0.015451 0.000000 0.000623 0.000000 0.013906 0.000000 0.000000 0.000000 0.015279 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 92.310 90.000 64.719 71.913 65.504 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C9 H19 N O3 S 221.317 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID non-polymer C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of a hypothetical protein (BVU_2238) from Bacteroides vulgatus ATCC 8482 at 1.99 A resolution 10.2210/pdb4mjf/pdb pdb_00004mjf 100 1 Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing) PIXEL 2013-07-02 DECTRIS PILATUS 6M single crystal Si(111) bent SAD M x-ray 1 0.97879 1.0 BL11-1 SSRL 0.97879 SYNCHROTRON SSRL BEAMLINE BL11-1 31392.744 hypothetical protein 1 man polymer 221.317 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID 2 syn non-polymer 96.063 SULFATE ION 4 syn non-polymer 62.068 1,2-ETHANEDIOL 5 syn non-polymer 35.453 CHLORIDE ION 4 syn non-polymer 18.015 water 123 nat water no yes GDPFETLTEEIDSLTAPPDTTEA(MSE)AAVEEEP(MSE)VPATADESFADFFYNFASDEKLQLSRIVFPLPYYT(MSE) EKKEHIEKDQWKHDPLFSRQDAYTVLFDKAED(MSE)E(MSE)EKDTGLTSVKIEWIYLKKGKIKRYYFERLKGLWKLEA IDFAD(MSE)PREDTGKEDFFEFYERFANDSVFQLSRLHEPLKFVTADPEDEFQILETTLEAGQWFAFQPVLPRENLTNV NYGQNENVHSNTKVIE(MSE)KGFGNGFNNTLYFERRHGLWKL(MSE)QFEDLSD GDPFETLTEEIDSLTAPPDTTEAMAAVEEEPMVPATADESFADFFYNFASDEKLQLSRIVFPLPYYTMEKKEHIEKDQWK HDPLFSRQDAYTVLFDKAEDMEMEKDTGLTSVKIEWIYLKKGKIKRYYFERLKGLWKLEAIDFADMPREDTGKEDFFEFY ERFANDSVFQLSRLHEPLKFVTADPEDEFQILETTLEAGQWFAFQPVLPRENLTNVNYGQNENVHSNTKVIEMKGFGNGF NNTLYFERRHGLWKLMQFEDLSD A JCSG-385698 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 8482 sample BVU_2238, YP_001299520.1 435590 Bacteroides vulgatus 562 Escherichia Coli PB1 Plasmid SpeedET 1 2.43 49.30 VAPOR DIFFUSION, SITTING DROP 10.5 0.200M lithium sulfate, 2.00M ammonium sulfate, 0.200M sodium thiocyanate, 0.1M CAPS pH 10.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI:Biology software citation_author database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Structure summary Refinement description Database references Database references Derived calculations 1 0 2013-11-13 1 1 2014-12-24 1 2 2017-11-15 1 3 2018-01-24 1 4 2023-02-01 _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2013-09-03 REL REL CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID SO4 SULFATE ION EDO 1,2-ETHANEDIOL CL CHLORIDE ION HOH water THIS CONSTRUCT (25-286) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. CXS 300 2 CXS CXS 300 A CXS 301 2 CXS CXS 301 A SO4 302 3 SO4 SO4 302 A SO4 303 3 SO4 SO4 303 A SO4 304 3 SO4 SO4 304 A SO4 305 3 SO4 SO4 305 A EDO 306 4 EDO EDO 306 A EDO 307 4 EDO EDO 307 