0.014972
0.000000
0.000000
0.000000
0.014309
0.000000
0.000000
0.000000
0.012625
0.00000
0.00000
0.00000
Simanshu, D.K.
Patel, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
66.793
69.885
79.209
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N2 O8 P
308.182
y
2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
I -1
126.904
IODIDE ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
O
N
147
N
P
N
148
N
O
N
149
N
O
N
150
N
O
N
151
N
C
N
152
R
C
N
153
N
O
N
154
S
C
N
155
N
O
N
156
N
C
N
157
R
C
N
158
N
N
N
159
N
C
N
160
N
O
N
161
N
N
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
C
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
N
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
O
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
N
N
219
N
C
N
220
N
C
N
221
N
O
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
Y
233
N
C
Y
234
N
N
Y
235
N
C
Y
236
N
C
Y
237
N
N
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
S
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
I
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
N
N
298
S
C
N
299
N
C
N
300
N
O
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
N
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
S
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
NA
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
N
N
367
S
C
N
368
N
C
N
369
N
O
N
370
N
C
N
371
N
C
N
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
O
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
R
C
N
402
N
O
N
403
N
C
N
404
N
O
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
Y
419
N
C
Y
420
N
C
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
N
425
N
O
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
O
N
439
N
P
N
440
N
O
N
441
N
O
N
442
N
O
N
443
N
C
N
444
R
C
N
445
N
O
N
446
S
C
N
447
N
O
N
448
R
C
N
449
N
O
N
450
R
C
N
451
N
N
N
452
N
C
N
453
N
O
N
454
N
N
N
455
N
C
N
456
N
O
N
457
N
C
N
458
N
C
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
N
N
473
S
C
N
474
N
C
N
475
N
O
N
476
N
C
N
477
N
C
N
478
N
C
N
479
N
O
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
Y
236
N
sing
Y
237
N
doub
Y
238
N
doub
N
239
N
sing
Y
240
N
sing
N
241
N
sing
Y
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
Y
344
N
doub
Y
345
N
sing
Y
346
N
sing
N
347
N
sing
Y
348
N
doub
N
349
N
sing
Y
350
N
doub
N
351
N
sing
Y
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
doub
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
Y
413
N
doub
Y
414
N
sing
Y
415
N
sing
N
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
doub
N
420
N
sing
Y
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
doub
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
doub
N
457
N
sing
N
458
N
doub
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
doub
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
US
Mol.Cell
MOCEFL
2168
1097-2765
52
447
458
10.1016/j.molcel.2013.09.006
24120662
Structural Basis of mRNA Recognition and Cleavage by Toxin MazF and Its Regulation by Antitoxin MazE in Bacillus subtilis.
2013
10.2210/pdb4mdx/pdb
pdb_00004mdx
100
1
CCD
2012-12-07
