0.018859
0.000000
0.000000
0.000000
0.013745
0.000000
0.000000
0.000000
0.008371
0.00000
0.00000
0.00000
Shuman, S.
Das, U.
Wang, L.K.
Smith, P.
Jacewicz, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
53.025
72.755
119.460
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H8 O7
192.124
CITRIC ACID
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C10 H16 N5 O14 P3
523.180
n
GUANOSINE-5'-TRIPHOSPHATE
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
O
N
77
N
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
O
N
84
N
C
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
R
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
S
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
O
N
110
N
P
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
C
N
115
R
C
N
116
N
O
N
117
S
C
N
118
N
O
N
119
N
C
N
120
R
C
N
121
N
N
N
122
N
C
N
123
N
O
N
124
N
N
N
125
N
C
N
126
N
N
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
O
N
144
N
P
N
145
N
O
N
146
N
O
N
147
N
O
N
148
N
C
N
149
R
C
N
150
N
O
N
151
S
C
N
152
N
O
N
153
N
C
N
154
R
C
Y
155
N
N
Y
156
N
C
Y
157
N
N
Y
158
N
C
N
159
N
C
N
160
N
O
N
161
N
N
N
162
N
C
N
163
N
N
N
164
N
N
Y
165
N
C
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
O
N
181
N
P
N
182
N
O
N
183
N
O
N
184
N
O
N
185
N
C
N
186
R
C
N
187
N
O
N
188
S
C
N
189
N
O
N
190
N
C
N
191
R
C
N
192
N
N
N
193
N
C
N
194
N
O
N
195
N
N
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
O
N
224
N
N
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
O
N
244
N
O
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
N
N
256
N
C
N
257
N
C
N
258
N
O
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
P
N
266
N
O
N
267
N
O
N
268
N
O
N
269
N
O
N
270
N
P
N
271
N
O
N
272
N
O
N
273
N
O
N
274
N
P
N
275
N
O
N
276
N
O
N
277
N
O
N
278
N
C
N
279
R
C
N
280
N
O
N
281
S
C
N
282
N
O
N
283
R
C
N
284
N
O
N
285
R
C
Y
286
N
N
Y
287
N
C
Y
288
N
N
Y
289
N
C
N
290
N
C
N
291
N
O
N
292
N
N
N
293
N
C
N
294
N
N
N
295
N
N
Y
296
N
C
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
Y
318
N
C
Y
319
N
N
Y
320
N
C
Y
321
N
C
Y
322
N
N
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
N
N
338
S
C
N
339
N
C
N
340
N
O
N
341
S
C
N
342
N
C
N
343
N
C
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
C
N
367
N
O
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
N
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
C
N
412
N
S
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
MG
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
N
N
451
S
C
N
452
N
C
N
453
N
O
N
454
N
C
N
455
N
C
N
456
N
C
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
N
N
468
S
C
N
469
N
C
N
470
N
O
N
471
N
C
N
472
N
O
N
473
N
O
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
N
N
482
S
C
N
483
N
C
N
484
N
O
N
485
R
C
N
486
N
O
N
487
N
C
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
N
N
499
S
C
N
500
N
C
N
501
N
O
N
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
C
Y
506
N
C
Y
507
N
C
Y
508
N
C
N
509
N
O
N
510
N
O
N
511
N
H
N
512
N
H
N
513
N
H
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
N
N
523
S
C
N
524
N
C
N
525
N
O
N
526
N
C
N
527
N
C
N
528
N
C
N
529
N
O
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
doub
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
Y
161
N
sing
Y
162
N
sing
Y
163
N
doub
N
164
N
sing
Y
165
N
sing
N
166
N
sing
Y
167
N
doub
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
Y
294
N
sing
Y
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
doub
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
sing
Y
322
N
doub
Y
323
N
doub
N
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
doub
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
Y
429
N
doub
Y
430
N
sing
Y
431
N
sing
N
432
N
sing
Y
433
N
doub
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
doub
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
doub
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
doub
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
Y
498
N
doub
Y
499
N
sing
Y
500
N
sing
N
501
N
sing
Y
502
N
doub
N
503
N
sing
Y
504
N
doub
N
505
N
sing
Y
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
doub
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
42
1152
1161
10.1093/nar/gkt936
24150947
Structures of bacterial polynucleotide kinase in a Michaelis complex with GTP*Mg2+ and 5'-OH oligonucleotide and a product complex with GDP*Mg2+ and 5'-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition.
