0.010771
0.000000
0.000000
0.000000
0.004874
0.000000
0.000000
0.000000
0.006195
0.000000
0.000000
0.000000
Grigg, J.C.
Ke, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
92.838
205.182
161.421
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C10 H16 N5 O14 P3
523.180
n
GUANOSINE-5'-TRIPHOSPHATE
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
N
Y
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
P
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
P
N
121
N
O
N
122
N
O
N
123
N
O
N
124
N
C
N
125
R
C
N
126
N
O
N
127
S
C
N
128
N
O
N
129
R
C
N
130
N
O
N
131
R
C
Y
132
N
N
Y
133
N
C
Y
134
N
N
Y
135
N
C
N
136
N
C
N
137
N
O
N
138
N
N
N
139
N
C
N
140
N
N
N
141
N
N
Y
142
N
C
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
MG
N
160
N
O
N
161
N
P
N
162
N
O
N
163
N
O
N
164
N
O
N
165
N
C
N
166
R
C
N
167
N
O
N
168
S
C
N
169
N
O
N
170
R
C
N
171
N
O
N
172
R
C
N
173
N
N
N
174
N
C
N
175
N
O
N
176
N
N
N
177
N
C
N
178
N
O
N
179
N
C
N
180
N
C
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
doub
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
Y
100
N
sing
Y
101
N
sing
Y
102
N
doub
N
103
N
sing
Y
104
N
sing
N
105
N
sing
Y
106
N
doub
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
Y
150
N
sing
Y
151
N
sing
Y
152
N
doub
N
153
N
sing
Y
154
N
sing
N
155
N
sing
Y
156
N
doub
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
UK
Structure
STRUE6
2005
0969-2126
21
2025
2032
10.1016/j.str.2013.09.001
24095061
Structural Determinants for Geometry and Information Decoding of tRNA by T Box Leader RNA.
2013
10.2210/pdb4mgn/pdb
pdb_00004mgn
100
1
CCD
2013-03-07
ADSC QUANTUM 315
Cryogenically-cooled single crystal Si(220) side bounce monochromator.
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
24-ID-E
APS
0.979
SYNCHROTRON
APS BEAMLINE 24-ID-E
28041.578
glyQS T box riboswitch
2
syn
polymer
24332.295
tRNA-glycine
2
syn
polymer
24.305
MAGNESIUM ION
18
syn
non-polymer
no
yes
(GTP)GAAUCAAUAGUAGUUAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUAAUGAAA
CGGCAGUUCC
GGAAUCAAUAGUAGUUAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUAAUGAAACGGC
AGUUCC
A,C
polyribonucleotide
no
yes
(GTP)CGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAGUCCCGUCUUCCGCUCCA
GCGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAGUCCCGUCUUCCGCUCCA
B,D
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
2
3.67
66.48
hanging drop
7.0
80mM NaCl, 20mM MgCl2, 40mM sodium cacodylate, 12mM spermine, 10% 2-methyl-1,3 propanediol, pH 7.0, hanging drop, temperature 291K
291
-13.212
1
19
A
10
A
95
-3.822
A_GTP10:C95_A
1
7.248
0.093
-0.909
-0.227
-4.735
1
19
A
11
A
94
-0.571
A_G11:C94_A
2
-4.683
-0.428
-0.440
-0.183
-3.439
1
20
A
12
A
93
0.554
A_A12:U93_A
3
-10.846
0.053
-0.268
-0.075
-10.642
1
20
A
13
A
92
-2.488
A_A13:U92_A
4
-14.897
0.208
-0.136
0.014
-12.066
1
28
A
14
A
91
-8.598
A_U14:G91_A
5
-7.561
1.731
0.243
-0.397
-5.008
2
A
15
A
90
-48.930
A_C15:A90_A
6
-20.982
4.356
-0.327
-1.818
-11.596
1
19
B
33
A
89
-0.141
B_G33:C89_A
7
2.601
0.054
-0.536
-0.095
3.433
1
B
34
A
88
19.466
B_C34:G88_A
8
7.190
1.355
-0.566
0.635
6.175
1
19
B
35
A
87
0.824
B_C35:G87_A
9
-2.402
0.176
-0.453
-0.121
-1.488
6
B
36
A
86
-6.052
B_A36:C86_A
10
-3.054
6.885
-0.596
-4.352
-23.473
2
21
B
37
A
18
162.701
B_A37:U18_A
11
-2.752
0.138
-0.367
1.428
2.888
1
19
B
38
B
30
0.477
B_G38:C30_B
12
-11.935
-0.096
0.170
-0.085
-8.216
1
19
B
39
B
29
2.603
B_G39:C29_B
13
-15.016
-0.439
-0.325
-0.151
-4.373
1
20
B
40
B
28
-0.502
B_U40:A28_B
14
-5.715
0.143
-0.035
-0.042
-4.230
1
19
B
41
B
27
1.001
B_G41:C27_B
15
-2.680
0.220
0.083
-0.051
-11.775
1
19
B
42
B
26
-3.529
B_G42:C26_B
16
-22.701
0.224
0.398
-0.098
-20.319
1
8
B
43
B
25
-18.853
B_G43:A25_B
17
-24.738
0.402
0.344
1.603
-13.599
1
19
B
10
B
24
0.785
B_G10:C24_B
18
-11.592
-1.276
-0.095
-0.493
-6.968
1
20
B
11
B
23
-1.682
B_U11:A23_B
19
-13.149
-0.551
0.119
-0.069
-12.903
1
20
B
12
B
22
-10.551
B_U12:A22_B
20
-7.443
0.058
0.219
0.000
11.207
1
B
13
B
21
-9.272
B_C13:G21_B
21
-7.805
0.567
-0.138
0.078
2.733
4
24
B
14
B
8
-101.615
B_A14:U8_B
22
-2.176
-3.892
1.248
-2.047
-0.556
2
22
B
15
B
47
164.684
B_G15:C47_B
23
21.665
-0.198
0.218
3.429
4.112
A
41
A
45
-115.325
A_A41:A45_A
24
5.232
5.068
0.520
1.278
-2.536
4
24
A
57
A
61
-96.175
A_U57:A61_A
25
4.532
4.149
-0.262
-1.995
11.597
2
A
44
A
56
124.905
A_G44:G56_A
26
-13.670
-2.207
0.428
-1.675
-8.696
1
19
A
62
A
43
0.570
A_G62:C43_A
27
-14.886
0.668
0.098
-0.099
18.344
1
19
B
55
B
18
-0.189
B_C55:G18_B
28
-29.697
-0.378
0.166
-0.174
21.897
8
2
A
19
A
84
173.934
A_A19:A84_A
29
14.130
5.974
1.279
-4.773
0.168
A
21
A
83
-82.784
A_U21:A83_A
30
-15.233
2.880
-1.619
-0.690
1.883
10
11
A
22
A
82
-11.502
A_A22:G82_A
31
-10.058
-6.986
0.023
-4.110
-1.042
A
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AA_A12A13:U92U93_AA
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AA_U14C15:A90G91_AA
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BB_C35A36:C86G87_AA
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BB_A37G38:C30U18_BA
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B
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B
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BB_G38G39:C29C30_BB
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BB_G39U40:A28C29_BB
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BB_G41G42:C26C27_BB
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BB_G42G43:A25C26_BB
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BB_G43G10:C24A25_BB
17
15.082
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50.174
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B
B
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B
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BB_G10U11:A23C24_BB
18
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0.204
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B
B
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B
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BB_U11U12:A22A23_BB
19
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2.300
40.460
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B
B
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B
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BB_C13A14:U8G21_BB
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AA_G44G62:C43G56_AA
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AA_U21A22:G82A83_AA
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AA_A22G23:U81G82_AA
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AA_G23U24:A80U81_AA
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AA_U24U25:A79A80_AA
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AA_U25A26:U78A79_AA
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A
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AA_A26A27:U77U78_AA
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A
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AA_A27C28:G76U77_AA
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A
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AA_C28C29:G75G76_AA
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A
A
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AA_C29U33:A73G75_AA
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34
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A
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AA_U33C34:G72A73_AA
37
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A
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35
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A
