0.005621 0.000000 0.000000 0.000000 0.024290 0.000000 0.000000 0.000000 0.013184 0.00000 0.00000 0.00000 Lau, M.W.L. Ferre-D'Amare, A.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 177.910 41.170 75.850 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking Ca 2 40.078 CALCIUM ION non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N CA N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C Y 90 N C N 91 N N Y 92 N N Y 93 N C Y 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 R C N 121 N O N 122 R C Y 123 N N Y 124 N C Y 125 N N Y 126 N C N 127 N C N 128 N O N 129 N N N 130 N C N 131 N N N 132 N N Y 133 N C N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N O N 149 N H N 150 N H N 151 N O N 152 N P N 153 N O N 154 N O N 155 N O N 156 N C N 157 R C N 158 N O N 159 S C N 160 N O N 161 R C N 162 N O N 163 R C N 164 N N N 165 N C N 166 N O N 167 N N N 168 N C N 169 N O N 170 N C N 171 N C N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing Y 99 N sing Y 100 N sing Y 101 N doub N 102 N sing Y 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N doub N 108 N sing N 109 N sing Y 110 N sing Y 111 N doub N 112 N sing Y 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing Y 138 N sing Y 139 N sing Y 140 N doub N 141 N sing Y 142 N sing N 143 N sing Y 144 N doub N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N doub N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N doub N 189 N sing N 190 N sing US Nat.Chem.Biol. 1552-4450 9 805 810 10.1038/nchembio.1360 24096303 An in vitro evolved glmS ribozyme has the wild-type fold but loses coenzyme dependence. 2013 10.2210/pdb4meh/pdb pdb_00004meh 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 5.0.2 ALS 1.0000 SYNCHROTRON ALS BEAMLINE 5.0.2 8593.168 glmS triple mutant ribozyme 1 syn polymer 40951.414 (122-MER) ribozyme 1 syn polymer 40.078 CALCIUM ION 9 syn non-polymer 18.015 water 2 nat water no no (DA)GCGCCUGGACUUAAAGCCAUUGCACU AGCGCCUGGACUUAAAGCCAUUGCACU A polyribonucleotide no no GGCGGCUUUAAGUUGACGAGGGCAGGGUUAAACGAGACAUCGGCGAGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGAC UGGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA GGCGGCUUUAAGUUGACGAGGGCAGGGUUAAACGAGACAUCGGCGAGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGAC UGGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.80 56.12 VAPOR DIFFUSION, HANGING DROP 6.5 10% PEG 8000, 1 M lithium chloride, 50mM magnesium acetate, 50mM calcium chloride, 1mM spermine, 50mM cacodylate, 50mM HEPES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K 294 1.515 1 19 A 2 B 45 1.931 A_C2:G45_B 1 -2.449 -0.188 -0.152 -0.011 2.204 1 19 A 3 B 44 2.037 A_G3:C44_B 2 -4.324 -0.130 0.036 -0.224 -1.932 1 19 A 4 B 43 7.246 A_C4:G43_B 3 -4.767 0.983 -0.088 -0.110 -5.191 1 19 A 5 B 42 1.207 A_C5:G42_B 4 -0.313 -0.218 0.030 -0.023 -11.582 1 19 A 7 B 41 3.098 A_G7:C41_B 5 -6.015 0.135 -0.533 -0.081 18.720 A 8 B 14 -17.750 A_G8:U14_B 6 -15.300 -1.908 -0.134 -0.208 19.319 1 20 A 9 B 13 -1.578 A_A9:U13_B 7 -18.835 0.684 0.383 -0.028 7.403 1 19 A 10 B 12 3.692 A_C10:G12_B 8 -19.910 0.232 0.010 -0.063 -6.919 1 20 A 11 B 11 -4.098 A_U11:A11_B 9 -13.439 0.112 0.218 -0.097 1.936 1 20 A 12 B 10 2.343 A_U12:A10_B 10 -10.929 0.277 0.191 -0.039 -0.427 1 20 A 13 B 9 1.267 A_A13:U9_B 11 -17.153 0.015 -0.247 0.032 -2.078 1 20 A 14 B 8 -3.328 A_A14:U8_B 12 -22.496 0.340 -0.486 0.266 8.154 1 20 A 15 B 7 6.900 A_A15:U7_B 13 -3.013 1.183 0.413 0.107 -1.055 1 19 A 16 B 6 3.429 A_G16:C6_B 14 -0.786 0.478 -0.537 0.244 -7.019 A 18 B 4 11.356 A_C18:G4_B 15 12.123 -1.525 -0.773 1.173 8.343 2 21 B 40 B 35 -165.158 B_U40:A35_B 16 -7.011 -0.314 0.295 -0.711 -17.640 1 19 B 17 B 34 4.019 B_C17:G34_B 17 2.655 0.292 0.070 0.036 5.617 1 19 B 18 B 33 -8.341 B_G18:C33_B 18 -3.201 -0.181 0.093 -0.338 15.591 6 B 19 B 109 -113.365 B_A19:G109_B 19 47.130 -0.719 0.185 -8.487 9.048 1 28 B 49 B 28 -18.261 B_G49:U28_B 20 -1.380 -2.313 0.474 -0.335 10.909 B 50 B 27 5.761 B_C50:G27_B 21 -24.552 -2.168 -0.152 0.411 -1.635 1 19 B 51 B 26 2.730 B_C51:G26_B 22 -14.280 0.784 0.474 -0.120 4.352 1 19 B 52 B 25 -1.402 B_C52:G25_B 23 -7.238 0.209 -0.214 -0.248 4.745 1 20 B 53 B 24 1.005 B_U53:A24_B 24 -5.876 -0.863 -0.132 -0.198 1.224 1 19 B 54 B 23 -0.989 B_G54:C23_B 25 -13.073 1.349 0.356 0.008 -3.278 1 19 B 56 B 70 1.477 B_G56:C70_B 26 -31.419 0.305 0.091 0.047 -3.246 1 19 B 57 B 69 8.223 B_G57:C69_B 27 -2.658 -0.777 0.811 -0.168 -4.283 1 20 B 58 B 68 -0.963 B_U58:A68_B 28 -14.499 1.132 0.662 -0.016 6.436 1 19 B 59 B 67 -4.566 B_C59:G67_B 29 -8.726 -0.982 0.044 0.241 -4.769 1 B 120 B 66 10.909 B_G120:C66_B 30 -16.760 -0.642 -0.369 0.249 4.426 1 19 B 121 B 65 -1.518 B_C121:G65_B 31 -14.003 0.678 -0.485 -0.083 0.838 1 20 B 122 B 64 9.553 B_A122:U64_B 32 -17.025 -0.668 0.161 0.009 -5.410 1 B 123 B 63 -8.238 B_G123:C63_B 33 -15.601 -0.171 -0.462 0.324 7.551 1 B 124 B 62 6.955 B_G124:C62_B 34 12.985 1.379 0.183 0.508 2.435 10 11 B 76 B 118 -6.557 B_A76:G118_B 35 -22.861 -6.746 0.140 -3.717 -8.317 1 19 B 77 B 117 6.081 B_G77:C117_B 36 -16.022 -0.061 -0.538 0.080 -4.939 1 B 78 B 116 5.194 B_G78:C116_B 37 -5.453 -1.662 -0.318 -0.164 2.735 1 20 B 79 B 115 -6.931 B_A79:U115_B 38 -10.272 -0.586 -0.364 -0.206 6.041 1 19 B 80 B 114 4.113 B_C80:G114_B 39 -22.546 0.229 -0.571 -0.421 -8.357 1 B 81 B 113 15.692 B_U81:A113_B 40 -15.463 -0.075 0.842 0.412 -7.946 1 19 B 82 B 112 -4.836 B_G82:C112_B 41 -15.006 0.368 0.276 0.210 -10.382 B 83 B 110 -48.946 B_G83:A110_B 42 -14.319 7.780 0.385 -5.238 1.505 4 24 B 86 B 107 -92.788 B_A86:U107_B 43 -2.966 -3.784 -0.592 -1.806 15.966 4 5 B 87 B 106 -109.551 B_A87:A106_B 44 -8.435 -3.717 -0.075 1.292 20.715 B 88 B 105 -38.946 B_A88:C105_B 45 -23.721 -5.511 -0.445 -2.274 7.005 1 19 B 89 B 104 -0.904 B_C89:G104_B 46 -20.740 -0.170 0.157 -0.163 0.701 1 19 B 90 B 103 0.836 B_C90:G103_B 47 -9.582 0.055 0.556 -0.009 3.725 1 20 B 91 B 102 4.156 B_A91:U102_B 48 -19.839 -0.043 0.409 0.015 7.035 1 19 B 92 B 101 0.405 B_C92:G101_B 49 -20.297 -0.061 0.100 -0.161 -2.998 1 20 B 93 B 100 8.930 B_A93:U100_B 50 -8.185 -0.401 0.200 0.058 3.089 1 19 B 94 B 99 0.652 B_G94:C99_B 51 -0.285 -0.219 -0.051 -0.076 2.384 B 95 B 98 -40.326 B_G95:A98_B 52 -19.119 7.689 1.294 -5.661 2.703 33.593 A A 2 3 11.617 B B 45 44 3.150 6.669 -0.208 -2.045 AA_C2G3:C44G45_BB 1 -1.921 3.346 32.888 -4.526 0.075 3.143 39.247 A A 3 4 8.870 B B 44 43 3.361 5.935 0.372 -1.345 AA_G3C4:G43C44_BB 2 1.892 -2.828 38.769 -2.711 -0.329 2.466 27.446 A A 4 5 19.296 B B 43 42 3.316 8.968 -0.254 -1.914 AA_C4C5:G42G43_BB 3 3.502 -7.535 25.733 -6.054 1.324 2.585 53.709 A A 5 7 14.589 B B 42 41 3.259 13.058 -2.492 -1.903 AA_C5G7:C41G42_BB 4 3.550 -3.966 52.099 -2.848 2.960 2.313 65.537 A A 7 8 -1.495 B B 41 14 3.172 -1.603 3.304 -0.890 AA_G7G8:U14C41_BB 5 -17.427 16.256 63.410 -0.766 -3.664 2.905 45.595 A A 8 9 6.709 B B 14 13 3.187 5.173 0.524 -1.490 AA_G8A9:U13U14_BB 6 -6.648 8.623 44.851 -2.349 -1.224 3.155 33.146 A A 9 10 6.739 B B 13 12 3.348 3.832 0.470 -1.762 AA_A9C10:G12U13_BB 7 2.742 -4.821 32.819 -3.732 -0.362 2.564 31.702 A A 10 11 23.856 B B 12 11 3.558 12.663 -0.956 -2.009 AA_C10U11:A11G12_BB 8 -3.154 5.941 28.955 -5.965 1.181 2.946 34.384 A A 11 12 3.482 B B 11 10 3.020 2.056 0.013 -1.108 AA_U11U12:A10A11_BB 9 -1.808 3.061 34.278 -2.168 -0.279 2.491 35.786 A A 12 13 25.534 B B 10 9 3.254 15.154 -0.338 -0.913 AA_U12A13:U9A10_BB 10 5.721 -9.639 32.018 -3.518 1.317 2.806 32.065 A A 13 14 20.589 B B 9 8 3.430 11.146 -0.274 -1.221 AA_A13A14:U8U9_BB 11 0.625 -1.154 30.107 -4.186 0.606 2.695 35.381 A A 14 15 7.765 B B 8 7 3.004 4.692 0.722 -1.252 AA_A14A15:U7U8_BB 12 -4.866 8.052 