2014
10.2210/pdb4mdf/pdb
pdb_00004mdf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
130
1
PIXEL
2013-07-24
DECTRIS PILATUS 6M
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.1
1.0
X25
NSLS
1.1
SYNCHROTRON
NSLS BEAMLINE X25
19487.328
Metallophosphoesterase
D38N, L137M
2
man
polymer
1470.998
DNA (5'-D(*CP*CP*TP*GP*T)-3')
2
syn
polymer
523.180
GUANOSINE-5'-TRIPHOSPHATE
2
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
192.124
CITRIC ACID
1
syn
non-polymer
18.015
water
395
nat
water
no
no
SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSNFCRGLVSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA
TNVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE
EVEEVVFERQP
SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSNFCRGLVSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDA
TNVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE
EVEEVVFERQP
A,B
polypeptide(L)
no
no
(DC)(DC)(DT)(DG)(DT)
CCTGT
C,D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 27405 / DSM 1237
sample
Cthe_2768
203119
Clostridium thermocellum
562
Escherichia coli
1
2.75
55.25
VAPOR DIFFUSION, HANGING DROP
5.0
100 mM sodium citrate, pH 5.0, 2 mM guanosine triphosphate, 100mM magnesium chloride,18-24% PEG 6000,1.1 mM short DNA strand, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
298.0
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
1
0
2013-11-06
1
1
2014-02-12
1
2
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-08-22
REL
REL
GTP
GUANOSINE-5'-TRIPHOSPHATE
MG
MAGNESIUM ION
CIT
CITRIC ACID
HOH
water
obtained from commercial synthetic source
sample
GTP
1001
3
GTP
GTP
1001
A
MG
1002
4
MG
MG
1002
A
CIT
1
5
CIT
CIT
1003
A
GTP
1001
3
GTP
GTP
1001
B
MG
1002
4
MG
MG
1002
B
HOH
1
6
HOH
HOH
1101
A
HOH
2
6
HOH
HOH
1102
A
HOH
3
6
HOH
HOH
1103
A
HOH
7
6
HOH
HOH
1104
A
HOH
9
6
HOH
HOH
1105
A
HOH
13
6
HOH
HOH
1106
A
HOH
15
6
HOH
HOH
1107
A
HOH
17
6
HOH
HOH
1108
A
HOH
19
6
HOH
HOH
1109
A
HOH
21
6
HOH
HOH
1110
A
HOH
22
6
HOH
HOH
1111
A
HOH
24
6
HOH
HOH
1112
A
HOH
26
6
HOH
HOH
1113
A
HOH
28
6
HOH
HOH
1114
A
HOH
29
6
HOH
HOH
1115
A
HOH
31
6
HOH
HOH
1116
A
HOH
36
6
HOH
HOH
1117
A
HOH
37
6
HOH
HOH
1118
A
HOH
38
6
HOH
HOH
1119
A
HOH
40
6
HOH
HOH
1120
A
HOH
43
6
HOH
HOH
1121
A
HOH
46
6
HOH
HOH
1122
A
HOH
47
6
HOH
HOH
1123
A
HOH
50
6
HOH
HOH
1124
A
HOH
57
6
HOH
HOH
1125
A
HOH
58
6
HOH
HOH
1126
A
HOH
60
6
HOH
HOH
1127
A
HOH
61
6
HOH
HOH
1128
A
HOH
64
6
HOH
HOH
1129
A
HOH
65
6
HOH
HOH
1130
A
HOH
69
6
HOH
HOH
1131
A
HOH
71
6
HOH
HOH
1132
A
HOH
74
6
HOH
HOH
1133
A
HOH
76
6
HOH
HOH
1134
A
HOH
78
6
HOH
HOH
1135
A
HOH
80
6
HOH
HOH
1136
A
HOH
82
6
HOH
HOH
1137
A
HOH
83
6
HOH
HOH
1138
A
HOH
88
6
HOH
HOH
1139
A
HOH
90
6
HOH
HOH
1140
A
HOH
92
6
HOH
HOH
1141
A
HOH
99
6
HOH
HOH
1142
A
HOH
104
6
HOH
HOH
1143
A
HOH
106
6
HOH
HOH
1144
A
HOH
107
6
HOH
HOH
1145
A
HOH
108
6
HOH
HOH
1146
A
HOH
114
6
HOH
HOH
1147
A
HOH
115
6
HOH
HOH
1148
A
HOH
116
6
HOH
HOH
1149
A
HOH
117
6
HOH
HOH
1150
A
HOH
118
6
HOH
HOH
1151
A
HOH
119
6
HOH
HOH
1152
A
HOH
120
6
HOH
HOH
1153
A
HOH
121
6
HOH
HOH
1154
A
HOH
123
6
HOH
HOH
1155
A
HOH
126
6
HOH
HOH
1156
A
HOH
130
6
HOH
HOH
1157
A
HOH
131
6
HOH
HOH
1158
A
HOH
136
6
HOH
HOH
1159
A
HOH
140
6
HOH
HOH
1160
A
HOH
144
6
HOH
HOH
1161
A
HOH
145
6
HOH
HOH
1162
A
HOH
149
6
HOH
HOH
1163
A
HOH
150
6
HOH
HOH
1164
A
HOH
151
6
HOH
HOH
1165
A
HOH
152
6
HOH
HOH
1166
A
HOH
153
6
HOH
HOH
1167
A
HOH
154
6
HOH
HOH
1168
A
HOH
157
6
HOH
HOH
1169
A
HOH
161
6
HOH
HOH
1170
A
HOH
162
6
HOH
HOH
1171
A
HOH
163
6
HOH
HOH
1172
A
HOH
166
6
HOH
HOH
1173
A
HOH
167
6
HOH
HOH
1174
A
HOH
171
6
HOH
HOH
1175
A
HOH
173
6
HOH
HOH
1176
A
HOH
175
6
HOH
HOH
1177
A
HOH
176
6
HOH
HOH
1178
A
HOH
177
6
HOH
HOH
1179
A
HOH
178
6
HOH
HOH
1180
A
HOH
179
6
HOH
HOH
1181
A
HOH
184
6
HOH
HOH
1182
A
HOH
187
6
HOH
HOH
1183
A
HOH
196
6
HOH
HOH
1184
A
HOH
200
6
HOH
HOH
1185
A
HOH
201
6
HOH
HOH
1186
A
HOH
202
6
HOH
HOH
1187
A
HOH
205
6
HOH
HOH
1188
A
HOH
208
6
HOH
HOH
1189
A
HOH
209
6
HOH
HOH
1190
A
HOH
213
6
HOH
HOH
1191
A
HOH
215
6
HOH
HOH
1192
A
HOH
217
6
HOH
HOH
1193
A
HOH
222
6
HOH
HOH
1194
A
HOH
223
6
HOH
HOH
1195
A
HOH
225
6
HOH
HOH
1196
A
HOH
232
6
HOH
HOH
1197
A
HOH
233
6
HOH
HOH
1198
A
HOH
234
6
HOH
HOH
1199
A
HOH
236
6
HOH
HOH
1200
A
HOH
238
6
HOH
HOH
1201
A
HOH
240
6
HOH
HOH
1202
A
HOH
242
6
