0.007746
0.004472
0.000000
-0.000000
0.008944
0.000000
0.000000
-0.000000
0.011839
0.000000
0.000000
0.000000
Chen, B.
Gan, J.
Yang, C.G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
129.099
129.099
84.466
C11 H18 N3 O7 P S
367.315
2'-deoxy-N-(2-sulfanylethyl)cytidine 5'-(dihydrogen phosphate)
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
C
N
6
R
C
N
7
N
O
N
8
S
C
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
N
N
13
N
C
N
14
N
O
N
15
N
N
N
16
N
C
N
17
N
N
N
18
N
C
N
19
N
C
N
20
N
S
N
21
N
C
N
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
O
N
41
N
H
N
42
N
N
N
43
S
C
N
44
N
C
N
45
N
O
N
46
N
C
N
47
N
O
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
N
N
56
S
C
N
57
N
C
N
58
N
O
N
59
N
C
N
60
N
C
N
61
N
C
N
62
N
N
N
63
N
C
N
64
N
N
N
65
N
N
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
N
N
83
S
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
S
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
O
N
107
N
O
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
N
N
116
R
C
N
117
N
C
N
118
N
O
N
119
N
C
N
120
N
S
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
O
N
130
N
P
N
131
N
O
N
132
N
O
N
133
N
O
N
134
N
C
N
135
R
C
N
136
N
O
N
137
S
C
N
138
N
O
N
139
N
C
N
140
R
C
Y
141
N
N
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
N
146
N
N
Y
147
N
N
Y
148
N
C
Y
149
N
N
Y
150
N
C
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
O
N
166
N
P
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
C
N
171
R
C
N
172
N
O
N
173
S
C
N
174
N
O
N
175
N
C
N
176
R
C
N
177
N
N
N
178
N
C
N
179
N
O
N
180
N
N
N
181
N
C
N
182
N
N
N
183
N
C
N
184
N
C
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
O
N
200
N
P
N
201
N
O
N
202
N
O
N
203
N
O
N
204
N
C
N
205
R
C
N
206
N
O
N
207
S
C
N
208
N
O
N
209
N
C
N
210
R
C
Y
211
N
N
Y
212
N
C
Y
213
N
N
Y
214
N
C
N
215
N
C
N
216
N
O
N
217
N
N
N
218
N
C
N
219
N
N
N
220
N
N
Y
221
N
C
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
O
N
237
N
P
N
238
N
O
N
239
N
O
N
240
N
O
N
241
N
C
N
242
R
C
N
243
N
O
N
244
S
C
N
245
N
O
N
246
N
C
N
247
R
C
N
248
N
N
N
249
N
C
N
250
N
O
N
251
N
N
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
C
N
279
N
O
N
280
N
N
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
O
N
300
N
O
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
N
C
N
313
N
C
N
314
N
O
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
N
Y
328
N
C
Y
329
N
C
Y
330
N
N
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
S
C
N
347
N
C
N
348
N
C
N
349
N
C
