0.015451
0.000000
0.000623
0.000000
0.013906
0.000000
0.000000
0.000000
0.015279
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
92.310
90.000
64.719
71.913
65.504
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C9 H19 N O3 S
221.317
3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
non-polymer
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a hypothetical protein (BVU_2238) from Bacteroides vulgatus ATCC 8482 at 1.99 A resolution
10.2210/pdb4mjf/pdb
pdb_00004mjf
100
1
Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)
PIXEL
2013-07-02
DECTRIS PILATUS 6M
single crystal Si(111) bent
SAD
M
x-ray
1
0.97879
1.0
BL11-1
SSRL
0.97879
SYNCHROTRON
SSRL BEAMLINE BL11-1
31392.744
hypothetical protein
1
man
polymer
221.317
3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
2
syn
non-polymer
96.063
SULFATE ION
4
syn
non-polymer
62.068
1,2-ETHANEDIOL
5
syn
non-polymer
35.453
CHLORIDE ION
4
syn
non-polymer
18.015
water
123
nat
water
no
yes
GDPFETLTEEIDSLTAPPDTTEA(MSE)AAVEEEP(MSE)VPATADESFADFFYNFASDEKLQLSRIVFPLPYYT(MSE)
EKKEHIEKDQWKHDPLFSRQDAYTVLFDKAED(MSE)E(MSE)EKDTGLTSVKIEWIYLKKGKIKRYYFERLKGLWKLEA
IDFAD(MSE)PREDTGKEDFFEFYERFANDSVFQLSRLHEPLKFVTADPEDEFQILETTLEAGQWFAFQPVLPRENLTNV
NYGQNENVHSNTKVIE(MSE)KGFGNGFNNTLYFERRHGLWKL(MSE)QFEDLSD
GDPFETLTEEIDSLTAPPDTTEAMAAVEEEPMVPATADESFADFFYNFASDEKLQLSRIVFPLPYYTMEKKEHIEKDQWK
HDPLFSRQDAYTVLFDKAEDMEMEKDTGLTSVKIEWIYLKKGKIKRYYFERLKGLWKLEAIDFADMPREDTGKEDFFEFY
ERFANDSVFQLSRLHEPLKFVTADPEDEFQILETTLEAGQWFAFQPVLPRENLTNVNYGQNENVHSNTKVIEMKGFGNGF
NNTLYFERRHGLWKLMQFEDLSD
A
JCSG-385698
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 8482
sample
BVU_2238, YP_001299520.1
435590
Bacteroides vulgatus
562
Escherichia Coli
PB1
Plasmid
SpeedET
1
2.43
49.30
VAPOR DIFFUSION, SITTING DROP
10.5
0.200M lithium sulfate, 2.00M ammonium sulfate, 0.200M sodium thiocyanate, 0.1M CAPS pH 10.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
software
citation_author
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Structure summary
Refinement description
Database references
Database references
Derived calculations
1
0
2013-11-13
1
1
2014-12-24
1
2
2017-11-15
1
3
2018-01-24
1
4
2023-02-01
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2013-09-03
REL
REL
CXS
3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
SO4
SULFATE ION
EDO
1,2-ETHANEDIOL