A EDO 308 4 EDO EDO 308 A EDO 309 4 EDO EDO 309 A EDO 310 4 EDO EDO 310 A CL 311 5 CL CL 311 A CL 312 5 CL CL 312 A CL 313 5 CL CL 313 A CL 314 5 CL CL 314 A HOH 315 6 HOH HOH 401 A HOH 316 6 HOH HOH 402 A HOH 317 6 HOH HOH 403 A HOH 318 6 HOH HOH 404 A HOH 319 6 HOH HOH 405 A HOH 320 6 HOH HOH 406 A HOH 321 6 HOH HOH 407 A HOH 322 6 HOH HOH 408 A HOH 323 6 HOH HOH 409 A HOH 324 6 HOH HOH 410 A HOH 325 6 HOH HOH 411 A HOH 326 6 HOH HOH 412 A HOH 327 6 HOH HOH 413 A HOH 328 6 HOH HOH 414 A HOH 329 6 HOH HOH 415 A HOH 330 6 HOH HOH 416 A HOH 331 6 HOH HOH 417 A HOH 332 6 HOH HOH 418 A HOH 333 6 HOH HOH 419 A HOH 334 6 HOH HOH 420 A HOH 335 6 HOH HOH 421 A HOH 336 6 HOH HOH 422 A HOH 337 6 HOH HOH 423 A HOH 338 6 HOH HOH 424 A HOH 339 6 HOH HOH 425 A HOH 340 6 HOH HOH 426 A HOH 341 6 HOH HOH 427 A HOH 342 6 HOH HOH 428 A HOH 343 6 HOH HOH 429 A HOH 344 6 HOH HOH 430 A HOH 345 6 HOH HOH 431 A HOH 346 6 HOH HOH 432 A HOH 347 6 HOH HOH 433 A HOH 348 6 HOH HOH 434 A HOH 349 6 HOH HOH 435 A HOH 350 6 HOH HOH 436 A HOH 351 6 HOH HOH 437 A HOH 352 6 HOH HOH 438 A HOH 353 6 HOH HOH 439 A HOH 354 6 HOH HOH 440 A HOH 355 6 HOH HOH 441 A HOH 356 6 HOH HOH 442 A HOH 357 6 HOH HOH 443 A HOH 358 6 HOH HOH 444 A HOH 359 6 HOH HOH 445 A HOH 360 6 HOH HOH 446 A HOH 361 6 HOH HOH 447 A HOH 362 6 HOH HOH 448 A HOH 363 6 HOH HOH 449 A HOH 364 6 HOH HOH 450 A HOH 365 6 HOH HOH 451 A HOH 366 6 HOH HOH 452 A HOH 367 6 HOH HOH 453 A HOH 368 6 HOH HOH 454 A HOH 369 6 HOH HOH 455 A HOH 370 6 HOH HOH 456 A HOH 371 6 HOH HOH 457 A HOH 372 6 HOH HOH 458 A HOH 373 6 HOH HOH 459 A HOH 374 6 HOH HOH 460 A HOH 375 6 HOH HOH 461 A HOH 376 6 HOH HOH 462 A HOH 377 6 HOH HOH 463 A HOH 378 6 HOH HOH 464 A HOH 379 6 HOH HOH 465 A HOH 380 6 HOH HOH 466 A HOH 381 6 HOH HOH 467 A HOH 382 6 HOH HOH 468 A HOH 383 6 HOH HOH 469 A HOH 384 6 HOH HOH 470 A HOH 385 6 HOH HOH 471 A HOH 386 6 HOH HOH 472 A HOH 387 6 HOH HOH 473 A HOH 388 6 HOH HOH 474 A HOH 389 6 HOH HOH 475 A HOH 390 6 HOH HOH 476 A HOH 391 6 HOH HOH 477 A HOH 392 6 HOH HOH 478 A HOH 393 6 HOH HOH 479 A HOH 394 6 HOH HOH 480 A HOH 395 6 HOH HOH 481 A HOH 396 6 HOH HOH 482 A HOH 397 6 HOH HOH 483 A HOH 398 6 HOH HOH 484 A HOH 399 6 HOH HOH 485 A HOH 400 6 HOH HOH 486 A HOH 401 6 HOH HOH 487 A HOH 402 6 HOH HOH 488 A HOH 403 6 HOH HOH 489 A HOH 404 6 HOH HOH 490 A HOH 405 6 HOH HOH 491 A HOH 406 6 HOH HOH 492 A HOH 407 6 HOH HOH 493 A HOH 408 6 HOH HOH 494 A HOH 409 6 HOH HOH 495 A HOH 410 6 HOH HOH 496 A HOH 411 6 HOH HOH 497 A HOH 412 6 HOH HOH 498 A HOH 413 6 HOH HOH 499 A HOH 414 6 HOH HOH 500 A HOH 415 6 HOH HOH 501 A HOH 416 6 HOH HOH 502 A HOH 417 6 HOH HOH 503 A HOH 418 6 