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AA_C34U35:A71G72_AA
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A
A
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36
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A
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AA_U35U36:A70A71_AA
39
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A
A
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37
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A
A
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AA_U36C37:G69A70_AA
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A
A
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A
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AA_C37G46:U68G69_AA
41
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A
A
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A
A
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AA_G46C47:G67U68_AA
42
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A
A
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48
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A
A
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66
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AA_C47C48:G66G67_AA
43
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A
A
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49
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A
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AA_C48G49:C65G66_AA
44
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A
A
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50
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A
A
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AA_G49G50:C64C65_AA
45
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A
A
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51
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A
A
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AA_G50G51:C63C64_AA
46
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B
B
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2
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B
B
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70
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BB_GTP1C2:G70C71_BB
47
1.517
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B
B
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3
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B
B
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69
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BB_C2G3:C69G70_BB
48
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B
B
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4
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B
B
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68
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BB_G3G4:C68C69_BB
49
0.499
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B
B
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5
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B
B
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67
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BB_G4A5:U67C68_BB
50
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B
B
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6
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B
B
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66
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BB_A5A6:U66U67_BB
51
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B
B
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7
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B
B
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65
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BB_A6G7:C65U66_BB
52
3.909
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B
B
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48
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B
B
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64
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BB_G7G48:U64C65_BB
53
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B
B
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49
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B
B
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63
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BB_G48C49:G63U64_BB
54
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B
B
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50
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B
B
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62
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BB_C49G50:C62G63_BB
55
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B
B
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51
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B
B
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61
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BB_G50G51:C61C62_BB
56
2.553
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B
B
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52
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B
B
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60
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BB_G51G52:C60C61_BB
57
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B
B
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53
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B
B
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BB_G52U53:A57C60_BB
58
-0.209
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B
B
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54
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B
B
57
17
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BB_U53U54:G17A57_BB
59
7.195
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41.886
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C
C
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11
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C
C
95
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CC_GTP10G11:C94C95_CC
60
2.055
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31.971
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C
C
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12
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C
C
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93
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CC_G11A12:U93C94_CC
61
-0.531
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C
C
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13
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C
C
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CC_A12A13:U92U93_CC
62
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C
C
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61
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C
C
58
57
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CC_A45A61:U57G58_CC
63
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C
C
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44
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C
C
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CC_A61G44:G56U57_CC
64
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C
C
44
62
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C
C
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43
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CC_G44G62:C43G56_CC
65
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C
D