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
N
369
N
C
N
370
N
C
N
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
N
391
N
C
N
392
N
C
N
393
N
C
N
394
N
N
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
N
N
412
S
C
N
413
N
C
N
414
N
O
N
415
N
C
N
416
N
C
N
417
N
S
N
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
MG
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
N
C
N
460
N
C
N
461
N
C
N
462
N
O
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
N
N
473
S
C
N
474
N
C
N
475
N
O
N
476
N
C
N
477
N
O
N
478
N
O
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
N
N
487
S
C
N
488
N
C
N
489
N
O
N
490
R
C
N
491
N
O
N
492
N
C
N
493
N
O
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
N
N
504
S
C
N
505
N
C
N
506
N
O
N
507
N
C
Y
508
N
C
Y
509
N
C
Y
510
N
C
Y
511
N
N
Y
512
N
C
Y
513
N
C
Y
514
N
C
Y
515
N
C
Y
516
N
C
N
517
N
O
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
N
N
531
S
C
N
532
N
C
N
533
N
O
N
534
N
C
Y
535
N
C
Y
536
N
C
Y
537
N
C
Y
538
N
C
Y
539
N
C
Y
540
N
C
N
541
N
O
N
542
N
O
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
552
N
H
N
553
N
H
N
554
N
N
N
555
S
C
N
556
N
C
N
557
N
O
N
558
N
C
N
559
N
C
N
560
N
C
N
561
N
O
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
doub
N
6
N
sing
N
7
N
sing
N
8
N
doub
N
9
N
doub
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
doub
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
Y
148
N
sing
Y
149
N
sing
Y
150
N
doub
N
151
N
sing
Y
152
N
sing
Y
153
N
sing
Y
154
N
doub
N
155
N
sing
Y
156
N
doub
N
157
N
sing
N
158
N
sing
Y
159
N
sing
Y
160
N
doub
N
161
N
sing
Y
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
Y
221
N
sing
Y
222
N
sing
Y
223
N
doub
N
224
N
sing
Y
225
N
sing
N
226
N
sing
Y
227
N
doub
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
Y
331
N
sing
Y
332
N
doub
Y
333
N
doub
N
334
N
sing
Y
335
N
sing
N
336
N
sing
Y
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
doub
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
doub
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
Y
437
N
doub
Y
438
N
sing
Y
439
N
sing
N
440
N
sing
Y
441
N
doub
N
442
N
sing
Y
443
N
doub
N
444
N
sing
Y
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
doub
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
doub
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
doub
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
sing
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
doub
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