34.750 -2.669 -1.819 2.500 31.529 A A 15 16 22.205 B B 7 6 3.475 11.633 0.055 -1.706 AA_A15G16:C6U7_BB 13 8.650 -16.511 28.075 -5.240 1.460 -1.223 -175.854 B B 40 17 40.021 B B 35 34 1.464 -79.103 -3.970 2.029 BB_U40C17:G34A35_BB 14 -155.904 -78.878 -73.516 -0.988 -2.040 2.881 21.964 B B 17 18 3.047 B B 34 33 2.971 1.160 -0.503 -1.144 BB_C17G18:C33G34_BB 15 1.026 -2.694 21.910 -3.403 1.676 2.581 101.687 B B 18 19 -16.222 B B 33 109 3.148 -24.998 -2.394 1.816 BB_G18A19:G109C33_BB 16 10.250 -6.652 99.006 1.508 1.682 2.731 36.199 B B 49 50 15.267 B B 28 27 3.140 9.379 1.612 -1.571 BB_G49C50:G27U28_BB 17 2.127 -3.462 34.939 -3.735 -2.321 3.741 44.874 B B 50 51 4.357 B B 27 26 3.836 3.312 -0.150 -0.960 BB_C50C51:G26G27_BB 18 -6.789 8.933 44.266 -1.608 -0.521 2.132 32.646 B B 51 52 20.890 B B 26 25 2.878 11.461 -0.607 -1.317 BB_C51C52:G25G26_BB 19 4.835 -8.812 30.243 -3.927 1.748 1.770 33.962 B B 52 53 31.040 B B 25 24 2.986 17.319 0.060 -1.634 BB_C52U53:A24G25_BB 20 -1.121 2.010 29.305 -4.974 -0.243 2.863 43.027 B B 53 54 12.955 B B 24 23 3.252 9.425 0.144 -1.440 BB_U53G54:C23A24_BB 21 -2.895 3.980 41.935 -2.846 -0.468 4.861 73.358 B B 54 56 22.816 B B 23 70 6.150 26.768 -0.149 -3.014 BB_G54G56:C70C23_BB 22 -5.149 4.389 68.776 -4.037 -0.167 2.592 29.731 B B 56 57 10.018 B B 70 69 2.957 4.935 -0.584 -1.671 BB_G56G57:C69C70_BB 23 -13.445 27.290 26.123 -4.195 -1.417 3.461 40.543 B B 57 58 3.268 B B 69 68 3.510 2.263 -0.869 -1.402 BB_G57U58:A68C69_BB 24 -1.600 2.311 40.453 -2.293 1.064 2.167 27.737 B B 58 59 18.922 B B 68 67 2.800 8.873 -0.569 -1.132 BB_U58C59:G67A68_BB 25 4.691 -10.003 25.891 -4.045 2.077 3.286 48.191 B B 59 120 8.483 B B 67 66 3.525 6.904 -0.588 -1.353 BB_C59G120:C66G67_BB 26 1.886 -2.317 47.688 -2.222 0.874 3.037 34.737 B B 120 121 3.815 B B 66 65 3.106 2.276 -0.894 -1.004 BB_G120C121:G65C66_BB 27 -0.077 0.129 34.665 -2.009 1.487 1.624 34.457 B B 121 122 38.361 B B 65 64 3.054 21.171 0.733 -1.268 BB_C121A122:U64G65_BB 28 -2.001 3.625 27.271 -4.792 -1.487 2.768 40.488 B B 122 123 18.709 B B 64 63 3.362 12.745 -0.738 -1.437 BB_A122G123:C63U64_BB 29 0.036 -0.053 38.510 -3.449 1.070 2.855 35.200 B B 123 124 5.213 B B 63 62 3.107 3.143 0.852 -1.645 BB_G123G124:C62C63_BB 30 -3.524 5.844 34.891 -3.149 -1.889 3.698 61.411 B B 76 77 11.415 B B 118 117 3.876 11.600 0.668 -0.680 BB_A76G77:C117G118_BB 31 -0.519 0.511 60.409 -1.304 -0.683 1.550 29.420 B B 77 78 33.104 B B 117 116 2.924 15.824 -0.075 -1.654 BB_G77G78:C116C117_BB 32 -5.894 12.330 24.180 -5.815 -0.805 3.223 31.491 B B 78 79 3.172 B B 116 115 3.245 1.720 -0.808 -1.119 BB_G78A79:U115C116_BB 33 -1.897 3.499 31.389 -2.379 1.138 2.973 39.765 B B 79 80 10.369 B B 115 114 3.165 7.015 0.561 -1.014 BB_A79C80:G114U115_BB 34 2.251 -3.327 39.103 -2.262 -0.578 2.529 34.228 B B 80 81 23.234 B B 114 113 3.527 13.268 0.684 -1.512 BB_C80U81:A113G114_BB 35 -5.786 10.133 31.100 -4.604 -2.050 3.104 30.636 B B 81 82 -0.395 B B 113 112 3.218 -0.207 -0.200 -1.781 BB_U81G82:C112A113_BB 36 6.969 -13.301 29.850 -3.330 1.724 3.471 89.599 B B 82 83 0.208 B B 112 110 3.481 0.293 -0.815 -1.685 BB_G82G83:A110C112_BB 37 0.800 -0.568 89.595 -1.202 0.596 3.270 37.833 B B 86 87 -17.407 B B 107 106 2.908 -11.131 -0.753 -1.704 BB_A86A87:A106U107_BB 38 0.147 -0.230 36.215 -1.244 1.179 1.477 39.627 B B 87 88 26.100 B B 106 105 3.058 17.089 3.935 -1.693 BB_A87A88:C105A106_BB 39 -5.834 8.910 35.422 -3.969 -6.306 3.357 63.833 B B 88 89 10.094 B B 105 104 3.761 10.631 2.084 -1.869 BB_A88C89:G104C105_BB 40 -2.727 2.589 62.981 -2.274 -2.100 3.019 32.877 B B 89 90 8.747 B B 104 103 3.325 4.929 0.127 -1.747 BB_C89C90:G103G104_BB 41 -2.233 3.962 32.441 -3.910 -0.598 2.772 37.583 B B 90 91 10.006 B B 103 102 3.004 6.400 0.223 -1.189 BB_C90A91:U102G103_BB 42 4.920 -7.692 36.737 -2.590 0.227 2.671 32.799 B B 91 