ADSC QUANTUM 315
Si(220)
SINGLE WAVELENGTH
M
x-ray
1
0.9792
1.0
24-ID-E
APS
0.9792
SYNCHROTRON
APS BEAMLINE 24-ID-E
13081.020
mRNA interferase EndoA
3.1.-.-
2
man
polymer
2785.712
RNA, mRNA
1
syn
polymer
126.904
IODIDE ION
6
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
354
nat
water
Endoribonuclease EndoA, Toxin EndoA, mRNA interferase MazF-bs, MazF-bs
no
no
SMIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQ
IRTIDKQRLTDKITHLDDEMMDKVDEALQISLALIDF
SMIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQ
IRTIDKQRLTDKITHLDDEMMDKVDEALQISLALIDF
A,B
polypeptide(L)
no
no
UU(DU)ACAUAA
UUUACAUAA
C
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
168
sample
BSU04660, mazF, ndoA, ydcE
224308
Bacillus subtilis subsp. subtilis
469008
Escherichia coli
BL21(DE3)pLysS
Plasmid
pET-SUMO
1
3.19
61.48
VAPOR DIFFUSION, HANGING DROP
8.0
0.2 M sodium iodide, 20% w/v PEG 3350, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Refinement description
Data collection
Database references
Derived calculations
1
0
2013-10-23
1
1
2013-10-30
1
2
2013-11-27
1
3
2017-11-15
1
4
2024-02-28
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-08-23
REL
REL
IOD
IODIDE ION
NA
SODIUM ION
HOH
water
Chemically Synthesized ssRNA
sample
IOD
1
3
IOD
IOD
201
A
IOD
3
3
IOD
IOD
202
A
IOD
5
3
IOD
IOD
203
A
NA
1
4
NA
NA
204
A
IOD
2
3
IOD
IOD
201
B
IOD
4
3
IOD
IOD
202
B
IOD
6
3
IOD
IOD
101
C
HOH
1
5
HOH
HOH
301
A
HOH
2
5
HOH
HOH
302
A
HOH
4
5
HOH
HOH
303
A
HOH
6
5
HOH
HOH
304
A
HOH
11
5
HOH
HOH
305
A
HOH
12
5
HOH
HOH
306
A
HOH
18
5
HOH
HOH
307
A
HOH
20
5
HOH
HOH
308
A
HOH
24
5
HOH
HOH
309
A
HOH
25
5
HOH
HOH
310
A
HOH
26
5
HOH
HOH
311
A
HOH
31
5
HOH
HOH
312
A
HOH
33
5
HOH
HOH
313
A
HOH
35
5
HOH
HOH
314
A
HOH
36
5
HOH
HOH
315
A
HOH
38
5
HOH
HOH
316
A
HOH
43
5
HOH
HOH
317
A
HOH
44
5
HOH
HOH
318
A
HOH
47
5
HOH
HOH
319
A
HOH
49
5
HOH
HOH
320
A
HOH
53
5
HOH
HOH
321
A
HOH
54
5
HOH
HOH
322
A
HOH
55
5
HOH
HOH
323
A
HOH
56
5
HOH
HOH
324
A
HOH
57
5
HOH
HOH
325
A
HOH
60
5
HOH
HOH
326
A
HOH
66
5
HOH
HOH
327
A
HOH
72
5
HOH
HOH
328
A
HOH
74
5
HOH
HOH
329
A
HOH
76
5
HOH
HOH
330
A
HOH
77
5
HOH
HOH
331
A
HOH
78
5
HOH
HOH
332
A
HOH
79
5
HOH
HOH
333
A
HOH
81
5
HOH
HOH
334
A
HOH
88
5
HOH
HOH
335
A
HOH
93
5
HOH
HOH
336
A
HOH
94
5
HOH
HOH
337
A
HOH
96
5
HOH
HOH
338
A
HOH
100
5
HOH
HOH
339
A
HOH
101
5
HOH
HOH
340
A
HOH
103
5
HOH
HOH
341
A
HOH
105
5
HOH
HOH
342
A
HOH
106
5
HOH
HOH
343
A
HOH
109
5
HOH
HOH
344
A
HOH
110
5
HOH
HOH
345
A
HOH
118
5
HOH
HOH
346
A
HOH
119
5
HOH
HOH
347
A
HOH
120
5
HOH
HOH
348
A
HOH
123
5
HOH
HOH
349
A
HOH
125
5
HOH
HOH
350
A
HOH
126
5
HOH
HOH
351
A
HOH
127
5
HOH
HOH
352
A
HOH
130
5
HOH
HOH
353
A
HOH
132
5
HOH
HOH
354
A
HOH
133
5
HOH
HOH
355
A
HOH
134
5
HOH
HOH
356
A
HOH
136
5
HOH
HOH
357
A
HOH
137
5
HOH
HOH
358
A
HOH
142
5
HOH
HOH
359
A
HOH
144
5
HOH
HOH
360
A
HOH
149
5
HOH
HOH
361
A
HOH
150
5
HOH
HOH
362
A
HOH
151
5
HOH
HOH
363
A
HOH
154
5
HOH
HOH
364
A
HOH
156
5
HOH
HOH
365
A
HOH
157
5
HOH
HOH
366
A
HOH
158
5
HOH
HOH
367
A
HOH
161
5
HOH
HOH
368
A
HOH
162
5
HOH
HOH
369
A
HOH
166
5
HOH
HOH
370
A
HOH
169
5
HOH
HOH
371
A
HOH
172
5
HOH
HOH
372
A
HOH
176
5
HOH
HOH
373