Y
506
N
doub
Y
507
N
sing
Y
508
N
sing
N
509
N
sing
Y
510
N
doub
Y
511
N
sing
Y
512
N
sing
N
513
N
sing
Y
514
N
sing
Y
515
N
doub
N
516
N
sing
Y
517
N
doub
N
518
N
sing
Y
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
doub
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
Y
534
N
doub
Y
535
N
sing
Y
536
N
sing
N
537
N
sing
Y
538
N
doub
N
539
N
sing
Y
540
N
doub
N
541
N
sing
Y
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
doub
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
CN
Sci China Chem
1674-7291
57
307
313
10.1007/s11426-013-5029-z
The complex structures of ALKBH2 mutants cross-linked to
dsDNA reveal the conformational swing of β-hairpin
2014
10.2210/pdb4mgt/pdb
pdb_00004mgt
100
1
CCD
2010-02-10
ADSC QUANTUM 315r
Si (111)
SINGLE WAVELENGTH
M
x-ray
1
0.9794
1.0
369194
0.101
1.06
2.600
50.000
13363
99.40
27.60
BL17U
SSRF
0.9794
SYNCHROTRON
SSRF BEAMLINE BL17U
23238.545
Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2
1.14.11.33
UNP residues 56-258
R110A
1
man
polymer
4313.831
DNA1
1
syn
polymer
3993.676
DNA2
1
syn
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
Alkylated DNA repair protein alkB homolog 2, DNA oxidative demethylase ALKBH2, Oxy DC1
no
no
MSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPAKQATYGDAGLTYTFSGLTLSPKPW
IPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVV
RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLG
MSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPAKQATYGDAGLTYTFSGLTLSPKPW
IPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVAVV
RLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLG
A
polypeptide(L)
no
no
(DT)(DC)(DG)(DA)(DC)(DA)(DG)(DT)(DG)(DA)(DG)(DA)(DC)(DA)
TCGACAGTGAGACA
B
polydeoxyribonucleotide
no
yes
(DT)(DG)(DT)(DC)(DT)(DC)(DA)(2YR)(DT)(DG)(DT)(DC)(DG)
TGTCTCAXTGTCG
C
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
ALKBH2, ABH2
9606
Homo sapiens
562
Escherichia coli
1
3.23
61.88
VAPOR DIFFUSION, HANGING DROP
6.5
12% PEG 5000, 100mM sodium chloride, 50mM Magnesium chloride, 100mM cacodylate, pH 6.5, vapor diffusion, hanging drop, temperature 277K
277
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_conn_type
struct_ref_seq_dif
struct_site
repository
Initial release
Non-polymer description
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2014-02-26
1
1
2014-05-28
1
2
2017-11-15
1
3
2023-09-20
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
N
RCSB
Y
RCSB
2013-08-28
REL
REL
0.047
1.091
99.70
29.70
0.070
1.001
100.00
32.00
0.083
1.091