HOH HOH 504 A HOH 419 6 HOH HOH 505 A HOH 420 6 HOH HOH 506 A HOH 421 6 HOH HOH 507 A HOH 422 6 HOH HOH 508 A HOH 423 6 HOH HOH 509 A HOH 424 6 HOH HOH 510 A HOH 425 6 HOH HOH 511 A HOH 426 6 HOH HOH 512 A HOH 427 6 HOH HOH 513 A HOH 428 6 HOH HOH 514 A HOH 429 6 HOH HOH 515 A HOH 430 6 HOH HOH 516 A HOH 431 6 HOH HOH 517 A HOH 432 6 HOH HOH 518 A HOH 433 6 HOH HOH 519 A HOH 434 6 HOH HOH 520 A HOH 435 6 HOH HOH 521 A HOH 436 6 HOH HOH 522 A HOH 437 6 HOH HOH 523 A n 1 0 A n 2 25 A n 3 26 A n 4 27 A n 5 28 A n 6 29 A n 7 30 A n 8 31 A n 9 32 A n 10 33 A n 11 34 A n 12 35 A n 13 36 A n 14 37 A n 15 38 A n 16 39 A n 17 40 A n 18 41 A n 19 42 A n 20 43 A n 21 44 A n 22 45 A n 23 46 A n 24 47 A n 25 48 A n 26 49 A n 27 50 A n 28 51 A n 29 52 A n 30 53 A n 31 54 A n 32 55 A n 33 56 A n 34 57 A n 35 58 A n 36 59 A ALA 60 n 37 ALA 60 A ASP 61 n 38 ASP 61 A GLU 62 n 39 GLU 62 A SER 63 n 40 SER 63 A PHE 64 n 41 PHE 64 A ALA 65 n 42 ALA 65 A ASP 66 n 43 ASP 66 A PHE 67 n 44 PHE 67 A PHE 68 n 45 PHE 68 A TYR 69 n 46 TYR 69 A ASN 70 n 47 ASN 70 A PHE 71 n 48 PHE 71 A ALA 72 n 49 ALA 72 A SER 73 n 50 SER 73 A ASP 74 n 51 ASP 74 A GLU 75 n 52 GLU 75 A LYS 76 n 53 LYS 76 A LEU 77 n 54 LEU 77 A GLN 78 n 55 GLN 78 A LEU 79 n 56 LEU 79 A SER 80 n 57 SER 80 A ARG 81 n 58 ARG 81 A ILE 82 n 59 ILE 82 A VAL 83 n 60 VAL 83 A PHE 84 n 61 PHE 84 A PRO 85 n 62 PRO 85 A LEU 86 n 63 LEU 86 A PRO 87 n 64 PRO 87 A TYR 88 n 65 TYR 88 A TYR 89 n 66 TYR 89 A THR 90 n 67 THR 90 A MSE 91 n 68 MSE 91 A GLU 92 n 69 GLU 92 A LYS 93 n 70 LYS 93 A LYS 94 n 71 LYS 94 A GLU 95 n 72 GLU 95 A HIS 96 n 73 HIS 96 A ILE 97 n 74 ILE 97 A GLU 98 n 75 GLU 98 A LYS 99 n 76 LYS 99 A ASP 100 n 77 ASP 100 A GLN 101 n 78 GLN 101 A TRP 102 n 79 TRP 102 A LYS 103 n 80 LYS 103 A HIS 104 n 81 HIS 104 A ASP 105 n 82 ASP 105 A PRO 106 n 83 PRO 106 A LEU 107 n 84 LEU 107 A PHE 108 n 85 PHE 108 A SER 109 n 86 SER 109 A ARG 110 n 87 ARG 110 A GLN 111 n 88 GLN 111 A ASP 112 n 89 ASP 112 A ALA 113 n 90 ALA 113 A TYR 114 n 91 TYR 114 A THR 115 n 92 THR 115 A VAL 116 n 93 VAL 116 A LEU 117 n 94 LEU 117 A PHE 118 n 95 PHE 118 A ASP 119 n 96 ASP 119 A LYS 120 n 97 LYS 120 A ALA 121 n 98 ALA 121 A GLU 122 n 99 GLU 122 A ASP 123 n 100 ASP 123 A MSE 124 n 101 MSE 124 A GLU 125 n 102 GLU 125 A MSE 126 n 103 MSE 126 A n 104 127 A n 105 128 A ASP 129 n 106 ASP 129 A THR 130 n 107 THR 130 A GLY 131 n 108 GLY 131 A LEU 132 n 109 LEU 132 A THR 133 n 110 THR 133 A SER 134 n 111 SER 134 A VAL 135 n 112 VAL 135 A LYS 136 n 113 LYS 136 A ILE 137 n 114 ILE 137 A GLU 138 n 115 GLU 138 A TRP 139 n 116 TRP 139 A ILE 140 n 117 ILE 140 A TYR 141 n 118 TYR 141 A LEU 142 n 119 LEU 