HOH
HOH
1203
A
HOH
243
6
HOH
HOH
1204
A
HOH
246
6
HOH
HOH
1205
A
HOH
247
6
HOH
HOH
1206
A
HOH
252
6
HOH
HOH
1207
A
HOH
254
6
HOH
HOH
1208
A
HOH
255
6
HOH
HOH
1209
A
HOH
256
6
HOH
HOH
1210
A
HOH
258
6
HOH
HOH
1211
A
HOH
264
6
HOH
HOH
1212
A
HOH
267
6
HOH
HOH
1213
A
HOH
268
6
HOH
HOH
1214
A
HOH
269
6
HOH
HOH
1215
A
HOH
272
6
HOH
HOH
1216
A
HOH
273
6
HOH
HOH
1217
A
HOH
276
6
HOH
HOH
1218
A
HOH
279
6
HOH
HOH
1219
A
HOH
282
6
HOH
HOH
1220
A
HOH
283
6
HOH
HOH
1221
A
HOH
284
6
HOH
HOH
1222
A
HOH
286
6
HOH
HOH
1223
A
HOH
287
6
HOH
HOH
1224
A
HOH
288
6
HOH
HOH
1225
A
HOH
290
6
HOH
HOH
1226
A
HOH
291
6
HOH
HOH
1227
A
HOH
292
6
HOH
HOH
1228
A
HOH
293
6
HOH
HOH
1229
A
HOH
294
6
HOH
HOH
1230
A
HOH
296
6
HOH
HOH
1231
A
HOH
297
6
HOH
HOH
1232
A
HOH
302
6
HOH
HOH
1233
A
HOH
305
6
HOH
HOH
1234
A
HOH
307
6
HOH
HOH
1235
A
HOH
310
6
HOH
HOH
1236
A
HOH
311
6
HOH
HOH
1237
A
HOH
312
6
HOH
HOH
1238
A
HOH
315
6
HOH
HOH
1239
A
HOH
317
6
HOH
HOH
1240
A
HOH
318
6
HOH
HOH
1241
A
HOH
319
6
HOH
HOH
1242
A
HOH
320
6
HOH
HOH
1243
A
HOH
321
6
HOH
HOH
1244
A
HOH
327
6
HOH
HOH
1245
A
HOH
333
6
HOH
HOH
1246
A
HOH
337
6
HOH
HOH
1247
A
HOH
340
6
HOH
HOH
1248
A
HOH
342
6
HOH
HOH
1249
A
HOH
343
6
HOH
HOH
1250
A
HOH
344
6
HOH
HOH
1251
A
HOH
348
6
HOH
HOH
1252
A
HOH
350
6
HOH
HOH
1253
A
HOH
352
6
HOH
HOH
1254
A
HOH
357
6
HOH
HOH
1255
A
HOH
358
6
HOH
HOH
1256
A
HOH
359
6
HOH
HOH
1257
A
HOH
361
6
HOH
HOH
1258
A
HOH
362
6
HOH
HOH
1259
A
HOH
368
6
HOH
HOH
1260
A
HOH
369
6
HOH
HOH
1261
A
HOH
372
6
HOH
HOH
1262
A
HOH
374
6
HOH
HOH
1263
A
HOH
376
6
HOH
HOH
1264
A
HOH
377
6
HOH
HOH
1265
A
HOH
379
6
HOH
HOH
1266
A
HOH
380
6
HOH
HOH
1267
A
HOH
382
6
HOH
HOH
1268
A
HOH
383
6
HOH
HOH
1269
A
HOH
384
6
HOH
HOH
1270
A
HOH
385
6
HOH
HOH
1271
A
HOH
386
6
HOH
HOH
1272
A
HOH
387
6
HOH
HOH
1273
A
HOH
388
6
HOH
HOH
1274
A
HOH
392
6
HOH
HOH
1275
A
HOH
112
6
HOH
HOH
1276
A
HOH
4
6
HOH
HOH
1101
B
HOH
5
6
HOH
HOH
1102
B
HOH
6
6
HOH
HOH
1103
B
HOH
12
6
HOH
HOH
1104
B
HOH
14
6
HOH
HOH
1105
B
HOH
16
6
HOH
HOH
1106
B
HOH
18
6
HOH
HOH
1107
B
HOH
20
6
HOH
HOH
1108
B
HOH
23
6
HOH
HOH
1109
B
HOH
25
6
HOH
HOH
1110
B
HOH
27
6
HOH
HOH
1111
B
HOH
30
6
HOH
HOH
1112
B
HOH
32
6
HOH
HOH
1113
B
HOH
33
6
HOH
HOH
1114
B
HOH
34
6
HOH
HOH
1115
B
HOH
35
6
HOH
HOH
1116
B
HOH
39
6
HOH
HOH
1117
B
HOH
41
6
HOH
HOH
1118
B
HOH
42
6
HOH
HOH
1119
B
HOH
48
6
HOH
HOH
1120
B
HOH
49
6
HOH
HOH
1121
B
HOH
51
6
HOH
HOH
1122
B
HOH
52
6
HOH
HOH
1123
B
HOH
53
6
HOH
HOH
1124
B
HOH
54
6
HOH
HOH
1125
B
HOH
55
6
HOH
HOH
1126
B
HOH
56
6
HOH
HOH
1127
B
HOH
59
6
HOH
HOH
1128
B
HOH
62
6
HOH
HOH
1129
B
HOH
63
6
HOH
HOH
1130
B
HOH
66
6
HOH
HOH
1131
B
HOH
67
6
HOH
HOH
1132
B
HOH
68
6
HOH
HOH
1133
B
HOH
70
6
HOH
HOH
1134
B
HOH
72
6
HOH
HOH
1135
B
HOH
73
6
HOH
HOH
1136
B
HOH
75
6
HOH
HOH
1137
B
HOH
77
6
HOH
HOH
1138
B
HOH
79
6
HOH
HOH
1139
B
HOH
81
6
HOH
HOH
1140
B
HOH
85
6
HOH
HOH
1141
B
HOH
86
6
HOH
HOH
1142
B
HOH
87
6
HOH
HOH
1143
B
HOH
89
6
HOH
HOH
1144
B
HOH
91
6
HOH
HOH
1145
B
HOH
93
6
HOH
HOH
1146
B
HOH
94
6
HOH
HOH
1147
B
HOH
95
6
HOH
HOH
1148
B
HOH
98
6
HOH
HOH
1149
B
HOH
102
6
HOH
HOH
1150
B
HOH
103
6
HOH
HOH
1151
B
HOH
105
6
HOH
HOH
1152
B
HOH
110
6
HOH
HOH
1153
B
HOH
111
6
HOH
HOH
1154
B
HOH
113
6
HOH
HOH
1155
B
HOH
122
6
HOH
HOH
1156
B
HOH
125
6
HOH
HOH
1157
B
HOH
127
6
HOH
HOH
1158
B
HOH
129
6
HOH
HOH
1159
B
HOH
132
6
HOH
HOH
1160
B
HOH
133
6
HOH
HOH
1161
B
HOH
134
6
HOH
HOH
1162
B
HOH
135
6
HOH
HOH
1163
B
HOH
138
6
HOH
HOH
1164
B
HOH
139
6
HOH
HOH
1165
B
HOH
142
6
HOH
HOH
1166
B
HOH
143
6
HOH
HOH
1167
B
HOH
147
6
HOH
HOH
1168
B
HOH
148
6
HOH
HOH
1169
B
HOH
155
6
HOH
HOH
1170
B
HOH
156
6
HOH
HOH
1171
B
HOH
158
6
HOH
HOH
1172
B
HOH
159
6
HOH
HOH
1173
B
HOH
160
6
HOH
HOH
1174
B
HOH
164
6
HOH
HOH
1175
B
HOH
165
6
HOH
HOH
1176
B
HOH
168
6
HOH
HOH
1177
B
HOH
169
6
HOH
HOH
1178
B
HOH
170
6
HOH
HOH
1179
B
HOH
172
6
HOH
HOH
1180
B
HOH
174
6
HOH
HOH
1181
B
HOH
180
6
HOH
HOH
1182
B
HOH
183
6
HOH
HOH
1183
B
HOH
186
6
HOH
HOH
1184
B
HOH
189
6
HOH
HOH
1185
B
HOH
190
6
HOH
HOH
1186
B
HOH
191
6
HOH
HOH
1187
B
HOH
192
6
HOH
HOH
1188
B
HOH
193
6
HOH
HOH
1189
B
HOH
194
6
HOH
HOH
1190
B
HOH
198
6
HOH
HOH
1191
B
HOH
199
6
HOH
HOH
1192
B
HOH
203
6
HOH
HOH
1193
B
HOH
204
6
HOH
HOH
1194
B
HOH
206
6
HOH
HOH
1195
B
HOH
207
6
HOH
HOH
1196
B
HOH
210
6
HOH
HOH
1197
B
HOH
211
6
HOH
HOH
1198
B
HOH
216
6
HOH
HOH
1199
B
HOH
218
6
HOH
HOH
1200
B
HOH
219
6
HOH
HOH
1201
B
HOH
220
6
HOH
HOH