99.90
33.00
0.124
1.046
100.00
33.30
0.195
1.131
99.90
33.40
0.296
1.100
99.80
32.40
0.430
1.006
99.90
29.50
0.604
1.005
99.70
24.40
0.830
0.994
99.30
17.00
0.894
1.046
95.10
9.70
MG
MAGNESIUM ION
Synthesis
sample
Synthesis
sample
3S5A
PDB ENTRY 3S5A
PDB
experimental model
MG
301
4
MG
MG
301
A
MET
55
n
1
MET
55
A
SER
56
n
2
SER
56
A
TRP
57
n
3
TRP
57
A
ARG
58
n
4
ARG
58
A
HIS
59
n
5
HIS
59
A
ILE
60
n
6
ILE
60
A
ARG
61
n
7
ARG
61
A
ALA
62
n
8
ALA
62
A
GLU
63
n
9
GLU
63
A
GLY
64
n
10
GLY
64
A
LEU
65
n
11
LEU
65
A
ASP
66
n
12
ASP
66
A
SER
67
n
13
SER
67
A
SER
68
n
14
SER
68
A
TYR
69
n
15
TYR
69
A
THR
70
n
16
THR
70
A
VAL
71
n
17
VAL
71
A
LEU
72
n
18
LEU
72
A
PHE
73
n
19
PHE
73
A
GLY
74
n
20
GLY
74
A
LYS
75
n
21
LYS
75
A
ALA
76
n
22
ALA
76
A
GLU
77
n
23
GLU
77
A
ALA
78
n
24
ALA
78
A
ASP
79
n
25
ASP
79
A
GLU
80
n
26
GLU
80
A
ILE
81
n
27
ILE
81
A
PHE
82
n
28
PHE
82
A
GLN
83
n
29
GLN
83
A
GLU
84
n
30
GLU
84
A
LEU
85
n
31
LEU
85
A
GLU
86
n
32
GLU
86
A
LYS
87
n
33
LYS
87
A
GLU
88
n
34
GLU
88
A
VAL
89
n
35
VAL
89
A
GLU
90
n
36
GLU
90
A
TYR
91
n
37
TYR
91
A
PHE
92
n
38
PHE
92
A
THR
93
n
39
THR
93
A
GLY
94
n
40
GLY
94
A
ALA
95
n
41
ALA
95
A
LEU
96
n
42
LEU
96
A
ALA
97
n
43
ALA
97
A
ARG
98
n
44
ARG
98
A
VAL
99
n
45
VAL
99
A
GLN
100
n
46
GLN
100
A
VAL
101
n
47
VAL
101
A
PHE
102
n
48
PHE
102
A
GLY
103
n
49
GLY
103
A
LYS
104
n
50
LYS
104
A
TRP
105
n
51
TRP
105
A
HIS
106
n
52
HIS
106
A
SER
107
n
53
SER
107
A
VAL
108
n
54
VAL
108
A
PRO
109
n
55
PRO
109
A
ALA
110
n
56
ALA
110
A
LYS
111
n
57
LYS
111
A
GLN
112
n
58
GLN
112
A
ALA
113
n
59
ALA
113
A
THR
114
n
60
THR
114
A
TYR
115
n
61
TYR
115
A
GLY
116
n
62
GLY
116
A
ASP
117
n
63
ASP
117
A
ALA
118
n
64
ALA
118
A
GLY
119
n
65
GLY
119
A
LEU
120
n
66
LEU
120
A
THR
121
n
67
THR
121
A
TYR
122
n
68
TYR
122
A
THR
123
n
69
THR
123
A
PHE
124
n
70
PHE
124
A
SER
125
n
71
SER
125
A
GLY
126
n
72
GLY
126
A
LEU
127
n
73
LEU
127
A
THR
128
n
74
THR
128
A
LEU
129
n
75
LEU
129
A
SER
130
n
76
SER
130
A
PRO
131
n
77
PRO
131
A
LYS
132
n
78
LYS
132
A
PRO
133
n
79
PRO
133
A
TRP
134
n
80
TRP
134
A
ILE
135
n
81
ILE
135
A
PRO
136
n
82
PRO
136
A
VAL
137
n
83
VAL
137
A
LEU
138
n
84
LEU
138
A
GLU
139
n
85
GLU
139
A
ARG
140
n
86
ARG
140
A
ILE
141
n
87
ILE
141
A
ARG
142
n
88
ARG
142
A
ASP
143
n
89
ASP
143
A
HIS
144
n
90
HIS
144
A
VAL
145
n
91
VAL
145
A
SER
146
n
92
SER
146
A
GLY
147
n
93
GLY
147
A
VAL
148
n
94
VAL
148
A
THR
149
n
95
THR
149
A
GLY
150
n
96
GLY
150
A
GLN
151
n
97
GLN
151
A
THR
152
n
98
THR
152
A
PHE
153
n
99
PHE
153
A
ASN
154
n
100
ASN
154
A