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55
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C
D
43
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CD_G62C55:G18C43_DC
66
-1.687
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C
C
19
21
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C
C
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CC_A19U21:A83A84_CC
67
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C
C
21
22
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C
C
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82
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CC_U21A22:G82A83_CC
68
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C
C
22
23
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C
C
82
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CC_A22G23:U81G82_CC
69
-2.520
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C
C
23
24
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C
C
81
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CC_G23U24:A80U81_CC
70
1.410
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C
C
24
25
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C
C
80
79
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CC_U24U25:A79A80_CC
71
-1.008
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C
C
25
26
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C
C
79
78
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CC_U25A26:U78A79_CC
72
-6.332
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0.068
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C
C
26
27
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C
C
78
77
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CC_A26A27:U77U78_CC
73
8.816
-18.126
26.000
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C
C
27
28
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C
C
77
76
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-1.549
CC_A27C28:G76U77_CC
74
-0.891
1.485
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-3.646
-0.359
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C
C
28
29
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C
C
76
75
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CC_C28C29:G75G76_CC
75
6.626
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31.895
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0.491
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C
C
29
33
4.028
C
C
75
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4.022
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CC_C29U33:A73G75_CC
76
24.585
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107.090
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C
C
33
34
22.171
C
C
73
72
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CC_U33C34:G72A73_CC
77
2.694
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27.771
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3.022
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C
C
34
35
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C
C
72
71
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CC_C34U35:A71G72_CC
78
-5.589
9.214
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C
C
35
36
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C
C
71
70
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-1.338
CC_U35U36:A70A71_CC
79
2.321
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32.907
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0.223
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36.579
C
C
36
37
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C
C
70
69
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CC_U36C37:G69A70_CC
80
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32.602
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-4.826
C
C
37
46
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C
C
69
68
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-3.039
CC_C37G46:U68G69_CC
81
4.435
72.853
-1.056
26.563
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C
C
46
47
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C
C
68
67
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CC_G46C47:G67U68_CC
82
3.930
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35.579
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-0.881
2.451
34.784
C
C
47
48
21.123
C
C
67
66
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-1.895
CC_C47C48:G66G67_CC
83
-0.908
1.552
32.563
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-0.304
2.526
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C
C
48
49
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C
C
66
65
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-0.342
-1.587
CC_C48G49:C65G66_CC
84
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5.038
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-5.225
0.163
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C
C
49
50
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C
C
65
64
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0.005
-1.485
CC_G49G50:C64C65_CC
85
-1.005
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34.050
-4.237
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2.629
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C
C
50
51
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C
C
64
63
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-1.821
CC_G50G51:C63C64_CC
86
1.248
-2.164
32.027
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-0.218
3.082
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D
D
33
34
-2.034
C
C
89
88
3.032
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DD_G33C34:G88C89_CC
87
-0.095
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34.069
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D
D
34
35
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C
C
88
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2.974
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DD_C34C35:G87G88_CC
88
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24.089
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3.294
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D
D
35
36
-32.686
C
C
87
17
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DD_C35A36:A17G87_CC
89
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-6.496
-29.892
-6.577
6.825
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D
D
36
37
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C
C
17
18
3.415
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DD_A36A37:U18A17_CC
90
6.612
-11.178
33.965
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D
D
37
38
6.240
C
D
18
30
3.069
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DD_A37G38:C30U18_DC
91
-19.220
10.199
140.344
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2.861
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D
D
38
39
16.569
D
D
30
29
3.468
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DD_G38G39:C29C30_DD
92
-0.001
0.002
32.836
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2.821
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D
D
39
40
12.565
D
D
29
28
3.186
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-1.417
DD_G39U40:A28C29_DD
93
-1.015
1.830
31.679
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0.038
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D
D
40
41
17.439
D
D
28
27
3.175
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-1.329
DD_U40G41:C27A28_DD
94
-1.329
2.253
33.283
-3.648
-0.700
3.019
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D