1202
B
HOH
221
6
HOH
HOH
1203
B
HOH
224
6
HOH
HOH
1204
B
HOH
226
6
HOH
HOH
1205
B
HOH
228
6
HOH
HOH
1206
B
HOH
229
6
HOH
HOH
1207
B
HOH
230
6
HOH
HOH
1208
B
HOH
231
6
HOH
HOH
1209
B
HOH
235
6
HOH
HOH
1210
B
HOH
239
6
HOH
HOH
1211
B
HOH
248
6
HOH
HOH
1212
B
HOH
249
6
HOH
HOH
1213
B
HOH
250
6
HOH
HOH
1214
B
HOH
251
6
HOH
HOH
1215
B
HOH
253
6
HOH
HOH
1216
B
HOH
257
6
HOH
HOH
1217
B
HOH
259
6
HOH
HOH
1218
B
HOH
260
6
HOH
HOH
1219
B
HOH
261
6
HOH
HOH
1220
B
HOH
262
6
HOH
HOH
1221
B
HOH
263
6
HOH
HOH
1222
B
HOH
265
6
HOH
HOH
1223
B
HOH
270
6
HOH
HOH
1224
B
HOH
271
6
HOH
HOH
1225
B
HOH
274
6
HOH
HOH
1226
B
HOH
277
6
HOH
HOH
1227
B
HOH
278
6
HOH
HOH
1228
B
HOH
280
6
HOH
HOH
1229
B
HOH
285
6
HOH
HOH
1230
B
HOH
289
6
HOH
HOH
1231
B
HOH
295
6
HOH
HOH
1232
B
HOH
298
6
HOH
HOH
1233
B
HOH
299
6
HOH
HOH
1234
B
HOH
300
6
HOH
HOH
1235
B
HOH
301
6
HOH
HOH
1236
B
HOH
303
6
HOH
HOH
1237
B
HOH
304
6
HOH
HOH
1238
B
HOH
306
6
HOH
HOH
1239
B
HOH
308
6
HOH
HOH
1240
B
HOH
309
6
HOH
HOH
1241
B
HOH
313
6
HOH
HOH
1242
B
HOH
314
6
HOH
HOH
1243
B
HOH
316
6
HOH
HOH
1244
B
HOH
323
6
HOH
HOH
1245
B
HOH
324
6
HOH
HOH
1246
B
HOH
325
6
HOH
HOH
1247
B
HOH
326
6
HOH
HOH
1248
B
HOH
328
6
HOH
HOH
1249
B
HOH
329
6
HOH
HOH
1250
B
HOH
330
6
HOH
HOH
1251
B
HOH
331
6
HOH
HOH
1252
B
HOH
332
6
HOH
HOH
1253
B
HOH
335
6
HOH
HOH
1254
B
HOH
338
6
HOH
HOH
1255
B
HOH
339
6
HOH
HOH
1256
B
HOH
345
6
HOH
HOH
1257
B
HOH
346
6
HOH
HOH
1258
B
HOH
347
6
HOH
HOH
1259
B
HOH
349
6
HOH
HOH
1260
B
HOH
351
6
HOH
HOH
1261
B
HOH
353
6
HOH
HOH
1262
B
HOH
354
6
HOH
HOH
1263
B
HOH
355
6
HOH
HOH
1264
B
HOH
356
6
HOH
HOH
1265
B
HOH
360
6
HOH
HOH
1266
B
HOH
363
6
HOH
HOH
1267
B
HOH
364
6
HOH
HOH
1268
B
HOH
365
6
HOH
HOH
1269
B
HOH
367
6
HOH
HOH
1270
B
HOH
370
6
HOH
HOH
1271
B
HOH
371
6
HOH
HOH
1272
B
HOH
373
6
HOH
HOH
1273
B
HOH
375
6
HOH
HOH
1274
B
HOH
378
6
HOH
HOH
1275
B
HOH
381
6
HOH
HOH
1276
B
HOH
389
6
HOH
HOH
1277
B
HOH
390
6
HOH
HOH
1278
B
HOH
391
6
HOH
HOH
1279
B
HOH
393
6
HOH
HOH
1280
B
HOH
394
6
HOH
HOH
1281
B
HOH
395
6
HOH
HOH
1282
B
HOH
45
6
HOH
HOH
1283
B
HOH
8
6
HOH
HOH
101
C
HOH
96
6
HOH
HOH
102
C
HOH
109
6
HOH
HOH
103
C
HOH
128
6
HOH
HOH
104
C
HOH
137
6
HOH
HOH
105
C
HOH
181
6
HOH
HOH
106
C
HOH
182
6
HOH
HOH
107
C
HOH
197
6
HOH
HOH
108
C
HOH
212
6
HOH
HOH
109
C
HOH
227
6
HOH
HOH
110
C
HOH
244
6
HOH
HOH
111
C
HOH
275
6
HOH
HOH
112
C
HOH
281
6
HOH
HOH
113
C
HOH
336
6
HOH
HOH
114
C
HOH
366
6
HOH
HOH
115
C
HOH
10
6
HOH
HOH
101
D
HOH
11
6
HOH
HOH
102
D
HOH
44
6
HOH
HOH
103
D
HOH
84
6
HOH
HOH
104
D
HOH
97
6
HOH
HOH
105
D
HOH
100
6
HOH
HOH
106
D
HOH
101
6
HOH
HOH
107
D
HOH
124
6
HOH
HOH
108
D
HOH
141
6
HOH
HOH
109
D
HOH
146
6
HOH
HOH
110
D
HOH
185
6
HOH
HOH
111
D
HOH
188
6
HOH
HOH
112
D
HOH
195
6
HOH
HOH
113
D
HOH
214
6
HOH
HOH
114
D
HOH
237
6
HOH
HOH
115
D
HOH
241
6
HOH
HOH
116
D
HOH
245
6
HOH
HOH
117
D
HOH
266
6
HOH
HOH
118
D
HOH
322
6
HOH
HOH
119
D
HOH
334
6
HOH
HOH
120
D
HOH
341
6
HOH
HOH
121
D
SER
0
n
1
SER
0
A
MET
1
n
2
MET
1
A
LYS
2
n
3
LYS
2
A
LEU
3
n
4
LEU
3
A
THR
4
n
5
THR
4
A
ILE
5
n
6
ILE
5
A
PRO
6
n
7
PRO
6
A
GLU
7
n
8
GLU
7
A
LEU
8
n
9
LEU
8
A
SER
9
n
10
SER
9
A
LEU
10
n
11
LEU
10
A
VAL
11
n
12
VAL
11
A
VAL
12
n
13
VAL
12
A
LEU
13
n
14
LEU
13
A
ILE
14
n
15
ILE
14
A
GLY
15
n
16
GLY
15
A
SER
16
n
17
SER
16
A
SER
17
n
18
SER
17
A
GLY
18
n
19
GLY
18
A
SER
19
n
20
SER
19
A
GLY
20
n
21
GLY
20
A
LYS
21
n
22
LYS
21
A
SER
22
n
23
SER
22
A
THR
23
n
24
THR
23
A
PHE
24
n
25
PHE
24
A
ALA
25
n
26
ALA
25
A
LYS
26
n
27
LYS
26
A
LYS
27
n
28
LYS
27
A
HIS
28
n
29
HIS
28
A
PHE
29
n
30
PHE
29
A
LYS
30
n
31
LYS
30
A
PRO
31
n
32
PRO
31
A
THR
32
n
33
THR
32
A
GLU
33
n
34
GLU
33
A
VAL
34
n
35
VAL
34
A
ILE
35
n
36
ILE
35
A
SER
36
n
37
SER
36
A
SER
37
n
38
SER
37
A
ASN
38
n
39
ASN
38
A
PHE
39
n
40
PHE
39
A
CYS
40
n
41
CYS
40
A
ARG
41
n
42
ARG
41
A
GLY
42
n
43
GLY
42
A
LEU
43
n
44
LEU
43
A
VAL
44
n
45
VAL
44
A
SER
45
n
46
SER
45
A
ASP
46
n
47
ASP
46
A
ASP
47
n
48
ASP
47
A
GLU
48
n
49
GLU
48
A
ASN
49
n
50
ASN
49
A
ASP
50
n
51
ASP
50
A
GLN
51
n
52
GLN
51
A
THR
52
n
53
THR
52
A
VAL
53
n
54
VAL
53
A
THR
54
n
55
THR
54
A
GLY
55
n
56
GLY
55
A
ALA
56
n
57
ALA
56
A
ALA
57
n
58
ALA
57
A
PHE
58
n
59
PHE
58
A
ASP
59
n
60
ASP
59
A
VAL
60
n
61
VAL
60
A
LEU
61
n
62
LEU
61
A
HIS
62
n
63
HIS
62
A
TYR
63
n
64
TYR
63
A
ILE
64
n
65
ILE
64
A
VAL
65
n
66
VAL
65
A
SER
66
n
67
SER
66
A
LYS
67
n
68
LYS
67
A
ARG
68
n
69
ARG
68
A
LEU
69
n
70
LEU
69