PHE
155
n
101
PHE
155
A
VAL
156
n
102
VAL
156
A
LEU
157
n
103
LEU
157
A
ILE
158
n
104
ILE
158
A
ASN
159
n
105
ASN
159
A
ARG
160
n
106
ARG
160
A
TYR
161
n
107
TYR
161
A
LYS
162
n
108
LYS
162
A
ASP
163
n
109
ASP
163
A
GLY
164
n
110
GLY
164
A
SER
165
n
111
SER
165
A
ASP
166
n
112
ASP
166
A
HIS
167
n
113
HIS
167
A
ILE
168
n
114
ILE
168
A
CYS
169
n
115
CYS
169
A
GLU
170
n
116
GLU
170
A
HIS
171
n
117
HIS
171
A
ARG
172
n
118
ARG
172
A
ASP
173
n
119
ASP
173
A
ASP
174
n
120
ASP
174
A
GLU
175
n
121
GLU
175
A
ARG
176
n
122
ARG
176
A
GLU
177
n
123
GLU
177
A
LEU
178
n
124
LEU
178
A
ALA
179
n
125
ALA
179
A
n
126
180
A
n
127
181
A
SER
182
n
128
SER
182
A
PRO
183
n
129
PRO
183
A
ILE
184
n
130
ILE
184
A
ALA
185
n
131
ALA
185
A
SER
186
n
132
SER
186
A
VAL
187
n
133
VAL
187
A
SER
188
n
134
SER
188
A
PHE
189
n
135
PHE
189
A
GLY
190
n
136
GLY
190
A
ALA
191
n
137
ALA
191
A
SER
192
n
138
SER
192
A
ARG
193
n
139
ARG
193
A
ASP
194
n
140
ASP
194
A
PHE
195
n
141
PHE
195
A
VAL
196
n
142
VAL
196
A
PHE
197
n
143
PHE
197
A
ARG
198
n
144
ARG
198
A
HIS
199
n
145
HIS
199
A
LYS
200
n
146
LYS
200
A
ASP
201
n
147
ASP
201
A
SER
202
n
148
SER
202
A
n
149
203
A
n
150
204
A
n
151
205
A
n
152
206
A
PRO
207
n
153
PRO
207
A
SER
208
n
154
SER
208
A
ARG
209
n
155
ARG
209
A
ARG
210
n
156
ARG
210
A
VAL
211
n
157
VAL
211
A
ALA
212
n
158
ALA
212
A
VAL
213
n
159
VAL
213
A
VAL
214
n
160
VAL
214
A
ARG
215
n
161
ARG
215
A
LEU
216
n
162
LEU
216
A
PRO
217
n
163
PRO
217
A
LEU
218
n
164
LEU
218
A
ALA
219
n
165
ALA
219
A
HIS
220
n
166
HIS
220
A
GLY
221
n
167
GLY
221
A
SER
222
n
168
SER
222
A
LEU
223
n
169
LEU
223
A
LEU
224
n
170
LEU
224
A
MET
225
n
171
MET
225
A
MET
226
n
172
MET
226
A
ASN
227
n
173
ASN
227
A
HIS
228
n
174
HIS
228
A
PRO
229
n
175
PRO
229
A
THR
230
n
176
THR
230
A
ASN
231
n
177
ASN
231
A
THR
232
n
178
THR
232
A
HIS
233
n
179
HIS
233
A
TRP
234
n
180
TRP
234
A
TYR
235
n
181
TYR
235
A
HIS
236
n
182
HIS
236
A
SER
237
n
183
SER
237
A
LEU
238
n
184
LEU
238
A
PRO
239
n
185
PRO
239
A
VAL
240
n
186
VAL
240
A
ARG
241
n
187
ARG
241
A
LYS
242
n
188
LYS
242
A
LYS
243
n
189
LYS
243
A
VAL
244
n
190
VAL
244
A
LEU
245
n
191
LEU
245
A
ALA
246
n
192
ALA
246
A
PRO
247
n
193
PRO
247
A
ARG
248
n
194
ARG
248
A
VAL
249
n
195
VAL
249
A
ASN
250
n
196
ASN
250
A
LEU
251
n
197
LEU
251
A
THR
252
n
198
THR
252
A
PHE
253
n
199
PHE
253
A
ARG
254
n
200
ARG
254
A
LYS
255
n
201
LYS
255
A
ILE
256
n
202
ILE
256
A
LEU
257
n
203
LEU
257
A
LEU
258
n
204
LEU
258
A
GLY
259
n
205
GLY
259
A
DT
10
n
1
DT
10
B
DC
11
n
2
DC
11
B
DG
12
n
3
DG
12
