0.005992 0.000000 0.000000 0.000000 0.024752 0.000000 0.000000 0.000000 0.013587 0.00000 0.00000 0.00000 Lau, M.W.L. Ferre-D'Amare, A.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 166.900 40.400 73.600 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 N C N 84 R C Y 85 N N Y 86 N C Y 87 N N Y 88 N C Y 89 N C N 90 N N Y 91 N N Y 92 N C Y 93 N N Y 94 N C N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N O N 110 N P N 111 N O N 112 N O N 113 N O N 114 N C N 115 R C N 116 N O N 117 S C N 118 N O N 119 R C N 120 N O N 121 R C Y 122 N N Y 123 N C Y 124 N N Y 125 N C N 126 N C N 127 N O N 128 N N N 129 N C N 130 N N N 131 N N Y 132 N C N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N O N 148 N H N 149 N H N 150 N MG N 151 N O N 152 N P N 153 N O N 154 N O N 155 N O N 156 N C N 157 R C N 158 N O N 159 S C N 160 N O N 161 R C N 162 N O N 163 R C N 164 N N N 165 N C N 166 N O N 167 N N N 168 N C N 169 N O N 170 N C N 171 N C N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing Y 99 N sing Y 100 N sing Y 101 N doub N 102 N sing Y 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N doub N 108 N sing N 109 N sing Y 110 N sing Y 111 N doub N 112 N sing Y 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing Y 138 N sing Y 139 N sing Y 140 N doub N 141 N sing Y 142 N sing N 143 N sing Y 144 N doub N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N doub N 189 N sing N 190 N sing US Nat.Chem.Biol. 1552-4450 9 805 810 10.1038/nchembio.1360 24096303 An in vitro evolved glmS ribozyme has the wild-type fold but loses coenzyme dependence. 2013 10.2210/pdb4meg/pdb pdb_00004meg 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2011-11-28 ADSC QUANTUM 315r double crystal si SINGLE WAVELENGTH M x-ray 1 0.9774 1.0 5.0.2 ALS 0.9774 SYNCHROTRON ALS BEAMLINE 5.0.2 8593.168 glmS triple mutant ribozyme 1 syn polymer 40951.414 (121-MER) ribozyme 1 syn polymer 24.305 MAGNESIUM ION 16 syn non-polymer 18.015 water 1 nat water no no (DA)GCGCCUGGACUUAAAGCCAUUGCACU AGCGCCUGGACUUAAAGCCAUUGCACU A polyribonucleotide no no GGCGGCUUUAAGUUGACGAGGGCAGGGUUAAACGAGACAUCGGCGAGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGAC UGGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA GGCGGCUUUAAGUUGACGAGGGCAGGGUUAAACGAGACAUCGGCGAGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGAC UGGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.50 50.88 VAPOR DIFFUSION, HANGING DROP 6.5 5% PEG 8000, 0.5M lithium chloride, 25mM magnesium acetate, 25mM magnesium chloride, 0.5mM spermine, 25mM cacodylate, 25mM HEPES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K 294 5.964 1 19 A 2 B 45 -4.556 A_C2:G45_B 1 -5.478 0.009 -0.530 -0.144 -8.370 1 19 A 3 B 44 -5.760 A_G3:C44_B 2 -5.537 -0.017 -0.114 -0.345 -2.277 1 19 A 4 B 43 3.554 A_C4:G43_B 3 -8.813 0.241 -0.320 0.132 5.497 1 19 A 5 B 42 1.562 A_C5:G42_B 4 -8.421 -0.188 -0.269 0.111 -2.809 1 19 A 7 B 41 0.536 A_G7:C41_B 5 -0.310 -1.051 -0.413 -0.362 19.070 A 8 B 14 -21.909 A_G8:U14_B 6 -11.867 -2.259 -0.171 -0.144 14.870 1 20 A 9 B 13 -1.430 A_A9:U13_B 7 -13.965 -0.147 0.167 0.001 1.129 1 19 A 10 B 12 -1.715 A_C10:G12_B 8 -18.178 -0.051 0.158 -0.177 -12.090 1 20 A 11 B 11 7.019 A_U11:A11_B 9 -23.221 0.010 0.633 -0.254 4.470 1 20 A 12 B 10 3.237 A_U12:A10_B 10 -16.462 -0.325 -0.588 -0.073 0.628 A 13 B 9 11.622 A_A13:U9_B 11 -11.769 0.139 -0.199 0.253 6.470 1 20 A 14 B 8 4.469 A_A14:U8_B 12 -12.193 -0.036 0.067 -0.106 5.562 1 20 A 15 B 7 -10.162 A_A15:U7_B 13 -8.689 0.055 0.299 -0.018 -29.931 1 19 A 16 B 6 14.910 A_G16:C6_B 14 20.203 -0.072 1.083 -0.543 5.208 2 21 B 40 B 35 -169.686 B_U40:A35_B 15 -12.004 -0.175 0.136 -0.951 -19.525 1 19 B 17 B 34 4.344 B_C17:G34_B 16 5.979 -0.330 0.206 -0.185 1.422 1 19 B 18 B 33 -1.335 B_G18:C33_B 17 -10.375 -0.069 -0.230 -0.019 10.411 6 B 19 B 109 -108.676 B_A19:G109_B 18 45.793 -0.650 0.137 -8.235 13.527 B 31 B 29 42.789 B_A31:U29_B 19 8.949 -3.519 -0.141 -0.167 