92 15.123 B B 102 101 3.103 8.442 -0.152 -1.265 BB_A91C92:G101U102_BB 43 2.123 -3.803 31.654 -3.545 0.597 2.214 34.843 B B 92 93 26.275 B B 101 100 3.239 15.232 1.014 -1.639 BB_C92A93:U100G101_BB 44 -0.610 1.053 31.425 -4.774 -1.774 2.691 31.006 B B 93 94 10.406 B B 100 99 3.114 5.531 -0.040 -2.115 BB_A93G94:C99U100_BB 45 1.777 -3.343 30.470 -4.909 0.381 2.601 61.011 B B 94 95 20.728 B B 99 98 3.307 20.698 -4.095 -1.423 BB_G94G95:A98C99_BB 46 1.639 -1.641 57.692 -2.327 4.107 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2013-10-16 1 1 2013-11-27 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2013-08-26 REL REL CA CALCIUM ION HOH water This mutant ribozyme was evolved from the Thermoanaerobacter tengcongensis glmS ribozyme sample 2Z75 PDB entry 2Z75 PDB experimental model CA 307 3 CA CA 101 A CA 302 3 CA CA 201 B CA 303 3 CA CA 202 B CA 301 3 CA CA 203 B CA 201 3 CA CA 204 B CA 202 3 CA CA 205 B CA 204 3 CA CA 206 B CA 306 3 CA CA 207 B CA 308 3 CA CA 208 B HOH 304 4 HOH HOH 301 B HOH 305 4 HOH HOH 302 B G 0 n 1 DA 0 A G 1 n 2 G 1 A C 2 n 3 C 2 A G 3 n 4 G 3 A C 4 n 5 C 4 A C 5 n 6 C 5 A U 6 n 7 U 6 A G 7 n 8 G 7 A G 8 n 9 G 8 A A 9 n 10 A 9 A C 10 n 11 C 10 A U 11 n 12 U 11 A U 12 n 13 U 12 A A 13 n 14 A 13 A A 14 n 15 A 14 A A 15 n 16 A 15 A G 16 n 17 G 16 A C 17 n 18 C 17 A C 18 n 19 C 18 A A 19 n 20 A 19 A U 20 n 21 U 20 A A 21 n 22 U 21 A n 23 22 A n 24 23 A n 25 24 A n 26 25 A n 27 26 A n 1 1 B n 2 2 B n 3 3 B G 23 n 4 G 4 B G 24 n 5 G 5 B C 25 n 6 C 6 B U 26 n 7 U 7 B U 27 n 8 U 8 B U 28 n 9 U 9 B A 29 n 10 A 10 B A 30 n 11 A 11 B G 31 n 12 G 12 B U 32 n 13 U 13 B U 33 n 14 U 14 B G 34 n 15 G 15 B A 35 n 16 A 16 B C 36 n 17 C 17 B G 37 n 18 G 18 B A 38 n 19 A 19 B G 39 n 20 G 20 B G 40 n 21 G 21 B G 41 n 22 G 22 B C 42 n 23 C 23 B A 43 n 24 A 24 B G 44 n 25 G 25 B G 45 n 26 G 26 B G 46 n 27 G 27 B U 47 n 28 U 28 B U 48 n 29 U 29 B A 49 n 30 A 30 B A 50 n 31 A 31 B A 51 n 32 A 32 B C 52 n 33 C 33 B G 53 n 34 G 34 B A 54 n 35 A 35 B G 55 n 36 G 36 B A 56 n 37 A 37 B C 57 n 38 C 38 B A 58 n 39 A 39 B U 59 n 40 U 40 B C 60 n 41 C 41 B G 61 n 42 G 42 B G 62 n 43 G 43 B C 63 n 44 C 44 B G 64 n 45 G 45 B A 65 n 46 A 46 B G 66 n 47 G 47 B U 67 n 48 U 48 B G 68 n 49 G 49 B C 69 n 50 C 50 B C 70 n 51 C 51 B C 71 n 52 C 52 B U 72 n 53 U 53 B G 73 n 54 G 54 B C 74 n 55 C 55 B G 75 n 56 G 56 B G 76 n 57 G 57 B U 77 n 58 U 58 B C 78 n 59 C 59 B n 60 60 B U 80 n 61 U 61 B C 81 n 62 C 62 B C 82 n 63 C 63 B U 83 n 64 U 64 B G 84 n 65 G 65 B C 85 n 66 C 66 B G 86 n 67 G 67 B A 87 n 68 A 68 B C 88 n 69 C 69 B C 89 n 70 C 70 B G 90 n 71 G 71 B U 91 n 72 U 72 B U 92 n 73 U 73 B A 93 n 74 A 74 B G 94 n 75 G 75 B A 95 n 76 A 76 B G 96 n 77 G 77 B G 97 n 78 G 78 B A 98 n 79 A 79 B C 99 n 80 C 80 B U 100 n 81 U 81 B G 101 n 82 G 82 B G 102 n 83 G 83 B U 103 n 84 U 84 B A 104 n 85 A 85 B A 105 n 86 A 86 B A 106 n 87 A 87 B A 107 n 88 A 88 B C 108 n 89 C 89 B C 109 n 90 C 90 B A 110 n 91 A 91 B C 111 n 92 C 92 B A 112 n 93 A 93 B G 113 n 94 G 94 B G 114 n 95 G 95 B C 115 n 96 C 96 B G 116 n 97 G 97 B A 117 n 98 A 98 B C 118 n 99 C 99 B U 119 n 100 U 100 B G 120 n 101 G 101 B U 121 n 102 U 102 B G 122 n 103 G 103 B G 123 n 104 G 104 B C 124 n 105 C 105 B A 125 n 106 A 106 B U 126 n 107 U 107 B A 127 n 108 A 108 B G 128 n 109 G 109 B A 129 n 110 A 110 B G 130 n 111 G 111 B C 131 n 112 C 112 B A 132 n 113 A 113 B G 133 n 114 G 114 B U 134 n 115 U 115 B C 135 n 116 C 116 B C 136 n 117 C 117 B G 137 n 118 G 118 B G 138 n 119 G 119 B G 139 n 120 G 120 B C 140 n 121 C 121 B A 141 n 122 A 122 B G 142 n 123 G 123 B G 143 n 124 G 124 B A 144 n 125 A 125 B A 145 n 126 A 126 B author_and_software_defined_assembly PISA 2 dimeric 3690 -118 21990 A C 2 A OP2 C 3 1_555 B CA 204 G CA CA 1_555 B A 16 B O3' A 16 1_555 136.4 A C 2 A OP2 C 3 1_555 