B
DA
13
n
4
DA
13
B
DC
14
n
5
DC
14
B
DA
15
n
6
DA
15
B
DG
16
n
7
DG
16
B
DT
17
n
8
DT
17
B
DG
18
n
9
DG
18
B
DA
19
n
10
DA
19
B
DG
20
n
11
DG
20
B
DA
21
n
12
DA
21
B
DC
22
n
13
DC
22
B
DA
23
n
14
DA
23
B
DT
28
n
1
DT
28
C
DG
29
n
2
DG
29
C
DT
30
n
3
DT
30
C
DC
31
n
4
DC
31
C
DT
32
n
5
DT
32
C
DC
33
n
6
DC
33
C
DA
34
n
7
DA
34
C
2YR
35
n
8
2YR
35
C
DT
36
n
9
DT
36
C
DG
37
n
10
DG
37
C
DT
38
n
11
DT
38
C
DC
39
n
12
DC
39
C
DG
40
n
13
DG
40
C
2.2961
0.3991
-0.4412
2.0276
0.0611
0.8263
0.0754
-0.0527
0.1947
0.0060
0.1311
-0.0687
-0.0854
0.0888
-0.2065
0.0893
-0.0461
0.0924
0.1134
-0.0157
0.1436
refined
38.5321
-35.7958
-3.9841
X-RAY DIFFRACTION
4.0321
-2.0794
2.9621
4.0644
-3.6353
10.5692
-0.0510
-0.2312
0.2087
0.2772
0.2095
-0.2432
-0.4956
-0.1955
-0.1585
0.1365
-0.1077
0.0864
0.1490
-0.1156
0.1155
refined
48.5332
-18.5380
6.0190
X-RAY DIFFRACTION
5.2287
-0.5377
0.8077
4.0922
-2.4960
6.3168
0.0461
0.0436
-0.0745
0.2201
0.0913
0.0400
-0.9046
0.3679
-0.1374
0.3126
-0.1964
0.1069
0.2411
-0.1934
0.1853
refined
50.5074
-18.0512
6.0938
X-RAY DIFFRACTION
A
55
A
259
X-RAY DIFFRACTION
1
B
10
B
23
X-RAY DIFFRACTION
2
C
28
C
40
X-RAY DIFFRACTION
3
author_and_software_defined_assembly
PISA
3
trimeric
3030
-25
14140
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
60
A
N
ILE
6
A
O
SER
67
A
O
SER
13
A
N
THR
70
A
N
THR
16
A
O
LEU
223
A
O
LEU
169
A
O
LEU
224
A
O
LEU
170
A
N
SER
186
A
N
SER
132
A
N
PHE
189
A
N
PHE
135
A
O
VAL
249
A
O
VAL
195
A
O
ARG
248
A
O
ARG
194
A
N
TYR
161
A
N
TYR
107
A
O
ILE
158
A
O
ILE
104
A
N
ALA
113
A
N
ALA
59
A
N
GLY
116
A
N
GLY
62
A
O
LYS
132
A
O
LYS
78
A
N
VAL
101
A
N
VAL
47
A
O
LYS
104
A
O
LYS
50
A
N
PHE
124
A
N
PHE
70
A
O
LEU
127
A
O
LEU
73
A
N
HIS
171
A
N
HIS
117
A
O
HIS
236
A
O
HIS
182
A
O
TYR
235
A
O
TYR
181
A
N
ARG
198
A
N
ARG
144
A
N
ARG
193
A
N
ARG
139
A
O
LEU
218
A
O
LEU
164
1
A
PRO
180
A
PRO
126
1
Y
1
A
GLY
181
A
GLY
127
1
Y
1
A
ARG
203
A
ARG
149
1
Y
1
A
GLY
204
A
GLY
150
1
Y
1
A
LYS
205
A
LYS
151
1
Y
1
A
SER
206
A
SER
152
1
Y
1
A
GLU
63
-58.53
102.07
1
A
ASP
173
-45.06
157.40
1
A
HIS
228
-35.14
137.32
1
A
PRO
229
-105.67
44.09
118.400
70.637
20.000
0.4100
0.4100
-0.0000
0.4100
-0.0000
-1.3500
0.9340
0.9060
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY
0.2759
0.2306
0.2330
2.6000
30.0000
649
13849
13200
4.9000
99.3800
1.000
0.400
21.8690
0.2170
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.4480
0.3060
0.8000
0.8000
1.2000
PDB ENTRY 3S5A
MAXIMUM LIKELIHOOD
MASK
2.6000
30.0000
0
2151
1
550
1600
0.010
0.017
2271
0.001