142 A LYS 143 n 120 LYS 143 A LYS 144 n 121 LYS 144 A GLY 145 n 122 GLY 145 A LYS 146 n 123 LYS 146 A ILE 147 n 124 ILE 147 A LYS 148 n 125 LYS 148 A ARG 149 n 126 ARG 149 A TYR 150 n 127 TYR 150 A TYR 151 n 128 TYR 151 A PHE 152 n 129 PHE 152 A GLU 153 n 130 GLU 153 A ARG 154 n 131 ARG 154 A LEU 155 n 132 LEU 155 A LYS 156 n 133 LYS 156 A GLY 157 n 134 GLY 157 A LEU 158 n 135 LEU 158 A TRP 159 n 136 TRP 159 A LYS 160 n 137 LYS 160 A LEU 161 n 138 LEU 161 A GLU 162 n 139 GLU 162 A ALA 163 n 140 ALA 163 A ILE 164 n 141 ILE 164 A ASP 165 n 142 ASP 165 A PHE 166 n 143 PHE 166 A ALA 167 n 144 ALA 167 A ASP 168 n 145 ASP 168 A MSE 169 n 146 MSE 169 A PRO 170 n 147 PRO 170 A ARG 171 n 148 ARG 171 A GLU 172 n 149 GLU 172 A ASP 173 n 150 ASP 173 A THR 174 n 151 THR 174 A GLY 175 n 152 GLY 175 A LYS 176 n 153 LYS 176 A GLU 177 n 154 GLU 177 A ASP 178 n 155 ASP 178 A PHE 179 n 156 PHE 179 A PHE 180 n 157 PHE 180 A GLU 181 n 158 GLU 181 A PHE 182 n 159 PHE 182 A TYR 183 n 160 TYR 183 A GLU 184 n 161 GLU 184 A ARG 185 n 162 ARG 185 A PHE 186 n 163 PHE 186 A ALA 187 n 164 ALA 187 A ASN 188 n 165 ASN 188 A ASP 189 n 166 ASP 189 A SER 190 n 167 SER 190 A VAL 191 n 168 VAL 191 A PHE 192 n 169 PHE 192 A GLN 193 n 170 GLN 193 A LEU 194 n 171 LEU 194 A SER 195 n 172 SER 195 A ARG 196 n 173 ARG 196 A LEU 197 n 174 LEU 197 A HIS 198 n 175 HIS 198 A GLU 199 n 176 GLU 199 A PRO 200 n 177 PRO 200 A LEU 201 n 178 LEU 201 A LYS 202 n 179 LYS 202 A PHE 203 n 180 PHE 203 A VAL 204 n 181 VAL 204 A THR 205 n 182 THR 205 A ALA 206 n 183 ALA 206 A ASP 207 n 184 ASP 207 A PRO 208 n 185 PRO 208 A GLU 209 n 186 GLU 209 A ASP 210 n 187 ASP 210 A GLU 211 n 188 GLU 211 A PHE 212 n 189 PHE 212 A GLN 213 n 190 GLN 213 A ILE 214 n 191 ILE 214 A LEU 215 n 192 LEU 215 A GLU 216 n 193 GLU 216 A THR 217 n 194 THR 217 A THR 218 n 195 THR 218 A LEU 219 n 196 LEU 219 A GLU 220 n 197 GLU 220 A ALA 221 n 198 ALA 221 A GLY 222 n 199 GLY 222 A GLN 223 n 200 GLN 223 A TRP 224 n 201 TRP 224 A PHE 225 n 202 PHE 225 A ALA 226 n 203 ALA 226 A PHE 227 n 204 PHE 227 A GLN 228 n 205 GLN 228 A PRO 229 n 206 PRO 229 A VAL 230 n 207 VAL 230 A LEU 231 n 208 LEU 231 A PRO 232 n 209 PRO 232 A ARG 233 n 210 ARG 233 A GLU 234 n 211 GLU 234 A ASN 235 n 212 ASN 235 A LEU 236 n 213 LEU 236 A THR 237 n 214 THR 237 A ASN 238 n 215 ASN 238 A VAL 239 n 216 VAL 239 A ASN 240 n 217 ASN 240 A TYR 241 n 218 TYR 241 A GLY 242 n 219 GLY 242 A GLN 243 n 220 GLN 243 A ASN 244 n 221 ASN 244 A GLU 245 n 222 GLU 245 A ASN 246 n 223 ASN 246 A VAL 247 n 224 VAL 247 A HIS 248 n 225 HIS 248 A SER 249 n 226 SER 249 A ASN 250 n 227 ASN 250 A THR 251 n 228 THR 251 A LYS 252 n 229 LYS 252 