CL
CHLORIDE ION
HOH
water
THIS CONSTRUCT (25-286) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
CXS
300
2
CXS
CXS
300
A
CXS
301
2
CXS
CXS
301
A
SO4
302
3
SO4
SO4
302
A
SO4
303
3
SO4
SO4
303
A
SO4
304
3
SO4
SO4
304
A
SO4
305
3
SO4
SO4
305
A
EDO
306
4
EDO
EDO
306
A
EDO
307
4
EDO
EDO
307
A
EDO
308
4
EDO
EDO
308
A
EDO
309
4
EDO
EDO
309
A
EDO
310
4
EDO
EDO
310
A
CL
311
5
CL
CL
311
A
CL
312
5
CL
CL
312
A
CL
313
5
CL
CL
313
A
CL
314
5
CL
CL
314
A
HOH
315
6
HOH
HOH
401
A
HOH
316
6
HOH
HOH
402
A
HOH
317
6
HOH
HOH
403
A
HOH
318
6
HOH
HOH
404
A
HOH
319
6
HOH
HOH
405
A
HOH
320
6
HOH
HOH
406
A
HOH
321
6
HOH
HOH
407
A
HOH
322
6
HOH
HOH
408
A
HOH
323
6
HOH
HOH
409
A
HOH
324
6
HOH
HOH
410
A
HOH
325
6
HOH
HOH
411
A
HOH
326
6
HOH
HOH
412
A
HOH
327
6
HOH
HOH
413
A
HOH
328
6
HOH
HOH
414
A
HOH
329
6
HOH
HOH
415
A
HOH
330
6
HOH
HOH
416
A
HOH
331
6
HOH
HOH
417
A
HOH
332
6
HOH
HOH
418
A
HOH
333
6
HOH
HOH
419
A
HOH
334
6
HOH
HOH
420
A
HOH
335
6
HOH
HOH
421
A
HOH
336
6
HOH
HOH
422
A
HOH
337
6
HOH
HOH
423
A
HOH
338
6
HOH
HOH
424
A
HOH
339
6
HOH
HOH
425
A
HOH
340
6
HOH
HOH
426
A
HOH
341
6
HOH
HOH
427
A
HOH
342
6
HOH
HOH
428
A
HOH
343
6
HOH
HOH
429
A
HOH
344
6
HOH
HOH
430
A
HOH
345
6
HOH
HOH
431
A
HOH
346
6
HOH
HOH
432
A
HOH
347
6
HOH
HOH
433
A
HOH
348
6
HOH
HOH
434
A
HOH
349
6
HOH
HOH
435
A
HOH
350
6
HOH
HOH
436
A
HOH
351
6
HOH
HOH
437
A
HOH
352
6
HOH
HOH
438
A
HOH
353
6
HOH
HOH
439
A
HOH
354
6
HOH
HOH
440
A
HOH
355
6
HOH
HOH
441
A
HOH
356
6
HOH
HOH
442
A
HOH
357
6
HOH
HOH
443
A
HOH
358
6
HOH
HOH
444
A
HOH
359
6
HOH
HOH
445
A
HOH
360
6
HOH
HOH
446
A
HOH
361
6
HOH
HOH
447
A
HOH
362
6
HOH
HOH
448
A
HOH
363
6
HOH
HOH
449
A
HOH
364
6
HOH
HOH
450
A
HOH
365
6
HOH
HOH
451
A
HOH
366
6
HOH
HOH
452
A
HOH
367
6
HOH
HOH
453
A
HOH
368
6
HOH
HOH
454
A
HOH
369
6
HOH
HOH
455
A
HOH
370
6
HOH
HOH
456
A
HOH
371
6
HOH
HOH
457
A
HOH
372
6
HOH
HOH
458
A
HOH
373
6
HOH
HOH
459
A
HOH
374
6
HOH
HOH
460
A
HOH
375
6
HOH
HOH
461
A
HOH
376
6
HOH
HOH
462
A
HOH
377
6
HOH
HOH
463
A
HOH
378
6
HOH
HOH
464
A
HOH
379
6
HOH
HOH
465
A
HOH
380
6
HOH
HOH
466
A
HOH
381
6
HOH
HOH
467
A
HOH
382
6
HOH
HOH
468
A
HOH
383
6
HOH
HOH
469
A
HOH
384
6
HOH
HOH
470
A
HOH
385
6
HOH
HOH
471
A
HOH
386
6
HOH
HOH
472
A
HOH
387
6
HOH
HOH
473
A
HOH
388
6
HOH
HOH
474
A
HOH
389
6
HOH
HOH
475
A
HOH
390
6
HOH
HOH
476
A
HOH
391
6
HOH
HOH
477
A
HOH
392
6
HOH
HOH
478