0.020
1886
1.398
1.710
3180
0.954
3.000
4345
6.590
5.000
200
31.566
21.923
78
18.169
15.000
274
14.535
15.000
16
0.082
0.200
324
0.007
0.020
2167
0.001
0.020
550
0.4870
0.3980
2.6670
44
858
902
20
95.0500
2.60
50.00
4MGT
13880
13760
1.5
1.8
1
99.2
2.60
2.69
1
95.1
2.69
2.80
1
99.3
2.80
2.93
1
99.7
2.93
3.08
1
99.9
3.08
3.28
1
99.8
3.28
3.53
1
99.9
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
package
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
package
phasing
Alexei Vaguine
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
5.7.0029
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
ALKBH2 R110A cross-linked to undamaged dsDNA
1
N
N
2
N
N
3
N
N
4
N
N
A
GLY
74
A
GLY
20
HELX_P
A
VAL
89
A
VAL
35
1
1
16
A
ILE
81
A
ILE
27
HELX_P
A
GLY
150
A
GLY
96
1
2
70
A
ASP
174
A
ASP
120
HELX_P
A
LEU
178
A
LEU
124
5
3
5
A
PRO
229
A
PRO
175
HELX_P
A
HIS
233
A
HIS
179
1
4
5
covale
2.101
one
A
CYS
169
A
SG
CYS
115
1_555
C
2YR
35
C
S
2YR
8
1_555
covale
1.603
both
C
DA
34
C
O3'
DA
7
1_555
C
2YR
35
C
P
2YR
8
1_555
covale
1.596
both
C
2YR
35
C
O3'
2YR
8
1_555
C
DT
36
C
P
DT
9
1_555
metalc
2.360
A
ASP
173
A
OD1
ASP
119
1_555
A
MG
301
D
MG
MG
1_555
hydrog
WATSON-CRICK
B
DC
11
B
N3
DC
2
1_555
C
DG
40
C
N1
DG
13
1_555
hydrog
WATSON-CRICK
B
DC
11
B
N4
DC
2
1_555
C
DG
40
C
O6
DG
13
1_555
hydrog
WATSON-CRICK
B
DC
11
B
O2
DC
2
1_555
C
DG
40
C
N2
DG
13
1_555
hydrog
WATSON-CRICK
B
DG
12
B
N1
DG
3
1_555
C
DC
39
C
N3
DC
12
1_555
hydrog
WATSON-CRICK
B
DG
12
B
N2
DG
3
1_555
C
DC
39
C
O2
DC
12
1_555
hydrog
WATSON-CRICK
B
DG
12
B
O6
DG
3
1_555
C
DC
39
C
N4
DC
12
1_555
hydrog
WATSON-CRICK
B
DA
13
B
N1
DA
4
1_555
C
DT
38
C
N3
DT
11
1_555
hydrog
WATSON-CRICK
B
DA
13
B
N6
DA
4
1_555
C
DT
38
C
O4
DT
11
1_555
hydrog
WATSON-CRICK
B
DC
14
B
N3
DC
5
1_555
C
DG
37
C
N1
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
14
B
N4
DC
5
1_555
C
DG
37
C
O6
DG
10
1_555
hydrog
WATSON-CRICK
B
DC
14
B
O2
DC
5
1_555
C
DG
37
C
N2
DG
10
1_555
hydrog
WATSON-CRICK
B
DA
15
B
N1
DA
6
1_555
C
DT
36
C
N3
DT
9
1_555
hydrog
WATSON-CRICK
B
DA
15
B
N6
DA
6
1_555
C
DT
36
C
O4
DT
9
1_555
hydrog
WATSON-CRICK
B
DT
17
B
N3
DT
8
1_555
C
DA
34
C
N1
DA
7
1_555
hydrog
WATSON-CRICK
B
DT
17
B
O4
DT
8
1_555
C
DA
34
C
N6
DA
7
1_555
hydrog
WATSON-CRICK
B
DG
18
B
N1
DG
9
1_555
C
DC
33
C
N3
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
18
B
N2
DG
9
1_555
C
DC
33
C
O2
DC
6
1_555
hydrog
WATSON-CRICK
B
DG
18
B
O6
DG
9
1_555
C
DC
33
C
N4
DC
6
1_555
hydrog
WATSON-CRICK
B
DA
19
B
N1
DA
10
1_555
C
DT
32
C
N3
DT
5
1_555