D
41
42
11.103
D
D
27
26
3.424
6.346
-0.123
-1.710
DD_G41G42:C26C27_DD
95
3.513
-6.147
32.696
-4.012
0.791
3.272
38.946
D
D
42
43
-3.467
D
D
26
25
3.276
-2.309
-1.123
-1.549
DD_G42G43:A25C26_DD
96
2.837
-4.261
38.781
-2.043
2.029
2.277
62.527
D
D
43
10
7.425
D
D
25
24
3.452
7.607
-2.766
-3.071
DD_G43G10:C24A25_DD
97
17.480
-17.061
59.833
-3.269
3.379
3.151
40.940
D
D
10
11
-1.262
D
D
24
23
3.123
-0.883
-0.353
-1.404
DD_G10U11:A23C24_DD
98
-0.012
0.017
40.931
-1.915
0.503
2.316
39.723
D
D
11
12
28.599
D
D
23
22
3.358
18.715
0.028
-1.466
DD_U11U12:A22A23_DD
99
-1.439
2.198
35.167
-4.173
-0.197
2.274
31.048
D
D
12
13
9.610
D
D
22
21
2.601
5.103
0.399
-2.013
DD_U12C13:G21A22_DD
100
4.713
-8.876
30.279
-4.500
-0.061
3.462
58.358
D
D
13
14
-16.275
D
D
21
8
3.430
-15.701
-1.505
-0.291
DD_C13A14:U8G21_DD
101
-2.934
3.041
56.315
0.589
1.378
3.898
-72.770
D
D
14
15
-18.886
D
D
8
47
3.280
22.138
1.833
-2.587
DD_A14G15:C47U8_DD
102
-2.270
-1.937
-69.736
1.362
1.461
2.915
38.180
D
D
1
2
8.041
D
D
71
70
3.143
5.244
0.060
-1.500
DD_GTP1C2:G70C71_DD
103
-0.755
1.158
37.825
-2.908
-0.180
2.806
28.440
D
D
2
3
10.817
D
D
70
69
3.161
5.267
-0.331
-1.745
DD_C2G3:C69G70_DD
104
-4.064
8.346
27.667
-4.670
-0.189
2.861
36.550
D
D
3
4
9.228
D
D
69
68
3.105
5.763
-0.184
-1.396
DD_G3G4:C68C69_DD
105
-1.693
2.711
36.070
-2.955
0.079
2.855
36.448
D
D
4
5
9.163
D
D
68
67
3.075
5.709
0.033
-1.215
DD_G4A5:U67C68_DD
106
0.084
-0.135
36.013
-2.665
-0.042
3.000
36.804
D
D
5
6
10.135
D
D
67
66
3.253
6.369
0.216
-1.258
DD_A5A6:U66U67_DD
107
0.524
-0.834
36.264
-2.826
-0.273
2.350
34.061
D
D
6
7
20.984
D
D
66
65
3.091
12.000
0.010
-1.521
DD_A6G7:C65U66_DD
108
4.869
-8.515
31.570
-4.250
0.653
2.803
27.752
D
D
7
48
11.802
D
D
65
64
3.351
5.622
-0.143
-2.430
DD_G7G48:U64C65_DD
109
-0.719
1.510
27.178
-6.355
0.133
3.044
39.501
D
D
48
49
1.487
D
D
64
63
3.074
1.004
-0.237
-1.552
DD_G48C49:G63U64_DD
110
-2.634
3.901
39.404
-2.406
0.060
2.319
32.727
D
D
49
50
18.944
D
D
63
62
2.970
10.490
0.066
-1.602
DD_C49G50:C62G63_DD
111
1.726
-3.117
30.997
-4.350
0.132
2.615
28.845
D
D
50
51
15.358
D
D
62
61
3.208
7.564
0.491
-1.916
DD_G50G51:C61C62_DD
112
0.437
-0.888
27.852
-5.375
-0.897
3.260
38.400
D
D
51
52
7.680
D
D
61
60
3.527
5.038
0.381
-1.879
DD_G51G52:C60C61_DD
113
-0.159
0.242
38.080
-3.512
-0.600
3.122
87.383
D
D
52
53
0.747
D
D
60
57
3.126
1.031
-2.422
-1.976
DD_G52U53:A57C60_DD
114
-0.664
0.481
87.377
-1.451
1.739
3.088
44.798
D
D
53
54
8.220
D
D
57
17
3.134
6.218
1.689
-1.921
DD_U53U54:G17A57_DD
115
7.745
-10.239
43.738
-3.065
-1.538
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ncs_dom_lim
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2013-10-23
1
1
2013-11-27
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.beg_label_asym_id
_struct_ncs_dom_lim.beg_label_comp_id
_struct_ncs_dom_lim.beg_label_seq_id
_struct_ncs_dom_lim.end_auth_comp_id
_struct_ncs_dom_lim.end_label_asym_id
_struct_ncs_dom_lim.end_label_comp_id
_struct_ncs_dom_lim.end_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of the in vitro transcribed G. kaustophilus tRNA-Gly
RCSB
Y
RCSB
2013-08-28
REL
REL
MG
MAGNESIUM ION
in vitro transcribed. Occurs naturally in Geobacillus kaustophilus
sample
in vitro transcribed. Occurs naturally in Geobacillus kaustophilus
sample
4JRC
PDB ENTRIES 4JRC and 4MGM
PDB
experimental model
4MGM
PDB ENTRIES 4JRC and 4MGM
PDB
experimental model
MG
1
3
MG
MG
101
A
MG
6
3
MG
MG
102
A
MG
13
3
MG
MG
103
A
MG
15
3
MG
MG
104
A
MG
16
3
MG
MG
105
A
MG
2
3
MG
MG
101
B
MG
3
3
MG
MG
102
B
MG
9
3
MG
MG
103
B
MG
17
3
MG
MG
104
B
MG
4
3
MG
MG
101
C
MG
12
3
MG
MG
102
C
MG
14
3
MG
MG
103
C
MG
18
3
MG
MG
104
C
MG
5
3
MG
MG
101
D
MG
7
3
MG
MG
102
D
MG
8
3
MG
MG
103
D
MG
10
3
MG
MG
104
D
MG
11
3
MG
MG
105
D
GTP
10
n
1
GTP
10
A
G
11
n
2
G
11
A
A
12
n
3
A
12
A
A
13
n
4
A
13
A
U
14
n
5
U
14
A
C
15
n
6
C
15
A
A
16
n
7
A
16
A
A
17
n
8
A
17
A
U
18
n
9
U
18
A
A
19
n
10
A
19
A
G
20
n
11
G
20
A
U
21
n
12
U
21
A
A
22
n
13
A
22
A
G
23
n
14
G
23
A
U
24
n
15
U
24
A
U
25
n
16
U
25
A
A
26
n
17
A
26
A
A
27
n
18
A
27
A
C
28
n
19
C
28
A
C
29
n
20
C
29
A
C
30
n
21
C
30
A
U
31
n
22
U
31
A
C
32
n
23
C
32
A
U
33
n
24
U
33
A
C
34
n
25
C
34
A
U
35
n
26
U
35
A
U
36
n
27
U
36
A
C
37
n
28
C
37
A
C
38
n
29
C
38
A
G
39
n
30
G
39
A
A
40
n
31
A
40
A
A
41
n
32
A
41
A
G
42
n
33
G
42
A
C
43
n
34
C
43
A
G
44
n
35
G
44
A
A
45
n
36
A
45
A
G
46
n
37
G
46
A
C
47
n
38
C
47
A
C
48
n
39
C
48
A
G
49
n
40
G
49
A
G
50
n
41
G
50
A
G
51
n
42
G
51
A
G
52
n
43
G
52
A
G
53
n
44
G
53
A
C
54
n
45
C
54
A
G
55
n
46
G
55
A
G
56
n
47
G
56
A
U
57
n
48
U
57
A
G
58
n
49
G
58
A
G
59
n
50
G
59
A
G
60
n
51
G
60
A
A
61
n
52
A
61
A
G
62
n
53
G
62
A
C
63
n
54
C
63
A
C
64
n
55
C
64
A
C
65
n
56
C
65
A
G
66
n
57
G
66
A
G
67
n
58
G
67
A
U
68
n
59
U
68
A
G
69
n
60
G
69
A
A
70
n
61
A
70
A
A
71
n
62
A
71
A
G
72
n
63
G
72
A
A
73
n
64
A
73
A
C
74
n
65
C
74
A
G
75
n
66
G
75
A
G
76
n
67
G
76
A
U
77
n
68
U
77
A
U
78
n
69
U
78
A
A
79
n
70
A
79
A
A
80
n
71
A
80
A
U
81
n
72
U
81
A
G
82
n
73
G
82
A
A
83
n
74
A
83
A
A
84
n
75
A
84
A
A
85
n
76
A
85
A
C
86
n
77
C
86
A
G
87
n
78
G
87
A
G
88
n
79
G
88
A
C
89
n
80
C
89
A
A
90
n
81
A
90
A
G
91
n
82
G
91
A
U
92
n
83
U
92
A
U
93
n
84
U
93
A
C
94
n
85
C
94
A
C
95
n
86
C
95
A
GTP
1
n
1
GTP
1
B
C
2
n
2
C
2
B
G
3
n
3
G
3
B
G
4
n
4
G
4
B
A
5
n
5
A
5
B
A
6
n
6
A
6
B
G
7
n
7
G
7
B
U
8
n
8
U
8
B
A
9
n
9
A
9
B
G
10
n
10
G
10
B
U
11
n
11
U
11
B
U
12
n
12
U
12
B
C
13
n
13
C
13
B
A
14
n
14
A
14
B
G
15
n
15
G
15
B
U
16
n
16
U
16
B
G
17
n
17
G
17
B
G
18
n
18
G
18
B
U
19
n
19
U
19
B
A
20
n
20
A
20
B
G
21
n
21
G
21
B
A
22
n
22
A
22
B
A
23
n
23
A
23
B
C
24
n
24
C
24
B
A
25
n
25
A
25
B
C
26
n
26
C
26
B
C
27
n
27
C
27
B
A
28
n
28
A
28
B
C
29
n
29
C
29
B
C
30
n
30
C
30
B
U
31
n
31
U
31
B
U
32
n
32
U
32
B
G
33
n
33
G
33
B
C
34
n
34
C
34
B
C
35
n
35
C
35
B
A
36
n
36
A
36
B
A
37
n
37
A
37
B
G
38
n
38
G
38
B
G
39
n
39
G
39
B
U
40
n
40
U
40
B
G
41
n
41
G
41
B
G
42
n
42
G
42
B
G
43
n
43
G
43
B
G
44
n
44
G
44
B
G
45
n
45
G
45
B
U
46
n
46
U
46
B
C
47
n
47
C
47
B
G
48
n
48
G
48
B
C
49
n
49
C
49
B
G
50
n
50
G
50
B
G
51
n
51
G
51
B
G
52
n
52
G
52
B
U
53
n
53
U
53
B
U
54
n
54
U
54
B
C
55
n
55
C
55
B
G
56
n
56
G
56
B
A
57
n
57
A
57
B
G
58
n
58
G
58
B
U
59
n
59
U
59
B
C
60
n
60
C
60
B
C
61
n
61
C
61
B
C
62
n
62
C
62
B
G
63
n
63
G
63
B
U
64
n
64
U
64
B
C
65
n
65
C
65
B
U
66
n
66
U
66
B
U
67
n
67
U
67
B
C
68
n
68
C
68
B
C
69
n
69
C
69
B
G
70
n
70
G
70
B
C
71
n
71
C
71
B
U
72
n
72
U
72
B
n
73
73
B
n
74
74
B
n
75
75
B
GTP
10
n
1
GTP
10
C
G
11
n
2
G
11
C
A
12
n
3
A
12
C
A
13
n
4
A
13
C
U
14
n
5
U
14
C
C
15
n
6
C
15
C
A
16
n
7
A
16
C
A
17
n
8
A
17
C
U
18
n
9
U
18
C
A
19
n
10
A
19
C
G
20
n
11
G
20
C
U
21
n
12
U
21
C
A
22
n
13
A
22
C
G
23
n
14
G
23
C
U
24
n
15
U
24
C
U
25
n
16
U
25
C
A
26
n
17
A
26
C
A
27
n
18
A
27
C
C
28
n
19
C
28
C
C
29
n
20
C
29
C
C
30
n
21
C
30
C
U
31
n
22
U
31
C
C
32
n
23
C
32
C
U
33
n
24
U
33
C
C
34
n
25
C
34
C
U
35
n
26
U
35
C
U
36
n
27
U
36
C
C
37
n
28
C
37
C
C
38
n
29
C
38
C
G
39
n
30
G
39
C
A
40
n
31
A
40
C
A
41
n
32
A
41
C
G
42
n
33
G
42
C
C
43
n
34
C
43
C
G
44
n
35
G
44
C
A
45
n
36
A
45
C
G
46
n
37
G
46
C
C
47
n
38
C
47
C
C
48
n
39
C
48
C
G
49
n
40
G
49
C
G
50
n
41
G
50
C
G
51
n
42
G
51
C
G
52
n
43
G
52
C
G
53
n
44
G
53
C
C
54
n
45
C
54
C
G
55
n
46
G
55
C
G
56
n
47
G
56
C
U
57
n
48
U
57
C
G
58
n
49
G
58
C
G
59
n
50
G
59
C
G
60
n
51
G
60
C
A
61
n
52
A
61
C
G
62
n
53
G
62
C
C
63
n
54
C
63
C
C
64
n
55
C
64
C
C
65
n
56
C
65
C
G
66
n
57
G
66
C
G
67
n
58
G
67
C
U
68
n
59
U
68
C
G
69
n
60
G
69
C
A
70
n
61
A
70
C
A
71
n
62
A
71
C
G
72
n
63
G
72
C
A
73
n
64
A
73
C
C
74
n
65
C
74
C
G