B CA 204 G CA CA 1_555 B C 17 B OP2 C 17 1_555 173.0 B A 16 B O3' A 16 1_555 B CA 204 G CA CA 1_555 B C 17 B OP2 C 17 1_555 50.3 A C 2 A OP2 C 3 1_555 B CA 204 G CA CA 1_555 B G 18 B OP2 G 18 1_555 88.1 B A 16 B O3' A 16 1_555 B CA 204 G CA CA 1_555 B G 18 B OP2 G 18 1_555 112.0 B C 17 B OP2 C 17 1_555 B CA 204 G CA CA 1_555 B G 18 B OP2 G 18 1_555 90.5 A C 2 A OP1 C 3 1_555 B CA 206 I CA CA 1_555 B G 20 B O6 G 20 1_555 116.3 B G 22 B OP2 G 22 1_555 B CA 203 F CA CA 1_555 B U 48 B O2 U 48 1_555 141.1 B G 22 B OP2 G 22 1_555 B CA 203 F CA CA 1_555 B U 48 B O2' U 48 1_555 105.6 B U 48 B O2 U 48 1_555 B CA 203 F CA CA 1_555 B U 48 B O2' U 48 1_555 91.6 B C 41 B OP2 C 41 1_555 B CA 202 E CA CA 1_555 B C 41 B OP1 C 41 1_555 54.4 B C 41 B OP2 C 41 1_555 B CA 202 E CA CA 1_555 B G 42 B OP2 G 42 1_555 101.8 B C 41 B OP1 C 41 1_555 B CA 202 E CA CA 1_555 B G 42 B OP2 G 42 1_555 97.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A O5' DA 0 A O5' DA 1 1 Y 1 A C5' DA 0 A C5' DA 1 1 Y 1 A C4' DA 0 A C4' DA 1 1 Y 1 A O4' DA 0 A O4' DA 1 1 Y 1 A C3' DA 0 A C3' DA 1 1 Y 1 A C2' DA 0 A C2' DA 1 1 Y 1 A C1' DA 0 A C1' DA 1 1 Y 1 A N9 DA 0 A N9 DA 1 1 Y 1 A C8 DA 0 A C8 DA 1 1 Y 1 A N7 DA 0 A N7 DA 1 1 Y 1 A C5 DA 0 A C5 DA 1 1 Y 1 A C6 DA 0 A C6 DA 1 1 Y 1 A N6 DA 0 A N6 DA 1 1 Y 1 A N1 DA 0 A N1 DA 1 1 Y 1 A C2 DA 0 A C2 DA 1 1 Y 1 A N3 DA 0 A N3 DA 1 1 Y 1 A C4 DA 0 A C4 DA 1 1 Y 1 A N1 U 6 A N1 U 7 1 Y 1 A C2 U 6 A C2 U 7 1 Y 1 A O2 U 6 A O2 U 7 1 Y 1 A N3 U 6 A N3 U 7 1 Y 1 A C4 U 6 A C4 U 7 1 Y 1 A O4 U 6 A O4 U 7 1 Y 1 A C5 U 6 A C5 U 7 1 Y 1 A C6 U 6 A C6 U 7 1 Y 1 A C5' U 21 A C5' U 22 1 Y 1 A C4' U 21 A C4' U 22 1 Y 1 A O4' U 21 A O4' U 22 1 Y 1 A C3' U 21 A C3' U 22 1 Y 1 A O3' U 21 A O3' U 22 1 Y 1 A C2' U 21 A C2' U 22 1 Y 1 A O2' U 21 A O2' U 22 1 Y 1 A C1' U 21 A C1' U 22 1 Y 1 A N1 U 21 A N1 U 22 1 Y 1 A C2 U 21 A C2 U 22 1 Y 1 A O2 U 21 A O2 U 22 1 Y 1 A N3 U 21 A N3 U 22 1 Y 1 A C4 U 21 A C4 U 22 1 Y 1 A O4 U 21 A O4 U 22 1 Y 1 A C5 U 21 A C5 U 22 1 Y 1 A C6 U 21 A C6 U 22 1 Y 1 B N1 U 29 B N1 U 29 1 Y 1 B C2 U 29 B C2 U 29 1 Y 1 B O2 U 29 B O2 U 29 1 Y 1 B N3 U 29 B N3 U 29 1 Y 1 B C4 U 29 B C4 U 29 1 Y 1 B O4 U 29 B O4 U 29 1 Y 1 B C5 U 29 B C5 U 29 1 Y 1 B C6 U 29 B C6 U 29 1 Y 1 B C5' A 31 B C5' A 31 1 Y 1 B C4' A 31 B C4' A 31 1 Y 1 B O4' A 31 B O4' A 31 1 Y 1 B C3' A 31 B C3' A 31 1 Y 1 B O3' A 31 B O3' A 31 1 Y 1 B C2' A 31 B C2' A 31 1 Y 1 B O2' A 31 B O2' A 31 1 Y 1 B C1' A 31 B C1' A 31 1 Y 1 B N9 A 31 B N9 A 31 1 Y 1 B C8 A 31 B C8 A 31 1 Y 1 B N7 A 31 B N7 A 31 1 Y 1 B C5 A 31 B C5 A 31 1 Y 1 B C6 A 31 B C6 A 31 1 Y 1 B N6 A 31 B N6 A 31 1 Y 1 B N1 A 31 B N1 A 31 1 Y 1 B C2 A 31 B C2 A 31 1 Y 1 B N3 A 31 B N3 A 31 1 Y 1 B C4 A 31 B C4 A 31 1 Y 1 B N9 G 111 B N9 G 111 1 Y 1 B C8 G 111 B C8 G 111 1 Y 1 B N7 G 111 B N7 G 111 1 Y 1 B C5 G 111 B C5 G 111 1 Y 1 B C6 G 111 B C6 G 111 1 Y 1 B O6 G 111 B O6 G 111 1 Y 1 B N1 G 111 B N1 G 111 1 Y 1 B C2 G 111 B C2 G 111 1 Y 1 B N2 G 111 B N2 G 111 1 Y 1 B N3 G 111 B N3 G 111 1 Y 1 B C4 G 111 B C4 G 111 1 Y 1 B C5' A 126 B C5' A 126 1 Y 1 B C4' A 126 B C4' A 126 1 Y 1 B O4' A 126 B O4' A 126 1 Y 1 B C3' A 126 B C3' A 126 1 Y 1 B O3' A 126 B O3' A 126 1 Y 1 B C2' A 126 B C2' A 126 1 Y 1 B O2' A 126 B O2' A 126 1 Y 1 B C1' A 126 B C1' A 126 1 Y 1 B N9 A 126 B N9 A 126 1 Y 1 B C8 A 126 B C8 A 126 1 Y 1 B N7 A 126 B N7 A 126 1 Y 1 B C5 A 126 B C5 A 126 1 Y 1 B C6 A 126 B C6 A 126 1 Y 1 B N6 A 126 B N6 A 126 1 Y 1 B N1 A 126 B N1 A 126 1 Y 1 B C2 A 126 B C2 A 126 1 Y 1 B N3 A 126 B N3 A 126 1 Y 1 B C4 A 126 B C4 A 126 1 Y 1 A G 22 A G 23 1 Y 1 A C 23 A C 24 1 Y 1 A A 24 A A 25 1 Y 1 A C 25 A C 26 1 Y 1 A U 26 A U 27 1 Y 1 B G 1 B G 1 1 Y 1 B G 2 B G 2 1 Y 1 B C 3 B C 3 1 Y 1 B U 60 B U 60 1 Y 1 8.10 1.30 114.00 122.10 B B B N9 C1' C2' G G G 36 36 36 N 1 8.84 1.30 114.00 