A
HOH
177
5
HOH
HOH
374
A
HOH
178
5
HOH
HOH
375
A
HOH
179
5
HOH
HOH
376
A
HOH
181
5
HOH
HOH
377
A
HOH
183
5
HOH
HOH
378
A
HOH
191
5
HOH
HOH
379
A
HOH
196
5
HOH
HOH
380
A
HOH
197
5
HOH
HOH
381
A
HOH
198
5
HOH
HOH
382
A
HOH
199
5
HOH
HOH
383
A
HOH
200
5
HOH
HOH
384
A
HOH
201
5
HOH
HOH
385
A
HOH
202
5
HOH
HOH
386
A
HOH
203
5
HOH
HOH
387
A
HOH
204
5
HOH
HOH
388
A
HOH
210
5
HOH
HOH
389
A
HOH
212
5
HOH
HOH
390
A
HOH
216
5
HOH
HOH
391
A
HOH
226
5
HOH
HOH
392
A
HOH
230
5
HOH
HOH
393
A
HOH
236
5
HOH
HOH
394
A
HOH
237
5
HOH
HOH
395
A
HOH
238
5
HOH
HOH
396
A
HOH
239
5
HOH
HOH
397
A
HOH
241
5
HOH
HOH
398
A
HOH
243
5
HOH
HOH
399
A
HOH
245
5
HOH
HOH
400
A
HOH
248
5
HOH
HOH
401
A
HOH
251
5
HOH
HOH
402
A
HOH
253
5
HOH
HOH
403
A
HOH
256
5
HOH
HOH
404
A
HOH
258
5
HOH
HOH
405
A
HOH
260
5
HOH
HOH
406
A
HOH
263
5
HOH
HOH
407
A
HOH
264
5
HOH
HOH
408
A
HOH
267
5
HOH
HOH
409
A
HOH
270
5
HOH
HOH
410
A
HOH
273
5
HOH
HOH
411
A
HOH
274
5
HOH
HOH
412
A
HOH
278
5
HOH
HOH
413
A
HOH
280
5
HOH
HOH
414
A
HOH
284
5
HOH
HOH
415
A
HOH
285
5
HOH
HOH
416
A
HOH
286
5
HOH
HOH
417
A
HOH
287
5
HOH
HOH
418
A
HOH
288
5
HOH
HOH
419
A
HOH
289
5
HOH
HOH
420
A
HOH
291
5
HOH
HOH
421
A
HOH
294
5
HOH
HOH
422
A
HOH
296
5
HOH
HOH
423
A
HOH
297
5
HOH
HOH
424
A
HOH
298
5
HOH
HOH
425
A
HOH
299
5
HOH
HOH
426
A
HOH
301
5
HOH
HOH
427
A
HOH
302
5
HOH
HOH
428
A
HOH
303
5
HOH
HOH
429
A
HOH
311
5
HOH
HOH
430
A
HOH
312
5
HOH
HOH
431
A
HOH
316
5
HOH
HOH
432
A
HOH
317
5
HOH
HOH
433
A
HOH
318
5
HOH
HOH
434
A
HOH
322
5
HOH
HOH
435
A
HOH
325
5
HOH
HOH
436
A
HOH
326
5
HOH
HOH
437
A
HOH
327
5
HOH
HOH
438
A
HOH
329
5
HOH
HOH
439
A
HOH
330
5
HOH
HOH
440
A
HOH
332
5
HOH
HOH
441
A
HOH
333
5
HOH
HOH
442
A
HOH
335
5
HOH
HOH
443
A
HOH
336
5
HOH
HOH
444
A
HOH
338
5
HOH
HOH
445
A
HOH
346
5
HOH
HOH
446
A
HOH
347
5
HOH
HOH
447
A
HOH
348
5
HOH
HOH
448
A
HOH
350
5
HOH
HOH
449
A
HOH
353
5
HOH
HOH
450
A
HOH
3
5
HOH
HOH
301
B
HOH
5
5
HOH
HOH
302
B
HOH
7
5
HOH
HOH
303
B
HOH
8
5
HOH
HOH
304
B
HOH
9
5
HOH
HOH
305
B
HOH
10
5
HOH
HOH
306
B
HOH
14
5
HOH
HOH
307
B
HOH
15
5
HOH
HOH
308
B
HOH
16
5
HOH
HOH
309
B
HOH
17
5
HOH
HOH
310
B
HOH
19
5
HOH
HOH
311
B
HOH
21
5
HOH
HOH
312
B
HOH
22
5
HOH
HOH
313
B
HOH
23
5
HOH
HOH
314
B
HOH
27
5
HOH
HOH
315
B
HOH
28
5
HOH
HOH
316
B
HOH
29
5
HOH
HOH
317
B
HOH
30
5
HOH
HOH
318
B
HOH
34
5
HOH
HOH
319
B
HOH
39
5
HOH
HOH
320
B
HOH
41
5
HOH
HOH
321
B
HOH
42
5
HOH
HOH
322
B
HOH
45
5
HOH
HOH
323
B
HOH
46
5
HOH
HOH
324
B
HOH
50
5
HOH
HOH
325
B
HOH
58
5
HOH
HOH
326
B
HOH
59
5
HOH
HOH
327
B
HOH
61
5
HOH
HOH
328
B
HOH
62
5
HOH
HOH
329
B
HOH
64
5
HOH
HOH
330
B
HOH
65
5
HOH
HOH
331
B
HOH
67
5
HOH
HOH
332
B
HOH
68
5
HOH
HOH
333
B
HOH
69
5
HOH
HOH
334
B
HOH
70
5
HOH
HOH
335
B
HOH
71
5
HOH
HOH
336
B
HOH
73
5
HOH
HOH
337
B
HOH
75
5
HOH
HOH
338
B
HOH
80
5
HOH
HOH
339
B
HOH
84
5
HOH
HOH
340
B
HOH
85
5
HOH
HOH
341
B
HOH
86
5
HOH
HOH
342
B
HOH
87
5
HOH
HOH
343
B
HOH
90
5
HOH
HOH
344
B
HOH
91
5
HOH
HOH
345
B
HOH
95
5
HOH
HOH
346
B
HOH
97
5
HOH
HOH
347
B
HOH
98
5
HOH
HOH
348
B
HOH
104
5
HOH
HOH
349
B
HOH
107
5
HOH
HOH
350
B
HOH
108
5
HOH
HOH
351
B
HOH
112
5
HOH
HOH
352
B
HOH
114
5
HOH
HOH
353
B
HOH
115
5
HOH
HOH
354
B
HOH