A
GLN
70
n
71
GLN
70
A
LEU
71
n
72
LEU
71
A
GLY
72
n
73
GLY
72
A
LYS
73
n
74
LYS
73
A
LEU
74
n
75
LEU
74
A
THR
75
n
76
THR
75
A
VAL
76
n
77
VAL
76
A
VAL
77
n
78
VAL
77
A
ASP
78
n
79
ASP
78
A
ALA
79
n
80
ALA
79
A
THR
80
n
81
THR
80
A
ASN
81
n
82
ASN
81
A
VAL
82
n
83
VAL
82
A
GLN
83
n
84
GLN
83
A
GLU
84
n
85
GLU
84
A
SER
85
n
86
SER
85
A
ALA
86
n
87
ALA
86
A
ARG
87
n
88
ARG
87
A
LYS
88
n
89
LYS
88
A
PRO
89
n
90
PRO
89
A
LEU
90
n
91
LEU
90
A
ILE
91
n
92
ILE
91
A
GLU
92
n
93
GLU
92
A
ILE
93
n
94
ILE
93
A
ALA
94
n
95
ALA
94
A
LYS
95
n
96
LYS
95
A
ASP
96
n
97
ASP
96
A
TYR
97
n
98
TYR
97
A
HIS
98
n
99
HIS
98
A
CYS
99
n
100
CYS
99
A
PHE
100
n
101
PHE
100
A
PRO
101
n
102
PRO
101
A
VAL
102
n
103
VAL
102
A
ALA
103
n
104
ALA
103
A
VAL
104
n
105
VAL
104
A
VAL
105
n
106
VAL
105
A
PHE
106
n
107
PHE
106
A
ASN
107
n
108
ASN
107
A
LEU
108
n
109
LEU
108
A
PRO
109
n
110
PRO
109
A
GLU
110
n
111
GLU
110
A
LYS
111
n
112
LYS
111
A
VAL
112
n
113
VAL
112
A
CYS
113
n
114
CYS
113
A
GLN
114
n
115
GLN
114
A
GLU
115
n
116
GLU
115
A
ARG
116
n
117
ARG
116
A
ASN
117
n
118
ASN
117
A
LYS
118
n
119
LYS
118
A
ASN
119
n
120
ASN
119
A
ARG
120
n
121
ARG
120
A
THR
121
n
122
THR
121
A
ASP
122
n
123
ASP
122
A
ARG
123
n
124
ARG
123
A
GLN
124
n
125
GLN
124
A
VAL
125
n
126
VAL
125
A
GLU
126
n
127
GLU
126
A
GLU
127
n
128
GLU
127
A
TYR
128
n
129
TYR
128
A
VAL
129
n
130
VAL
129
A
ILE
130
n
131
ILE
130
A
ARG
131
n
132
ARG
131
A
LYS
132
n
133
LYS
132
A
HIS
133
n
134
HIS
133
A
THR
134
n
135
THR
134
A
GLN
135
n
136
GLN
135
A
GLN
136
n
137
GLN
136
A
MET
137
n
138
MET
137
A
LYS
138
n
139
LYS
138
A
LYS
139
n
140
LYS
139
A
SER
140
n
141
SER
140
A
ILE
141
n
142
ILE
141
A
LYS
142
n
143
LYS
142
A
GLY
143
n
144
GLY
143
A
LEU
144
n
145
LEU
144
A
GLN
145
n
146
GLN
145
A
ARG
146
n
147
ARG
146
A
GLU
147
n
148
GLU
147
A
GLY
148
n
149
GLY
148
A
PHE
149
n
150
PHE
149
A
ARG
150
n
151
ARG
150
A
TYR
151
n
152
TYR
151
A
VAL
152
n
153
VAL
152
A
TYR
153
n
154
TYR
153
A
ILE
154
n
155
ILE
154
A
LEU
155
n
156
LEU
155
A
ASN
156
n
157
ASN
156
A
SER
157
n
158
SER
157
A
PRO
158
n
159
PRO
158
A
GLU
159
n
160
GLU
159
A
GLU
160
n
161
GLU
160
A
VAL
161
n
162
VAL
161
A
GLU
162
n
163
GLU
162
A
GLU
163
n
164
GLU
163
A
VAL
164
n
165
VAL
164
A
VAL
165
n
166
VAL
165
A
PHE
166
n
167
PHE
166
A
GLU
167
n
168
GLU
167
A
ARG
168
n
169
ARG
168
A
GLN
169
n
170
GLN
169
A
PRO
170
n
171
PRO
170
A
SER
0
n
1
SER
0
B
MET
1
n
2
MET
1
B
LYS
2
n
3
LYS
2
B
LEU
3
n
4
LEU
3
B
THR
4
n
5
THR
4
B
ILE
5
n
6
ILE
5
B
PRO
6
n
7
PRO
6
B
GLU
7
n
8
GLU
7
B
LEU
8
n
9
LEU
8
B
SER
9
n
10
SER
9
B
LEU
10
n
11
LEU
10
B
VAL
11
n
12
VAL
11
B
VAL
12
n
13
VAL
12
B
LEU
13
n
14
LEU
13
B
ILE
14
n
15
ILE
14
B
GLY
15
n
16
GLY
15
B
SER
16
n
17
SER
16
B
SER
17
n
18
SER
17
B
GLY
18
n
19
GLY
18
B
SER
19
n
20
SER
19
B
GLY
20
n
21
GLY
20
B
LYS
21
n
22
LYS
21
B
SER
22
n
23
SER
22
B
THR
23
n
24
THR
23
B
PHE
24
n
25
PHE
24
B
ALA
25
n
26
ALA
25
B
LYS
26
n
27
LYS
26
B
LYS
27
n
28
LYS
27
B
HIS
28
n
29
HIS
28
B
PHE
29
n
30
PHE
29
B
LYS
30
n
31
LYS
30
B
PRO
31
n
32
PRO
31
B
THR
32
n
33
THR
32
B
GLU
33
n
34
GLU
33
B
VAL
34
n
35
VAL
34
B
ILE
35
n
36
ILE
35
B
SER
36
n
37
SER
36
B
SER
37
n
38
SER
37
B
ASN
38
n
39
ASN
38
B
PHE
39
n
40
PHE
39
B
CYS
40
n
41
CYS
40
B
ARG
41
n
42
ARG
41
B
GLY
42
n
43
GLY
42
B
LEU
43
n
44
LEU
43
B
VAL
44
n
45
VAL
44
B
SER
45
n
46
SER
45
B
ASP
46
n
47
ASP
46
B
ASP
47
n
48
ASP
47
B
GLU
48
n
49
GLU
48
B
ASN
49
n
50
ASN
49
B
ASP
50
n
51
ASP
50
B
GLN
51
n
52
GLN
51
B
THR
52
n
53
THR
52
B
VAL
53
n
54
VAL
53
B
THR
54
n
55
THR
54
B
GLY
55
n
56
GLY
55
B
ALA
56
n
57
ALA
56
B
ALA
57
n
58
ALA
57
B
PHE
58
n
59
PHE
58
B
ASP
59
n
60
ASP
59
B
VAL
60
n
61
VAL
60
B
LEU
61
n
62
LEU
61
B
HIS
62
n
63
HIS
62
B
TYR
63
n
64
TYR
63
B
ILE
64
n
65
ILE
64
B
VAL
65
n
66
VAL
65
B
SER
66
n
67
SER
66
B
LYS
67
n
68
LYS
67
B
ARG
68
n
69
ARG
68
B
LEU
69
n
70
LEU
69
B
GLN
70
n
71
GLN
70
B
LEU
71
n
72
LEU
71
B
GLY
72
n
73
GLY
72
B
LYS
73
n
74
LYS
73
B
LEU
74
n
75
LEU
74
B
THR
75
n
76
THR
75
B
VAL
76
n
77
VAL
76
B
VAL
77
n
78
VAL
77
B
ASP
78
n
79
ASP
78
B
ALA
79
n
80
ALA
79
B
THR
80
n
81
THR
80
B
ASN
81
n
82
ASN
81
B
VAL
82
n
83
VAL
82
B
GLN
83
n
84
GLN
83
B
GLU
84
n
85
GLU
84
B
SER
85
n
86
SER
85
B
ALA
86
n
87
ALA
86
B
ARG
87
n
88
ARG
87
B
LYS
88
n
89
LYS
88
B
PRO
89
n
90
PRO
89
B
LEU
90
n
91
LEU
90
B
ILE
91
n
92
ILE
91
B
GLU
92
n
93
GLU
92
B
ILE
93
n
94
ILE
93
B
ALA
94
n
95
ALA
94
B
LYS
95
n
96
LYS
95
B
ASP