75
n
66
G
75
C
G
76
n
67
G
76
C
U
77
n
68
U
77
C
U
78
n
69
U
78
C
A
79
n
70
A
79
C
A
80
n
71
A
80
C
U
81
n
72
U
81
C
G
82
n
73
G
82
C
A
83
n
74
A
83
C
A
84
n
75
A
84
C
A
85
n
76
A
85
C
C
86
n
77
C
86
C
G
87
n
78
G
87
C
G
88
n
79
G
88
C
C
89
n
80
C
89
C
A
90
n
81
A
90
C
G
91
n
82
G
91
C
U
92
n
83
U
92
C
U
93
n
84
U
93
C
C
94
n
85
C
94
C
C
95
n
86
C
95
C
GTP
1
n
1
GTP
1
D
C
2
n
2
C
2
D
G
3
n
3
G
3
D
G
4
n
4
G
4
D
A
5
n
5
A
5
D
A
6
n
6
A
6
D
G
7
n
7
G
7
D
U
8
n
8
U
8
D
A
9
n
9
A
9
D
G
10
n
10
G
10
D
U
11
n
11
U
11
D
U
12
n
12
U
12
D
C
13
n
13
C
13
D
A
14
n
14
A
14
D
G
15
n
15
G
15
D
U
16
n
16
U
16
D
G
17
n
17
G
17
D
G
18
n
18
G
18
D
U
19
n
19
U
19
D
A
20
n
20
A
20
D
G
21
n
21
G
21
D
A
22
n
22
A
22
D
A
23
n
23
A
23
D
C
24
n
24
C
24
D
A
25
n
25
A
25
D
C
26
n
26
C
26
D
C
27
n
27
C
27
D
A
28
n
28
A
28
D
C
29
n
29
C
29
D
C
30
n
30
C
30
D
U
31
n
31
U
31
D
U
32
n
32
U
32
D
G
33
n
33
G
33
D
C
34
n
34
C
34
D
C
35
n
35
C
35
D
A
36
n
36
A
36
D
A
37
n
37
A
37
D
G
38
n
38
G
38
D
G
39
n
39
G
39
D
U
40
n
40
U
40
D
G
41
n
41
G
41
D
G
42
n
42
G
42
D
G
43
n
43
G
43
D
G
44
n
44
G
44
D
G
45
n
45
G
45
D
U
46
n
46
U
46
D
C
47
n
47
C
47
D
G
48
n
48
G
48
D
C
49
n
49
C
49
D
G
50
n
50
G
50
D
G
51
n
51
G
51
D
G
52
n
52
G
52
D
U
53
n
53
U
53
D
U
54
n
54
U
54
D
C
55
n
55
C
55
D
G
56
n
56
G
56
D
A
57
n
57
A
57
D
G
58
n
58
G
58
D
U
59
n
59
U
59
D
C
60
n
60
C
60
D
C
61
n
61
C
61
D
C
62
n
62
C
62
D
G
63
n
63
G
63
D
U
64
n
64
U
64
D
C
65
n
65
C
65
D
U
66
n
66
U
66
D
U
67
n
67
U
67
D
C
68
n
68
C
68
D
C
69
n
69
C
69
D
G
70
n
70
G
70
D
C
71
n
71
C
71
D
U
72
n
72
U
72
D
C
73
n
73
C
73
D
n
74
74
D
n
75
75
D
author_and_software_defined_assembly
PISA
2
dimeric
author_and_software_defined_assembly
PISA
2
dimeric
3300
-71
25370
3330
-72
25880
A
G
55
A
O6
G
46
1_555
A
MG
102
F
MG
MG
1_555
A
G
56
A
O6
G
47
1_555
74.1
A
G
55
A
O6
G
46
1_555
A
MG
102
F
MG
MG
1_555
B
C
55
B
O2
C
55
1_555
84.2
A
G
56
A
O6
G
47
1_555
A
MG
102
F
MG
MG
1_555
B
C
55
B
O2
C
55
1_555
154.6
C
G
55
C
O6
G
46
1_555
C
MG
103
P
MG
MG
1_555
C
G
56
C
O6
G
47
1_555
75.6
C
G
55
C
O6
G
46
1_555
C
MG
103
P
MG
MG
1_555
C
G
62
C
O6
G
53
1_555
81.7
C
G
56
C
O6
G
47
1_555
C
MG
103
P
MG
MG
1_555
C
G
62
C
O6
G
53
1_555
117.1
C
G
55
C
O6
G
46
1_555
C
MG
103
P
MG
MG
1_555
D
C
55
D
O2
C
55
1_555
85.2
C
G
56
C
O6
G
47
1_555
C
MG
103
P
MG
MG
1_555
D
C
55
D
O2
C
55
1_555
153.6
C
G
62
C
O6
G
53
1_555
C
MG
103
P
MG
MG
1_555
D
C
55
D
O2
C
55
1_555
76.8
D
A
25
D
O5'
A
25
1_555
D
MG
104
U
MG
MG
1_555
D
C
26
D
OP2
C
26
1_555
107.1
D
U
54
D
O4
U
54
1_555
D
MG
103
T
MG
MG
1_555
D
A
57
D
OP2
A
57
1_555
86.1
A
GTP
10
GUANOSINE-5'-TRIPHOSPHATE
A
GTP
1
G
B
GTP
1
GUANOSINE-5'-TRIPHOSPHATE
B
GTP
1
G
C
GTP
10
GUANOSINE-5'-TRIPHOSPHATE
C
GTP
1
G
D
GTP
1
GUANOSINE-5'-TRIPHOSPHATE
D
GTP
1
G
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
C
73
B
C
73
1
Y
1
B
C
74
B
C
74
1
Y
1
B
A
75
B
A
75
1
Y
1
D
C
74
D
C
74
1
Y
1
D
A
75
D
A
75
1
Y
1
B
B
O2'
N2
G
G
15
58
2.19
1
-18.04
1.90
104.00
85.96
A
A
A
O3'
P
O5'
GTP
G
G
10
11
11
Y
1
14.79
1.10
110.50
125.29
A
A
A
O3'
P
OP1
GTP
G
G
10
11
11
Y
1
-19.33
1.90
104.00
84.67
B
B
B
O3'
P
O5'
GTP
C
C
1
2
2
Y
1
20.36
1.10
110.50
130.86
B
B
B
O3'
P
OP2
GTP
C
C
1
2
2
Y
1
-15.00
1.90
104.00
89.00
D
D
D
O3'
P
O5'
GTP
C
C
1
2
2
Y
1
49.68
1.10
110.50
160.18
D
D
D
O3'
P
OP2
GTP
C
C
1
2
2
Y
1
-43.82
2.20
105.20
61.38
D
D
D
O3'
P
OP1
GTP
C
C
1
2
2
Y
294.720
141.6037
38.120
0.2783
0.2364
0.2406
3.2000
43.2920
2512
25268
9.9400
97.8500
1.000
1.000
0.7110
0.4500
1
1.330
MOLECULAR REPLACEMENT
34.3100
0.9000
1.1100
PDB ENTRIES 4JRC and 4MGM
ML
FLAT BULK SOLVENT MODEL
3.2000
43.2920
0
6850
18
6832
0
0.001
7636
0.458
11904
0.019
1581
0.002
317
11.951
3800
1
C
1
2026
X-RAY DIFFRACTION
POSITIONAL
10.386
1
D
2
1658
X-RAY DIFFRACTION
POSITIONAL
10.386
0.3608
0.3420
3.2616
134
1176
1310
18
94.0000
0.3719
0.3402
3.3281
136
1213
1349
18
94.0000
0.3437
0.3413
3.4005
135
1205
1340
18
96.0000
0.3443
0.3347
3.4796
132
1195
1327
18
95.0000
0.3621
0.3313
3.5665
138
1243
1381
18
97.0000
0.3602
0.3210
3.6629
135
1244
1379
18
97.0000
0.3581
0.3057
3.7706
141
1250
1391
18
98.0000
0.3250
0.2659
3.8923
138
1264
1402
18
98.0000
0.3028
0.2664
4.0313
134
1268
1402
18
99.0000
0.3382
0.2750
4.1926
134
1258
1392
18
99.0000
0.3519
0.2687
4.3832
139
1283
1422
18
99.0000
0.3099
0.2573
4.6140
137
1276
1413
18
99.0000
0.2822
0.2480
4.9028
148
1289
1437
18
100.0000
0.2321
0.2144
5.2807
143
1281
1424
18
100.0000
0.2744
0.2025
5.8110
142
1313
1455
18
100.0000
0.2494
0.2229
6.6492
146
1317
1463
18
100.0000
0.2291
0.2085
8.3674
147
1321
1468
18
100.0000
0.2178
0.1706
43.2959
153
1360
1513
18
98.0000
74.540
3.200
50.000
4MGN
26207
0.160
2.093
1
4.200
6.900
98.800
3.200
3.260
2.29
1289
1.804
1
6.100
96.900
3.260
3.310
3.10
1251
1.776
1
6.600
98.400
3.310
3.380
3.42
1292
1.869
1
6.600
97.700
3.380
3.450
2.82
1298
1.839
1
6.700
98.600
3.450
3.520
3.18
1261
1.829
1
6.800
97.400
3.520
3.600
2.60
1283
1.814
1
6.800
98.000
3.600
3.690
3.23
1276
1.938
1
6.800
98.400
3.690
3.790
3.63
1316
2.126
1
6.800
98.400
0.978
3.790
3.910
3.78
1277
1.954
1
6.800
98.400
3.910
4.030
3.71
1297
2.070
1
6.900
99.100
0.875
4.030
4.180
4.35
1311
2.004
1
6.800
99.000
0.752
4.180
4.340
4.59
1302
2.063
1
6.900
99.400
0.600
4.340
4.540
5.79
1317
2.066
1
6.900
99.400
0.546
4.540
4.780
6.34
1326
2.029
1
7.000
99.500
0.390
4.780
5.080
8.77
1316
2.097
1
7.200
99.800
0.261
5.080
5.470
12.81
1339
2.225
1
7.300
99.900
0.215
5.470
6.020
15.71
1341
2.367
1
7.400
100.000
0.181
6.020
6.890
18.59
1335
2.436
1
7.300
100.000
0.104
6.890
8.670
29.59
1370
2.456
1
7.100
100.000
0.050
8.670
50.000
56.78
1410
2.800
1
7.000
97.700
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.2_1309
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
ADSC
Quantum
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
Co-crystal structure of the G. kaustophilus glyQS T box riboswitch Stem I in complex with tRNA
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
covale
1.590
both
A
GTP
10
A
O3'
GTP
1
1_555
A
G
11
A
P
G
2
1_555
covale
1.591
both
B
GTP
1
B
O3'
GTP
1
1_555
B
C
2
B
P
C
2
1_555
covale
1.590
both
C
GTP
10
C
O3'
GTP
1
1_555
C
G
11
C
P
G
2
1_555
covale
1.594
both
D
GTP
1
D
O3'
GTP
1
1_555
D
C
2
D
P
C
2
1_555
metalc
2.461
A
C
47
A
O3'
C
38
1_555
A
MG
103
G
MG
MG
1_555
metalc
2.514
A
G
55
A
O6
G
46
1_555
A
MG
102
F
MG
MG
1_555
metalc
2.995
A
G
56
A
O6
G
47
1_555
A
MG
102
F
MG
MG
1_555
metalc
2.531
A
G
58
A
O6
G
49
1_555
A
MG
101
E
MG
MG
1_555
metalc
2.474
A
G
58
A
OP2
G
49
1_555
A
MG
104
H
MG
MG
1_555
metalc
2.833
A
MG
102
F
MG
MG
1_555
B
C
55
B
O2
C
55
1_555
metalc
2.762
C
G
55
C
O6
G
46
1_555
C
MG
103
P
MG
MG
1_555
metalc
2.950
C
G
56
C
O6
G
47
1_555
C
MG
103
P
MG
MG
1_555
metalc
2.179
C
G
58
C
O6
G
49
1_555
C
MG
101
N
MG
MG
1_555
metalc
2.696
C
G
62
C
O6
G
53
1_555
C
MG
103
P
MG
MG
1_555
metalc
2.911
C
MG
103
P
MG
MG
1_555
D
C
55
D
O2
C
55
1_555
metalc
2.972
D
U
12
D
OP2
U
12
1_555
D
MG
102
S
MG
MG
1_555
metalc
2.907
D
A
25
D
O5'
A
25
1_555
D
MG
104
U
MG
MG
1_555
metalc
2.109
D
C
26
D
OP2
C
26
1_555
D
MG
104
U
MG
MG
1_555
metalc
2.555
D
U
54
D
O4
U
54
1_555
D
MG
103
T
MG
MG
1_555
metalc
2.290
D
A
57
D
OP2
A
57
1_555
D
MG
103
T
MG
MG
1_555
hydrog
WATSON-CRICK
A
GTP
10
A
N1
GTP
1
1_555
A
C
95
A
N3
C
86
1_555
hydrog
WATSON-CRICK
A
GTP
10
A
N2
GTP
1
1_555
A
C
95
A
O2
C
86
1_555
hydrog
WATSON-CRICK
A
GTP
10
A
O6
GTP
1
1_555
A
C
95
A
N4
C
86
1_555
hydrog
WATSON-CRICK
A
G
11
A
N1
G
2
1_555
A
C
94
A
N3
C
85
1_555
hydrog
WATSON-CRICK
A
G
11
A
N2
G
2
1_555
A
C
94
A
O2
C
85
1_555
hydrog
WATSON-CRICK
A
G
11
A
O6
G
2
1_555
A
C
94
A
N4
C
85
1_555
hydrog
WATSON-CRICK
A
A
12
A
N1
A
3
1_555
A
U
93