A
HOH
393
6
HOH
HOH
479
A
HOH
394
6
HOH
HOH
480
A
HOH
395
6
HOH
HOH
481
A
HOH
396
6
HOH
HOH
482
A
HOH
397
6
HOH
HOH
483
A
HOH
398
6
HOH
HOH
484
A
HOH
399
6
HOH
HOH
485
A
HOH
400
6
HOH
HOH
486
A
HOH
401
6
HOH
HOH
487
A
HOH
402
6
HOH
HOH
488
A
HOH
403
6
HOH
HOH
489
A
HOH
404
6
HOH
HOH
490
A
HOH
405
6
HOH
HOH
491
A
HOH
406
6
HOH
HOH
492
A
HOH
407
6
HOH
HOH
493
A
HOH
408
6
HOH
HOH
494
A
HOH
409
6
HOH
HOH
495
A
HOH
410
6
HOH
HOH
496
A
HOH
411
6
HOH
HOH
497
A
HOH
412
6
HOH
HOH
498
A
HOH
413
6
HOH
HOH
499
A
HOH
414
6
HOH
HOH
500
A
HOH
415
6
HOH
HOH
501
A
HOH
416
6
HOH
HOH
502
A
HOH
417
6
HOH
HOH
503
A
HOH
418
6
HOH
HOH
504
A
HOH
419
6
HOH
HOH
505
A
HOH
420
6
HOH
HOH
506
A
HOH
421
6
HOH
HOH
507
A
HOH
422
6
HOH
HOH
508
A
HOH
423
6
HOH
HOH
509
A
HOH
424
6
HOH
HOH
510
A
HOH
425
6
HOH
HOH
511
A
HOH
426
6
HOH
HOH
512
A
HOH
427
6
HOH
HOH
513
A
HOH
428
6
HOH
HOH
514
A
HOH
429
6
HOH
HOH
515
A
HOH
430
6
HOH
HOH
516
A
HOH
431
6
HOH
HOH
517
A
HOH
432
6
HOH
HOH
518
A
HOH
433
6
HOH
HOH
519
A
HOH
434
6
HOH
HOH
520
A
HOH
435
6
HOH
HOH
521
A
HOH
436
6
HOH
HOH
522
A
HOH
437
6
HOH
HOH
523
A
n
1
0
A
n
2
25
A
n
3
26
A
n
4
27
A
n
5
28
A
n
6
29
A
n
7
30
A
n
8
31
A
n
9
32
A
n
10
33
A
n
11
34
A
n
12
35
A
n
13
36
A
n
14
37
A
n
15
38
A
n
16
39
A
n
17
40
A
n
18
41
A
n
19
42
A
n
20
43
A
n
21
44
A
n
22
45
A
n
23
46
A
n
24
47
A
n
25
48
A
n
26
49
A
n
27
50
A
n
28
51
A
n
29
52
A
n
30
53
A
n
31
54
A
n
32
55
A
n
33
56
A
n
34
57
A
n
35
58
A
n
36
59
A
ALA
60
n
37
ALA
60
A
ASP
61
n
38
ASP
61
A
GLU
62
n
39
GLU
62
A
SER
63
n
40
SER
63
A
PHE
64
n
41
PHE
64
A
ALA
65
n
42
ALA
65
A
ASP
66
n
43
ASP
66
A
PHE
67
n
44
PHE
67
A
PHE
68
n
45
PHE
68
A
TYR
69
n
46
TYR
69
A
ASN
70
n
47
ASN
70
A
PHE
71
n
48
PHE
71
A
ALA
72
n
49
ALA
72
A
SER
73
n
50
SER
73
A
ASP
74
n
51
ASP
74
A
GLU
75
n
52
GLU
75
A
LYS
76
n
53
LYS
76
A
LEU
77
n
54
LEU
77
A
GLN
78
n
55
GLN
78
A
LEU
79
n
56
LEU
79
A
SER
80
n
57
SER
80
A
ARG
81
n
58
ARG
81
A
ILE
82
n
59
ILE
82
A
VAL
83
n
60
VAL
83
A
PHE
84
n
61
PHE
84
A
PRO
85
n
62
PRO
85
A
LEU
86
n
63
LEU
86
A
PRO
87
n
64
PRO
87
A
TYR
88
n
65
TYR
88
A
TYR
89
n
66
TYR
89
A
THR
90
n
67
THR
90
A
MSE
91
n
68
MSE
91
A
GLU
92
n
69
GLU
92
A
LYS
93
n
70
LYS
93
A
LYS
94
n
71
LYS
94
A
GLU
95
n
72
GLU
95
A
HIS
96
n
73
HIS
96
A
ILE
97
n
74
ILE
97
A
GLU
98
n
75
GLU
98
A
LYS
99
n
76
LYS
99
A
ASP
100
n
77
ASP
100
A
GLN
101
n
78
GLN
101
A
TRP