122.84 B B B N9 C1' C2' A A A 39 39 39 N 1 A A O3' P DA G 0 1 -0.081 0.012 1.607 1.526 Y protein_rep.param protein.top dna-rna_rep.param dna-rna.top water_rep.param water.top ion.param ion.top 106.0 1.26 0.00 0.00 -20.43 0.00 19.17 BULK SOLVENT MODEL USED 0.273 0.010 0.231 0.231 0.231 3.12 28.86 747 9861 9861 7.6 93.6 RANDOM 77407.68 0.000000 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT PDB entry 2Z75 Engh & Huber FLAT MODEL 35.396 0.25 0.41 0.37 5.00 0.05 3.12 28.86 2 3007 9 2996 0 0.004 0.9 14.1 1.36 0.222 3.29 77.0 3.1 30 4MEH 9873 0 3.2 0.027 1 23.6 4.1 96.9 1.123 3.1 3.15 3.2 476 1 4.1 96.1 data collection HKL-2000 phasing PHASER refinement CNS 1.2 data reduction HKL-2000 data scaling HKL-2000 In vitro evolved glmS ribozyme triple mutant, calcium ion complex 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N metalc 2.812 A G 1 A OP1 G 2 1_555 A CA 101 C CA CA 1_555 metalc 2.475 A C 2 A OP2 C 3 1_555 B CA 204 G CA CA 1_555 metalc 2.159 A C 2 A OP1 C 3 1_555 B CA 206 I CA CA 1_555 metalc 3.124 B A 16 B O3' A 16 1_555 B CA 204 G CA CA 1_555 metalc 2.681 B C 17 B OP2 C 17 1_555 B CA 204 G CA CA 1_555 metalc 2.512 B G 18 B OP2 G 18 1_555 B CA 204 G CA CA 1_555 metalc 2.344 B G 20 B O6 G 20 1_555 B CA 206 I CA CA 1_555 metalc 2.606 B G 22 B OP2 G 22 1_555 B CA 203 F CA CA 1_555 metalc 2.630 B C 41 B OP2 C 41 1_555 B CA 202 E CA CA 1_555 metalc 2.947 B C 41 B OP1 C 41 1_555 B CA 202 E CA CA 1_555 metalc 2.871 B G 42 B OP2 G 42 1_555 B CA 202 E CA CA 1_555 metalc 2.282 B U 48 B OP2 U 48 1_555 B CA 201 D CA CA 1_555 metalc 2.264 B U 48 B O2 U 48 1_555 B CA 203 F CA CA 1_555 metalc 2.565 B U 48 B O2' U 48 1_555 B CA 203 F CA CA 1_555 metalc 3.062 B C 50 B O2 C 50 1_555 B CA 207 J CA CA 1_555 metalc 2.774 B G 54 B OP1 G 54 1_555 B CA 208 K CA CA 1_555 hydrog WATSON-CRICK A C 2 A N3 C 3 1_555 B G 45 B N1 G 45 1_555 hydrog WATSON-CRICK A C 2 A N4 C 3 1_555 B G 45 B O6 G 45 1_555 hydrog WATSON-CRICK A C 2 A O2 C 3 1_555 B G 45 B N2 G 45 1_555 hydrog WATSON-CRICK A G 3 A N1 G 4 1_555 B C 44 B N3 C 44 1_555 hydrog WATSON-CRICK A G 3 A N2 G 4 1_555 B C 44 B O2 C 44 1_555 hydrog WATSON-CRICK A G 3 A O6 G 4 1_555 B C 44 B N4 C 44 1_555 hydrog WATSON-CRICK A C 4 A N3 C 5 1_555 B G 43 B N1 G 43 1_555 hydrog WATSON-CRICK A C 4 A N4 C 5 1_555 B G 43 B O6 G 43 1_555 hydrog WATSON-CRICK A C 4 A O2 C 5 1_555 B G 43 B N2 G 43 1_555 hydrog WATSON-CRICK A C 5 A N3 C 6 1_555 B G 42 B N1 G 42 1_555 hydrog WATSON-CRICK A C 5 A N4 C 6 1_555 B G 42 B O6 G 42 1_555 hydrog WATSON-CRICK A C 5 A O2 C 6 1_555 B G 42 B N2 G 42 1_555 hydrog G-G MISPAIR A G 7 A O6 G 8 1_555 B G 15 B N2 G 15 1_555 hydrog WATSON-CRICK A G 7 A N1 G 8 1_555 B C 41 B N3 C 41 1_555 hydrog WATSON-CRICK A G 7 A N2 G 8 1_555 B C 41 B O2 C 41 1_555 hydrog WATSON-CRICK A G 7 A O6 G 8 1_555 B C 41 B N4 C 41 1_555 hydrog G-U MISPAIR A G 8 A O6 G 9 1_555 B U 14 B N3 U 14 1_555 hydrog G-A MISPAIR A G 8 A N2 G 9 1_555 B A 39 B N3 A 39 1_555 hydrog WATSON-CRICK A A 9 A N1 A 10 1_555 B U 13 B N3 U 13 1_555 hydrog WATSON-CRICK A A 9 A N6 A 10 1_555 B U 13 B O4 U 13 1_555 hydrog WATSON-CRICK A C 10 A N3 C 11 1_555 B G 12 B N1 G 12 1_555 hydrog WATSON-CRICK A C 10 A N4 C 11 1_555 B G 12 B O6 G 12 1_555 hydrog WATSON-CRICK A C 10 A O2 C 11 1_555 B G 12 B N2 G 12 1_555 hydrog WATSON-CRICK A U 11 A N3 U 12 1_555 B A 11 B N1 A 11 1_555 hydrog WATSON-CRICK A U 11 A O4 U 12 1_555 B A 11 B N6 A 11 1_555 hydrog U-G MISPAIR A U 11 A O2 U 12 1_555 B G 97 B N2 G 97 1_555 hydrog WATSON-CRICK A U 12 A N3 U 13 1_555 B A 10 B N1 A 10 1_555 hydrog WATSON-CRICK A U 12 A O4 U 13 1_555 B A 10 B N6 A 10 1_555 hydrog WATSON-CRICK A A 13 A N1 A 14 1_555 B U 9 B N3 U 9 1_555 hydrog WATSON-CRICK A A 13 A N6 A 14 1_555 B U 9 B O4 U 9 1_555 hydrog WATSON-CRICK A A 14 A N1 A 15 1_555 B U 8 B N3 U 8 1_555 