A VAL 253 n 230 VAL 253 A ILE 254 n 231 ILE 254 A GLU 255 n 232 GLU 255 A MSE 256 n 233 MSE 256 A LYS 257 n 234 LYS 257 A GLY 258 n 235 GLY 258 A PHE 259 n 236 PHE 259 A GLY 260 n 237 GLY 260 A ASN 261 n 238 ASN 261 A GLY 262 n 239 GLY 262 A PHE 263 n 240 PHE 263 A ASN 264 n 241 ASN 264 A ASN 265 n 242 ASN 265 A THR 266 n 243 THR 266 A LEU 267 n 244 LEU 267 A TYR 268 n 245 TYR 268 A PHE 269 n 246 PHE 269 A GLU 270 n 247 GLU 270 A ARG 271 n 248 ARG 271 A ARG 272 n 249 ARG 272 A HIS 273 n 250 HIS 273 A GLY 274 n 251 GLY 274 A LEU 275 n 252 LEU 275 A TRP 276 n 253 TRP 276 A LYS 277 n 254 LYS 277 A LEU 278 n 255 LEU 278 A MSE 279 n 256 MSE 279 A GLN 280 n 257 GLN 280 A PHE 281 n 258 PHE 281 A GLU 282 n 259 GLU 282 A ASP 283 n 260 ASP 283 A LEU 284 n 261 LEU 284 A SER 285 n 262 SER 285 A ASP 286 n 263 ASP 286 A 0.6450 -0.0621 -0.4588 2.0787 1.7487 2.1713 -0.1326 -0.0515 -0.0237 0.0240 0.0990 0.0620 0.1407 0.1667 0.0336 -0.0698 0.1045 -0.0019 -0.0239 0.0753 -0.0879 refined 28.0141 64.2834 17.8915 X-RAY DIFFRACTION A 60 A 286 X-RAY DIFFRACTION 1 { A|60 - 286 } author_and_software_defined_assembly PISA 2 dimeric 6540 -178 24070 A MSE 91 SELENOMETHIONINE A MSE 68 MET A MSE 124 SELENOMETHIONINE A MSE 101 MET A MSE 126 SELENOMETHIONINE A MSE 103 MET A MSE 169 SELENOMETHIONINE A MSE 146 MET A MSE 256 SELENOMETHIONINE A MSE 233 MET A MSE 279 SELENOMETHIONINE A MSE 256 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_655 -x+1,y,-z crystal symmetry operation 64.7190000000 0.0000000000 0.0000000000 A O GLU 95 A O GLU 72 A N TYR 88 A N TYR 65 A N TYR 89 A N TYR 66 A O ILE 164 A O ILE 141 A O LEU 158 A O LEU 135 A N LEU 155 A N LEU 132 A O LYS 146 A O LYS 123 A N TYR 141 A N TYR 118 A N ILE 140 A N ILE 117 A O LEU 236 A O LEU 213 A N TYR 114 A N TYR 91 A O LYS 257 A O LYS 234 A N MSE 256 A N MSE 233 A O ASN 265 A O ASN 242 A N THR 266 A N THR 243 A O GLU 282 A O GLU 259 A O ASP 283 A O ASP 260 A N VAL 204 A N VAL 181 A N THR 205 A N THR 182 A O LEU 215 A O LEU 192 1 A CL 313 O CL 1 A CG LYS 120 A CG LYS 97 1 Y 1 A CD LYS 120 A CD LYS 97 1 Y 1 A CE LYS 120 A CE LYS 97 1 Y 1 A NZ LYS 120 A NZ LYS 97 1 Y 1 A CG GLU 125 A CG GLU 102 1 Y 1 A CD GLU 125 A CD GLU 102 1 Y 1 A OE1 GLU 125 A OE1 GLU 102 1 Y 1 A OE2 GLU 125 A OE2 GLU 102 1 Y 1 A CG ASP 173 A CG ASP 150 1 Y 1 A OD1 ASP 173 A OD1 ASP 150 1 Y 1 A OD2 ASP 173 A OD2 ASP 150 1 Y 1 A OG1 THR 174 A OG1 THR 151 1 Y 1 A CG2 THR 174 A CG2 THR 151 1 Y 1 A CG GLU 209 A CG GLU 186 1 Y 1 A CD GLU 209 A CD GLU 186 1 Y 1 A OE1 GLU 209 A OE1 GLU 186 1 Y 1 A OE2 GLU 209 A OE2 GLU 186 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A ASP 25 A ASP 2 1 Y 1 A PRO 26 