A
N3
U
84
1_555
hydrog
WATSON-CRICK
A
A
12
A
N6
A
3
1_555
A
U
93
A
O4
U
84
1_555
hydrog
WATSON-CRICK
A
A
13
A
N1
A
4
1_555
A
U
92
A
N3
U
83
1_555
hydrog
WATSON-CRICK
A
A
13
A
N6
A
4
1_555
A
U
92
A
O4
U
83
1_555
hydrog
TYPE_28_PAIR
A
U
14
A
N3
U
5
1_555
A
G
91
A
O6
G
82
1_555
hydrog
TYPE_28_PAIR
A
U
14
A
O2
U
5
1_555
A
G
91
A
N1
G
82
1_555
hydrog
C-A MISPAIR
A
C
15
A
O2
C
6
1_555
A
A
90
A
N6
A
81
1_555
hydrog
REVERSED WATSON-CRICK
A
U
18
A
N3
U
9
1_555
B
A
37
B
N1
A
37
1_555
hydrog
REVERSED WATSON-CRICK
A
U
18
A
O2
U
9
1_555
B
A
37
B
N6
A
37
1_555
hydrog
U-G MISPAIR
A
U
18
A
O2
U
9
1_555
B
G
38
B
N2
G
38
1_555
hydrog
TYPE_2_PAIR
A
A
19
A
N6
A
10
1_555
A
A
84
A
N7
A
75
1_555
hydrog
TYPE_2_PAIR
A
A
19
A
N7
A
10
1_555
A
A
84
A
N6
A
75
1_555
hydrog
G-U MISPAIR
A
G
20
A
N2
G
11
1_555
A
U
21
A
O4
U
12
1_555
hydrog
U-A PAIR
A
U
21
A
O2
U
12
1_555
A
A
83
A
N6
A
74
1_555
hydrog
U-A PAIR
A
U
21
A
O2
U
12
1_555
A
A
84
A
N6
A
75
1_555
hydrog
TYPE_11_PAIR
A
A
22
A
N6
A
13
1_555
A
G
82
A
N3
G
73
1_555
hydrog
TYPE_11_PAIR
A
A
22
A
N7
A
13
1_555
A
G
82
A
N2
G
73
1_555
hydrog
G-U MISPAIR
A
G
23
A
N2
G
14
1_555
A
U
81
A
O2
U
72
1_555
hydrog
WATSON-CRICK
A
U
24
A
N3
U
15
1_555
A
A
80
A
N1
A
71
1_555
hydrog
WATSON-CRICK
A
U
24
A
O4
U
15
1_555
A
A
80
A
N6
A
71
1_555
hydrog
WATSON-CRICK
A
U
25
A
N3
U
16
1_555
A
A
79
A
N1
A
70
1_555
hydrog
WATSON-CRICK
A
U
25
A
O4
U
16
1_555
A
A
79
A
N6
A
70
1_555
hydrog
WATSON-CRICK
A
A
26
A
N1
A
17
1_555
A
U
78
A
N3
U
69
1_555
hydrog
WATSON-CRICK
A
A
26
A
N6
A
17
1_555
A
U
78
A
O4
U
69
1_555
hydrog
WATSON-CRICK
A
A
27
A
N1
A
18
1_555
A
U
77
A
N3
U
68
1_555
hydrog
WATSON-CRICK
A
A
27
A
N6
A
18
1_555
A
U
77
A
O4
U
68
1_555
hydrog
WATSON-CRICK
A
C
28
A
N3
C
19
1_555
A
G
76
A
N1
G
67
1_555
hydrog
WATSON-CRICK
A
C
28
A
N4
C
19
1_555
A
G
76
A
O6
G
67
1_555
hydrog
WATSON-CRICK
A
C
28
A
O2
C
19
1_555
A
G
76
A
N2
G
67
1_555
hydrog
WATSON-CRICK
A
C
29
A
N3
C
20
1_555
A
G
75
A
N1
G
66
1_555
hydrog
WATSON-CRICK
A
C
29
A
N4
C
20
1_555
A
G
75
A
O6
G
66
1_555
hydrog
WATSON-CRICK
A
C
29
A
O2
C
20
1_555
A
G
75
A
N2
G
66
1_555
hydrog
C-A MISPAIR
A
C
30
A
O2
C
21
1_555
A
A
73
A
N6
A
64
1_555
hydrog
U-G MISPAIR
A
U
31
A
O4
U
22
1_555
A
G
75
A
N2
G
66
1_555
hydrog
C-G PAIR
A
C
32
A
N4
C
23
1_555
A
G
75
A
N3
G
66
1_555
hydrog
WATSON-CRICK
A
U
33
A
N3
U
24
1_555
A
A
73
A
N1
A
64
1_555
hydrog
WATSON-CRICK
A
U
33
A
O4
U
24
1_555
A
A
73
A
N6
A
64
1_555
hydrog
C-G PAIR
A
C
34
A
O2
C
25
1_555
A
G
72
A
N2
G
63
1_555
hydrog
WATSON-CRICK
A
U
35
A
N3
U
26
1_555
A
A
71
A
N1
A
62
1_555
hydrog
WATSON-CRICK
A
U
35
A
O4
U
26
1_555
A
A
71
A
N6
A
62
1_555
hydrog
WATSON-CRICK
A
U
36
A
N3
U
27
1_555
A
A
70
A
N1
A
61
1_555
hydrog
WATSON-CRICK
A
U
36
A
O4
U
27
1_555
A
A
70
A
N6
A
61
1_555
hydrog
WATSON-CRICK
A
C
37
A
N3
C
28
1_555
A
G
69
A
N1
G
60
1_555
hydrog
WATSON-CRICK
A
C
37
A
N4
C
28
1_555
A
G
69
A
O6
G
60
1_555
hydrog
WATSON-CRICK
A
C
37
A
O2
C
28
1_555
A
G
69
A
N2
G
60
1_555
hydrog
A-A MISPAIR
A
A
41
A
N6
A
32
1_555
A
A
45
A
N7
A
36
1_555
hydrog
TYPE_10_PAIR
A
G
42
A
N2
G
33
1_555
A
A
61
A
N1
A
52
1_555
hydrog
TYPE_10_PAIR
A
G
42
A
N3
G
33
1_555
A
A
61
A
N6
A
52
1_555
hydrog
WATSON-CRICK
A
C
43
A
N3
C
34
1_555
A
G
62
A
N1
G
53
1_555
hydrog
WATSON-CRICK
A
C
43
A
N4
C
34
1_555
A
G
62
A
O6
G
53
1_555
hydrog
WATSON-CRICK
A
C
43
A
O2
C
34
1_555
A
G
62
A
N2
G
53
1_555
hydrog
G-G MISPAIR
A
G
44
A
O6
G
35
1_555
A
G
56
A
N1
G
47
1_555
hydrog
TYPE_10_PAIR
A
A
45
A
N1
A
36
1_555
A
G
58
A
N2
G
49
1_555
hydrog
TYPE_10_PAIR
A
A
45
A
N6
A
36
1_555
A
G
58
A
N3
G
49
1_555
hydrog
TYPE_28_PAIR
A
G
46
A
N1
G
37
1_555
A
U
68
A
O2
U
59
1_555
hydrog
TYPE_28_PAIR
A
G
46
A
O6
G
37
1_555
A
U
68
A
N3
U
59
1_555
hydrog
WATSON-CRICK
A
C
47
A
N3
C
38
1_555
A
G
67
A
N1
G
58
1_555
hydrog
WATSON-CRICK
A
C
47
A
N4
C
38
1_555
A
G
67
A
O6
G
58
1_555
hydrog
WATSON-CRICK
A
C
47
A
O2
C
38
1_555
A
G
67
A
N2
G
58
1_555
hydrog
WATSON-CRICK
A
C
48
A
N3
C
39
1_555
A
G
66
A
N1
G
57
1_555
hydrog
WATSON-CRICK
A
C
48
A
N4
C
39
1_555
A
G
66
A
O6
G
57
1_555
hydrog
WATSON-CRICK
A
C
48
A
O2
C
39
1_555
A
G
66
A
N2
G
57
1_555
hydrog
WATSON-CRICK
A
G
49
A
N1
G
40
1_555
A
C
65
A
N3
C
56
1_555
hydrog
WATSON-CRICK
A
G
49
A
N2
G
40
1_555
A
C
65
A
O2
C
56
1_555
hydrog
WATSON-CRICK
A
G
49
A
O6
G
40
1_555
A
C
65
A
N4
C
56
1_555
hydrog
WATSON-CRICK
A
G
50
A
N1
G
41
1_555
A
C
64
A
N3
C
55
1_555
hydrog
WATSON-CRICK
A
G
50
A
N2
G
41
1_555
A
C
64
A
O2
C
55
1_555
hydrog
WATSON-CRICK
A
G
50
A
O6
G
41
1_555
A
C
64
A
N4
C
55
1_555
hydrog
WATSON-CRICK
A
G
51
A
N1
G
42
1_555
A
C
63
A
N3
C
54
1_555
hydrog
WATSON-CRICK
A
G
51
A
N2
G
42
1_555
A
C
63
A
O2
C
54
1_555
hydrog
WATSON-CRICK
A
G
51
A
O6
G
42
1_555
A
C
63
A
N4
C
54
1_555
hydrog
REVERSED HOOGSTEEN
A
U
57
A
N3
U
48
1_555
A
A
61
A
N7
A
52
1_555
hydrog
REVERSED HOOGSTEEN
A
U
57
A
O2
U
48
1_555
A
A
61
A
N6
A
52
1_555
hydrog
C-A MISPAIR
A
C
86
A
N4
C
77
1_555
B
A
36
B
N3
A
36
1_555
hydrog
WATSON-CRICK
A
G
87
A
N1
G
78
1_555
B
C
35
B
N3
C
35
1_555
hydrog
WATSON-CRICK
A
G
87
A
N2
G
78
1_555
B
C
35
B
O2
C
35
1_555
hydrog
WATSON-CRICK
A
G
87
A
O6
G
78
1_555
B
C
35
B
N4
C
35
1_555
hydrog
G-C PAIR
A
G
88
A
N1
G
79
1_555
B
C
34
B
O2
C
34
1_555
hydrog
WATSON-CRICK
A
C
89
A
N3
C
80
1_555
B
G
33
B
N1
G
33
1_555
hydrog
WATSON-CRICK
A
C
89
A
N4
C
80
1_555
B
G
33
B
O6
G
33
1_555
hydrog
WATSON-CRICK
A
C
89
A
O2
C
80
1_555
B
G
33
B
N2
G
33
1_555
hydrog
WATSON-CRICK
B
GTP
1
B
N1
GTP
1
1_555
B
C
71
B
N3
C
71
1_555
hydrog
WATSON-CRICK
B
GTP
1
B
N2
GTP
1
1_555
B
C
71
B
O2
C
71
1_555
hydrog
WATSON-CRICK
B
GTP
1
B
O6
GTP
1
1_555
B
C
71
B
N4
C
71
1_555
hydrog
WATSON-CRICK
B
C
2
B
N3
C
2
1_555
B
G
70
B
N1
G
70
1_555
hydrog
WATSON-CRICK
B
C
2
B
N4
C
2
1_555
B
G
70
B
O6
G
70
1_555
hydrog
WATSON-CRICK
B
C
2
B
O2
C
2
1_555
B
G
70
B
N2
G
70
1_555
hydrog
WATSON-CRICK
B
G
3
B
N1
G
3
1_555
B
C
69
B
N3
C
69
1_555
hydrog
WATSON-CRICK
B
G
3
B
N2
G
3
1_555
B
C
69
B
O2
C
69
1_555
hydrog
WATSON-CRICK
B
G
3
B
O6
G
3
1_555
B
C
69
B
N4
C
69
1_555
hydrog
WATSON-CRICK
B
G
4
B
N1
G
4
1_555
B
C
68
B
N3
C
68
1_555
hydrog
WATSON-CRICK
B
G
4
B
N2
G
4
1_555
B
C
68
B
O2
C
68
1_555
hydrog
WATSON-CRICK
B
G
4
B
O6
G
4
1_555
B
C
68
B
N4
C
68
1_555
hydrog
WATSON-CRICK
B
A
5
B
N1
A
5
1_555
B
U
67
B
N3
U
67
1_555
hydrog
WATSON-CRICK
B
A
5
B
N6
A
5
1_555
B
U
67
B
O4
U
67
1_555
hydrog
WATSON-CRICK
B
A
6
B
N1
A
6
1_555
B
U
66
B
N3
U
66
1_555
hydrog
WATSON-CRICK
B
A
6
B
N6
A
6
1_555
B
U
66
B
O4
U
66
1_555
hydrog
WATSON-CRICK
B
G
7
B
N1
G
7
1_555
B
C
65
B
N3
C
65
1_555
hydrog
WATSON-CRICK
B
G
7
B
N2
G
7
1_555
B
C
65
B
O2
C
65
1_555
hydrog
WATSON-CRICK
B
G
7
B
O6
G
7
1_555
B
C
65
B
N4
C
65
1_555
hydrog
REVERSED HOOGSTEEN
B
U
8
B
N3
U
8
1_555
B
A
14
B
N7
A
14
1_555
hydrog
REVERSED HOOGSTEEN
B
U
8
B
O2
U
8
1_555
B
A
14
B
N6
A
14
1_555
hydrog
TYPE_2_PAIR
B
A
9
B
N6
A
9
1_555
B
A
22
B
N7
A
22
1_555
hydrog
TYPE_2_PAIR
B
A
9
B
N7
A
9
1_555
B
A
22
B
N6
A
22
1_555
hydrog
WATSON-CRICK
B
G
10
B
N1
G
10
1_555
B
C
24
B
N3
C
24
1_555
hydrog
WATSON-CRICK
B
G
10
B
N2
G
10
1_555
B
C
24
B
O2
C
24
1_555
hydrog
WATSON-CRICK
B
G
10
B
O6
G
10
1_555
B
C
24
B
N4
C
24
1_555
hydrog
WATSON-CRICK
B
U
11
B
N3
U
11
1_555
B
A
23
B
N1
A
23
1_555
hydrog
WATSON-CRICK
B
U
11
B
O4
U
11
1_555
B
A
23
B
N6
A
23
1_555
hydrog
WATSON-CRICK
B
U
12
B
N3
U
12
1_555
B
A
22
B
N1
A
22
1_555
hydrog
WATSON-CRICK
B
U
12
B
O4
U
12
1_555
B
A
22
B
N6
A
22
1_555
hydrog
C-G PAIR
B
C
13
B
N4
C
13
1_555
B
G
21
B
O6
G
21
1_555
hydrog
REVERSED WATSON-CRICK
B
G
15
B
N1
G
15
1_555
B
C
47
B
O2
C
47
1_555
hydrog
REVERSED WATSON-CRICK
B
G
15
B
N2
G
15
1_555
B
C
47
B
N3
C
47
1_555
hydrog
G-U MISPAIR
B
G
17
B
N1
G
17
1_555
B
U
54
B
O2
U
54
1_555
hydrog
G-U MISPAIR
B
G
18