hydrog
WATSON-CRICK
B
DA
19
B
N6
DA
10
1_555
C
DT
32
C
O4
DT
5
1_555
hydrog
WATSON-CRICK
B
DG
20
B
N1
DG
11
1_555
C
DC
31
C
N3
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
20
B
N2
DG
11
1_555
C
DC
31
C
O2
DC
4
1_555
hydrog
WATSON-CRICK
B
DG
20
B
O6
DG
11
1_555
C
DC
31
C
N4
DC
4
1_555
hydrog
WATSON-CRICK
B
DA
21
B
N1
DA
12
1_555
C
DT
30
C
N3
DT
3
1_555
hydrog
WATSON-CRICK
B
DA
21
B
N6
DA
12
1_555
C
DT
30
C
O4
DT
3
1_555
hydrog
WATSON-CRICK
B
DC
22
B
N3
DC
13
1_555
C
DG
29
C
N1
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
22
B
N4
DC
13
1_555
C
DG
29
C
O6
DG
2
1_555
hydrog
WATSON-CRICK
B
DC
22
B
O2
DC
13
1_555
C
DG
29
C
N2
DG
2
1_555
hydrog
WATSON-CRICK
B
DA
23
B
N1
DA
14
1_555
C
DT
28
C
N3
DT
1
1_555
hydrog
WATSON-CRICK
B
DA
23
B
N6
DA
14
1_555
C
DT
28
C
O4
DT
1
1_555
OXIDOREDUCTASE/DNA
protein-DNA complex, OXIDOREDUCTASE-DNA complex
A
HIS
228
A
HIS
174
1
A
PRO
229
A
PRO
175
-3.22
ALKB2_HUMAN
UNP
1
56
Q6NS38
SWRHIRAEGLDCSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLSPKPWI
PVLERIRDHVSGVTGQTFNFVLINRYKDGCDHIGEHRDDERELAPGSPIASVSFGACRDFVFRHKDSRGKSPSRRVAVVR
LPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILL
4MGT
PDB
2
4MGT
4MGT
PDB
3
4MGT
56
258
4MGT
56
258
Q6NS38
A
1
2
204
10
23
4MGT
10
23
4MGT
B
2
1
14
28
40
4MGT
28
40
4MGT
C
3
1
13
1
initiating methionine
MET
55
4MGT
A
Q6NS38
UNP
1
1
CYS
conflict
SER
67
4MGT
A
Q6NS38
UNP
67
13
1
ARG
engineered mutation
ALA
110
4MGT
A
Q6NS38
UNP
110
56
1
CYS
conflict
SER
165
4MGT
A
Q6NS38
UNP
165
111
1
GLY
conflict
CYS
169
4MGT
A
Q6NS38
UNP
169
115
1
CYS
conflict
SER
192
4MGT
A
Q6NS38
UNP
192
138
1
expression tag
GLY
259
4MGT
A
Q6NS38
UNP
205
8
2
2
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
58
A
ARG
4
A
ALA
62
A
ALA
8
A
LEU
65
A
LEU
11
A
VAL
71
A
VAL
17
A
SER
222
A
SER
168
A
ASN
227
A
ASN
173
A
ILE
184
A
ILE
130
A
GLY
190
A
GLY
136
A
ARG
248
A
ARG
194
A
ARG
254
A
ARG
200
A
PHE
155
A
PHE
101
A
TYR
161
A
TYR
107
A
GLN
112
A
GLN
58
A
GLY
116
A
GLY
62
A
LYS
132
A
LYS
78
A
PRO
133
A
PRO
79
A
ARG
98
A
ARG
44
A
VAL
101
A
VAL
47
A
LYS
104
A
LYS
50
A
SER
107
A
SER
53
A
TYR
122
A
TYR
68
A
PHE
124
A
PHE
70
A
LEU
127
A
LEU
73
A
LEU
129
A
LEU
75
A
ILE
168
A
ILE
114
A
HIS
171
A
HIS
117
A
TRP
234
A
TRP
180
A
LEU
238
A
LEU
184
A
ARG
193
A
ARG
139
A
HIS
199
A
HIS
145
A
VAL
213
A
VAL
159
A
LEU
218
A
LEU
164
BINDING SITE FOR RESIDUE MG A 301
A
MG
301
Software
3
A
HIS
171
A
HIS
117
3
1_555
A
ASP
173
A
ASP
119
3
1_555
A
HIS
236
A
HIS
182
3
1_555
182
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