A PRO 3 1 Y 1 A PHE 27 A PHE 4 1 Y 1 A GLU 28 A GLU 5 1 Y 1 A THR 29 A THR 6 1 Y 1 A LEU 30 A LEU 7 1 Y 1 A THR 31 A THR 8 1 Y 1 A GLU 32 A GLU 9 1 Y 1 A GLU 33 A GLU 10 1 Y 1 A ILE 34 A ILE 11 1 Y 1 A ASP 35 A ASP 12 1 Y 1 A SER 36 A SER 13 1 Y 1 A LEU 37 A LEU 14 1 Y 1 A THR 38 A THR 15 1 Y 1 A ALA 39 A ALA 16 1 Y 1 A PRO 40 A PRO 17 1 Y 1 A PRO 41 A PRO 18 1 Y 1 A ASP 42 A ASP 19 1 Y 1 A THR 43 A THR 20 1 Y 1 A THR 44 A THR 21 1 Y 1 A GLU 45 A GLU 22 1 Y 1 A ALA 46 A ALA 23 1 Y 1 A MSE 47 A MSE 24 1 Y 1 A ALA 48 A ALA 25 1 Y 1 A ALA 49 A ALA 26 1 Y 1 A VAL 50 A VAL 27 1 Y 1 A GLU 51 A GLU 28 1 Y 1 A GLU 52 A GLU 29 1 Y 1 A GLU 53 A GLU 30 1 Y 1 A PRO 54 A PRO 31 1 Y 1 A MSE 55 A MSE 32 1 Y 1 A VAL 56 A VAL 33 1 Y 1 A PRO 57 A PRO 34 1 Y 1 A ALA 58 A ALA 35 1 Y 1 A THR 59 A THR 36 1 Y 1 A GLU 127 A GLU 104 1 Y 1 A LYS 128 A LYS 105 1 Y 1 A LEU 107 52.55 -115.80 1 A THR 130 62.82 -14.35 1 A ASP 173 -93.27 -158.06 1 A GLU 209 -116.22 -120.14 1 A PHE 212 58.10 11.41 145.030 55.0599 31.850 0.1259 0.0000 1.3610 1.0088 0.0000 -1.1348 0.9586 0.9526 1.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3.ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4.SULFATE (SO4), CAPS (CXS), CHLORIDE (CL) AND 1,2-ETHANEDIOL (EDO) FROM THE CRYSTALLIZATION AND CRYOPROTECTANT SOLUTION HAVE BEEN MODELED. 5.RESIDUES 173-174 ARE IN A REGION OF ELECTRON DENSITY THAT IS NOT WELL-DEFINED. 0.2196 0.1911 0.1926 1.9900 48.085 1034 20230 5.1100 97.8100 1.000 0.300 RANDOM 1 THROUGHOUT 0.000 SAD 0.317 1.9900 48.085 123 2087 72 0 1892 944 SINUSOIDAL 2.000 61 HARMONIC 2.000 286 HARMONIC 5.000 2039 HARMONIC 20.000 239 SEMIHARMONIC 5.000 2310 SEMIHARMONIC 4.000 0.010 2039 HARMONIC 2.000 1.010 2751 HARMONIC 2.000 3.610 2.870 0.2152 0.2089 0.2092 2.1000 160 2834 2994 10 5.3400 97.8100 44.225 0.999 1.99 48.085 4MJF 20233 -3.000 0.037 0.044 1 15.210 67280 97.600 0.728 0.562 1.990 2.060 2.1 6720 2020 1999 0.669 1 99.000 0.851 0.408 2.060 2.140 3.0 6789 1998 1976 0.484 1 98.900 0.924 0.273 2.140 2.240 4.3 6989 2117 2082 0.326 1 98.300 0.961 0.180 2.240 2.360 6.3 6599 2112 2054 0.217 1 97.300 0.986 0.113 2.360 2.510 9.8 7183 2097 2071 0.134 1 98.800 0.993 0.076 2.510 2.700 13.5 6617 2009 1958 0.090 1 97.500 0.997 0.049 2.700 2.970 19.1 6486 2052 1977 0.059 1 96.300 0.999 0.033 2.970 3.400 26.5 6853 2072 2025 0.039 1 97.700 0.999 0.025 3.400 4.270 33.0 6529 2064 1992 0.029 1 96.500 0.998 0.030 4.270 34.7 6515 2146 2059 0.036 1 95.900 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 data extraction PDB deposit@deposit.rcsb.org June 10, 2010 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.10 phasing George M. Sheldrick