102
n
79
TRP
102
A
LYS
103
n
80
LYS
103
A
HIS
104
n
81
HIS
104
A
ASP
105
n
82
ASP
105
A
PRO
106
n
83
PRO
106
A
LEU
107
n
84
LEU
107
A
PHE
108
n
85
PHE
108
A
SER
109
n
86
SER
109
A
ARG
110
n
87
ARG
110
A
GLN
111
n
88
GLN
111
A
ASP
112
n
89
ASP
112
A
ALA
113
n
90
ALA
113
A
TYR
114
n
91
TYR
114
A
THR
115
n
92
THR
115
A
VAL
116
n
93
VAL
116
A
LEU
117
n
94
LEU
117
A
PHE
118
n
95
PHE
118
A
ASP
119
n
96
ASP
119
A
LYS
120
n
97
LYS
120
A
ALA
121
n
98
ALA
121
A
GLU
122
n
99
GLU
122
A
ASP
123
n
100
ASP
123
A
MSE
124
n
101
MSE
124
A
GLU
125
n
102
GLU
125
A
MSE
126
n
103
MSE
126
A
n
104
127
A
n
105
128
A
ASP
129
n
106
ASP
129
A
THR
130
n
107
THR
130
A
GLY
131
n
108
GLY
131
A
LEU
132
n
109
LEU
132
A
THR
133
n
110
THR
133
A
SER
134
n
111
SER
134
A
VAL
135
n
112
VAL
135
A
LYS
136
n
113
LYS
136
A
ILE
137
n
114
ILE
137
A
GLU
138
n
115
GLU
138
A
TRP
139
n
116
TRP
139
A
ILE
140
n
117
ILE
140
A
TYR
141
n
118
TYR
141
A
LEU
142
n
119
LEU
142
A
LYS
143
n
120
LYS
143
A
LYS
144
n
121
LYS
144
A
GLY
145
n
122
GLY
145
A
LYS
146
n
123
LYS
146
A
ILE
147
n
124
ILE
147
A
LYS
148
n
125
LYS
148
A
ARG
149
n
126
ARG
149
A
TYR
150
n
127
TYR
150
A
TYR
151
n
128
TYR
151
A
PHE
152
n
129
PHE
152
A
GLU
153
n
130
GLU
153
A
ARG
154
n
131
ARG
154
A
LEU
155
n
132
LEU
155
A
LYS
156
n
133
LYS
156
A
GLY
157
n
134
GLY
157
A
LEU
158
n
135
LEU
158
A
TRP
159
n
136
TRP
159
A
LYS
160
n
137
LYS
160
A
LEU
161
n
138
LEU
161
A
GLU
162
n
139
GLU
162
A
ALA
163
n
140
ALA
163
A
ILE
164
n
141
ILE
164
A
ASP
165
n
142
ASP
165
A
PHE
166
n
143
PHE
166
A
ALA
167
n
144
ALA
167
A
ASP
168
n
145
ASP
168
A
MSE
169
n
146
MSE
169
A
PRO
170
n
147
PRO
170
A
ARG
171
n
148
ARG
171
A
GLU
172
n
149
GLU
172
A
ASP
173
n
150
ASP
173
A
THR
174
n
151
THR
174
A
GLY
175
n
152
GLY
175
A
LYS
176
n
153
LYS
176
A
GLU
177
n
154
GLU
177
A
ASP
178
n
155
ASP
178
A
PHE
179
n
156
PHE
179
A
PHE
180
n
157
PHE
180
A
GLU
181
n
158
GLU
181
A
PHE
182
n
159
PHE
182
A
TYR
183
n
160
TYR
183
A
GLU
184
n
161
GLU
184
A
ARG
185
n
162
ARG
185
A
PHE
186
n
163
PHE
186
A
ALA
187
n
164
ALA
187
A
ASN
188
n
165
ASN
188
A
ASP
189
n
166
ASP
189
A
SER
190
n
167
SER
190
A
VAL
191
n
168
VAL
191
A
PHE
192
n
169
PHE
192
A
GLN
193
n
170
GLN
193
A
LEU
194
n
171
LEU
194
A
SER
195
n
172
SER
195
A
ARG
196
n
173
ARG
196
A
LEU
197
n
174
LEU
197
A
HIS
198
n
175
HIS
198
A
GLU
199
n
176
GLU
199
A
PRO
200
n
177
PRO