117
5
HOH
HOH
355
B
HOH
121
5
HOH
HOH
356
B
HOH
124
5
HOH
HOH
357
B
HOH
128
5
HOH
HOH
358
B
HOH
129
5
HOH
HOH
359
B
HOH
131
5
HOH
HOH
360
B
HOH
140
5
HOH
HOH
361
B
HOH
143
5
HOH
HOH
362
B
HOH
145
5
HOH
HOH
363
B
HOH
146
5
HOH
HOH
364
B
HOH
147
5
HOH
HOH
365
B
HOH
148
5
HOH
HOH
366
B
HOH
152
5
HOH
HOH
367
B
HOH
155
5
HOH
HOH
368
B
HOH
160
5
HOH
HOH
369
B
HOH
163
5
HOH
HOH
370
B
HOH
164
5
HOH
HOH
371
B
HOH
167
5
HOH
HOH
372
B
HOH
168
5
HOH
HOH
373
B
HOH
170
5
HOH
HOH
374
B
HOH
173
5
HOH
HOH
375
B
HOH
175
5
HOH
HOH
376
B
HOH
184
5
HOH
HOH
377
B
HOH
185
5
HOH
HOH
378
B
HOH
186
5
HOH
HOH
379
B
HOH
189
5
HOH
HOH
380
B
HOH
190
5
HOH
HOH
381
B
HOH
193
5
HOH
HOH
382
B
HOH
195
5
HOH
HOH
383
B
HOH
205
5
HOH
HOH
384
B
HOH
206
5
HOH
HOH
385
B
HOH
207
5
HOH
HOH
386
B
HOH
208
5
HOH
HOH
387
B
HOH
213
5
HOH
HOH
388
B
HOH
214
5
HOH
HOH
389
B
HOH
215
5
HOH
HOH
390
B
HOH
217
5
HOH
HOH
391
B
HOH
218
5
HOH
HOH
392
B
HOH
219
5
HOH
HOH
393
B
HOH
220
5
HOH
HOH
394
B
HOH
221
5
HOH
HOH
395
B
HOH
222
5
HOH
HOH
396
B
HOH
224
5
HOH
HOH
397
B
HOH
228
5
HOH
HOH
398
B
HOH
229
5
HOH
HOH
399
B
HOH
231
5
HOH
HOH
400
B
HOH
233
5
HOH
HOH
401
B
HOH
234
5
HOH
HOH
402
B
HOH
242
5
HOH
HOH
403
B
HOH
244
5
HOH
HOH
404
B
HOH
247
5
HOH
HOH
405
B
HOH
250
5
HOH
HOH
406
B
HOH
252
5
HOH
HOH
407
B
HOH
254
5
HOH
HOH
408
B
HOH
257
5
HOH
HOH
409
B
HOH
262
5
HOH
HOH
410
B
HOH
265
5
HOH
HOH
411
B
HOH
266
5
HOH
HOH
412
B
HOH
271
5
HOH
HOH
413
B
HOH
272
5
HOH
HOH
414
B
HOH
275
5
HOH
HOH
415
B
HOH
276
5
HOH
HOH
416
B
HOH
277
5
HOH
HOH
417
B
HOH
279
5
HOH
HOH
418
B
HOH
281
5
HOH
HOH
419
B
HOH
282
5
HOH
HOH
420
B
HOH
283
5
HOH
HOH
421
B
HOH
292
5
HOH
HOH
422
B
HOH
293
5
HOH
HOH
423
B
HOH
295
5
HOH
HOH
424
B
HOH
300
5
HOH
HOH
425
B
HOH
304
5
HOH
HOH
426
B
HOH
305
5
HOH
HOH
427
B
HOH
306
5
HOH
HOH
428
B
HOH
308
5
HOH
HOH
429
B
HOH
309
5
HOH
HOH
430
B
HOH
313
5
HOH
HOH
431
B
HOH
314
5
HOH
HOH
432
B
HOH
315
5
HOH
HOH
433
B
HOH
319
5
HOH
HOH
434
B
HOH
320
5
HOH
HOH
435
B
HOH
321
5
HOH
HOH
436
B
HOH
323
5
HOH
HOH
437
B
HOH
328
5
HOH
HOH
438
B
HOH
331
5
HOH
HOH
439
B
HOH
334
5
HOH
HOH
440
B
HOH
337
5
HOH
HOH
441
B
HOH
340
5
HOH
HOH
442
B
HOH
343
5
HOH
HOH
443
B
HOH
344
5
HOH
HOH
444
B
HOH
345
5
HOH
HOH
445
B
HOH
349
5
HOH
HOH
446
B
HOH
351
5
HOH
HOH
447
B
HOH
352
5
HOH
HOH
448
B
HOH
354
5
HOH
HOH
449
B
HOH
13
5
HOH
HOH
201
C
HOH
32
5
HOH
HOH
202
C
HOH
37
5
HOH
HOH
203
C
HOH
40
5
HOH
HOH
204
C
HOH
48
5
HOH
HOH
205
C
HOH
51
5
HOH
HOH
206
C
HOH
52
5
HOH
HOH
207
C
HOH
63
5
HOH
HOH
208
C
HOH
82
5
HOH
HOH
209
C
HOH
83
5
HOH
HOH
210
C
HOH
89
5
HOH
HOH
211
C
HOH
92
5
HOH
HOH
212
C
HOH
99
5
HOH
HOH
213
C
HOH
102
5
HOH
HOH
214
C
HOH
111
5
HOH
HOH
215
C
HOH
113
5
HOH
HOH
216
C
HOH
116
5
HOH
HOH
217
C
HOH
122
5
HOH
HOH
218
C
HOH
135
5
HOH
HOH
219
C
HOH
138
5
HOH
HOH
220
C
HOH
139
5
HOH
HOH
221
C
HOH
141
5
HOH
HOH
222
C
HOH
153
5
HOH
HOH
223
C
HOH
159
5
HOH
HOH
224
C
HOH
165
5
HOH
HOH
225
C
HOH
171
5
HOH
HOH
226
C
HOH
174
5
HOH
HOH
227
C
HOH
180
5
HOH
HOH
228
C
HOH
182
5
HOH
HOH
229
C
HOH
187
5
HOH
HOH
230
C
HOH
188
5
HOH
HOH
231
C
HOH
192
5
HOH
HOH
232
C
HOH
194
5
HOH
HOH
233
C
HOH
209
5
HOH
HOH
234
C
HOH
211
5
HOH