gsheldr@shelx.uni-ac.gwdg.de Fortran_77 http://shelx.uni-ac.gwdg.de/SHELX/ SHELX package phasing Eric de La Fortelle sharp-develop@globalphasing.com http://www.globalphasing.com/sharp/ SHARP package data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package refinement Gerard Bricogne buster-develop@GlobalPhasing.com http://www.globalphasing.com/buster/ BUSTER-TNT program 2.10.0 data reduction XDS phasing SHELXD refinement BUSTER 2.10.0 Crystal structure of a DUF4348 family protein (BVU_2238) from Bacteroides vulgatus ATCC 8482 at 1.99 A resolution 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N 5 N N 5 N N 5 N N 6 N N A SER 63 A SER 40 HELX_P A ASP 74 A ASP 51 1 1 12 A ASP 74 A ASP 51 HELX_P A ARG 81 A ARG 58 1 2 8 A GLU 98 A GLU 75 HELX_P A TRP 102 A TRP 79 5 3 5 A LYS 120 A LYS 97 HELX_P A GLU 125 A GLU 102 5 4 6 A ASP 178 A ASP 155 HELX_P A ASP 189 A ASP 166 1 5 12 A ASP 189 A ASP 166 HELX_P A ARG 196 A ARG 173 1 6 8 A GLU 220 A GLU 197 HELX_P A GLN 228 A GLN 205 1 7 9 covale 1.339 both A THR 90 A C THR 67 1_555 A MSE 91 A N MSE 68 1_555 covale 1.345 both A MSE 91 A C MSE 68 1_555 A GLU 92 A N GLU 69 1_555 covale 1.356 both A ASP 123 A C ASP 100 1_555 A MSE 124 A N MSE 101 1_555 covale 1.348 both A MSE 124 A C MSE 101 1_555 A GLU 125 A N GLU 102 1_555 covale 1.354 both A GLU 125 A C GLU 102 1_555 A MSE 126 A N MSE 103 1_555 covale 1.338 both A ASP 168 A C ASP 145 1_555 A MSE 169 A N MSE 146 1_555 covale 1.358 both A MSE 169 A C MSE 146 1_555 A PRO 170 A N PRO 147 1_555 covale 1.338 both A GLU 255 A C GLU 232 1_555 A MSE 256 A N MSE 233 1_555 covale 1.353 both A MSE 256 A C MSE 233 1_555 A LYS 257 A N LYS 234 1_555 covale 1.343 both A LEU 278 A C LEU 255 1_555 A MSE 279 A N MSE 256 1_555 covale 1.341 both A MSE 279 A C MSE 256 1_555 A GLN 280 A N GLN 257 1_555 STRUCTURAL GENOMICS, UNKNOWN FUNCTION PF14254 family, DUF4348, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION A PHE 84 A PHE 61 1 A PRO 85 A PRO 62 0.17 A GLU 199 A GLU 176 1 A PRO 200 A PRO 177 3.71 A6L2I4_BACV8 UNP 1 25 A6L2I4 DPFETLTEEIDSLTAPPDTTEAMAAVEEEPMVPATADESFADFFYNFASDEKLQLSRIVFPLPYYTMEKKEHIEKDQWKH DPLFSRQDAYTVLFDKAEDMEMEKDTGLTSVKIEWIYLKKGKIKRYYFERLKGLWKLEAIDFADMPREDTGKEDFFEFYE RFANDSVFQLSRLHEPLKFVTADPEDEFQILETTLEAGQWFAFQPVLPRENLTNVNYGQNENVHSNTKVIEMKGFGNGFN NTLYFERRHGLWKLMQFEDLSD 25 286 4MJF 25 286 A6L2I4 A 1 2 263 1 expression tag GLY 0 4MJF A A6L2I4 UNP 1 6 6 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A LYS 93 A LYS 70 A ILE 97 A ILE 74 A LEU 86 A LEU 63 A THR 90 A THR 67 A LEU 158 A LEU 135 A ASP 168 A ASP 145 A LYS 146 A LYS 123 A LEU 155 A LEU 132 A SER 134 A SER 111 A TYR 141 A TYR 118 A ASN 