200
A
LEU
201
n
178
LEU
201
A
LYS
202
n
179
LYS
202
A
PHE
203
n
180
PHE
203
A
VAL
204
n
181
VAL
204
A
THR
205
n
182
THR
205
A
ALA
206
n
183
ALA
206
A
ASP
207
n
184
ASP
207
A
PRO
208
n
185
PRO
208
A
GLU
209
n
186
GLU
209
A
ASP
210
n
187
ASP
210
A
GLU
211
n
188
GLU
211
A
PHE
212
n
189
PHE
212
A
GLN
213
n
190
GLN
213
A
ILE
214
n
191
ILE
214
A
LEU
215
n
192
LEU
215
A
GLU
216
n
193
GLU
216
A
THR
217
n
194
THR
217
A
THR
218
n
195
THR
218
A
LEU
219
n
196
LEU
219
A
GLU
220
n
197
GLU
220
A
ALA
221
n
198
ALA
221
A
GLY
222
n
199
GLY
222
A
GLN
223
n
200
GLN
223
A
TRP
224
n
201
TRP
224
A
PHE
225
n
202
PHE
225
A
ALA
226
n
203
ALA
226
A
PHE
227
n
204
PHE
227
A
GLN
228
n
205
GLN
228
A
PRO
229
n
206
PRO
229
A
VAL
230
n
207
VAL
230
A
LEU
231
n
208
LEU
231
A
PRO
232
n
209
PRO
232
A
ARG
233
n
210
ARG
233
A
GLU
234
n
211
GLU
234
A
ASN
235
n
212
ASN
235
A
LEU
236
n
213
LEU
236
A
THR
237
n
214
THR
237
A
ASN
238
n
215
ASN
238
A
VAL
239
n
216
VAL
239
A
ASN
240
n
217
ASN
240
A
TYR
241
n
218
TYR
241
A
GLY
242
n
219
GLY
242
A
GLN
243
n
220
GLN
243
A
ASN
244
n
221
ASN
244
A
GLU
245
n
222
GLU
245
A
ASN
246
n
223
ASN
246
A
VAL
247
n
224
VAL
247
A
HIS
248
n
225
HIS
248
A
SER
249
n
226
SER
249
A
ASN
250
n
227
ASN
250
A
THR
251
n
228
THR
251
A
LYS
252
n
229
LYS
252
A
VAL
253
n
230
VAL
253
A
ILE
254
n
231
ILE
254
A
GLU
255
n
232
GLU
255
A
MSE
256
n
233
MSE
256
A
LYS
257
n
234
LYS
257
A
GLY
258
n
235
GLY
258
A
PHE
259
n
236
PHE
259
A
GLY
260
n
237
GLY
260
A
ASN
261
n
238
ASN
261
A
GLY
262
n
239
GLY
262
A
PHE
263
n
240
PHE
263
A
ASN
264
n
241
ASN
264
A
ASN
265
n
242
ASN
265
A
THR
266
n
243
THR
266
A
LEU
267
n
244
LEU
267
A
TYR
268
n
245
TYR
268
A
PHE
269
n
246
PHE
269
A
GLU
270
n
247
GLU
270
A
ARG
271
n
248
ARG
271
A
ARG
272
n
249
ARG
272
A
HIS
273
n
250
HIS
273
A
GLY
274
n
251
GLY
274
A
LEU
275
n
252
LEU
275
A
TRP
276
n
253
TRP
276
A
LYS
277
n
254
LYS
277
A
LEU
278
n
255
LEU
278
A
MSE
279
n
256
MSE
279
A
GLN
280
n
257
GLN
280
A
PHE
281
n
258
PHE
281
A
GLU
282
n
259
GLU
282
A
ASP
283
n
260
ASP
283
A
LEU
284
n
261
LEU
284
A
SER
285
n
262
SER
285
A
ASP
286
n
263
ASP
286
A
0.6450
-0.0621
-0.4588
2.0787
1.7487
2.1713
-0.1326
-0.0515
-0.0237
0.0240
0.0990
0.0620
0.1407
0.1667
0.0336
-0.0698
0.1045
-0.0019
-0.0239
0.0753
-0.0879
refined
28.0141
64.2834
17.8915
X-RAY DIFFRACTION
A
60
A
286
X-RAY DIFFRACTION
1
{ A|60 - 286 }