7.136 1 28 B 49 B 28 -14.003 B_G49:U28_B 20 -17.119 -2.258 -0.247 -0.504 10.557 1 19 B 50 B 27 -6.053 B_C50:G27_B 21 -18.980 0.094 0.054 -0.091 10.130 1 19 B 51 B 26 2.766 B_C51:G26_B 22 -15.684 -0.360 0.016 -0.171 3.705 1 19 B 52 B 25 3.924 B_C52:G25_B 23 -12.402 -1.144 0.187 0.015 4.515 1 20 B 53 B 24 8.740 B_U53:A24_B 24 -2.502 -0.037 0.008 -0.367 7.110 1 19 B 54 B 23 1.897 B_G54:C23_B 25 -5.348 -0.070 0.008 0.101 -2.566 1 19 B 55 B 71 -5.714 B_C55:G71_B 26 -5.191 -0.421 0.436 -0.020 1.242 1 19 B 56 B 70 1.512 B_G56:C70_B 27 -23.555 -0.182 0.380 -0.190 12.413 1 19 B 57 B 69 -3.878 B_G57:C69_B 28 -5.404 0.036 0.909 -0.058 -5.257 1 20 B 58 B 68 -1.787 B_U58:A68_B 29 -17.115 0.293 0.360 -0.043 4.957 1 19 B 59 B 67 -3.057 B_C59:G67_B 30 -18.412 0.871 0.069 -0.433 -9.412 1 19 B 120 B 66 4.256 B_G120:C66_B 31 -20.868 0.543 -0.289 -0.313 -3.949 1 19 B 121 B 65 -10.085 B_C121:G65_B 32 -10.035 0.602 -0.160 -0.380 11.348 1 20 B 122 B 64 -4.656 B_A122:U64_B 33 -7.220 0.108 0.203 -0.116 5.080 1 19 B 123 B 63 4.623 B_G123:C63_B 34 -14.246 0.414 -0.018 0.277 -10.230 1 19 B 124 B 62 3.221 B_G124:C62_B 35 -18.675 0.523 -0.437 0.090 -17.102 1 20 B 125 B 61 -7.123 B_A125:U61_B 36 -13.384 -0.529 -0.021 0.349 4.985 9 11 B 76 B 118 5.800 B_A76:G118_B 37 -7.461 -6.924 0.155 -4.014 -2.917 1 19 B 77 B 117 5.303 B_G77:C117_B 38 -11.831 0.244 -0.101 0.006 -9.345 1 19 B 78 B 116 0.441 B_G78:C116_B 39 -4.444 -0.278 -0.171 -0.438 -4.060 1 20 B 79 B 115 1.027 B_A79:U115_B 40 -13.219 -0.120 0.096 -0.036 -3.725 1 19 B 80 B 114 -4.437 B_C80:G114_B 41 -12.397 0.906 0.502 -0.580 -4.454 1 20 B 81 B 113 3.287 B_U81:A113_B 42 -15.087 0.249 0.701 -0.031 -3.575 1 19 B 82 B 112 -0.052 B_G82:C112_B 43 -9.100 0.109 0.272 -0.042 -9.220 B 83 B 110 -47.319 B_G83:A110_B 44 -4.217 7.831 0.613 -5.039 1.867 4 24 B 86 B 107 -96.384 B_A86:U107_B 45 -3.749 -4.191 -0.432 -1.895 13.150 4 5 B 87 B 106 -106.089 B_A87:A106_B 46 -9.792 -4.462 -0.366 0.915 10.566 4 25 B 88 B 105 -78.167 B_A88:C105_B 47 -26.671 -3.053 -1.653 -0.813 6.553 1 19 B 89 B 104 -3.901 B_C89:G104_B 48 -13.156 -0.218 -0.130 -0.339 7.404 1 19 B 90 B 103 -2.863 B_C90:G103_B 49 -12.329 -0.001 -0.082 -0.192 6.798 1 20 B 91 B 102 -0.367 B_A91:U102_B 50 -15.083 0.017 0.063 -0.223 5.534 1 19 B 92 B 101 -2.056 B_C92:G101_B 51 -15.738 -0.367 0.153 -0.249 3.528 1 20 B 93 B 100 -0.327 B_A93:U100_B 52 -11.520 -0.277 0.244 -0.289 -0.276 1 19 B 94 B 99 1.251 B_G94:C99_B 53 0.022 -0.546 -0.129 -0.242 -1.879 B 95 B 98 -43.961 B_G95:A98_B 54 -18.121 7.649 0.927 -5.428 2.709 34.431 A A 2 3 19.963 B B 45 44 3.603 11.590 -0.370 -2.169 AA_C2G3:C44G45_BB 1 -2.293 3.949 32.398 -5.462 0.270 2.763 32.564 A A 3 4 12.445 B B 44 43 3.088 6.921 0.493 -1.382 AA_G3C4:G43C44_BB 2 2.560 -4.603 31.739 -3.558 -0.475 2.743 32.785 A A 4 5 12.608 B B 43 42 3.134 7.055 0.195 -1.558 AA_C4C5:G42G43_BB 3 2.757 -4.928 31.921 -3.866 0.086 2.849 47.052 A A 5 7 12.105 B B 42 41 3.552 9.593 -2.406 -2.215 AA_C5G7:C41G42_BB 4 4.080 -5.149 45.947 -3.557 3.346 2.500 68.829 A A 7 8 0.568 B B 41 14 3.121 0.639 3.547 -1.048 AA_G7G8:U14C41_BB 5 -12.596 11.193 67.804 -0.948 -3.541 2.984 44.779 A A 8 9 6.948 B B 14 13 3.302 5.266 0.713 -1.531 AA_G8A9:U13U14_BB 6 -6.369 8.404 44.049 -2.474 -1.498 3.244 36.611 A A 9 10 6.949 B B 13 12 3.495 4.355 0.327 -1.947 AA_A9C10:G12U13_BB 7 -0.407 0.649 36.358 -3.719 -0.578 2.306 31.702 A A 10 11 24.313 B B 12 11 3.397 12.904 -0.280 -2.060 AA_C10U11:A11G12_BB 8 -2.099 3.955 28.944 -5.942 0.160 2.696 28.122 A A 11 12 5.488 B B 11 10 2.875 2.660 -0.873 -0.849 AA_U11U12:A10A11_BB 9 2.531 -5.224 27.886 -2.280 2.305 2.677 38.565 A A 12 13 29.709 B B 10 9 3.362 18.816 0.114 -0.554 AA_U12A13:U9A10_BB 10 -3.178 5.018 33.670 -3.147 -0.562 2.891 31.570 A A 13 14 15.635 B B 9 8 3.220 8.408 0.173 -0.827 AA_A13A14:U8U9_BB 11 -0.616 1.145 30.451 -3.006 -0.426 2.810 30.323 A A 14 15 14.613 B B 8 7 3.280 7.565 -0.367 -1.464 AA_A14A15:U7U8_BB 12 1.057 -2.042 29.366 -4.241 0.904 2.592 38.558 A A 15 16 20.008 B B 7 6 4.177 12.867 1.963 -2.589 AA_A15G16:C6U7_BB 13 -8.549 13.294 35.436 -5.644 -4.118 -1.118 -177.624 B B 40 17 41.797 B B 35 34 2.223 -82.788 -3.333 2.257 BB_U40C17:G34A35_BB 14 -157.013 -79.271 -35.893 -0.942 -2.022 2.773 25.127 B B 17 18 1.391 B B 34 33 2.966 0.600 -0.388 -0.900 BB_C17G18:C33G34_BB 15 5.932 -13.764 24.420 -2.225 2.446 2.654 98.713 B B 18 19 -14.062 B B 33 109 3.158 -21.227 -2.495 1.658 BB_G18A19:G109C33_BB 16 9.820 -6.505 96.612 1.404 1.788 0.041 -175.264 B B 31 49 37.481 B B 29 28 -2.906 -73.556 -2.374 -2.561 BB_A31G49:U28U29_BB 17 158.761 80.897 -39.127 0.856 -2.106 3.104 48.323 B B 49 50 4.420 B B 28 27 3.194 3.609 0.122 -0.774 BB_G49C50:G27U28_BB 18 -5.107 6.254 47.941 -1.217 -0.533 2.176 33.068 B B 50 51 21.117 B B 27 26 3.127 11.769 0.091 -2.177 BB_C50C51:G26G27_BB 19 -0.076 0.136 30.957 -5.494 -0.171 2.432 34.020 B B 51 52 23.032 B B 26 25 3.239 13.121 0.001 -1.468 BB_C51C52:G25G26_BB 20 -3.487 6.121 31.267 -4.406 -0.506 3.025 37.958 B B 52 53 8.585 B B 25 24 3.217 5.564 0.056 -1.096 BB_C52U53:A24G25_BB 21 -1.594 2.460 37.530 -2.367 -0.281 2.439 34.015 B B 53 54 15.833 B B 24 23 2.981 9.154 0.356 -1.639 BB_U53G54:C23A24_BB 22 -0.894 1.546 32.784 -4.036 -0.728 3.009 39.130 B B 54 55 10.493 B B 23 71 3.365 6.984 0.191 -1.620 BB_G54C55:G71C23_BB 23 -3.450 5.184 38.377 -3.244 -0.693 2.331 37.660 B B 55 56 17.293 B B 71 70 2.854 11.006 0.779 -1.569 BB_C55G56:C70G71_BB 24 2.025 -3.182 36.017 -3.590 -0.994 2.659 31.898 B B 56 57 7.140 B B 70 69 2.763 3.873 -0.908 -1.882 BB_G56G57:C69C70_BB 25 -8.151 15.027 30.626 -4.021 0.397 3.094 36.083 B B 57 58 19.153 B B 69 68 3.748 11.658 -0.499 -1.378 BB_G57U58:A68C69_BB 26 2.039 -3.350 34.148 -4.002 1.117 2.802 36.011 B B 58 59 5.935 B B 68 67 2.927 3.663 0.081 -1.133 BB_U58C59:G67A68_BB 27 1.385 -2.244 35.805 -2.290 0.043 2.926 42.892 B B 59 120 17.549 B B 67 66 3.491 12.654 -0.644 -1.370 BB_C59G120:C66G67_BB 28 2.199 -3.049 41.011 -3.138 1.101 2.774 31.760 B B 120 121 14.344 B B 66 65 3.142 7.773 -0.713 -1.241 BB_G120C121:G65C66_BB 29 -0.968 1.787 30.804 -3.578 1.140 1.785 30.965 B B 121 122 26.880 B B 65 64 2.769 13.861 0.445 -1.635 BB_C121A122:U64G65_BB 30 1.153 -2.236 27.734 -5.034 -0.670 2.790 33.273 B B 122 123 21.599 B B 64 63 3.414 12.078 0.657 -1.270 BB_A122G123:C63U64_BB 31 3.451 -6.172 30.873 -4.207 -0.580 3.000 35.025 B B 123 124 18.698 B B 63 62 3.678 11.016 0.562 -1.769 BB_G123G124:C62C63_BB 32 6.080 -10.320 32.754 -4.692 0.033 3.110 32.327 B B 124 125 8.927 B B 62 61 3.383 4.952 -0.493 -1.617 BB_G124A125:U61C62_BB 33 -0.405 0.730 31.953 -3.780 0.814 3.608 65.760 B B 76 77 10.851 B B 118 117 3.700 11.720 -0.031 -0.234 BB_A76G77:C117G118_BB 34 -5.482 5.075 64.615 -0.755 -0.224 2.788 28.731 B B 77 78 13.609 B B 117 116 3.341 6.693 -0.351 -2.006 BB_G77G78:C116C117_BB 35 0.528 -1.074 27.952 -5.471 0.821 2.212 34.873 B B 78 79 25.476 B B 116 115 3.055 14.811 0.070 -1.374 BB_G78A79:U115C116_BB 36 -0.230 0.396 31.659 -4.197 -0.146 3.381 37.713 B B 79 80 -0.387 B B 115 114 3.372 -0.250 -0.215 -1.181 BB_A79C80:G114U115_BB 37 -4.857 7.533 37.409 -1.794 -0.319 2.767 28.423 B B 80 81 7.777 B B 114 113 3.047 3.804 0.382 -2.080 BB_C80U81:A113G114_BB 38 2.185 -4.467 28.090 -5.017 -0.329 2.766 31.226 B B 81 82 8.529 B B 113 112 2.951 4.532 0.910 -2.013 BB_U81G82:C112A113_BB 39 7.508 -14.130 29.999 -4.507 -0.419 3.397 87.947 B B 82 83 1.776 B B 112 110 3.450 2.466 -1.136 -1.474 BB_G82G83:A110C112_BB 40 1.893 -1.364 87.904 -1.117 0.860 3.218 34.489 B B 86 87 -12.278 B B 107 106 3.022 -7.224 -0.435 -1.444 BB_A86A87:A106U107_BB 41 2.321 -3.945 33.668 -1.354 1.081 2.609 54.485 B B 87 88 21.022 B B 106 105 3.974 18.880 2.012 -3.009 BB_A87A88:C105A106_BB 42 -4.808 5.354 51.134 -4.482 -2.502 2.341 52.811 B B 88 89 19.057 B B 105 104 3.568 16.689 3.666 -2.876 BB_A88C89:G104C105_BB 43 -3.259 3.722 50.186 -4.238 -4.318 3.230 33.327 B B 89 90 3.419 B