HOH
235
C
HOH
223
5
HOH
HOH
236
C
HOH
225
5
HOH
HOH
237
C
HOH
227
5
HOH
HOH
238
C
HOH
232
5
HOH
HOH
239
C
HOH
235
5
HOH
HOH
240
C
HOH
240
5
HOH
HOH
241
C
HOH
246
5
HOH
HOH
242
C
HOH
249
5
HOH
HOH
243
C
HOH
255
5
HOH
HOH
244
C
HOH
259
5
HOH
HOH
245
C
HOH
261
5
HOH
HOH
246
C
HOH
268
5
HOH
HOH
247
C
HOH
269
5
HOH
HOH
248
C
HOH
290
5
HOH
HOH
249
C
HOH
307
5
HOH
HOH
250
C
HOH
310
5
HOH
HOH
251
C
HOH
324
5
HOH
HOH
252
C
HOH
339
5
HOH
HOH
253
C
HOH
341
5
HOH
HOH
254
C
HOH
342
5
HOH
HOH
255
C
2.500
2.500
48.420
48.420
Phaser MODE: MR_AUTO
SER
0
n
1
SER
0
A
MET
1
n
2
MET
1
A
ILE
2
n
3
ILE
2
A
VAL
3
n
4
VAL
3
A
LYS
4
n
5
LYS
4
A
ARG
5
n
6
ARG
5
A
GLY
6
n
7
GLY
6
A
ASP
7
n
8
ASP
7
A
VAL
8
n
9
VAL
8
A
TYR
9
n
10
TYR
9
A
PHE
10
n
11
PHE
10
A
ALA
11
n
12
ALA
11
A
ASP
12
n
13
ASP
12
A
LEU
13
n
14
LEU
13
A
SER
14
n
15
SER
14
A
PRO
15
n
16
PRO
15
A
VAL
16
n
17
VAL
16
A
VAL
17
n
18
VAL
17
A
GLY
18
n
19
GLY
18
A
SER
19
n
20
SER
19
A
GLU
20
n
21
GLU
20
A
GLN
21
n
22
GLN
21
A
GLY
22
n
23
GLY
22
A
GLY
23
n
24
GLY
23
A
VAL
24
n
25
VAL
24
A
ARG
25
n
26
ARG
25
A
PRO
26
n
27
PRO
26
A
VAL
27
n
28
VAL
27
A
LEU
28
n
29
LEU
28
A
VAL
29
n
30
VAL
29
A
ILE
30
n
31
ILE
30
A
GLN
31
n
32
GLN
31
A
ASN
32
n
33
ASN
32
A
ASP
33
n
34
ASP
33
A
ILE
34
n
35
ILE
34
A
GLY
35
n
36
GLY
35
A
ASN
36
n
37
ASN
36
A
ARG
37
n
38
ARG
37
A
PHE
38
n
39
PHE
38
A
SER
39
n
40
SER
39
A
PRO
40
n
41
PRO
40
A
THR
41
n
42
THR
41
A
ALA
42
n
43
ALA
42
A
ILE
43
n
44
ILE
43
A
VAL
44
n
45
VAL
44
A
ALA
45
n
46
ALA
45
A
ALA
46
n
47
ALA
46
A
ILE
47
n
48
ILE
47
A
THR
48
n
49
THR
48
A
ALA
49
n
50
ALA
49
A
GLN
50
n
51
GLN
50
A
ILE
51
n
52
ILE
51
A
GLN
52
n
53
GLN
52
A
LYS
53
n
54
LYS
53
A
ALA
54
n
55
ALA
54
A
LYS
55
n
56
LYS
55
A
LEU
56
n
57
LEU
56
A
PRO
57
n
58
PRO
57
A
THR
58
n
59
THR
58
A
HIS
59
n
60
HIS
59
A
VAL
60
n
61
VAL
60
A
GLU
61
n
62
GLU
61
A
ILE
62
n
63
ILE
62
A
ASP
63
n
64
ASP
63
A
ALA
64
n
65
ALA
64
A
LYS
65
n
66
LYS
65
A
ARG
66
n
67
ARG
66
A
TYR
67
n
68
TYR
67
A
GLY
68
n
69
GLY
68
A
PHE
69
n
70
PHE
69
A
GLU
70
n
71
GLU
70
A
ARG
71
n
72
ARG
71
A
ASP
72
n
73
ASP
72
A
SER
73
n
74
SER
73
A
VAL
74
n
75
VAL
74
A
ILE
75
n
76
ILE
75
A
LEU
76
n
77
LEU
76
A
LEU
77
n
78
LEU
77
A
GLU
78
n
79
GLU
78
A
GLN
79
n
80
GLN
79
A
ILE
80
n
81
ILE
80
A
ARG
81
n
82
ARG
81
A
THR
82
n
83
THR
82
A
ILE
83
n
84
ILE
83
A
ASP
84
n
85
ASP
84
A
LYS
85
n
86
LYS
85
A
GLN
86
n
87
GLN
86
A
ARG
87
n
88
ARG
87
A
LEU
88
n
89
LEU
88
A
THR
89
n
90
THR
89
A
ASP
90
n
91
ASP
90
A
LYS
91
n
92
LYS
91
A
ILE
92
n
93
ILE
92
A
THR
93
n
94
THR
93
A
HIS
94
n
95
HIS
94
A
LEU
95
n
96
LEU
95
A
ASP
96
n
97
ASP
96
A
ASP
97
n
98
ASP
97
A
GLU
98
n
99
GLU
98
A
MET
99
n
100
MET
99
A
MET
100
n
101
MET
100
A
ASP
101
n
102
ASP
101
A
LYS
102
n
103
LYS
102
A
VAL
103
n
104
VAL
103
A
ASP
104
n
105
ASP
104
A
GLU
105
n
106
GLU
105
A
ALA
106
n
107
ALA
106
A
LEU
107
n
108
LEU
107
A
GLN
108
n
109
GLN
108
A
ILE
109
n
110
ILE
109
A
SER
110
n
111
SER
110
A
LEU
111
n
112
LEU
111
A
ALA
112
n
113
ALA
112
A
LEU
113
n
114
LEU
113
A
ILE
114
n
115
ILE
114
A
n
116
115
A
n
117
116
A
SER
0
n
1
SER
0
B
MET
1
n
2
MET
1
B
ILE
2
n
3
ILE
2
B
VAL
3
n
4
VAL
3
B
LYS
4
n
5
LYS
4
B
ARG
5
n
6
ARG