author_and_software_defined_assembly
PISA
2
dimeric
6540
-178
24070
A
MSE
91
SELENOMETHIONINE
A
MSE
68
MET
A
MSE
124
SELENOMETHIONINE
A
MSE
101
MET
A
MSE
126
SELENOMETHIONINE
A
MSE
103
MET
A
MSE
169
SELENOMETHIONINE
A
MSE
146
MET
A
MSE
256
SELENOMETHIONINE
A
MSE
233
MET
A
MSE
279
SELENOMETHIONINE
A
MSE
256
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_655
-x+1,y,-z
crystal symmetry operation
64.7190000000
0.0000000000
0.0000000000
A
O
GLU
95
A
O
GLU
72
A
N
TYR
88
A
N
TYR
65
A
N
TYR
89
A
N
TYR
66
A
O
ILE
164
A
O
ILE
141
A
O
LEU
158
A
O
LEU
135
A
N
LEU
155
A
N
LEU
132
A
O
LYS
146
A
O
LYS
123
A
N
TYR
141
A
N
TYR
118
A
N
ILE
140
A
N
ILE
117
A
O
LEU
236
A
O
LEU
213
A
N
TYR
114
A
N
TYR
91
A
O
LYS
257
A
O
LYS
234
A
N
MSE
256
A
N
MSE
233
A
O
ASN
265
A
O
ASN
242
A
N
THR
266
A
N
THR
243
A
O
GLU
282
A
O
GLU
259
A
O
ASP
283
A
O
ASP
260
A
N
VAL
204
A
N
VAL
181
A
N
THR
205
A
N
THR
182
A
O
LEU
215
A
O
LEU
192
1
A
CL
313
O
CL
1
A
CG
LYS
120
A
CG
LYS
97
1
Y
1
A
CD
LYS
120
A
CD
LYS
97
1
Y
1
A
CE
LYS
120
A
CE
LYS
97
1
Y
1
A
NZ
LYS
120
A
NZ
LYS
97
1
Y
1
A
CG
GLU
125
A
CG
GLU
102
1
Y
1
A
CD
GLU
125
A
CD
GLU
102
1
Y
1
A
OE1
GLU
125
A
OE1
GLU
102
1
Y
1
A
OE2
GLU
125
A
OE2
GLU
102
1
Y
1
A
CG
ASP
173
A
CG
ASP
150
1
Y
1
A
OD1
ASP
173
A
OD1
ASP
150
1
Y
1
A
OD2
ASP
173
A
OD2
ASP
150
1
Y
1
A
OG1
THR
174
A
OG1
THR
151
1
Y
1
A
CG2
THR
174
A
CG2
THR
151
1
Y
1
A
CG
GLU
209
A
CG
GLU
186
1
Y
1
A
CD
GLU
209
A
CD
GLU
186
1
Y
1
A
OE1
GLU
209
A
OE1
GLU
186
1
Y
1
A
OE2
GLU
209
A
OE2
GLU
186
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
ASP
25
A
ASP
2
1
Y
1
A
PRO
26
A
PRO
3
1
Y
1
A
PHE
27
A
PHE
4
1
Y
1
A
GLU
28
A
GLU
5
1
Y
1
A
THR
29
A
THR
6
1
Y
1
A
LEU
30
A
LEU
7
1
Y
1
A
THR
31
A
THR
8
1
Y
1
A
GLU
32
A
GLU
9
1
Y
1
A
GLU
33
A
GLU
10
1
Y
1
A
ILE
34
A
ILE
11
1
Y
1
A
ASP
35
A
ASP
12
1
Y
1
A
SER
36
A
SER
13
1
Y
1
A
LEU
37
A
LEU
14
1
Y
1
A
THR
38
A
THR
15
1
Y
1
A
ALA
39
A
ALA
16
1
Y
1
A
PRO
40
A
PRO
17
1
Y
1
A
PRO
41
A
PRO
18
1
Y
1
A
ASP
42
A
ASP
19
1
Y
1
A
THR
43
A
THR
20
1
Y
1
A
THR
44
A
THR
21
1
Y
1
A
GLU
45
A
GLU
22
1
Y
1
A
ALA
46
A
ALA
23
1
Y
1
A
MSE
47
A
MSE
24
1
Y
1
A
ALA
48
A
ALA
25
1
Y
1
A
ALA
49
A
ALA
26
1
Y
1
A
VAL
50
A
VAL
27
1
Y
1
A
GLU
51
A
GLU
28
1
Y
1
A
GLU
52
A
GLU
29
1
Y
1
A
GLU
53
A
GLU
30
1
Y
1
A
PRO
54
A
PRO
31
1
Y
1
A
MSE
55
A
MSE
32
1
Y
1
A
VAL
56
A
VAL
33
1
Y
1
A
PRO
57
A
PRO
34
1
Y
1
A