B 104 103 3.310 1.959 -0.208 -1.413 BB_C89C90:G103G104_BB 44 -1.240 2.164 33.249 -2.790 0.156 2.653 37.491 B B 90 91 16.090 B B 103 102 3.119 10.216 0.211 -1.373 BB_C90A91:U102G103_BB 45 1.597 -2.516 36.086 -3.340 -0.139 2.636 31.388 B B 91 92 18.312 B B 102 101 3.186 9.747 -0.163 -1.329 BB_A91C92:G101U102_BB 46 -1.452 2.727 29.838 -4.130 0.052 2.420 34.450 B B 92 93 17.548 B B 101 100 3.101 10.243 0.604 -1.831 BB_C92A93:U100G101_BB 47 -1.060 1.815 32.920 -4.470 -1.163 2.360 30.902 B B 93 94 21.917 B B 100 99 3.349 11.390 0.701 -2.269 BB_A93G94:C99U100_BB 48 3.459 -6.655 28.569 -6.265 -0.706 2.646 59.093 B B 94 95 19.232 B B 99 98 3.332 18.694 -4.241 -1.425 BB_G94G95:A98C99_BB 49 1.935 -1.991 56.282 -2.344 4.394 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2013-10-16 1 1 2013-11-27 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2013-08-26 REL REL MG MAGNESIUM ION HOH water This is a mutant ribozyme construct from the Thermoanaerobacter tengcongensis glmS ribozyme sample 2Z75 PDB entry 2Z75 PDB experimental model MG2 206 3 MG MG 101 A MG2 201 3 MG MG 201 B MG2 202 3 MG MG 202 B MG2 203 3 MG MG 203 B MG2 204 3 MG MG 204 B MG2 205 3 MG MG 205 B MG2 207 3 MG MG 206 B MG2 208 3 MG MG 207 B MG2 209 3 MG MG 208 B MG2 210 3 MG MG 209 B MG2 211 3 MG MG 210 B MG2 212 3 MG MG 211 B MG2 213 3 MG MG 212 B MG2 214 3 MG MG 213 B MG2 215 3 MG MG 214 B MG2 216 3 MG MG 215 B HOH 310 4 HOH HOH 301 B G 0 n 1 DA 0 A G 1 n 2 G 1 A C 2 n 3 C 2 A G 3 n 4 G 3 A C 4 n 5 C 4 A C 5 n 6 C 5 A U 6 n 7 U 6 A G 7 n 8 G 7 A G 8 n 9 G 8 A A 9 n 10 A 9 A C 10 n 11 C 10 A U 11 n 12 U 11 A U 12 n 13 U 12 A A 13 n 14 A 13 A A 14 n 15 A 14 A A 15 n 16 A 15 A G 16 n 17 G 16 A A 17 n 18 C 17 A n 19 18 A n 20 19 A n 21 20 A n 22 21 A n 23 22 A n 24 23 A n 25 24 A n 26 25 A n 27 26 A n 1 1 B n 2 2 B n 3 3 B n 4 4 B n 5 5 B C 25 n 6 C 6 B U 26 n 7 U 7 B U 27 n 8 U 8 B U 28 n 9 U 9 B A 29 n 10 A 10 B A 30 n 11 A 11 B G 31 n 12 G 12 B U 32 n 13 U 13 B U 33 n 14 U 14 B G 34 n 15 G 15 B A 35 n 16 A 16 B C 36 n 17 C 17 B G 37 n 18 G 18 B A 38 n 19 A 19 B G 39 n 20 G 20 B G 40 n 21 G 21 B G 41 n 22 G 22 B C 42 n 23 C 23 B A 43 n 24 A 24 B G 44 n 25 G 25 B G 45 n 26 G 26 B G 46 n 27 G 27 B U 47 n 28 U 28 B U 48 n 29 U 29 B A 49 n 30 A 30 B A 50 n 31 A 31 B A 51 n 32 A 32 B C 52 n 33 C 33 B G 53 n 34 G 34 B A 54 n 35 A 35 B G 55 n 36 G 36 B A 56 n 37 A 37 B C 57 n 38 C 38 B A 58 n 39 A 39 B U 59 n 40 U 40 B C 60 n 41 C 41 B G 61 n 42 G 42 B G 62 n 43 G 43 B C 63 n 44 C 44 B G 64 n 45 G 45 B A 65 n 46 A 46 B G 66 n 47 G 47 B U 67 n 48 U 48 B G 68 n 49 G 49 B C 69 n 50 C 50 B C 70 n 51 C 51 B C 71 n 52 C 52 B U 72 n 53 U 53 B G 73 n 54 G 54 B C 74 n 55 C 55 B G 75 n 56 G 56 B G 76 n 57 G 57 B U 77 n 58 U 58 B C 78 n 59 C 59 B U 79 n 60 U 60 B U 80 n 61 U 61 B C 81 n 62 C 62 B C 82 n 63 C 63 B U 83 n 64 U 64 B G 84 n 65 G 65 B C 85 n 66 C 66 B G 86 n 67 G 67 B A 87 n 68 A 68 B C 88 n 69 C 69 B C 89 n 70 C 70 B G 90 n 71 G 71 B U 91 n 72 U 72 B U 92 n 73 U 73 B A 93 n 74 A 74 B G 94 n 75 G 75 B A 95 n 76 A 76 B G 96 n 77 G 77 B G 97 n 78 G 78 B A 98 n 79 A 79 B C 99 n 80 C 80 B U 100 n 81 U 81 B G 101 n 82 G 82 B G 102 n 83 G 83 B U 103 n 84 U 84 B A 104 n 85 A 85 B A 105 n 86 A 86 B A 106 n 87 A 87 B A 107 n 88 A 88 B C 108 n 89 C 89 B C 109 n 90 C 90 B A 110 n 91 A 91 B C 111 n 92 C 92 B A 112 n 93 A 93 B G 113 n 94 G 94 B G 114 n 95 G 95 B C 115 n 96 C 96 B G 116 n 97 G 97 B A 117 n 98 A 98 B C 118 n 99 C 99 B U 119 n 100 U 100 B G 120 n 101 G 101 B U 121 n 102 U 102 B G 122 n 103 G 103 B G 123 n 104 G 104 B C 124 n 105 C 105 B A 125 n 106 A 106 B U 126 n 107 U 107 B A 127 n 108 A 108 B G 128 n 109 G 109 B A 129 n 110 A 110 B G 130 n 111 G 111 B C 131 n 112 C 112 B A 132 n 113 A 113 B G 133 n 114 G 114 B U 134 n 115 U 115 B C 135 n 116 C 116 B C 136 n 117 C 117 B G 137 n 118 G 118 B G 138 n 119 G 119 B G 139 n 120 G 120 B C 140 n 121 C 121 B A 141 n 122 A 122 B G 142 n 123 G 123 B G 