235 A ASN 212 A ASN 240 A ASN 217 A ALA 113 A ALA 90 A PHE 118 A PHE 95 A THR 251 A THR 228 A GLY 258 A GLY 235 A ASN 264 A ASN 241 A ARG 272 A ARG 249 A LEU 275 A LEU 252 A ASP 283 A ASP 260 A LEU 197 A LEU 174 A ALA 206 A ALA 183 A ILE 214 A ILE 191 A LEU 219 A LEU 196 BINDING SITE FOR RESIDUE CXS A 300 A CXS 300 Software 7 BINDING SITE FOR RESIDUE CXS A 301 A CXS 301 Software 5 BINDING SITE FOR RESIDUE SO4 A 302 A SO4 302 Software 5 BINDING SITE FOR RESIDUE SO4 A 303 A SO4 303 Software 6 BINDING SITE FOR RESIDUE SO4 A 304 A SO4 304 Software 7 BINDING SITE FOR RESIDUE SO4 A 305 A SO4 305 Software 3 BINDING SITE FOR RESIDUE EDO A 306 A EDO 306 Software 8 BINDING SITE FOR RESIDUE EDO A 307 A EDO 307 Software 5 BINDING SITE FOR RESIDUE EDO A 308 A EDO 308 Software 3 BINDING SITE FOR RESIDUE EDO A 309 A EDO 309 Software 5 BINDING SITE FOR RESIDUE EDO A 310 A EDO 310 Software 1 BINDING SITE FOR RESIDUE CL A 311 A CL 311 Software 1 BINDING SITE FOR RESIDUE CL A 312 A CL 312 Software 1 BINDING SITE FOR RESIDUE CL A 313 A CL 313 Software 2 A PHE 108 A PHE 85 7 1_555 A TYR 114 A TYR 91 7 1_555 A PHE 259 A PHE 236 7 1_555 A GLY 260 A GLY 237 7 1_555 A EDO 310 L EDO 7 1_555 A HOH 444 Q HOH 7 1_555 A HOH 497 Q HOH 7 1_555 A TYR 89 A TYR 66 5 1_555 A ARG 149 A ARG 126 5 1_555 A GLU 153 A GLU 130 5 2_656 A ASP 165 A ASP 142 5 1_555 A ALA 167 A ALA 144 5 1_555 A ARG 272 A ARG 249 5 1_555 A HIS 273 A HIS 250 5 1_555 A HOH 401 Q HOH 5 1_555 A HOH 435 Q HOH 5 1_555 A HOH 492 Q HOH 5 3_545 A LEU 158 A LEU 135 6 3_545 A LYS 176 A LYS 153 6 1_555 A ASN 250 A ASN 227 6 1_555 A ARG 271 A ARG 248 6 1_555 A HOH 440 Q HOH 6 1_555 A HOH 481 Q HOH 6 1_555 A LYS 76 A LYS 53 7 3_545 A GLU 177 A GLU 154 7 1_555 A GLU 181 A GLU 158 7 1_555 A PHE 182 A PHE 159 7 1_555 A ARG 185 A ARG 162 7 1_555 A PHE 192 A PHE 169 7 1_555 A HOH 453 Q HOH 7 3_545 A ARG 233 A ARG 210 3 1_555 A GLU 234 A GLU 211 3 1_555 A ASN 235 A ASN 212 3 1_555 A LEU 117 A LEU 94 8 1_555 A PHE 118 A PHE 95 8 1_555 A ASP 119 A ASP 96 8 1_555 A ASN 238 A ASN 215 8 1_555 A GLN 243 A GLN 220 8 1_555 A ASN 244 A ASN 221 8 1_555 A GLU 245 A GLU 222 8 1_555 A LYS 252 A LYS 229 8 1_555 A PHE 68 A PHE 45 5 1_555 A TYR 69 A TYR 46 5 1_555 A SER 109 A SER 86 5 1_555 A PHE 259 A PHE 236 5 1_555 A HOH 444 Q HOH 5 1_555 A GLU 199 A GLU 176 3 1_555 A HOH 435 Q HOH 3 1_555 A HOH 449 Q HOH 3 1_555 A LYS 136 A LYS 113 5 1_555 A ASN 240 A ASN 217 5 1_555 A GLN 243 A GLN 220 5 1_555 A GLU 245 A GLU 222 5 1_555 A HOH 427 Q HOH 5 1_555 A CXS 300 B CXS 1 1_555 A HIS 198 A HIS 175 1 1_555 A HIS 273 A HIS 250 1 1_555 A GLY 222 A GLY 199 2 1_555 A GLY 222 A GLY 199 2 2_655 5 C 1 2 1