ALA
58
A
ALA
35
1
Y
1
A
THR
59
A
THR
36
1
Y
1
A
GLU
127
A
GLU
104
1
Y
1
A
LYS
128
A
LYS
105
1
Y
1
A
LEU
107
52.55
-115.80
1
A
THR
130
62.82
-14.35
1
A
ASP
173
-93.27
-158.06
1
A
GLU
209
-116.22
-120.14
1
A
PHE
212
58.10
11.41
145.030
55.0599
31.850
0.1259
0.0000
1.3610
1.0088
0.0000
-1.1348
0.9586
0.9526
1.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3.ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4.SULFATE (SO4), CAPS (CXS), CHLORIDE (CL) AND 1,2-ETHANEDIOL (EDO) FROM THE CRYSTALLIZATION AND CRYOPROTECTANT SOLUTION HAVE BEEN MODELED. 5.RESIDUES 173-174 ARE IN A REGION OF ELECTRON DENSITY THAT IS NOT WELL-DEFINED.
0.2196
0.1911
0.1926
1.9900
48.085
1034
20230
5.1100
97.8100
1.000
0.300
RANDOM
1
THROUGHOUT
0.000
SAD
0.317
1.9900
48.085
123
2087
72
0
1892
944
SINUSOIDAL
2.000
61
HARMONIC
2.000
286
HARMONIC
5.000
2039
HARMONIC
20.000
239
SEMIHARMONIC
5.000
2310
SEMIHARMONIC
4.000
0.010
2039
HARMONIC
2.000
1.010
2751
HARMONIC
2.000
3.610
2.870
0.2152
0.2089
0.2092
2.1000
160
2834
2994
10
5.3400
97.8100
44.225
0.999
1.99
48.085
4MJF
20233
-3.000
0.037
0.044
1
15.210
67280
97.600
0.728
0.562
1.990
2.060
2.1
6720
2020
1999
0.669
1
99.000
0.851
0.408
2.060
2.140
3.0
6789
1998
1976
0.484
1
98.900
0.924
0.273
2.140
2.240
4.3
6989
2117
2082
0.326
1
98.300
0.961
0.180
2.240
2.360
6.3
6599
2112
2054
0.217
1
97.300
0.986
0.113
2.360
2.510
9.8
7183
2097
2071
0.134
1
98.800
0.993
0.076
2.510
2.700
13.5
6617
2009
1958
0.090
1
97.500
0.997
0.049
2.700
2.970
19.1
6486
2052
1977
0.059
1
96.300
0.999
0.033
2.970
3.400
26.5
6853
2072
2025
0.039
1
97.700
0.999
0.025
3.400
4.270
33.0
6529
2064
1992
0.029
1
96.500
0.998
0.030
4.270
34.7
6515
2146
2059
0.036
1
95.900
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
Eric de La Fortelle
sharp-develop@globalphasing.com
http://www.globalphasing.com/sharp/
SHARP
package
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
2.10.0
data reduction
XDS
phasing
SHELXD
refinement
BUSTER
2.10.0
Crystal structure of a DUF4348 family protein (BVU_2238) from Bacteroides vulgatus ATCC 8482 at 1.99 A resolution
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
6
N
N
A
SER
63
A
SER
40
HELX_P
A
ASP
74
A
ASP
51
1
1
12
A
ASP
74
A
ASP
51
HELX_P
A
ARG
81
A
ARG
58
1
2
8
A
GLU
98
A
GLU
75
HELX_P
A
TRP
102
A
TRP
79
5
3
5
A
LYS
120
A
LYS
97
HELX_P
A
GLU
125
A