B
N2
G
18
1_555
B
U
19
B
O4
U
19
1_555
hydrog
WATSON-CRICK
B
G
18
B
N1
G
18
1_555
B
C
55
B
N3
C
55
1_555
hydrog
WATSON-CRICK
B
G
18
B
N2
G
18
1_555
B
C
55
B
O2
C
55
1_555
hydrog
WATSON-CRICK
B
G
18
B
O6
G
18
1_555
B
C
55
B
N4
C
55
1_555
hydrog
G-G MISPAIR
B
G
21
B
N7
G
21
1_555
B
G
45
B
N1
G
45
1_555
hydrog
TYPE_8_PAIR
B
A
25
B
N1
A
25
1_555
B
G
43
B
N1
G
43
1_555
hydrog
TYPE_8_PAIR
B
A
25
B
N6
A
25
1_555
B
G
43
B
O6
G
43
1_555
hydrog
WATSON-CRICK
B
C
26
B
N3
C
26
1_555
B
G
42
B
N1
G
42
1_555
hydrog
WATSON-CRICK
B
C
26
B
N4
C
26
1_555
B
G
42
B
O6
G
42
1_555
hydrog
WATSON-CRICK
B
C
26
B
O2
C
26
1_555
B
G
42
B
N2
G
42
1_555
hydrog
WATSON-CRICK
B
C
27
B
N3
C
27
1_555
B
G
41
B
N1
G
41
1_555
hydrog
WATSON-CRICK
B
C
27
B
N4
C
27
1_555
B
G
41
B
O6
G
41
1_555
hydrog
WATSON-CRICK
B
C
27
B
O2
C
27
1_555
B
G
41
B
N2
G
41
1_555
hydrog
WATSON-CRICK
B
A
28
B
N1
A
28
1_555
B
U
40
B
N3
U
40
1_555
hydrog
WATSON-CRICK
B
A
28
B
N6
A
28
1_555
B
U
40
B
O4
U
40
1_555
hydrog
WATSON-CRICK
B
C
29
B
N3
C
29
1_555
B
G
39
B
N1
G
39
1_555
hydrog
WATSON-CRICK
B
C
29
B
N4
C
29
1_555
B
G
39
B
O6
G
39
1_555
hydrog
WATSON-CRICK
B
C
29
B
O2
C
29
1_555
B
G
39
B
N2
G
39
1_555
hydrog
WATSON-CRICK
B
C
30
B
N3
C
30
1_555
B
G
38
B
N1
G
38
1_555
hydrog
WATSON-CRICK
B
C
30
B
N4
C
30
1_555
B
G
38
B
O6
G
38
1_555
hydrog
WATSON-CRICK
B
C
30
B
O2
C
30
1_555
B
G
38
B
N2
G
38
1_555
hydrog
TYPE_28_PAIR
B
G
48
B
N1
G
48
1_555
B
U
64
B
O2
U
64
1_555
hydrog
TYPE_28_PAIR
B
G
48
B
O6
G
48
1_555
B
U
64
B
N3
U
64
1_555
hydrog
WATSON-CRICK
B
C
49
B
N3
C
49
1_555
B
G
63
B
N1
G
63
1_555
hydrog
WATSON-CRICK
B
C
49
B
N4
C
49
1_555
B
G
63
B
O6
G
63
1_555
hydrog
WATSON-CRICK
B
C
49
B
O2
C
49
1_555
B
G
63
B
N2
G
63
1_555
hydrog
WATSON-CRICK
B
G
50
B
N1
G
50
1_555
B
C
62
B
N3
C
62
1_555
hydrog
WATSON-CRICK
B
G
50
B
N2
G
50
1_555
B
C
62
B
O2
C
62
1_555
hydrog
WATSON-CRICK
B
G
50
B
O6
G
50
1_555
B
C
62
B
N4
C
62
1_555
hydrog
WATSON-CRICK
B
G
51
B
N1
G
51
1_555
B
C
61
B
N3
C
61
1_555
hydrog
WATSON-CRICK
B
G
51
B
N2
G
51
1_555
B
C
61
B
O2
C
61
1_555
hydrog
WATSON-CRICK
B
G
51
B
O6
G
51
1_555
B
C
61
B
N4
C
61
1_555
hydrog
WATSON-CRICK
B
G
52
B
N1
G
52
1_555
B
C
60
B
N3
C
60
1_555
hydrog
WATSON-CRICK
B
G
52
B
N2
G
52
1_555
B
C
60
B
O2
C
60
1_555
hydrog
WATSON-CRICK
B
G
52
B
O6
G
52
1_555
B
C
60
B
N4
C
60
1_555
hydrog
REVERSED HOOGSTEEN
B
U
53
B
N3
U
53
1_555
B
A
57
B
N7
A
57
1_555
hydrog
REVERSED HOOGSTEEN
B
U
53
B
O2
U
53
1_555
B
A
57
B
N6
A
57
1_555
hydrog
WATSON-CRICK
C
GTP
10
C
N1
GTP
1
1_555
C
C
95
C
N3
C
86
1_555
hydrog
WATSON-CRICK
C
GTP
10
C
N2
GTP
1
1_555
C
C
95
C
O2
C
86
1_555
hydrog
WATSON-CRICK
C
GTP
10
C
O6
GTP
1
1_555
C
C
95
C
N4
C
86
1_555
hydrog
WATSON-CRICK
C
G
11
C
N1
G
2
1_555
C
C
94
C
N3
C
85
1_555
hydrog
WATSON-CRICK
C
G
11
C
N2
G
2
1_555
C
C
94
C
O2
C
85
1_555
hydrog
WATSON-CRICK
C
G
11
C
O6
G
2
1_555
C
C
94
C
N4
C
85
1_555
hydrog
WATSON-CRICK
C
A
12
C
N1
A
3
1_555
C
U
93
C
N3
U
84
1_555
hydrog
WATSON-CRICK
C
A
12
C
N6
A
3
1_555
C
U
93
C
O4
U
84
1_555
hydrog
A-G MISPAIR
C
A
13
C
N6
A
4
1_555
C
G
91
C
O6
G
82
1_555
hydrog
WATSON-CRICK
C
A
13
C
N1
A
4
1_555
C
U
92
C
N3
U
83
1_555
hydrog
WATSON-CRICK
C
A
13
C
N6
A
4
1_555
C
U
92
C
O4
U
83
1_555
hydrog
A-A MISPAIR
C
A
17
C
N1
A
8
1_555
D
A
36
D
N6
A
36
1_555
hydrog
U-A PAIR
C
U
18
C
N3
U
9
1_555
D
A
37
D
N1
A
37
1_555
hydrog
TYPE_2_PAIR
C
A
19
C
N6
A
10
1_555
C
A
84
C
N7
A
75
1_555
hydrog
TYPE_2_PAIR
C
A
19
C
N7
A
10
1_555
C
A
84
C
N6
A
75
1_555
hydrog
G-U MISPAIR
C
G
20
C
N2
G
11
1_555
C
U
21
C
O4
U
12
1_555
hydrog
REVERSED HOOGSTEEN
C
U
21
C
N3
U
12
1_555
C
A
83
C
N7
A
74
1_555
hydrog
REVERSED HOOGSTEEN
C
U
21
C
O2
U
12
1_555
C
A
83
C
N6
A
74
1_555
hydrog
U-A PAIR
C
U
21
C
O2
U
12
1_555
C
A
84
C
N6
A
75
1_555
hydrog
TYPE_11_PAIR
C
A
22
C
N6
A
13
1_555
C
G
82
C
N3
G
73
1_555
hydrog
TYPE_11_PAIR
C
A
22
C
N7
A
13
1_555
C
G
82
C
N2
G
73
1_555
hydrog
G-U MISPAIR
C
G
23
C
N1
G
14
1_555
C
U
81
C
O2
U
72
1_555
hydrog
WATSON-CRICK
C
U
24
C
N3
U
15
1_555
C
A
80
C
N1
A
71
1_555
hydrog
WATSON-CRICK
C
U
24
C
O4
U
15
1_555
C
A
80
C
N6
A
71
1_555
hydrog
WATSON-CRICK
C
U
25
C
N3
U
16
1_555
C
A
79
C
N1
A
70
1_555
hydrog
WATSON-CRICK
C
U
25
C
O4
U
16
1_555
C
A
79
C
N6
A
70
1_555
hydrog
WATSON-CRICK
C
A
26
C
N1
A
17
1_555
C
U
78
C
N3
U
69
1_555
hydrog
WATSON-CRICK
C
A
26
C
N6
A
17
1_555
C
U
78
C
O4
U
69
1_555
hydrog
WATSON-CRICK
C
A
27
C
N1
A
18
1_555
C
U
77
C
N3
U
68
1_555
hydrog
WATSON-CRICK
C
A
27
C
N6
A
18
1_555
C
U
77
C
O4
U
68
1_555
hydrog
WATSON-CRICK
C
C
28
C
N3
C
19
1_555
C
G
76
C
N1
G
67
1_555
hydrog
WATSON-CRICK
C
C
28
C
N4
C
19
1_555
C
G
76
C
O6
G
67
1_555
hydrog
WATSON-CRICK
C
C
28
C
O2
C
19
1_555
C
G
76
C
N2
G
67
1_555
hydrog
WATSON-CRICK
C
C
29
C
N3
C
20
1_555
C
G
75
C
N1
G
66
1_555
hydrog
WATSON-CRICK
C
C
29
C
N4
C
20
1_555
C
G
75
C
O6
G
66
1_555
hydrog
WATSON-CRICK
C
C
29
C
O2
C
20
1_555
C
G
75
C
N2
G
66
1_555
hydrog
C-C MISPAIR
C
C
30
C
O2
C
21
1_555
C
C
32
C
N4
C
23
1_555
hydrog
C-A MISPAIR
C
C
30
C
N3
C
21
1_555
C
A
73
C
N6
A
64
1_555
hydrog
WATSON-CRICK
C
U
33
C
N3
U
24
1_555
C
A
73
C
N1
A
64
1_555
hydrog
WATSON-CRICK
C
U
33
C
O4
U
24
1_555
C
A
73
C
N6
A
64
1_555
hydrog
WATSON-CRICK
C
C
34
C
N3
C
25
1_555
C
G
72
C
N1
G
63
1_555
hydrog
WATSON-CRICK
C
C
34
C
N4
C
25
1_555
C
G
72
C
O6
G
63
1_555
hydrog
WATSON-CRICK
C
C
34
C
O2
C
25
1_555
C
G
72
C
N2
G
63
1_555
hydrog
WATSON-CRICK
C
U
35
C
N3
U
26
1_555
C
A
71
C
N1
A
62
1_555
hydrog
WATSON-CRICK
C
U
35
C
O4
U
26
1_555
C
A
71
C
N6
A
62
1_555
hydrog
WATSON-CRICK
C
U
36
C
N3
U
27
1_555
C
A
70
C
N1
A
61
1_555
hydrog
WATSON-CRICK
C
U
36
C
O4
U
27
1_555
C
A
70
C
N6
A
61
1_555
hydrog
WATSON-CRICK
C
C
37
C
N3
C
28
1_555
C
G
69
C
N1
G
60
1_555
hydrog
WATSON-CRICK
C
C
37
C
N4
C
28
1_555
C
G
69
C
O6
G
60
1_555
hydrog
WATSON-CRICK
C
C
37
C
O2
C
28
1_555
C
G
69
C
N2
G
60
1_555
hydrog
TYPE_10_PAIR
C
G
42
C
N2
G
33
1_555
C
A
61
C
N1
A
52
1_555
hydrog
TYPE_10_PAIR
C
G
42
C
N3
G
33
1_555
C
A
61
C
N6
A
52
1_555
hydrog
C-G PAIR
C
C
43
C
N4
C
34
1_555
C
G
55
C
O6
G
46
1_555
hydrog
WATSON-CRICK
C
C
43
C
N3
C
34
1_555
C
G
62
C
N1
G
53
1_555
hydrog
WATSON-CRICK
C
C
43
C
N4
C
34
1_555
C
G
62
C
O6
G
53
1_555
hydrog
WATSON-CRICK
C
C
43
C
O2
C
34
1_555
C
G
62
C
N2
G
53
1_555
hydrog
G-G MISPAIR
C
G
44
C
O6
G
35
1_555
C
G
56
C
N1
G
47
1_555
hydrog
TYPE_10_PAIR
C
A
45
C
N1
A
36
1_555
C
G
58
C
N2
G
49
1_555
hydrog
TYPE_10_PAIR
C
A
45
C
N6
A
36
1_555
C
G
58
C
N3
G
49
1_555
hydrog
TYPE_28_PAIR
C
G
46
C
N1
G
37
1_555
C
U
68
C
O2
U
59
1_555
hydrog
TYPE_28_PAIR
C
G
46
C
O6
G
37
1_555
C
U
68
C
N3
U
59
1_555
hydrog
WATSON-CRICK
C
C
47
C
N3
C
38
1_555
C
G
67
C
N1
G
58
1_555
hydrog
WATSON-CRICK
C
C
47
C
N4
C
38
1_555
C
G
67
C
O6
G
58
1_555
hydrog
WATSON-CRICK
C
C
47
C
O2
C
38
1_555
C
G
67
C
N2
G
58
1_555
hydrog
WATSON-CRICK
C
C
48
C
N3
C
39
1_555
C
G
66
C
N1
G
57
1_555
hydrog
WATSON-CRICK
C
C
48
C
N4
C
39
1_555
C
G
66
C
O6
G
57
1_555
hydrog
WATSON-CRICK
C
C
48
C
O2
C
39
1_555
C
G
66
C
N2
G
57
1_555
hydrog
WATSON-CRICK
C
G
49
C
N1
G
40
1_555
C
C
65
C
N3
C
56
1_555
hydrog
WATSON-CRICK
C
G
49
C
N2
G
40
1_555
C
C
65
C
O2
C
56
1_555
hydrog
WATSON-CRICK
C
G
49
C
O6
G
40
1_555
C
C
65
C
N4
C
56
1_555
hydrog
WATSON-CRICK
C
G
50
C
N1
G
41
1_555
C
C
64
C
N3
C
55
1_555
hydrog
WATSON-CRICK
C
G
50
C
N2
G
41
1_555
C
C
64
C
O2
C
55
1_555
hydrog
WATSON-CRICK
C
G
50
C
O6
G
41
1_555
C
C
64
C
N4
C
55
1_555
hydrog
WATSON-CRICK
C
G
51
C
N1
G
42
1_555
C
C
63
C
N3
C
54
1_555
hydrog
WATSON-CRICK
C
G
51
C
N2
G
42
1_555
C
C
63
C
O2
C
54
1_555
hydrog
WATSON-CRICK
C
G
51
C
O6
G
42
1_555
C
C
63
C
N4
C
54
1_555
hydrog
REVERSED HOOGSTEEN
C
U
57
C
N3
U
48
1_555
C
A
61
C
N7
A
52
1_555
hydrog
REVERSED HOOGSTEEN
C
U
57
C
O2
U
48