hydrog WATSON-CRICK A A 14 A N6 A 15 1_555 B U 8 B O4 U 8 1_555 hydrog WATSON-CRICK A A 15 A N1 A 16 1_555 B U 7 B N3 U 7 1_555 hydrog WATSON-CRICK A A 15 A N6 A 16 1_555 B U 7 B O4 U 7 1_555 hydrog WATSON-CRICK A G 16 A N1 G 17 1_555 B C 6 B N3 C 6 1_555 hydrog WATSON-CRICK A G 16 A N2 G 17 1_555 B C 6 B O2 C 6 1_555 hydrog WATSON-CRICK A G 16 A O6 G 17 1_555 B C 6 B N4 C 6 1_555 hydrog C-G PAIR A C 18 A N3 C 19 1_555 B G 4 B N2 G 4 1_555 hydrog G-A MISPAIR B G 12 B N2 G 12 1_555 B A 98 B N3 A 98 1_555 hydrog A-C MISPAIR B A 16 B N3 A 16 1_555 B C 17 B N4 C 17 1_555 hydrog WATSON-CRICK B C 17 B N3 C 17 1_555 B G 34 B N1 G 34 1_555 hydrog WATSON-CRICK B C 17 B N4 C 17 1_555 B G 34 B O6 G 34 1_555 hydrog WATSON-CRICK B C 17 B O2 C 17 1_555 B G 34 B N2 G 34 1_555 hydrog WATSON-CRICK B G 18 B N1 G 18 1_555 B C 33 B N3 C 33 1_555 hydrog WATSON-CRICK B G 18 B N2 G 18 1_555 B C 33 B O2 C 33 1_555 hydrog WATSON-CRICK B G 18 B O6 G 18 1_555 B C 33 B N4 C 33 1_555 hydrog G-A MISPAIR B G 18 B N2 G 18 1_555 B A 108 B N1 A 108 1_555 hydrog A-G MISPAIR B A 19 B N3 A 19 1_555 B G 109 B N2 G 109 1_555 hydrog WATSON-CRICK B C 23 B N3 C 23 1_555 B G 54 B N1 G 54 1_555 hydrog WATSON-CRICK B C 23 B N4 C 23 1_555 B G 54 B O6 G 54 1_555 hydrog WATSON-CRICK B C 23 B O2 C 23 1_555 B G 54 B N2 G 54 1_555 hydrog C-G PAIR B C 23 B N4 C 23 1_555 B G 71 B O6 G 71 1_555 hydrog WATSON-CRICK B A 24 B N1 A 24 1_555 B U 53 B N3 U 53 1_555 hydrog WATSON-CRICK B A 24 B N6 A 24 1_555 B U 53 B O4 U 53 1_555 hydrog WATSON-CRICK B G 25 B N1 G 25 1_555 B C 52 B N3 C 52 1_555 hydrog WATSON-CRICK B G 25 B N2 G 25 1_555 B C 52 B O2 C 52 1_555 hydrog WATSON-CRICK B G 25 B O6 G 25 1_555 B C 52 B N4 C 52 1_555 hydrog WATSON-CRICK B G 26 B N1 G 26 1_555 B C 51 B N3 C 51 1_555 hydrog WATSON-CRICK B G 26 B N2 G 26 1_555 B C 51 B O2 C 51 1_555 hydrog WATSON-CRICK B G 26 B O6 G 26 1_555 B C 51 B N4 C 51 1_555 hydrog G-C PAIR B G 27 B N2 G 27 1_555 B C 50 B N3 C 50 1_555 hydrog TYPE_28_PAIR B U 28 B N3 U 28 1_555 B G 49 B O6 G 49 1_555 hydrog TYPE_28_PAIR B U 28 B O2 U 28 1_555 B G 49 B N1 G 49 1_555 hydrog G-A MISPAIR B G 34 B N2 G 34 1_555 B A 85 B N1 A 85 1_555 hydrog REVERSED WATSON-CRICK B A 35 B N1 A 35 1_555 B U 40 B N3 U 40 1_555 hydrog REVERSED WATSON-CRICK B A 35 B N6 A 35 1_555 B U 40 B O2 U 40 1_555 hydrog WATSON-CRICK B G 56 B N1 G 56 1_555 B C 70 B N3 C 70 1_555 hydrog WATSON-CRICK B G 56 B N2 G 56 1_555 B C 70 B O2 C 70 1_555 hydrog WATSON-CRICK B G 56 B O6 G 56 1_555 B C 70 B N4 C 70 1_555 hydrog G-A MISPAIR B G 56 B N2 G 56 1_555 B A 74 B N3 A 74 1_555 hydrog WATSON-CRICK B G 57 B N1 G 57 1_555 B C 69 B N3 C 69 1_555 hydrog WATSON-CRICK B G 57 B N2 G 57 1_555 B C 69 B O2 C 69 1_555 hydrog WATSON-CRICK B G 57 B O6 G 57 1_555 B C 69 B N4 C 69 1_555 hydrog WATSON-CRICK B U 58 B N3 U 58 1_555 B A 68 B N1 A 68 1_555 hydrog WATSON-CRICK B U 58 B O4 U 58 1_555 B A 68 B N6 A 68 1_555 hydrog WATSON-CRICK B C 59 B N3 C 59 1_555 B G 67 B N1 G 67 1_555 hydrog WATSON-CRICK B C 59 B N4 C 59 1_555 B G 67 B O6 G 67 1_555 hydrog WATSON-CRICK B C 59 B O2 C 59 1_555 B G 67 B N2 G 67 1_555 hydrog C-G PAIR B C 62 B O2 C 62 1_555 B G 124 B N2 G 124 1_555 hydrog C-G PAIR B C 63 B N4 C 63 1_555 B G 123 B O6 G 123 1_555 hydrog WATSON-CRICK B U 64 B N3 U 64 1_555 B A 122 B N1 A 122 1_555 hydrog WATSON-CRICK B U 64 B O4 U 64 1_555 B A 122 B N6 A 122 1_555 hydrog WATSON-CRICK B G 65 B N1 G 65 1_555 B C 121 B N3 C 121 1_555 hydrog WATSON-CRICK B G 65 B N2 G 65 1_555 B C 121 B O2 C 121 1_555 hydrog WATSON-CRICK B G 65 B O6 G 65 1_555 B C 121 B N4 C 121 1_555 hydrog C-G PAIR B C 66 B O2 C 66 1_555 B G 120 B N2 G 120 1_555 hydrog TYPE_11_PAIR B A 76 B N6 A 76 1_555 B G 118 B N3 G 118 1_555 hydrog TYPE_11_PAIR B A 76 B N7 A 76 1_555 B G 118 B N2 G 118 1_555 hydrog WATSON-CRICK B G 77 B N1 