143 n 124 G 124 B A 144 n 125 A 125 B A 145 n 126 A 126 B author_and_software_defined_assembly PISA 2 dimeric 4290 -143 20570 A C 2 A OP2 C 3 1_555 B MG 201 D MG MG 1_555 B C 17 B OP2 C 17 1_555 160.2 A C 2 A OP2 C 3 1_555 B MG 201 D MG MG 1_555 B G 18 B OP2 G 18 1_555 93.4 B C 17 B OP2 C 17 1_555 B MG 201 D MG MG 1_555 B G 18 B OP2 G 18 1_555 106.4 B C 41 B OP2 C 41 1_555 B MG 212 O MG MG 1_555 B G 42 B OP2 G 42 1_555 72.9 B U 84 B OP1 U 84 1_555 B MG 209 L MG MG 1_555 B U 84 B O5' U 84 1_555 53.6 B A 85 B OP2 A 85 1_555 B MG 204 G MG MG 1_555 B A 86 B OP2 A 86 1_555 81.8 B A 85 B OP2 A 85 1_555 B MG 204 G MG MG 1_555 B U 107 B O4 U 107 1_555 63.3 B A 86 B OP2 A 86 1_555 B MG 204 G MG MG 1_555 B U 107 B O4 U 107 1_555 59.0 B A 87 B OP1 A 87 1_555 B MG 206 I MG MG 1_555 B G 104 B O6 G 104 1_555 85.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A O5' DA 0 A O5' DA 1 1 Y 1 A C5' DA 0 A C5' DA 1 1 Y 1 A C4' DA 0 A C4' DA 1 1 Y 1 A O4' DA 0 A O4' DA 1 1 Y 1 A C3' DA 0 A C3' DA 1 1 Y 1 A C2' DA 0 A C2' DA 1 1 Y 1 A C1' DA 0 A C1' DA 1 1 Y 1 A N9 DA 0 A N9 DA 1 1 Y 1 A C8 DA 0 A C8 DA 1 1 Y 1 A N7 DA 0 A N7 DA 1 1 Y 1 A C5 DA 0 A C5 DA 1 1 Y 1 A C6 DA 0 A C6 DA 1 1 Y 1 A N6 DA 0 A N6 DA 1 1 Y 1 A N1 DA 0 A N1 DA 1 1 Y 1 A C2 DA 0 A C2 DA 1 1 Y 1 A N3 DA 0 A N3 DA 1 1 Y 1 A C4 DA 0 A C4 DA 1 1 Y 1 A N1 U 6 A N1 U 7 1 Y 1 A C2 U 6 A C2 U 7 1 Y 1 A O2 U 6 A O2 U 7 1 Y 1 A N3 U 6 A N3 U 7 1 Y 1 A C4 U 6 A C4 U 7 1 Y 1 A O4 U 6 A O4 U 7 1 Y 1 A C5 U 6 A C5 U 7 1 Y 1 A C6 U 6 A C6 U 7 1 Y 1 A C5' C 17 A C5' C 18 1 Y 1 A C4' C 17 A C4' C 18 1 Y 1 A O4' C 17 A O4' C 18 1 Y 1 A C3' C 17 A C3' C 18 1 Y 1 A O3' C 17 A O3' C 18 1 Y 1 A C2' C 17 A C2' C 18 1 Y 1 A O2' C 17 A O2' C 18 1 Y 1 A C1' C 17 A C1' C 18 1 Y 1 A N1 C 17 A N1 C 18 1 Y 1 A C2 C 17 A C2 C 18 1 Y 1 A O2 C 17 A O2 C 18 1 Y 1 A N3 C 17 A N3 C 18 1 Y 1 A C4 C 17 A C4 C 18 1 Y 1 A N4 C 17 A N4 C 18 1 Y 1 A C5 C 17 A C5 C 18 1 Y 1 A C6 C 17 A C6 C 18 1 Y 1 A C 18 A C 19 1 Y 1 A A 19 A A 20 1 Y 1 A U 20 A U 21 1 Y 1 A U 21 A U 22 1 Y 1 A G 22 A G 23 1 Y 1 A C 23 A C 24 1 Y 1 A A 24 A A 25 1 Y 1 A C 25 A C 26 1 Y 1 A U 26 A U 27 1 Y 1 B G 1 B G 1 1 Y 1 B G 2 B G 2 1 Y 1 B C 3 B C 3 1 Y 1 B G 4 B G 4 1 Y 1 B G 5 B G 5 1 Y 1 B A 16 0.057 SIDE CHAIN 1 B G 95 0.051 SIDE CHAIN 1 8.16 1.30 114.00 122.16 B B B N9 C1' C2' G G G 36 36 36 N 1 14.33 1.60 113.70 128.03 B B B C2' C3' O3' C C C 38 38 38 N 1 9.11 1.30 114.00 123.11 B B B N1 C1' C2' U U U 60 60 60 N 1 A A O3' P DA G 0 1 -0.076 0.012 1.607 1.531 Y protein_rep.param protein.top dna-rna_rep.param dna-rna.top water_rep.param water.top ion.param ion.top 79.1 -19.30 0.00 0.00 -2.58 0.00 21.88 BULK SOLVENT MODEL USED 0.252 0.008 0.197 0.197 0.197 3.10 29.88 918 8775 8775 10.5 91.6 RANDOM 50392.28 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB entry 2Z75 Engh & Huber FLAT MODEL 11.8724 0.25 0.43 0.34 5.00 0.53 0.45 3.10 29.88 1 2960 16 2943 0 0.005 1.2 17.3 1.68 0.319 0.029 0.282 3.29 119 1039 6 10.3 75.8 3.1 30 4MEG 9402 0 3.0 0.90 1 13.8 8.0 98.2 0.732 3.1 3.15 3.0 314 1 6.5 85.0 data collection HKL-2000 phasing PHASER refinement CNS 1.2 data reduction HKL-2000 data scaling HKL-2000 In vitro evolved glmS ribozyme triple mutant, magnesium ion complex 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N metalc 2.145 A C 2 A OP2 C 3 1_555 B MG 201 D MG MG 1_555 metalc 2.034 B C 17 B OP2 C 17 1_555 B MG 201 D MG MG 1_555 metalc 2.150 B G 18 B OP2 G 18 1_555 B MG 201 D MG MG 1_555 metalc 2.333 B C 41 B OP2 C 41 1_555 B MG 212 O MG MG 1_555 metalc 2.905 B G 42 B OP2 G 42 1_555 B MG 212 O MG MG 1_555 metalc 2.355 B G 43 B OP1 G 43 1_555 B MG 213 P MG MG 1_555 metalc 2.432 B U 84 B OP1 U 84 1_555 B MG 209 L MG MG 1_555 metalc 2.992 B U 84 B O5' U 84 1_555 B MG 209 L MG MG 1_555 metalc 2.204 B A 85 B OP2 A 85 1_555 B MG 204 G MG MG 1_555 metalc 2.833 B A 86 B OP2 A 86 1_555 B MG 204 G MG MG 1_555 metalc 2.383 B A 87 B OP1 A 87 1_555 B MG 206 I MG MG 