1_555
C
A
61
C
N6
A
52
1_555
hydrog
C-A MISPAIR
C
C
86
C
N4
C
77
1_555
D
A
36
D
N3
A
36
1_555
hydrog
WATSON-CRICK
C
G
87
C
N1
G
78
1_555
D
C
35
D
N3
C
35
1_555
hydrog
WATSON-CRICK
C
G
87
C
N2
G
78
1_555
D
C
35
D
O2
C
35
1_555
hydrog
WATSON-CRICK
C
G
87
C
O6
G
78
1_555
D
C
35
D
N4
C
35
1_555
hydrog
G-C PAIR
C
G
88
C
N2
G
79
1_555
D
C
34
D
O2
C
34
1_555
hydrog
WATSON-CRICK
C
C
89
C
N3
C
80
1_555
D
G
33
D
N1
G
33
1_555
hydrog
WATSON-CRICK
C
C
89
C
N4
C
80
1_555
D
G
33
D
O6
G
33
1_555
hydrog
WATSON-CRICK
C
C
89
C
O2
C
80
1_555
D
G
33
D
N2
G
33
1_555
hydrog
WATSON-CRICK
D
GTP
1
D
N1
GTP
1
1_555
D
C
71
D
N3
C
71
1_555
hydrog
WATSON-CRICK
D
GTP
1
D
N2
GTP
1
1_555
D
C
71
D
O2
C
71
1_555
hydrog
WATSON-CRICK
D
GTP
1
D
O6
GTP
1
1_555
D
C
71
D
N4
C
71
1_555
hydrog
WATSON-CRICK
D
C
2
D
N3
C
2
1_555
D
G
70
D
N1
G
70
1_555
hydrog
WATSON-CRICK
D
C
2
D
N4
C
2
1_555
D
G
70
D
O6
G
70
1_555
hydrog
WATSON-CRICK
D
C
2
D
O2
C
2
1_555
D
G
70
D
N2
G
70
1_555
hydrog
WATSON-CRICK
D
G
3
D
N1
G
3
1_555
D
C
69
D
N3
C
69
1_555
hydrog
WATSON-CRICK
D
G
3
D
N2
G
3
1_555
D
C
69
D
O2
C
69
1_555
hydrog
WATSON-CRICK
D
G
3
D
O6
G
3
1_555
D
C
69
D
N4
C
69
1_555
hydrog
WATSON-CRICK
D
G
4
D
N1
G
4
1_555
D
C
68
D
N3
C
68
1_555
hydrog
WATSON-CRICK
D
G
4
D
N2
G
4
1_555
D
C
68
D
O2
C
68
1_555
hydrog
WATSON-CRICK
D
G
4
D
O6
G
4
1_555
D
C
68
D
N4
C
68
1_555
hydrog
WATSON-CRICK
D
A
5
D
N1
A
5
1_555
D
U
67
D
N3
U
67
1_555
hydrog
WATSON-CRICK
D
A
5
D
N6
A
5
1_555
D
U
67
D
O4
U
67
1_555
hydrog
WATSON-CRICK
D
A
6
D
N1
A
6
1_555
D
U
66
D
N3
U
66
1_555
hydrog
WATSON-CRICK
D
A
6
D
N6
A
6
1_555
D
U
66
D
O4
U
66
1_555
hydrog
WATSON-CRICK
D
G
7
D
N1
G
7
1_555
D
C
65
D
N3
C
65
1_555
hydrog
WATSON-CRICK
D
G
7
D
N2
G
7
1_555
D
C
65
D
O2
C
65
1_555
hydrog
WATSON-CRICK
D
G
7
D
O6
G
7
1_555
D
C
65
D
N4
C
65
1_555
hydrog
REVERSED HOOGSTEEN
D
U
8
D
N3
U
8
1_555
D
A
14
D
N7
A
14
1_555
hydrog
REVERSED HOOGSTEEN
D
U
8
D
O2
U
8
1_555
D
A
14
D
N6
A
14
1_555
hydrog
A-G MISPAIR
D
A
9
D
N6
A
9
1_555
D
G
21
D
N7
G
21
1_555
hydrog
TYPE_2_PAIR
D
A
9
D
N6
A
9
1_555
D
A
22
D
N7
A
22
1_555
hydrog
TYPE_2_PAIR
D
A
9
D
N7
A
9
1_555
D
A
22
D
N6
A
22
1_555
hydrog
WATSON-CRICK
D
G
10
D
N1
G
10
1_555
D
C
24
D
N3
C
24
1_555
hydrog
WATSON-CRICK
D
G
10
D
N2
G
10
1_555
D
C
24
D
O2
C
24
1_555
hydrog
WATSON-CRICK
D
G
10
D
O6
G
10
1_555
D
C
24
D
N4
C
24
1_555
hydrog
WATSON-CRICK
D
U
11
D
N3
U
11
1_555
D
A
23
D
N1
A
23
1_555
hydrog
WATSON-CRICK
D
U
11
D
O4
U
11
1_555
D
A
23
D
N6
A
23
1_555
hydrog
WATSON-CRICK
D
U
12
D
N3
U
12
1_555
D
A
22
D
N1
A
22
1_555
hydrog
WATSON-CRICK
D
U
12
D
O4
U
12
1_555
D
A
22
D
N6
A
22
1_555
hydrog
WATSON-CRICK
D
C
13
D
N3
C
13
1_555
D
G
21
D
N1
G
21
1_555
hydrog
WATSON-CRICK
D
C
13
D
N4
C
13
1_555
D
G
21
D
O6
G
21
1_555
hydrog
WATSON-CRICK
D
C
13
D
O2
C
13
1_555
D
G
21
D
N2
G
21
1_555
hydrog
REVERSED WATSON-CRICK
D
G
15
D
N1
G
15
1_555
D
C
47
D
O2
C
47
1_555
hydrog
REVERSED WATSON-CRICK
D
G
15
D
N2
G
15
1_555
D
C
47
D
N3
C
47
1_555
hydrog
G-U MISPAIR
D
G
17
D
N1
G
17
1_555
D
U
54
D
O2
U
54
1_555
hydrog
G-U MISPAIR
D
G
18
D
N2
G
18
1_555
D
U
19
D
O4
U
19
1_555
hydrog
WATSON-CRICK
D
G
18
D
N1
G
18
1_555
D
C
55
D
N3
C
55
1_555
hydrog
WATSON-CRICK
D
G
18
D
N2
G
18
1_555
D
C
55
D
O2
C
55
1_555
hydrog
WATSON-CRICK
D
G
18
D
O6
G
18
1_555
D
C
55
D
N4
C
55
1_555
hydrog
G-G MISPAIR
D
G
21
D
N7
G
21
1_555
D
G
45
D
N1
G
45
1_555
hydrog
TYPE_8_PAIR
D
A
25
D
N1
A
25
1_555
D
G
43
D
N1
G
43
1_555
hydrog
TYPE_8_PAIR
D
A
25
D
N6
A
25
1_555
D
G
43
D
O6
G
43
1_555
hydrog
WATSON-CRICK
D
C
26
D
N3
C
26
1_555
D
G
42
D
N1
G
42
1_555
hydrog
WATSON-CRICK
D
C
26
D
N4
C
26
1_555
D
G
42
D
O6
G
42
1_555
hydrog
WATSON-CRICK
D
C
26
D
O2
C
26
1_555
D
G
42
D
N2
G
42
1_555
hydrog
WATSON-CRICK
D
C
27
D
N3
C
27
1_555
D
G
41
D
N1
G
41
1_555
hydrog
WATSON-CRICK
D
C
27
D
N4
C
27
1_555
D
G
41
D
O6
G
41
1_555
hydrog
WATSON-CRICK
D
C
27
D
O2
C
27
1_555
D
G
41
D
N2
G
41
1_555
hydrog
WATSON-CRICK
D
A
28
D
N1
A
28
1_555
D
U
40
D
N3
U
40
1_555
hydrog
WATSON-CRICK
D
A
28
D
N6
A
28
1_555
D
U
40
D
O4
U
40
1_555
hydrog
WATSON-CRICK
D
C
29
D
N3
C
29
1_555
D
G
39
D
N1
G
39
1_555
hydrog
WATSON-CRICK
D
C
29
D
N4
C
29
1_555
D
G
39
D
O6
G
39
1_555
hydrog
WATSON-CRICK
D
C
29
D
O2
C
29
1_555
D
G
39
D
N2
G
39
1_555
hydrog
WATSON-CRICK
D
C
30
D
N3
C
30
1_555
D
G
38
D
N1
G
38
1_555
hydrog
WATSON-CRICK
D
C
30
D
N4
C
30
1_555
D
G
38
D
O6
G
38
1_555
hydrog
WATSON-CRICK
D
C
30
D
O2
C
30
1_555
D
G
38
D
N2
G
38
1_555
hydrog
TYPE_28_PAIR
D
G
48
D
N1
G
48
1_555
D
U
64
D
O2
U
64
1_555
hydrog
TYPE_28_PAIR
D
G
48
D
O6
G
48
1_555
D
U
64
D
N3
U
64
1_555
hydrog
WATSON-CRICK
D
C
49
D
N3
C
49
1_555
D
G
63
D
N1
G
63
1_555
hydrog
WATSON-CRICK
D
C
49
D
N4
C
49
1_555
D
G
63
D
O6
G
63
1_555
hydrog
WATSON-CRICK
D
C
49
D
O2
C
49
1_555
D
G
63
D
N2
G
63
1_555
hydrog
WATSON-CRICK
D
G
50
D
N1
G
50
1_555
D
C
62
D
N3
C
62
1_555
hydrog
WATSON-CRICK
D
G
50
D
N2
G
50
1_555
D
C
62
D
O2
C
62
1_555
hydrog
WATSON-CRICK
D
G
50
D
O6
G
50
1_555
D
C
62
D
N4
C
62
1_555
hydrog
WATSON-CRICK
D
G
51
D
N1
G
51
1_555
D
C
61
D
N3
C
61
1_555
hydrog
WATSON-CRICK
D
G
51
D
N2
G
51
1_555
D
C
61
D
O2
C
61
1_555
hydrog
WATSON-CRICK
D
G
51
D
O6
G
51
1_555
D
C
61
D
N4
C
61
1_555
hydrog
WATSON-CRICK
D
G
52
D
N1
G
52
1_555
D
C
60
D
N3
C
60
1_555
hydrog
WATSON-CRICK
D
G
52
D
N2
G
52
1_555
D
C
60
D
O2
C
60
1_555
hydrog
WATSON-CRICK
D
G
52
D
O6
G
52
1_555
D
C
60
D
N4
C
60
1_555
hydrog
REVERSED HOOGSTEEN
D
U
53
D
N3
U
53
1_555
D
A
57
D
N7
A
57
1_555
hydrog
REVERSED HOOGSTEEN
D
U
53
D
O2
U
53
1_555
D
A
57
D
N6
A
57
1_555
RNA
RNA-RNA complex, base stacking, T-loop, RNA binding, RNA
chain C
chain D
C
GTP
10
C
GTP
1
C
C
95
C
C
86
chain 'C'
D
GTP
1
D
GTP
1
D
C
73
D
C
73
chain 'D'
4MGN
PDB
1
4MGN
GGAAUCAAUAGUAGUUAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUAAUGAAACGGC
AGUUCC
4MGN
PDB
2
4MGN
GCGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAGUCCCGUCUUCCGCUCCA
10
95
4MGN
10
95
4MGN
A
1
1
86
10
95
4MGN
10
95
4MGN
C
1
1
86
1
75
4MGN
1
75
4MGN
B
2
1
75
1
75
4MGN
1
75
4MGN
D
2
1
75
BINDING SITE FOR RESIDUE MG A 101
A
MG
101
Software
1
BINDING SITE FOR RESIDUE MG A 102
A
MG
102
Software
4
BINDING SITE FOR RESIDUE MG A 103
A
MG
103
Software
5
BINDING SITE FOR RESIDUE MG A 104
A
MG
104
Software
1
BINDING SITE FOR RESIDUE MG B 101
B
MG
101
Software
2
BINDING SITE FOR RESIDUE MG B 102
B
MG
102
Software
2
BINDING SITE FOR RESIDUE MG B 103
B
MG
103
Software
3
BINDING SITE FOR RESIDUE MG B 104
B
MG
104
Software
2
BINDING SITE FOR RESIDUE MG C 101
C
MG
101
Software
1
BINDING SITE FOR RESIDUE MG C 102
C
MG
102
Software
1
BINDING SITE FOR RESIDUE MG C 103
C
MG
103
Software
4
BINDING SITE FOR RESIDUE MG C 104
C
MG
104
Software
1
BINDING SITE FOR RESIDUE MG D 102
D
MG
102
Software
3
BINDING SITE FOR RESIDUE MG D 103
D
MG
103
Software
2
BINDING SITE FOR RESIDUE MG D 104
D
MG
104
Software
2
BINDING SITE FOR RESIDUE MG D 105
D
MG
105
Software
1
A
G
58
A
G
49
1
1_555
A
G
55
A
G
46
4
1_555
A
G
56
A
G
47
4
1_555
A
G
62
A
G
53
4
1_555
B
C
55
B
C
55
4
1_555
A
C
47
A
C
38
5
1_555
A
C
48
A
C
39
5
1_555
A
G
59
A
G
50
5
1_555
A
G
60
A
G
51
5
1_555
C
G
59
C
G
50
5
1_455
A
G
58
A
G
49
1
1_555
B
GTP
1
B
GTP
1
2
1_555
B
G
70
B
G
70
2
3_555
B
G
3
B
G
3
2
1_555
B
G
4
B
G
4
2
1_555
B
U
8
B
U
8
3
1_555
B
A
9
B
A
9
3
1_555
B
U
12
B
U
12
3
1_555
B
G
41
B
G
41
2
1_555
B
G
42
B
G
42
2
1_555
C
G
58
C
G
49
1
1_555
C
G
42
C
G
33
1
1_555
C
G
55
C
G
46
4
1_555
C
G
56
C
G
47
4
1_555
C
G
62
C
G
53
4
1_555
D
C
55
D
C
55
4
1_555
C
G
50
C
G
41
1
1_555
D
A
9
D
A
9
3
1_555
D
U
11
D
U
11
3
1_555
D
U
12
D
U
12
3
1_555
D
U
54
D
U
54
2
1_555
D
A
57
D
A
57
2
1_555
D
A
25
D
A
25
2
1_555
D
C
26
D
C
26
2
1_555
D
C
26
D
C
26
1
1_555
20
C 2 2 21