5
B
GLY
6
n
7
GLY
6
B
ASP
7
n
8
ASP
7
B
VAL
8
n
9
VAL
8
B
TYR
9
n
10
TYR
9
B
PHE
10
n
11
PHE
10
B
ALA
11
n
12
ALA
11
B
ASP
12
n
13
ASP
12
B
LEU
13
n
14
LEU
13
B
SER
14
n
15
SER
14
B
PRO
15
n
16
PRO
15
B
VAL
16
n
17
VAL
16
B
VAL
17
n
18
VAL
17
B
GLY
18
n
19
GLY
18
B
SER
19
n
20
SER
19
B
GLU
20
n
21
GLU
20
B
GLN
21
n
22
GLN
21
B
GLY
22
n
23
GLY
22
B
GLY
23
n
24
GLY
23
B
VAL
24
n
25
VAL
24
B
ARG
25
n
26
ARG
25
B
PRO
26
n
27
PRO
26
B
VAL
27
n
28
VAL
27
B
LEU
28
n
29
LEU
28
B
VAL
29
n
30
VAL
29
B
ILE
30
n
31
ILE
30
B
GLN
31
n
32
GLN
31
B
ASN
32
n
33
ASN
32
B
ASP
33
n
34
ASP
33
B
ILE
34
n
35
ILE
34
B
GLY
35
n
36
GLY
35
B
ASN
36
n
37
ASN
36
B
ARG
37
n
38
ARG
37
B
PHE
38
n
39
PHE
38
B
SER
39
n
40
SER
39
B
PRO
40
n
41
PRO
40
B
THR
41
n
42
THR
41
B
ALA
42
n
43
ALA
42
B
ILE
43
n
44
ILE
43
B
VAL
44
n
45
VAL
44
B
ALA
45
n
46
ALA
45
B
ALA
46
n
47
ALA
46
B
ILE
47
n
48
ILE
47
B
THR
48
n
49
THR
48
B
ALA
49
n
50
ALA
49
B
GLN
50
n
51
GLN
50
B
ILE
51
n
52
ILE
51
B
GLN
52
n
53
GLN
52
B
LYS
53
n
54
LYS
53
B
ALA
54
n
55
ALA
54
B
LYS
55
n
56
LYS
55
B
LEU
56
n
57
LEU
56
B
PRO
57
n
58
PRO
57
B
THR
58
n
59
THR
58
B
HIS
59
n
60
HIS
59
B
VAL
60
n
61
VAL
60
B
GLU
61
n
62
GLU
61
B
ILE
62
n
63
ILE
62
B
ASP
63
n
64
ASP
63
B
ALA
64
n
65
ALA
64
B
LYS
65
n
66
LYS
65
B
ARG
66
n
67
ARG
66
B
TYR
67
n
68
TYR
67
B
GLY
68
n
69
GLY
68
B
PHE
69
n
70
PHE
69
B
GLU
70
n
71
GLU
70
B
ARG
71
n
72
ARG
71
B
ASP
72
n
73
ASP
72
B
SER
73
n
74
SER
73
B
VAL
74
n
75
VAL
74
B
ILE
75
n
76
ILE
75
B
LEU
76
n
77
LEU
76
B
LEU
77
n
78
LEU
77
B
GLU
78
n
79
GLU
78
B
GLN
79
n
80
GLN
79
B
ILE
80
n
81
ILE
80
B
ARG
81
n
82
ARG
81
B
THR
82
n
83
THR
82
B
ILE
83
n
84
ILE
83
B
ASP
84
n
85
ASP
84
B
LYS
85
n
86
LYS
85
B
GLN
86
n
87
GLN
86
B
ARG
87
n
88
ARG
87
B
LEU
88
n
89
LEU
88
B
THR
89
n
90
THR
89
B
ASP
90
n
91
ASP
90
B
LYS
91
n
92
LYS
91
B
ILE
92
n
93
ILE
92
B
THR
93
n
94
THR
93
B
HIS
94
n
95
HIS
94
B
LEU
95
n
96
LEU
95
B
ASP
96
n
97
ASP
96
B
ASP
97
n
98
ASP
97
B
GLU
98
n
99
GLU
98
B
MET
99
n
100
MET
99
B
MET
100
n
101
MET
100
B
ASP
101
n
102
ASP
101
B
LYS
102
n
103
LYS
102
B
VAL
103
n
104
VAL
103
B
ASP
104
n
105
ASP
104
B
GLU
105
n
106
GLU
105
B
ALA
106
n
107
ALA
106
B
LEU
107
n
108
LEU
107
B
GLN
108
n
109
GLN
108
B
ILE
109
n
110
ILE
109
B
SER
110
n
111
SER
110
B
LEU
111
n
112
LEU
111
B
ALA
112
n
113
ALA
112
B
LEU
113
n
114
LEU
113
B
ILE
114
n
115
ILE
114
B
n
116
115
B
n
117
116
B
U
1
n
1
U
1
C
U
2
n
2
U
2
C
DU
3
n
3
DU
3
C
A
4
n
4
A
4
C
C
5
n
5
C
5
C
A
6
n
6
A
6
C
U
7
n
7
U
7
C
A
8
n
8
A
8
C
A
9
n
9
A
9
C
1.2205
-0.4040
0.2726
1.2066
-0.2526
0.8395
0.0002
-0.0363
-0.0500
0.0191
0.0078
0.0064
0.0258
-0.0027
-0.0009
0.0608
-0.0089
0.0033
0.0584
0.0022
0.0584
refined
0.9071
11.3641
11.6708
X-RAY DIFFRACTION
A
0
A
114
X-RAY DIFFRACTION
1
all
B
0
B
114
X-RAY DIFFRACTION
1
all
C
1
C
9
X-RAY DIFFRACTION
1
all
A
1
C
101
X-RAY DIFFRACTION
1
all
A
1
A
204
X-RAY DIFFRACTION
1
all
A
1
B
449
X-RAY DIFFRACTION
1
all
author_and_software_defined_assembly
PISA
3
trimeric
5680
-28
11080
A
GLN
86
A
O
GLN
87
1_555
A
NA
204
G
NA
NA
1_555
A
LEU
88
A
O
LEU
89
1_555
100.3
A
GLN
86
A
O
GLN
87
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