1_555 metalc 2.660 B U 102 B OP1 U 102 1_555 B MG 208 K MG MG 1_555 metalc 2.807 B G 104 B O6 G 104 1_555 B MG 206 I MG MG 1_555 metalc 2.585 B U 107 B O4 U 107 1_555 B MG 204 G MG MG 1_555 metalc 2.779 B G 120 B O2' G 120 1_555 B MG 215 R MG MG 1_555 metalc 2.105 B MG 211 N MG MG 1_555 B HOH 301 S O HOH 1_555 hydrog WATSON-CRICK A C 2 A N3 C 3 1_555 B G 45 B N1 G 45 1_555 hydrog WATSON-CRICK A C 2 A N4 C 3 1_555 B G 45 B O6 G 45 1_555 hydrog WATSON-CRICK A C 2 A O2 C 3 1_555 B G 45 B N2 G 45 1_555 hydrog WATSON-CRICK A G 3 A N1 G 4 1_555 B C 44 B N3 C 44 1_555 hydrog WATSON-CRICK A G 3 A N2 G 4 1_555 B C 44 B O2 C 44 1_555 hydrog WATSON-CRICK A G 3 A O6 G 4 1_555 B C 44 B N4 C 44 1_555 hydrog WATSON-CRICK A C 4 A N3 C 5 1_555 B G 43 B N1 G 43 1_555 hydrog WATSON-CRICK A C 4 A N4 C 5 1_555 B G 43 B O6 G 43 1_555 hydrog WATSON-CRICK A C 4 A O2 C 5 1_555 B G 43 B N2 G 43 1_555 hydrog WATSON-CRICK A C 5 A N3 C 6 1_555 B G 42 B N1 G 42 1_555 hydrog WATSON-CRICK A C 5 A N4 C 6 1_555 B G 42 B O6 G 42 1_555 hydrog WATSON-CRICK A C 5 A O2 C 6 1_555 B G 42 B N2 G 42 1_555 hydrog G-G MISPAIR A G 7 A O6 G 8 1_555 B G 15 B N2 G 15 1_555 hydrog WATSON-CRICK A G 7 A N1 G 8 1_555 B C 41 B N3 C 41 1_555 hydrog WATSON-CRICK A G 7 A N2 G 8 1_555 B C 41 B O2 C 41 1_555 hydrog WATSON-CRICK A G 7 A O6 G 8 1_555 B C 41 B N4 C 41 1_555 hydrog G-U MISPAIR A G 8 A O6 G 9 1_555 B U 14 B N3 U 14 1_555 hydrog G-A MISPAIR A G 8 A N2 G 9 1_555 B A 39 B N3 A 39 1_555 hydrog WATSON-CRICK A A 9 A N1 A 10 1_555 B U 13 B N3 U 13 1_555 hydrog WATSON-CRICK A A 9 A N6 A 10 1_555 B U 13 B O4 U 13 1_555 hydrog WATSON-CRICK A C 10 A N3 C 11 1_555 B G 12 B N1 G 12 1_555 hydrog WATSON-CRICK A C 10 A N4 C 11 1_555 B G 12 B O6 G 12 1_555 hydrog WATSON-CRICK A C 10 A O2 C 11 1_555 B G 12 B N2 G 12 1_555 hydrog WATSON-CRICK A U 11 A N3 U 12 1_555 B A 11 B N1 A 11 1_555 hydrog WATSON-CRICK A U 11 A O4 U 12 1_555 B A 11 B N6 A 11 1_555 hydrog U-G MISPAIR A U 11 A O2 U 12 1_555 B G 97 B N2 G 97 1_555 hydrog WATSON-CRICK A U 12 A N3 U 13 1_555 B A 10 B N1 A 10 1_555 hydrog WATSON-CRICK A U 12 A O4 U 13 1_555 B A 10 B N6 A 10 1_555 hydrog A-U PAIR A A 13 A N1 A 14 1_555 B U 9 B N3 U 9 1_555 hydrog WATSON-CRICK A A 14 A N1 A 15 1_555 B U 8 B N3 U 8 1_555 hydrog WATSON-CRICK A A 14 A N6 A 15 1_555 B U 8 B O4 U 8 1_555 hydrog WATSON-CRICK A A 15 A N1 A 16 1_555 B U 7 B N3 U 7 1_555 hydrog WATSON-CRICK A A 15 A N6 A 16 1_555 B U 7 B O4 U 7 1_555 hydrog WATSON-CRICK A G 16 A N1 G 17 1_555 B C 6 B N3 C 6 1_555 hydrog WATSON-CRICK A G 16 A N2 G 17 1_555 B C 6 B O2 C 6 1_555 hydrog WATSON-CRICK A G 16 A O6 G 17 1_555 B C 6 B N4 C 6 1_555 hydrog G-A MISPAIR B G 12 B N2 G 12 1_555 B A 98 B N3 A 98 1_555 hydrog WATSON-CRICK B C 17 B N3 C 17 1_555 B G 34 B N1 G 34 1_555 hydrog WATSON-CRICK B C 17 B N4 C 17 1_555 B G 34 B O6 G 34 1_555 hydrog WATSON-CRICK B C 17 B O2 C 17 1_555 B G 34 B N2 G 34 1_555 hydrog WATSON-CRICK B G 18 B N1 G 18 1_555 B C 33 B N3 C 33 1_555 hydrog WATSON-CRICK B G 18 B N2 G 18 1_555 B C 33 B O2 C 33 1_555 hydrog WATSON-CRICK B G 18 B O6 G 18 1_555 B C 33 B N4 C 33 1_555 hydrog G-A MISPAIR B G 18 B N2 G 18 1_555 B A 108 B N1 A 108 1_555 hydrog A-G MISPAIR B A 19 B N3 A 19 1_555 B G 109 B N2 G 109 1_555 hydrog WATSON-CRICK B C 23 B N3 C 23 1_555 B G 54 B N1 G 54 1_555 hydrog WATSON-CRICK B C 23 B N4 C 23 1_555 B G 54 B O6 G 54 1_555 hydrog WATSON-CRICK B C 23 B O2 C 23 1_555 B G 54 B N2 G 54 1_555 hydrog WATSON-CRICK B A 24 B N1 A 24 1_555 B U 53 B N3 U 53 1_555 hydrog WATSON-CRICK B A 24 B N6 A 24 1_555 B U 53 B O4 U 53 1_555 hydrog WATSON-CRICK B G 25 B N1 G 25 1_555 B C 52 B N3 C 52 1_555 hydrog WATSON-CRICK B G 25 B N2 G 25 1_555 B C 52 B O2 C 52 1_555 hydrog WATSON-CRICK B G 25 B O6 G 25 1_555 B C 52 B N4 C 52 1_555 hydrog WATSON-CRICK B G 26 B N1 G 26 1_555 B C 51 B N3 C 51 1_555 hydrog WATSON-CRICK B G 26 B N2 G 26 1_555 B C 51 B O2 C 51 1_555 hydrog WATSON-CRICK B G 26 B O6 G 