96
n
97
ASP
96
B
TYR
97
n
98
TYR
97
B
HIS
98
n
99
HIS
98
B
CYS
99
n
100
CYS
99
B
PHE
100
n
101
PHE
100
B
PRO
101
n
102
PRO
101
B
VAL
102
n
103
VAL
102
B
ALA
103
n
104
ALA
103
B
VAL
104
n
105
VAL
104
B
VAL
105
n
106
VAL
105
B
PHE
106
n
107
PHE
106
B
ASN
107
n
108
ASN
107
B
LEU
108
n
109
LEU
108
B
PRO
109
n
110
PRO
109
B
GLU
110
n
111
GLU
110
B
LYS
111
n
112
LYS
111
B
VAL
112
n
113
VAL
112
B
CYS
113
n
114
CYS
113
B
GLN
114
n
115
GLN
114
B
GLU
115
n
116
GLU
115
B
ARG
116
n
117
ARG
116
B
ASN
117
n
118
ASN
117
B
LYS
118
n
119
LYS
118
B
ASN
119
n
120
ASN
119
B
ARG
120
n
121
ARG
120
B
THR
121
n
122
THR
121
B
ASP
122
n
123
ASP
122
B
ARG
123
n
124
ARG
123
B
GLN
124
n
125
GLN
124
B
VAL
125
n
126
VAL
125
B
GLU
126
n
127
GLU
126
B
GLU
127
n
128
GLU
127
B
TYR
128
n
129
TYR
128
B
VAL
129
n
130
VAL
129
B
ILE
130
n
131
ILE
130
B
ARG
131
n
132
ARG
131
B
LYS
132
n
133
LYS
132
B
HIS
133
n
134
HIS
133
B
THR
134
n
135
THR
134
B
GLN
135
n
136
GLN
135
B
GLN
136
n
137
GLN
136
B
MET
137
n
138
MET
137
B
LYS
138
n
139
LYS
138
B
LYS
139
n
140
LYS
139
B
SER
140
n
141
SER
140
B
ILE
141
n
142
ILE
141
B
LYS
142
n
143
LYS
142
B
GLY
143
n
144
GLY
143
B
LEU
144
n
145
LEU
144
B
GLN
145
n
146
GLN
145
B
ARG
146
n
147
ARG
146
B
GLU
147
n
148
GLU
147
B
GLY
148
n
149
GLY
148
B
PHE
149
n
150
PHE
149
B
ARG
150
n
151
ARG
150
B
TYR
151
n
152
TYR
151
B
VAL
152
n
153
VAL
152
B
TYR
153
n
154
TYR
153
B
ILE
154
n
155
ILE
154
B
LEU
155
n
156
LEU
155
B
ASN
156
n
157
ASN
156
B
SER
157
n
158
SER
157
B
PRO
158
n
159
PRO
158
B
GLU
159
n
160
GLU
159
B
GLU
160
n
161
GLU
160
B
VAL
161
n
162
VAL
161
B
GLU
162
n
163
GLU
162
B
GLU
163
n
164
GLU
163
B
VAL
164
n
165
VAL
164
B
VAL
165
n
166
VAL
165
B
PHE
166
n
167
PHE
166
B
GLU
167
n
168
GLU
167
B
ARG
168
n
169
ARG
168
B
GLN
169
n
170
GLN
169
B
PRO
170
n
171
PRO
170
B
DC
1
n
1
DC
1
C
DC
2
n
2
DC
2
C
DT
3
n
3
DT
3
C
DG
4
n
4
DG
4
C
DT
5
n
5
DT
5
C
DC
1
n
1
DC
1
D
DC
2
n
2
DC
2
D
DT
3
n
3
DT
3
D
DG
4
n
4
DG
4
D
DT
5
n
5
DT
5
D
author_defined_assembly
4
tetrameric
A
SER
22
A
OG
SER
23
1_555
A
MG
1002
F
MG
MG
1_555
A
GTP
1001
E
O1B
GTP
1_555
89.4
A
SER
22
A
OG
SER
23
1_555
A
MG
1002
F
MG
MG
1_555
A
GTP
1001
E
O3G
GTP
1_555
178.4
A
GTP
1001
E
O1B
GTP
1_555
A
MG
1002
F
MG
MG
1_555
A
GTP
1001
E
O3G
GTP
1_555
90.2
A
SER
22
A
OG
SER
23
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1101
J
O
HOH
1_555
87.3
A
GTP
1001
E
O1B
GTP
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1101
J
O
HOH
1_555
175.6
A
GTP
1001
E
O3G
GTP
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1101
J
O
HOH
1_555
93.0
A
SER
22
A
OG
SER
23
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1102
J
O
HOH
1_555
90.1
A
GTP
1001
E
O1B
GTP
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1102
J
O
HOH
1_555
88.5
A
GTP
1001
E
O3G
GTP
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1102
J
O
HOH
1_555
88.4
A
HOH
1101
J
O
HOH
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1102
J
O
HOH
1_555
88.6
A
SER
22
A
OG
SER
23
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1103
J
O
HOH
1_555
87.1
A
GTP
1001
E
O1B
GTP
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1103
J
O
HOH
1_555
94.0
A
GTP
1001
E
O3G
GTP
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1103
J
O
HOH
1_555
94.4
A
HOH
1101
J
O
HOH
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1103
J
O
HOH
1_555
88.7
A
HOH
1102
J
O
HOH
1_555
A
MG
1002
F
MG
MG
1_555
A
HOH
1103
J
O
HOH
1_555
176.3
B
SER
22
B
OG
SER
23
1_555
B
MG
1002
I
MG
MG
1_555
B
GTP
1001
H
O3G
GTP
1_555
177.6
B
SER
22
B
OG
SER
23
1_555
B
MG
1002
I
MG
MG
1_555
B
GTP
1001
H
O1B
GTP
1_555
89.5
B
GTP
1001
H
O3G
GTP
1_555
B
MG
1002
I
MG
MG
1_555
B
GTP
1001
H
O1B
GTP
1_555
91.2
B
SER
22
B
OG
SER
23
1_555
B
MG
1002
I
MG
MG
1_555
B
HOH
1101
K
O
HOH
1_555
86.2
B
GTP
1001
H
O3G
GTP
1_555
B
MG
1002
I
MG
MG
1_555
B
HOH
1101
K
O
HOH
1_555
91.5
B
GTP
1001
H
O1B
GTP
1_555
B
MG
1002
I
MG
MG
1_555
B
HOH
1101
K
O
HOH
1_555
92.3
B
SER
22
B
OG
SER
23
1_555
B
MG
1002
I
MG
MG
1_555
B
HOH
1102
K
O
HOH
1_555
86.6
B
GTP
1001
H
O3G
GTP
1_555
B
MG
1002
I
MG
MG
1_555
B
HOH
1102
K
O
HOH
1_555
92.6
B
GTP
1001
H
O1B
GTP
1_555
B
MG
1002
I
MG
MG
1_555
B
HOH
1102
K
O
HOH
1_555
175.8
B
HOH
1101
K
O
HOH
1_555
B
MG
1002
I
MG
MG
1_555
B
HOH
1102
K
O
HOH
1_555
85.7
B
SER
22
B
OG
SER
23
1_555
B
MG
1002
I
MG
MG
1_555
B
HOH
1103
K
O
HOH
1_555
91.2
B
GTP
1001
H
O3G
GTP
1_555
B
MG
1002
I
MG