309
K
O
HOH
1_555
100.3
A
LEU
88
A
O
LEU
89
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
309
K
O
HOH
1_555
75.5
A
GLN
86
A
O
GLN
87
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
338
K
O
HOH
1_555
77.0
A
LEU
88
A
O
LEU
89
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
338
K
O
HOH
1_555
99.7
A
HOH
309
K
O
HOH
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
338
K
O
HOH
1_555
174.1
A
GLN
86
A
O
GLN
87
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
355
K
O
HOH
1_555
175.2
A
LEU
88
A
O
LEU
89
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
355
K
O
HOH
1_555
80.9
A
HOH
309
K
O
HOH
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
355
K
O
HOH
1_555
84.6
A
HOH
338
K
O
HOH
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
355
K
O
HOH
1_555
98.2
A
GLN
86
A
O
GLN
87
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
428
K
O
HOH
1_555
85.2
A
LEU
88
A
O
LEU
89
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
428
K
O
HOH
1_555
169.2
A
HOH
309
K
O
HOH
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
428
K
O
HOH
1_555
94.5
A
HOH
338
K
O
HOH
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
428
K
O
HOH
1_555
90.5
A
HOH
355
K
O
HOH
1_555
A
NA
204
G
NA
NA
1_555
A
HOH
428
K
O
HOH
1_555
94.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
62
A
N
ILE
63
A
O
SER
73
A
O
SER
74
A
O
LEU
76
A
O
LEU
77
A
N
ALA
46
A
N
ALA
47
A
O
ALA
45
A
O
ALA
46
A
N
LEU
28
A
N
LEU
29
A
O
VAL
29
A
O
VAL
30
A
N
ASP
7
A
N
ASP
8
A
N
VAL
8
A
N
VAL
9
A
O
ILE
92
A
O
ILE
93
B
N
VAL
60
B
N
VAL
61
B
O
ILE
75
B
O
ILE
76
B
O
LEU
76
B
O
LEU
77
B
N
ALA
46
B
N
ALA
47
B
O
ALA
45
B
O
ALA
46
B
N
LEU
28
B
N
LEU
29
B
O
VAL
29
B
O
VAL
30
B
N
ASP
7
B
N
ASP
8
B
N
VAL
8
B
N
VAL
9
B
O
ILE
92
B
O
ILE
93
1
A
ASP
115
A
ASP
116
1
Y
1
A
PHE
116
A
PHE
117
1
Y
1
B
ASP
115
B
ASP
116
1
Y
1
B
PHE
116
B
PHE
117
1
Y
1
A
THR
89
-114.12
-97.70
1
B
THR
89
-110.82
-99.32
52.760
18.2771
5.660
0.1776
0.1644
0.1648
1.5000
24.5540
1998
59959
3.3300
99.9000
1.000
0.000
0.1400
Random
1
1.360
MOLECULAR REPLACEMENT
16.6700
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
1.5000
24.5540
354
2341
7
184
1796
0.006
2084
1.088
2871
0.071
356
0.005
338
13.722
845
0.2945
0.2332
1.5376
135
4082
4217
14
99.0000
0.2085
0.2070
1.5792
142
4084
4226
14
100.0000
0.2384
0.1922
1.6257
144
4110
4254
14
100.0000
0.2162
0.1845
1.6781
143
4073
4216
14
100.0000
0.2003
0.1794
1.7381
143
4094
4237
14
100.0000
0.1738
0.1649
1.8077
142
4105
4247
14
100.0000
0.1807
0.1667
1.8899
138
4141
4279
14
100.0000
0.1711
0.1565
1.9895
144
4103
4247
14
100.0000
0.1986
0.1546
2.1141
135
4120
4255
14
100.0000
0.1720
0.1579
2.2772
144
4130
4274
14
100.0000
0.1785
0.1652
2.5062
142
4162
4304
14
100.0000
0.1624
0.1669
2.8683
144
4178
4322
14
100.0000
0.1470
0.1586
3.6120
148
4195
4343
14
100.0000
0.1729
0.1517
24.5575
154
4384
4538
14
100.0000
13.500
1.500
25.000
4MDX
60026
0.082
1.171
1
7.100
4.700
99.900
0.531
1.500
1.550
5947
0.602
1
4.700
100.000
0.396
1.550
1.620
5911
0.592
1
4.700
100.000
0.311
1.620
1.690
5920
0.627
1
4.700
100.000
0.209
1.690
1.780
5927
0.662
1
4.700
100.000
0.159