26 1_555 B C 51 B N4 C 51 1_555 hydrog WATSON-CRICK B G 27 B N1 G 27 1_555 B C 50 B N3 C 50 1_555 hydrog WATSON-CRICK B G 27 B N2 G 27 1_555 B C 50 B O2 C 50 1_555 hydrog WATSON-CRICK B G 27 B O6 G 27 1_555 B C 50 B N4 C 50 1_555 hydrog TYPE_28_PAIR B U 28 B N3 U 28 1_555 B G 49 B O6 G 49 1_555 hydrog TYPE_28_PAIR B U 28 B O2 U 28 1_555 B G 49 B N1 G 49 1_555 hydrog U-A PAIR B U 29 B O2 U 29 1_555 B A 31 B N6 A 31 1_555 hydrog G-A MISPAIR B G 34 B N2 G 34 1_555 B A 85 B N1 A 85 1_555 hydrog REVERSED WATSON-CRICK B A 35 B N1 A 35 1_555 B U 40 B N3 U 40 1_555 hydrog REVERSED WATSON-CRICK B A 35 B N6 A 35 1_555 B U 40 B O2 U 40 1_555 hydrog WATSON-CRICK B C 55 B N3 C 55 1_555 B G 71 B N1 G 71 1_555 hydrog WATSON-CRICK B C 55 B N4 C 55 1_555 B G 71 B O6 G 71 1_555 hydrog WATSON-CRICK B C 55 B O2 C 55 1_555 B G 71 B N2 G 71 1_555 hydrog WATSON-CRICK B G 56 B N1 G 56 1_555 B C 70 B N3 C 70 1_555 hydrog WATSON-CRICK B G 56 B N2 G 56 1_555 B C 70 B O2 C 70 1_555 hydrog WATSON-CRICK B G 56 B O6 G 56 1_555 B C 70 B N4 C 70 1_555 hydrog G-A MISPAIR B G 56 B N2 G 56 1_555 B A 74 B N3 A 74 1_555 hydrog WATSON-CRICK B G 57 B N1 G 57 1_555 B C 69 B N3 C 69 1_555 hydrog WATSON-CRICK B G 57 B N2 G 57 1_555 B C 69 B O2 C 69 1_555 hydrog WATSON-CRICK B G 57 B O6 G 57 1_555 B C 69 B N4 C 69 1_555 hydrog WATSON-CRICK B U 58 B N3 U 58 1_555 B A 68 B N1 A 68 1_555 hydrog WATSON-CRICK B U 58 B O4 U 58 1_555 B A 68 B N6 A 68 1_555 hydrog WATSON-CRICK B C 59 B N3 C 59 1_555 B G 67 B N1 G 67 1_555 hydrog WATSON-CRICK B C 59 B N4 C 59 1_555 B G 67 B O6 G 67 1_555 hydrog WATSON-CRICK B C 59 B O2 C 59 1_555 B G 67 B N2 G 67 1_555 hydrog U-C MISPAIR B U 60 B O2 U 60 1_555 B C 62 B N4 C 62 1_555 hydrog WATSON-CRICK B U 61 B N3 U 61 1_555 B A 125 B N1 A 125 1_555 hydrog WATSON-CRICK B U 61 B O4 U 61 1_555 B A 125 B N6 A 125 1_555 hydrog WATSON-CRICK B C 62 B N3 C 62 1_555 B G 124 B N1 G 124 1_555 hydrog WATSON-CRICK B C 62 B N4 C 62 1_555 B G 124 B O6 G 124 1_555 hydrog WATSON-CRICK B C 62 B O2 C 62 1_555 B G 124 B N2 G 124 1_555 hydrog WATSON-CRICK B C 63 B N3 C 63 1_555 B G 123 B N1 G 123 1_555 hydrog WATSON-CRICK B C 63 B N4 C 63 1_555 B G 123 B O6 G 123 1_555 hydrog WATSON-CRICK B C 63 B O2 C 63 1_555 B G 123 B N2 G 123 1_555 hydrog WATSON-CRICK B U 64 B N3 U 64 1_555 B A 122 B N1 A 122 1_555 hydrog WATSON-CRICK B U 64 B O4 U 64 1_555 B A 122 B N6 A 122 1_555 hydrog WATSON-CRICK B G 65 B N1 G 65 1_555 B C 121 B N3 C 121 1_555 hydrog WATSON-CRICK B G 65 B N2 G 65 1_555 B C 121 B O2 C 121 1_555 hydrog WATSON-CRICK B G 65 B O6 G 65 1_555 B C 121 B N4 C 121 1_555 hydrog WATSON-CRICK B C 66 B N3 C 66 1_555 B G 120 B N1 G 120 1_555 hydrog WATSON-CRICK B C 66 B N4 C 66 1_555 B G 120 B O6 G 120 1_555 hydrog WATSON-CRICK B C 66 B O2 C 66 1_555 B G 120 B N2 G 120 1_555 hydrog G-U MISPAIR B G 71 B N2 G 71 1_555 B U 72 B O4 U 72 1_555 hydrog TYPE_11_PAIR B A 76 B N6 A 76 1_555 B G 118 B N3 G 118 1_555 hydrog TYPE_11_PAIR B A 76 B N7 A 76 1_555 B G 118 B N2 G 118 1_555 hydrog WATSON-CRICK B G 77 B N1 G 77 1_555 B C 117 B N3 C 117 1_555 hydrog WATSON-CRICK B G 77 B N2 G 77 1_555 B C 117 B O2 C 117 1_555 hydrog WATSON-CRICK B G 77 B O6 G 77 1_555 B C 117 B N4 C 117 1_555 hydrog WATSON-CRICK B G 78 B N1 G 78 1_555 B C 116 B N3 C 116 1_555 hydrog WATSON-CRICK B G 78 B N2 G 78 1_555 B C 116 B O2 C 116 1_555 hydrog WATSON-CRICK B G 78 B O6 G 78 1_555 B C 116 B N4 C 116 1_555 hydrog WATSON-CRICK B A 79 B N1 A 79 1_555 B U 115 B N3 U 115 1_555 hydrog WATSON-CRICK B A 79 B N6 A 79 1_555 B U 115 B O4 U 115 1_555 hydrog WATSON-CRICK B C 80 B N3 C 80 1_555 B G 114 B N1 G 114 1_555 hydrog WATSON-CRICK B C 80 B N4 C 80 1_555 B G 114 B O6 G 114 1_555 hydrog WATSON-CRICK B C 80 B O2 C 80 1_555 B G 114 B N2 G 114 1_555 hydrog WATSON-CRICK B U 81 B N3 U 81 1_555 B A 113 B N1 A 113 1_555 hydrog WATSON-CRICK B U 81 B O4 U 81 1_555 B A 113 B N6 A 113 1_555 hydrog WATSON-CRICK B G 82 B N1 G 82 1_555 B C 112 B