MG
1_555
B
HOH
1103
K
O
HOH
1_555
91.1
B
GTP
1001
H
O1B
GTP
1_555
B
MG
1002
I
MG
MG
1_555
B
HOH
1103
K
O
HOH
1_555
90.5
B
HOH
1101
K
O
HOH
1_555
B
MG
1002
I
MG
MG
1_555
B
HOH
1103
K
O
HOH
1_555
176.1
B
HOH
1102
K
O
HOH
1_555
B
MG
1002
I
MG
MG
1_555
B
HOH
1103
K
O
HOH
1_555
91.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
3
A
N
LEU
4
A
O
GLU
167
A
O
GLU
168
A
N
ILE
35
A
N
ILE
36
A
O
VAL
76
A
O
VAL
77
A
O
VAL
77
A
O
VAL
78
A
N
VAL
11
A
N
VAL
12
A
N
VAL
12
A
N
VAL
13
A
O
VAL
102
A
O
VAL
103
A
N
VAL
105
A
N
VAL
106
A
O
LEU
155
A
O
LEU
156
B
N
LEU
3
B
N
LEU
4
B
O
GLU
167
B
O
GLU
168
B
N
ILE
35
B
N
ILE
36
B
O
VAL
76
B
O
VAL
77
B
O
VAL
77
B
O
VAL
78
B
N
VAL
11
B
N
VAL
12
B
N
VAL
12
B
N
VAL
13
B
O
VAL
102
B
O
VAL
103
B
N
VAL
105
B
N
VAL
106
B
O
LEU
155
B
O
LEU
156
1
C
N1
DT
5
C
N1
DT
5
1
Y
1
C
C2
DT
5
C
C2
DT
5
1
Y
1
C
O2
DT
5
C
O2
DT
5
1
Y
1
C
N3
DT
5
C
N3
DT
5
1
Y
1
C
C4
DT
5
C
C4
DT
5
1
Y
1
C
O4
DT
5
C
O4
DT
5
1
Y
1
C
C5
DT
5
C
C5
DT
5
1
Y
1
C
C7
DT
5
C
C7
DT
5
1
Y
1
C
C6
DT
5
C
C6
DT
5
1
Y
1
D
C5'
DT
5
D
C5'
DT
5
1
Y
1
D
C4'
DT
5
D
C4'
DT
5
1
Y
1
D
O4'
DT
5
D
O4'
DT
5
1
Y
1
D
C3'
DT
5
D
C3'
DT
5
1
Y
1
D
O3'
DT
5
D
O3'
DT
5
1
Y
1
D
C2'
DT
5
D
C2'
DT
5
1
Y
1
D
C1'
DT
5
D
C1'
DT
5
1
Y
1
D
N1
DT
5
D
N1
DT
5
1
Y
1
D
C2
DT
5
D
C2
DT
5
1
Y
1
D
O2
DT
5
D
O2
DT
5
1
Y
1
D
N3
DT
5
D
N3
DT
5
1
Y
1
D
C4
DT
5
D
C4
DT
5
1
Y
1
D
O4
DT
5
D
O4
DT
5
1
Y
1
D
C5
DT
5
D
C5
DT
5
1
Y
1
D
C7
DT
5
D
C7
DT
5
1
Y
1
D
C6
DT
5
D
C6
DT
5
1
Y
1
A
B
O
O
HOH
HOH
1273
1277
2.03
1
B
B
O
O
HOH
HOH
1268
1271
2.14
1
B
B
O
O
HOH
HOH
1273
1279
2.15
1
A
B
O
O
HOH
HOH
1181
1229
2.16
1
B
B
O
O
HOH
HOH
1136
1271
2.17
1
A
A
O
O
HOH
HOH
1177
1244
2.17
1
2.03
0.30
108.30
110.33
D
D
D
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
A
B
O
O
HOH
HOH
1259
1272
2.10
1_555
2_455
1
A
ASP
46
75.68
-7.45
1
B
ASP
46
74.43
-7.33
0.1960
0.1632
0.1658
1.727
48.465
3896
49282
49036
7.95
99.53
0.15
8% of data chosen at random
1
1.33
MOLECULAR REPLACEMENT
18.83
0.90
1.11
ML
FLAT BULK SOLVENT MODEL
1.727
48.465
395
3381
79
169
2738
0.006
3080
1.126
4211
20.110
1211
0.070
476
0.005
506
0.2766
0.2233
1.7483
138
1532
97.00
0.2592
0.1941
1.7705
157
1561
98.00
0.1957
0.1813
1.7938
133
1572
99.00
0.2187
0.1671
1.8183
137
1577
99.00
0.2199
0.1643
1.8443
140
1593
99.00
0.2068
0.1534
1.8719
136
1575
99.00
0.1802
0.1488
1.9011
123
1598
100.00
0.1975
0.1518
1.9323
119
1591
99.00
0.1938
0.1475
1.9656
143
1635
99.00
0.2129
0.1587
2.0013
124
1585
100.00
0.1948
0.1569
2.0398
150
1602
99.00
0.1897
0.1586
2.0815
136
1586
100.00
0.1999
0.1570
2.1267
150
1587
100.00
0.2235
0.1587
2.1762
144
1578
100.00
0.1664
0.1517
2.2306
141
1599
100.00
0.2170
0.1562
2.2909
150
1611
100.00
0.2177
0.1570
2.3583
124
1606
100.00
0.2080
0.1615
2.4345
122
1655
100.00
0.1964
0.1633
2.5215
156
1593
100.00
0.2116
0.1816
2.6224
136
1620
100.00
0.2090
0.1712
2.7418
136
1620
100.00
0.1965
0.1728
2.8863
155
1609
100.00
0.1882
0.1707
3.0671
131
1645
100.00
0.2129
0.1683
3.3039
136
1660
100.00
0.1915
0.1650
3.6362
143
1634
100.00
0.1648
0.1445
4.1622
139
1666
100.00
0.1574
0.1422
5.2429
145
1674
100.00
0.1998
0.1932
48.4842
152
1776
100.00
1.727
53.0
4MDF
49311
49311
-999
-3.0
1
100.0
1.727
1.76
1
99.2
data collection
CBASS
model building
PHENIX
refinement
PHENIX
(phenix.refine: 1.8.2_1309)
data reduction
MOSFLM
data scaling
SCALA
phasing
PHENIX
Structure of bacterial polynucleotide kinase Michaelis complex bound to GTP and DNA
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
3
N
N
4
N
N
6
N
N
6
N
N
6
N
N
6
N
N
A
GLY
20
A
GLY
21
HELX_P
A
PHE
29
A
PHE
30
1
1
10
A
LYS
30
A
LYS
31
HELX_P
A
THR
32
A
THR
33
5
2
3
A
SER
37
A
SER
38
HELX_P
A
ASP
46
A
ASP
47
1
3
10
A
ASP
50
A
ASP
51
HELX_P
A
THR
52
A
THR
53
5
4
3
A
VAL
53
A
VAL
54
HELX_P
A
LEU
71
A
LEU
72
1
5
19
A
GLN
83
A
GLN
84
HELX_P
A
TYR
97
A
TYR
98
1
6
15
A
PRO
109
A
PRO
110
HELX_P
A
ARG
120
A
ARG
121
1
7
12
A
GLU
126
A
GLU
127
HELX_P
A
ILE
141
A
ILE
142
1
8
16
A
GLY
143
A
GLY
144
HELX_P
A
GLY
148
A
GLY
149
1
9
6
A
SER
157
A
SER
158
HELX_P
A
GLU
163
A
GLU
164
1
10
7
B
GLY
20
B
GLY
21
HELX_P
B
PHE
29
B
PHE
30
1
11
10
B
LYS
30
B
LYS
31
HELX_P
B
THR
32
B
THR
33
5
12
3
B
SER
37
B
SER
38
HELX_P
B
ASP
46
B
ASP
47
1
13
10
B
ASP
50
B
ASP
51
HELX_P
B
THR
52
B
THR
53
5
14
3
B
VAL
53
B
VAL
54
HELX_P
B
LEU
71
B
LEU
72
1
15
19
B
GLN
83
B
GLN
84
HELX_P
B
TYR
97
B
TYR
98
1
16
15
B
PRO
109
B
PRO
110
HELX_P
B
ARG