G 77 1_555 B C 117 B N3 C 117 1_555 hydrog WATSON-CRICK B G 77 B N2 G 77 1_555 B C 117 B O2 C 117 1_555 hydrog WATSON-CRICK B G 77 B O6 G 77 1_555 B C 117 B N4 C 117 1_555 hydrog G-C PAIR B G 78 B N1 G 78 1_555 B C 116 B O2 C 116 1_555 hydrog WATSON-CRICK B A 79 B N1 A 79 1_555 B U 115 B N3 U 115 1_555 hydrog WATSON-CRICK B A 79 B N6 A 79 1_555 B U 115 B O4 U 115 1_555 hydrog WATSON-CRICK B C 80 B N3 C 80 1_555 B G 114 B N1 G 114 1_555 hydrog WATSON-CRICK B C 80 B N4 C 80 1_555 B G 114 B O6 G 114 1_555 hydrog WATSON-CRICK B C 80 B O2 C 80 1_555 B G 114 B N2 G 114 1_555 hydrog U-A PAIR B U 81 B N3 U 81 1_555 B A 113 B N1 A 113 1_555 hydrog WATSON-CRICK B G 82 B N1 G 82 1_555 B C 112 B N3 C 112 1_555 hydrog WATSON-CRICK B G 82 B N2 G 82 1_555 B C 112 B O2 C 112 1_555 hydrog WATSON-CRICK B G 82 B O6 G 82 1_555 B C 112 B N4 C 112 1_555 hydrog G-A MISPAIR B G 83 B N2 G 83 1_555 B A 110 B N7 A 110 1_555 hydrog REVERSED HOOGSTEEN B A 86 B N6 A 86 1_555 B U 107 B O2 U 107 1_555 hydrog REVERSED HOOGSTEEN B A 86 B N7 A 86 1_555 B U 107 B N3 U 107 1_555 hydrog TYPE_5_PAIR B A 87 B N6 A 87 1_555 B A 106 B N1 A 106 1_555 hydrog TYPE_5_PAIR B A 87 B N7 A 87 1_555 B A 106 B N6 A 106 1_555 hydrog A-C MISPAIR B A 88 B N6 A 88 1_555 B C 105 B O2 C 105 1_555 hydrog WATSON-CRICK B C 89 B N3 C 89 1_555 B G 104 B N1 G 104 1_555 hydrog WATSON-CRICK B C 89 B N4 C 89 1_555 B G 104 B O6 G 104 1_555 hydrog WATSON-CRICK B C 89 B O2 C 89 1_555 B G 104 B N2 G 104 1_555 hydrog WATSON-CRICK B C 90 B N3 C 90 1_555 B G 103 B N1 G 103 1_555 hydrog WATSON-CRICK B C 90 B N4 C 90 1_555 B G 103 B O6 G 103 1_555 hydrog WATSON-CRICK B C 90 B O2 C 90 1_555 B G 103 B N2 G 103 1_555 hydrog WATSON-CRICK B A 91 B N1 A 91 1_555 B U 102 B N3 U 102 1_555 hydrog WATSON-CRICK B A 91 B N6 A 91 1_555 B U 102 B O4 U 102 1_555 hydrog WATSON-CRICK B C 92 B N3 C 92 1_555 B G 101 B N1 G 101 1_555 hydrog WATSON-CRICK B C 92 B N4 C 92 1_555 B G 101 B O6 G 101 1_555 hydrog WATSON-CRICK B C 92 B O2 C 92 1_555 B G 101 B N2 G 101 1_555 hydrog WATSON-CRICK B A 93 B N1 A 93 1_555 B U 100 B N3 U 100 1_555 hydrog WATSON-CRICK B A 93 B N6 A 93 1_555 B U 100 B O4 U 100 1_555 hydrog WATSON-CRICK B G 94 B N1 G 94 1_555 B C 99 B N3 C 99 1_555 hydrog WATSON-CRICK B G 94 B N2 G 94 1_555 B C 99 B O2 C 99 1_555 hydrog WATSON-CRICK B G 94 B O6 G 94 1_555 B C 99 B N4 C 99 1_555 hydrog G-A MISPAIR B G 95 B N2 G 95 1_555 B A 98 B N7 A 98 1_555 RNA glmS ribozyme fold, self-cleavage, transesterification, metalloribozyme, RNA 4MEH PDB 1 4MEH AGCGCCUGGACUUAAAGCCAUUGCACU 4MEH PDB 2 4MEH GGCGGCUUUAAGUUGACGAGGGCAGGGUUAAACGAGACAUCGGCGAGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGAC UGGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAA 0 26 4MEH 0 26 4MEH A 1 1 27 1 126 4MEH 1 126 4MEH B 2 1 126 BINDING SITE FOR RESIDUE CA A 101 A CA 101 Software 2 BINDING SITE FOR RESIDUE CA B 201 B CA 201 Software 3 BINDING SITE FOR RESIDUE CA B 202 B CA 202 Software 3 BINDING SITE FOR RESIDUE CA B 203 B CA 203 Software 3 BINDING SITE FOR RESIDUE CA B 204 B CA 204 Software 5 BINDING SITE FOR RESIDUE CA B 205 B CA 205 Software 1 BINDING SITE FOR RESIDUE CA B 206 B CA 206 Software 2 BINDING SITE FOR RESIDUE CA B 207 B CA 207 Software 3 BINDING SITE FOR RESIDUE CA B 208 B CA 208 Software 2 A G 1 A G 2 2 1_555 B G 47 B G 47 2 1_555 B A 30 B A 30 3 1_555 B G 47 B G 47 3 1_555 B U 48 B U 48 3 1_555 B A 16 B A 16 3 1_555 B C 41 B C 41 3 1_555 B G 42 B G 42 3 1_555 B G 21 B G 21 3 1_555 B G 22 B G 22 3 1_555 B U 48 B U 48 3 1_555 A G 1 A G 2 5 1_555 A C 2 A C 3 5 1_555 B A 16 B A 16 5 1_555 B C 17 B C 17 5 1_555 B G 18 B G 18 5 1_555 B G 22 B G 22 1 1_555 A C 2 A C 3 2 1_555 B G 20 B G 20 2 1_555 B G 27 B G 27 3 1_555 B C 50 B C 50 3 1_555 B C 51 B C 51 3 1_555 B G 43 B G 43 2 3_445 B G 54 B G 54 2 1_555 18 P 21 21 2