1.780
1.890
6000
0.729
1
4.700
100.000
0.117
1.890
2.040
5957
1.005
1
4.700
100.000
0.103
2.040
2.240
5979
1.528
1
4.700
100.000
0.093
2.240
2.560
6016
1.883
1
4.600
100.000
0.063
2.560
3.230
6061
1.800
1
4.500
99.800
0.047
3.230
25.000
6308
2.274
1
4.600
99.700
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Tue Oct 18 19:46:39 2011 (svn )
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.3.0
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.1_1168
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
HKL-2000
Crystal structure of Bacillus subtilis MazF in complex with RNA
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
3
N
N
3
N
N
3
N
N
5
N
N
5
N
N
5
N
N
A
ASN
32
A
ASN
33
HELX_P
A
SER
39
A
SER
40
1
1
8
A
ASP
63
A
ASP
64
HELX_P
A
GLY
68
A
GLY
69
1
2
6
A
ASP
96
A
ASP
97
HELX_P
A
LEU
111
A
LEU
112
1
3
16
B
ASN
32
B
ASN
33
HELX_P
B
SER
39
B
SER
40
1
4
8
B
ASP
63
B
ASP
64
HELX_P
B
GLY
68
B
GLY
69
1
5
6
B
ASP
96
B
ASP
97
HELX_P
B
LEU
111
B
LEU
112
1
6
16
metalc
2.445
A
GLN
86
A
O
GLN
87
1_555
A
NA
204
G
NA
NA
1_555
metalc
2.354
A
LEU
88
A
O
LEU
89
1_555
A
NA
204
G
NA
NA
1_555
metalc
2.410
A
NA
204
G
NA
NA
1_555
A
HOH
309
K
O
HOH
1_555
metalc
2.365
A
NA
204
G
NA
NA
1_555
A
HOH
338
K
O
HOH
1_555
metalc
2.435
A
NA
204
G
NA
NA
1_555
A
HOH
355
K
O
HOH
1_555
metalc
2.387
A
NA
204
G
NA
NA
1_555
A
HOH
428
K
O
HOH
1_555
HYDROLASE/RNA
Toxin-antitoxin complex, Toxin-mRNA complex, MazF, mRNA interferase, EndoA, YdcE, Toxin, Antitoxin, MazE, HYDROLASE-RNA complex
A
SER
14
A
SER
15
1
A
PRO
15
A
PRO
16
-5.38
B
SER
14
B
SER
15
1
B
PRO
15
B
PRO
16
1.42
ENDOA_BACSU
UNP
1
1
P96622
MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQI
RTIDKQRLTDKITHLDDEMMDKVDEALQISLALIDF
4MDX
PDB
2
4MDX
UUUACAUAA
1
116
4MDX
1
116
P96622
A
1
2
117
1
116
4MDX
1
116
P96622
B
1
2
117
1
9
4MDX
1
9
4MDX
C
2
1
9
1
expression tag
SER
0
4MDX
A
P96622
UNP
1
2
expression tag
SER
0
4MDX
B
P96622
UNP
1
6
6
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
59
A
HIS
60
A
ILE
62
A
ILE
63
A
SER
73
A
SER
74
A
ASP
84
A
ASP
85
A
THR
41
A
THR
42
A
THR
48
A
THR
49
A
VAL
24
A
VAL
25
A
VAL
29
A
VAL
30
A
ASP
7
A
ASP
8
A
ASP
12
A
ASP
13
A
LEU
88
A
LEU
89
A
HIS
94
A
HIS
95
B
HIS
59
B
HIS
60
B
ILE
62
B
ILE
63
B
SER
73
B
SER
74
B
ASP
84
B
ASP
85
B
THR
41
B
THR
42
B
THR
48
B
THR
49
B
VAL
24
B
VAL
25
B
VAL
29
B
VAL
30
B
ASP
7
B
ASP
8
B
ASP
12
B
ASP
13
B
LEU
88
B
LEU
89
B
HIS
94
B
HIS
95
BINDING SITE FOR RESIDUE IOD A 201
A
IOD
201
Software
1
BINDING SITE FOR RESIDUE IOD A 202
A
IOD
202
Software
2
BINDING SITE FOR RESIDUE IOD A 203
A
IOD
203
Software
3
BINDING SITE FOR RESIDUE NA A 204
A
NA
204
Software
6
BINDING SITE FOR RESIDUE IOD B 202
B
IOD
202
Software
2
BINDING SITE FOR RESIDUE IOD C 101
C
IOD
101
Software
1
A
ASP
97
A
ASP
98
1
1_555
A
GLU
70
A
GLU
71
2
1_555
C
U
1
C
U
1
2
4_555
A
ASP
33
A
ASP
34
3
1_555
B
LYS
4
B
LYS
5
3
3_545
B
HOH
435
L
HOH
3
1_555
A
GLN
86
A
GLN
87
6
1_555
A
LEU
88
A
LEU
89
6
1_555
A
HOH
309
K
HOH
6
1_555
A
HOH
338
K
HOH
6
1_555
A
HOH
355
K
HOH
6
1_555
A
HOH
428
K
HOH
6
1_555
A
LYS
4
A
LYS
5
2
3_555
B
HOH
302
L
HOH
2
1_555
C
A
4
C
A
4
1
1_555
19
P 21 21 21