120
B
ARG
121
1
17
12
B
GLU
126
B
GLU
127
HELX_P
B
ILE
141
B
ILE
142
1
18
16
B
GLY
143
B
GLY
144
HELX_P
B
GLY
148
B
GLY
149
1
19
6
B
SER
157
B
SER
158
HELX_P
B
GLU
163
B
GLU
164
1
20
7
metalc
2.087
A
SER
22
A
OG
SER
23
1_555
A
MG
1002
F
MG
MG
1_555
metalc
2.056
A
GTP
1001
E
O1B
GTP
1_555
A
MG
1002
F
MG
MG
1_555
metalc
2.076
A
GTP
1001
E
O3G
GTP
1_555
A
MG
1002
F
MG
MG
1_555
metalc
2.124
A
MG
1002
F
MG
MG
1_555
A
HOH
1101
J
O
HOH
1_555
metalc
2.162
A
MG
1002
F
MG
MG
1_555
A
HOH
1102
J
O
HOH
1_555
metalc
2.107
A
MG
1002
F
MG
MG
1_555
A
HOH
1103
J
O
HOH
1_555
metalc
2.089
B
SER
22
B
OG
SER
23
1_555
B
MG
1002
I
MG
MG
1_555
metalc
2.046
B
GTP
1001
H
O3G
GTP
1_555
B
MG
1002
I
MG
MG
1_555
metalc
2.096
B
GTP
1001
H
O1B
GTP
1_555
B
MG
1002
I
MG
MG
1_555
metalc
2.057
B
MG
1002
I
MG
MG
1_555
B
HOH
1101
K
O
HOH
1_555
metalc
2.140
B
MG
1002
I
MG
MG
1_555
B
HOH
1102
K
O
HOH
1_555
metalc
2.139
B
MG
1002
I
MG
MG
1_555
B
HOH
1103
K
O
HOH
1_555
TRANSFERASE/DNA
RNA repair, P-loop phosphotransferase, Transferase, HYDROLASE-DNA complex, TRANSFERASE-DNA complex
A3DJ38_CLOTH
UNP
1
1
A3DJ38
MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLVSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDAT
NVQESARKPLIEIAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQLKKSIKGLQREGFRYVYILNSPEE
VEEVVFERQP
4MDF
PDB
2
4MDF
CCTGT
1
170
4MDF
1
170
A3DJ38
A
1
2
171
1
170
4MDF
1
170
A3DJ38
B
1
2
171
1
5
4MDF
1
5
4MDF
C
2
1
5
1
5
4MDF
1
5
4MDF
D
2
1
5
1
expression tag
SER
0
4MDF
A
A3DJ38
UNP
1
1
ASP
engineered mutation
ASN
38
4MDF
A
A3DJ38
UNP
38
39
1
LEU
engineered mutation
MET
137
4MDF
A
A3DJ38
UNP
137
138
2
expression tag
SER
0
4MDF
B
A3DJ38
UNP
1
2
ASP
engineered mutation
ASN
38
4MDF
B
A3DJ38
UNP
38
39
2
LEU
engineered mutation
MET
137
4MDF
B
A3DJ38
UNP
137
138
2
5
2
5
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
A
MET
1
A
MET
2
A
PRO
6
A
PRO
7
A
VAL
164
A
VAL
165
A
GLN
169
A
GLN
170
A
VAL
34
A
VAL
35
A
SER
36
A
SER
37
A
THR
75
A
THR
76
A
ASP
78
A
ASP
79
A
SER
9
A
SER
10
A
ILE
14
A
ILE
15
A
PHE
100
A
PHE
101
A
PHE
106
A
PHE
107
A
TYR
151
A
TYR
152
A
LEU
155
A
LEU
156
B
MET
1
B
MET
2
B
PRO
6
B
PRO
7
B
VAL
164
B
VAL
165
B
GLN
169
B
GLN
170
B
VAL
34
B
VAL
35
B
SER
36
B
SER
37
B
THR
75
B
THR
76
B
ASP
78
B
ASP
79
B
SER
9
B
SER
10
B
ILE
14
B
ILE
15
B
PHE
100
B
PHE
101
B
PHE
106
B
PHE
107
B
TYR
151
B
TYR
152
B
LEU
155
B
LEU
156
BINDING SITE FOR RESIDUE GTP A 1001
A
GTP
1001
Software
21
BINDING SITE FOR RESIDUE MG A 1002
A
MG
1002
Software
5
BINDING SITE FOR RESIDUE CIT A 1003
A
CIT
1003
Software
12
BINDING SITE FOR RESIDUE GTP B 1001
B
GTP
1001
Software
21
BINDING SITE FOR RESIDUE MG B 1002
B
MG
1002
Software
5
A
SER
16
A
SER
17
21
1_555
A
SER
17
A
SER
18
21
1_555
A
GLY
18
A
GLY
19
21
1_555
A
SER
19
A
SER
20
21
1_555
A
GLY
20
A
GLY
21
21
1_555
A
LYS
21
A
LYS
22
21
1_555
A
SER
22
A
SER
23
21
1_555
A
THR
23
A
THR
24
21
1_555
A
ASN
38
A
ASN
39
21
1_555
A
ARG
116
A
ARG
117
21
1_555
A
ARG
120
A
ARG
121
21
1_555
A
ARG
123
A
ARG
124
21
1_555
A
MG
1002
F
MG
21
1_555
A
HOH
1101
J
HOH
21
1_555
A
HOH
1102
J
HOH
21
1_555
A
HOH
1103
J
HOH
21
1_555
A
HOH
1155
J
HOH
21
1_555
A
HOH
1156
J
HOH
21
1_555
A
HOH
1186
J
HOH
21
1_555
A
HOH
1211
J
HOH
21
1_555
C
DC
1
C
DC
1
21
1_555
A
SER
22
A
SER
23
5
1_555
A
GTP
1001
E
GTP
5
1_555
A
HOH
1101
J
HOH
5
1_555
A
HOH
1102
J
HOH
5
1_555
A
HOH
1103
J
HOH
5
1_555
A
HIS
62
A
HIS
63
12
1_555
A
TYR
63
A
TYR
64
12
1_555
A
SER
66
A
SER
67
12
1_555
A
GLU
92
A
GLU
93
12
1_555
A
ILE
93
A
ILE
94
12
1_555
A
HOH
1151
J
HOH
12
1_555
A
HOH
1167
J
HOH
12
1_555
A
HOH
1231
J
HOH
12
1_555
A
HOH
1243
J
HOH
12
1_555
A
HOH
1271
J
HOH
12
1_555
C
DG
4
C
DG
4
12
4_555
C
DT
5
C
DT
5
12
4_555
B
SER
16
B
SER
17
21
1_555
B
SER
17
B
SER
18
21
1_555
B
GLY
18
B
GLY
19
21
1_555
B
SER
19
B
SER
20
21
1_555
B
GLY
20
B
GLY
21
21
1_555
B
LYS
21
B
LYS
22
21
1_555
B
SER
22
B
SER
23
21
1_555
B
THR
23
B
THR
24
21
1_555
B
ASN
38
B
ASN
39
21
1_555
B
ARG
116
B
ARG
117
21
1_555
B
ARG
120
B
ARG
121
21
1_555
B
ARG
123
B
ARG
124
21
1_555
B
MG
1002
I
MG
21
1_555
B
HOH
1101
K
HOH
21
1_555
B
HOH
1102
K
HOH
21
1_555
B
HOH
1103
K
HOH
21
1_555
B
HOH
1149
K
HOH
21
1_555
B
HOH
1169
K
HOH
21
1_555
B
HOH
1197
K
HOH
21
1_555
B
HOH
1200
K
HOH
21
1_555
D
DC
1
D
DC
1
21
1_555
B
SER
22
B
SER
23
5
1_555
B
GTP
1001
H
GTP
5
1_555
B
HOH
1101
K
HOH
5
1_555
B
HOH
1102
K
HOH
5
1_555
B
HOH
1103
K
HOH
5
1_555
19
P 21 21 21