114
0.1755
2.6315
129
1633
99.00
0.2185
0.1628
2.7512
147
1592
98.00
0.1884
0.1668
2.8962
149
1626
98.00
0.1901
0.1651
3.0776
138
1618
98.00
0.1853
0.1679
3.3152
132
1663
99.00
0.1945
0.1611
3.6486
139
1676
99.00
0.1792
0.1466
4.1761
139
1637
98.00
0.1736
0.1432
5.2597
137
1637
96.00
0.2136
0.1788
41.0060
147
1659
92.00
1.8
46.2
4MDE
44706
43723
-999
-3.0
1
97.8
1.8
1.9
1
97.6
data collection
CBASS
model building
PHENIX
refinement
PHENIX
(phenix.refine: 1.8.2_1309)
data reduction
MOSFLM
data scaling
SCALA
phasing
PHENIX
Structure of bacterial polynucleotide kinase product complex bound to GDP and DNA
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
A
GLY
20
A
GLY
21
HELX_P
A
PHE
29
A
PHE
30
1
1
10
A
LYS
30
A
LYS
31
HELX_P
A
THR
32
A
THR
33
5
2
3
A
SER
37
A
SER
38
HELX_P
A
ASP
46
A
ASP
47
1
3
10
A
ASP
50
A
ASP
51
HELX_P
A
THR
52
A
THR
53
5
4
3
A
VAL
53
A
VAL
54
HELX_P
A
LEU
71
A
LEU
72
1
5
19
A
GLN
83
A
GLN
84
HELX_P
A
TYR
97
A
TYR
98
1
6
15
A
PRO
109
A
PRO
110
HELX_P
A
ASN
119
A
ASN
120
1
7
11
A
GLU
126
A
GLU
127
HELX_P
A
ILE
141
A
ILE
142
1
8
16
A
GLY
143
A
GLY
144
HELX_P
A
GLY
148
A
GLY
149
1
9
6
A
SER
157
A
SER
158
HELX_P
A
GLU
163
A
GLU
164
1
10
7
B
GLY
20
B
GLY
21
HELX_P
B
PHE
29
B
PHE
30
1
11
10
B
LYS
30
B
LYS
31
HELX_P
B
THR
32
B
THR
33
5
12
3
B
SER
37
B
SER
38
HELX_P
B
ASP
46
B
ASP
47
1
13
10
B
ASP
50
B
ASP
51
HELX_P
B
THR
52
B
THR
53
5
14
3
B
VAL
53
B
VAL
54
HELX_P
B
LEU
71
B
LEU
72
1
15
19
B
GLN
83
B
GLN
84
HELX_P
B
TYR
97
B
TYR
98
1
16
15
B
PRO
109
B
PRO
110
HELX_P
B
ARG
120
B
ARG
121
1
17
12
B
GLU
126
B
GLU
127
HELX_P
B
ILE
141
B
ILE
142
1
18
16
B
GLY
143
B
GLY
144
HELX_P
B
GLY
148
B
GLY
149
1
19
6
B
SER
157
B
SER
158
HELX_P
B
GLU
163
B
GLU
164
1
20
7
metalc
2.126
A
SER
22
A
OG
SER
23
1_555
A
MG
1002
F
MG
MG
1_555
metalc
2.008
A
GDP
1001
E
O1B
GDP
1_555
A
MG
1002
F
MG
MG
1_555
metalc
2.173
A
MG
1002
F
MG
MG
1_555
A
HOH
1101
I
O
HOH
1_555
metalc
2.207
A
MG
1002
F
MG
MG
1_555
A
HOH
1102
I
O
HOH
1_555
metalc
2.113
A
MG
1002
F
MG
MG
1_555
A
HOH
1103
I
O
HOH
1_555
metalc
2.095
A
MG
1002
F
MG
MG
1_555
C
DC
1
C
OP3
DC
1
1_555
metalc
2.091
B
SER
22
B
OG
SER
23
1_555
B
MG
1002
H
MG
MG
1_555
metalc
2.080
B
GDP
1001
G
O1B
GDP
1_555
B
MG
1002
H
MG
MG
1_555
metalc
2.091
B
MG
1002
H
MG
MG
1_555
B
HOH
1101
J
O
HOH
1_555
metalc
2.169
B
MG
1002
H
MG
MG
1_555
B
HOH
1102
J
O
HOH
1_555
metalc
2.093
B
MG
1002
H
MG
MG
1_555
B
HOH
1103
J
O
HOH
1_555
metalc
2.059
B
MG
1002
H
MG
MG
1_555
D
DC
1
D
OP1
DC
1
1_555
TRANSFERASE/DNA
RNA repair, P-loop phosphotransferase, transferase, HYDROLASE-DNA complex, TRANSFERASE-DNA complex
A3DJ38_CLOTH
UNP
1
1
A3DJ38
MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLVSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDAT
NVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQLKKSIKGLQREGFRYVYILNSPEE
VEEVVFERQP
4MDE
PDB
2
4MDE
CCTGT
1
170
4MDE
1
170
A3DJ38
A
1
2
171
1
170
4MDE
1
170
A3DJ38
B
1
2
171
1
5
4MDE
1
5
4MDE
C
2
1
5
1
5
4MDE
1
5
4MDE
D
2
1
5
1
expression tag
SER
0
4MDE
A
A3DJ38
UNP
1
1
ASP
engineered mutation
ASN
38
4MDE
A
A3DJ38
UNP
38
39
1
LEU
engineered mutation
MET
137
4MDE
A
A3DJ38
UNP
137
138
2
expression tag
SER
0
4MDE
B
A3DJ38
UNP
1
2
ASP
engineered mutation
ASN
38
4MDE
B
A3DJ38
UNP
38
39
2
LEU
engineered mutation
MET
137
4MDE
B
A3DJ38
UNP
137
138
2
5
2
5
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
MET
1
A
MET
2
A
PRO
6
A
PRO
7
A
VAL
164
A
VAL
165
A
GLN
169
A
GLN
170
A
VAL
34
A
VAL
35
A
SER
36
A
SER
37
A
THR
75
A
THR
76
A
ASP
78
A
ASP
79
A
SER
9
A
SER
10
A
ILE
14
A
ILE
15
A
PHE
100
A
PHE
101
A
PHE
106
A
PHE
107
A
TYR
151
A
TYR
152
A
LEU
155
A
LEU
156
B
MET
1
B
MET
2
B
PRO
6
B
PRO
7
B
VAL
164
B
VAL
165
B
GLN
169
B
GLN
170
B
VAL
34
B
VAL
35
B
SER
36
B
SER
37
B
THR
75
B
THR
76
B
ASP
78
B
ASP
79
B
SER
9
B
SER
10
B
ILE
14
B
ILE
15
B
PHE
100
B
PHE
101
B
PHE
106
B
PHE
107
B
TYR
151
B
TYR
152
B
LEU
155
B
LEU
156
BINDING SITE FOR RESIDUE GDP A 1001
A
GDP
1001
Software
20
BINDING SITE FOR RESIDUE MG A 1002
A
MG
1002
Software
7
BINDING SITE FOR RESIDUE GDP B 1001
B
GDP
1001
Software
18
BINDING SITE FOR RESIDUE MG B 1002
B
MG
1002
Software
7
A
SER
16
A
SER
17
20
1_555
A
GLY
18
A
GLY
19
20
1_555
A
SER
19
A
SER
20
20
1_555
A
GLY
20
A
GLY
21
20
1_555
A
LYS
21
A
LYS
22
20
1_555
A
SER
22
A
SER
23
20
1_555
A
THR
23
A
THR
24
20
1_555
A
ARG
116
A
ARG
117
20
1_555
A
ARG
120
A
ARG
121
20
1_555
A
ARG
123
A
ARG
124
20
1_555
A
MG
1002
F
MG
20
1_555
A
HOH
1101
I
HOH
20
1_555
A
HOH
1103
I
HOH
20
1_555
A
HOH
1184
I
HOH
20
1_555
A
HOH
1191
I
HOH
20
1_555
A
HOH
1214
I
HOH
20
1_555
A
HOH
1226
I
HOH
20
1_555
A
HOH
1259
I
HOH
20
1_555
B
LYS
118
B
LYS
119
20
3_444
C
DC
1
C
DC
1
20
1_555
A
SER
22
A
SER
23
7
1_555
A
ARG
123
A
ARG
124
7
1_555
A
GDP
1001
E
GDP
7
1_555
A
HOH
1101
I
HOH
7
1_555
A
HOH
1102
I
HOH
7
1_555
A
HOH
1103
I
HOH
7
1_555
C
DC
1
C
DC
1
7
1_555
B
SER
16
B
SER
17
18
1_555
B
GLY
18
B
GLY
19
18
1_555
B
SER
19
B
SER
20
18
1_555
B
GLY
20
B
GLY
21
18
1_555
B
LYS
21
B
LYS
22
18
1_555
B
SER
22
B
SER
23
18
1_555
B
THR
23
B
THR
24
18
1_555
B
ARG
116
B
ARG
117
18
1_555
B
ARG
120
B
ARG
121
18
1_555
B
MG
1002
H
MG
18
1_555
B
HOH
1101
J
HOH
18
1_555
B
HOH
1103
J
HOH
18
1_555
B
HOH
1149
J
HOH
18
1_555
B
HOH
1189
J
HOH
18
1_555
B
HOH
1200
J
HOH
18
1_555
B
HOH
1222
J
HOH
18
1_555
B
HOH
1248
J
HOH
18
1_555
D
DC
1
D
DC
1
18
1_555
B
SER
22
B
SER
23
7
1_555
B
ARG
123
B
ARG
124
7
1_555
B
GDP
1001
G
GDP
7
1_555
B
HOH
1101
J
HOH
7
1_555
B
HOH
1102
J
HOH
7
1_555
B
HOH
1103
J
HOH
7
1_555
D
DC
1
D
DC
1
7
1_555
19
P 21 21 21