N3 C 112 1_555 hydrog WATSON-CRICK B G 82 B N2 G 82 1_555 B C 112 B O2 C 112 1_555 hydrog WATSON-CRICK B G 82 B O6 G 82 1_555 B C 112 B N4 C 112 1_555 hydrog G-A MISPAIR B G 83 B N2 G 83 1_555 B A 110 B N7 A 110 1_555 hydrog REVERSED HOOGSTEEN B A 86 B N6 A 86 1_555 B U 107 B O2 U 107 1_555 hydrog REVERSED HOOGSTEEN B A 86 B N7 A 86 1_555 B U 107 B N3 U 107 1_555 hydrog TYPE_5_PAIR B A 87 B N6 A 87 1_555 B A 106 B N1 A 106 1_555 hydrog TYPE_5_PAIR B A 87 B N7 A 87 1_555 B A 106 B N6 A 106 1_555 hydrog TYPE_25_PAIR B A 88 B N6 A 88 1_555 B C 105 B N3 C 105 1_555 hydrog TYPE_25_PAIR B A 88 B N7 A 88 1_555 B C 105 B N4 C 105 1_555 hydrog WATSON-CRICK B C 89 B N3 C 89 1_555 B G 104 B N1 G 104 1_555 hydrog WATSON-CRICK B C 89 B N4 C 89 1_555 B G 104 B O6 G 104 1_555 hydrog WATSON-CRICK B C 89 B O2 C 89 1_555 B G 104 B N2 G 104 1_555 hydrog WATSON-CRICK B C 90 B N3 C 90 1_555 B G 103 B N1 G 103 1_555 hydrog WATSON-CRICK B C 90 B N4 C 90 1_555 B G 103 B O6 G 103 1_555 hydrog WATSON-CRICK B C 90 B O2 C 90 1_555 B G 103 B N2 G 103 1_555 hydrog WATSON-CRICK B A 91 B N1 A 91 1_555 B U 102 B N3 U 102 1_555 hydrog WATSON-CRICK B A 91 B N6 A 91 1_555 B U 102 B O4 U 102 1_555 hydrog WATSON-CRICK B C 92 B N3 C 92 1_555 B G 101 B N1 G 101 1_555 hydrog WATSON-CRICK B C 92 B N4 C 92 1_555 B G 101 B O6 G 101 1_555 hydrog WATSON-CRICK B C 92 B O2 C 92 1_555 B G 101 B N2 G 101 1_555 hydrog WATSON-CRICK B A 93 B N1 A 93 1_555 B U 100 B N3 U 100 1_555 hydrog WATSON-CRICK B A 93 B N6 A 93 1_555 B U 100 B O4 U 100 1_555 hydrog WATSON-CRICK B G 94 B N1 G 94 1_555 B C 99 B N3 C 99 1_555 hydrog WATSON-CRICK B G 94 B N2 G 94 1_555 B C 99 B O2 C 99 1_555 hydrog WATSON-CRICK B G 94 B O6 G 94 1_555 B C 99 B N4 C 99 1_555 hydrog G-A MISPAIR B G 95 B N2 G 95 1_555 B A 98 B N7 A 98 1_555 RNA glmS ribozyme fold, RNA, self-cleavage, transesterification, metalloribozyme 4MEG PDB 1 4MEG AGCGCCUGGACUUAAAGCCAUUGCACU 4MEG PDB 2 4MEG GGCGGCUUUAAGUUGACGAGGGCAGGGUUAAACGAGACAUCGGCGAGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGAC UGGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA 0 26 4MEG 0 26 4MEG A 1 1 27 1 126 4MEG 1 126 4MEG B 2 1 126 BINDING SITE FOR RESIDUE MG B 201 B MG 201 Software 5 BINDING SITE FOR RESIDUE MG B 202 B MG 202 Software 1 BINDING SITE FOR RESIDUE MG B 203 B MG 203 Software 1 BINDING SITE FOR RESIDUE MG B 204 B MG 204 Software 3 BINDING SITE FOR RESIDUE MG B 205 B MG 205 Software 2 BINDING SITE FOR RESIDUE MG B 206 B MG 206 Software 2 BINDING SITE FOR RESIDUE MG B 207 B MG 207 Software 3 BINDING SITE FOR RESIDUE MG B 208 B MG 208 Software 5 BINDING SITE FOR RESIDUE MG B 209 B MG 209 Software 2 BINDING SITE FOR RESIDUE MG B 210 B MG 210 Software 2 BINDING SITE FOR RESIDUE MG B 211 B MG 211 Software 4 BINDING SITE FOR RESIDUE MG B 212 B MG 212 Software 3 BINDING SITE FOR RESIDUE MG B 213 B MG 213 Software 3 BINDING SITE FOR RESIDUE MG B 214 B MG 214 Software 4 BINDING SITE FOR RESIDUE MG B 215 B MG 215 Software 2 A G 1 A G 2 5 1_555 A C 2 A C 3 5 1_555 B A 16 B A 16 5 1_555 B C 17 B C 17 5 1_555 B G 18 B G 18 5 1_555 B C 59 B C 59 1 1_555 B G 54 B G 54 1 1_555 B A 85 B A 85 3 1_555 B A 86 B A 86 3 1_555 B U 107 B U 107 3 1_555 B G 101 B G 101 2 1_555 B U 102 B U 102 2 1_555 B A 87 B A 87 2 1_555 B G 104 B G 104 2 1_555 B G 75 B G 75 3 1_555 B G 118 B G 118 3 1_555 B G 119 B G 119 3 1_555 B C 89 B C 89 5 3_444 B C 90 B C 90 5 3_444 B U 102 B U 102 5 1_555 B G 104 B G 104 5 3_444 B C 105 B C 105 5 3_444 B U 84 B U 84 2 1_555 B A 85 B A 85 2 1_555 B G 67 B G 67 2 1_555 B A 68 B A 68 2 1_555 B A 85 B A 85 4 1_555 B A 108 B A 108 4 1_555 B G 109 B G 109 4 1_555 B HOH 301 S HOH 4 1_555 B A 16 B A 16 3 1_555 B C 41 B C 41 3 1_555 B G 42 B G 42 3 1_555 B G 43 B G 43 3 1_555 B G 54 B G 54 3 3_455 B C 66 B C 66 3 3_455 B G 20 B G 20 4 1_555 B G 21 B G 21 4 1_555 B A 31 B A 31 4 1_555 B U 48 B U 48 4 1_555 B G 120 B G 120 2 1_555 B C 121 B C 121 2 1_555 18 P 21 21 2