GLU
102
5
4
6
A
ASP
178
A
ASP
155
HELX_P
A
ASP
189
A
ASP
166
1
5
12
A
ASP
189
A
ASP
166
HELX_P
A
ARG
196
A
ARG
173
1
6
8
A
GLU
220
A
GLU
197
HELX_P
A
GLN
228
A
GLN
205
1
7
9
covale
1.339
both
A
THR
90
A
C
THR
67
1_555
A
MSE
91
A
N
MSE
68
1_555
covale
1.345
both
A
MSE
91
A
C
MSE
68
1_555
A
GLU
92
A
N
GLU
69
1_555
covale
1.356
both
A
ASP
123
A
C
ASP
100
1_555
A
MSE
124
A
N
MSE
101
1_555
covale
1.348
both
A
MSE
124
A
C
MSE
101
1_555
A
GLU
125
A
N
GLU
102
1_555
covale
1.354
both
A
GLU
125
A
C
GLU
102
1_555
A
MSE
126
A
N
MSE
103
1_555
covale
1.338
both
A
ASP
168
A
C
ASP
145
1_555
A
MSE
169
A
N
MSE
146
1_555
covale
1.358
both
A
MSE
169
A
C
MSE
146
1_555
A
PRO
170
A
N
PRO
147
1_555
covale
1.338
both
A
GLU
255
A
C
GLU
232
1_555
A
MSE
256
A
N
MSE
233
1_555
covale
1.353
both
A
MSE
256
A
C
MSE
233
1_555
A
LYS
257
A
N
LYS
234
1_555
covale
1.343
both
A
LEU
278
A
C
LEU
255
1_555
A
MSE
279
A
N
MSE
256
1_555
covale
1.341
both
A
MSE
279
A
C
MSE
256
1_555
A
GLN
280
A
N
GLN
257
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
PF14254 family, DUF4348, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION
A
PHE
84
A
PHE
61
1
A
PRO
85
A
PRO
62
0.17
A
GLU
199
A
GLU
176
1
A
PRO
200
A
PRO
177
3.71
A6L2I4_BACV8
UNP
1
25
A6L2I4
DPFETLTEEIDSLTAPPDTTEAMAAVEEEPMVPATADESFADFFYNFASDEKLQLSRIVFPLPYYTMEKKEHIEKDQWKH
DPLFSRQDAYTVLFDKAEDMEMEKDTGLTSVKIEWIYLKKGKIKRYYFERLKGLWKLEAIDFADMPREDTGKEDFFEFYE
RFANDSVFQLSRLHEPLKFVTADPEDEFQILETTLEAGQWFAFQPVLPRENLTNVNYGQNENVHSNTKVIEMKGFGNGFN
NTLYFERRHGLWKLMQFEDLSD
25
286
4MJF
25
286
A6L2I4
A
1
2
263
1
expression tag
GLY
0
4MJF
A
A6L2I4
UNP
1
6
6
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
LYS
93
A
LYS
70
A
ILE
97
A
ILE
74
A
LEU
86
A
LEU
63
A
THR
90
A
THR
67
A
LEU
158
A
LEU
135
A
ASP
168
A
ASP
145
A
LYS
146
A
LYS
123
A
LEU
155
A
LEU
132
A
SER
134
A
SER
111
A
TYR
141
A
TYR
118
A
ASN
235
A
ASN
212
A
ASN
240
A
ASN
217
A
ALA
113
A
ALA
90
A
PHE
118
A
PHE
95
A
THR
251
A
THR
228
A
GLY
258
A
GLY
235
A
ASN
264
A
ASN
241
A
ARG
272
A
ARG
249
A
LEU
275
A
LEU
252
A
ASP
283
A
ASP
260
A
LEU
197
A
LEU
174
A
ALA
206
A
ALA
183
A
ILE
214
A
ILE
191
A
LEU
219
A
LEU
196
BINDING SITE FOR RESIDUE CXS A 300
A
CXS
300
Software
7
BINDING SITE FOR RESIDUE CXS A 301
A
CXS
301
Software
5
BINDING SITE FOR RESIDUE SO4 A 302
A
SO4
302
Software
5
BINDING SITE FOR RESIDUE SO4 A 303
A
SO4
303
Software
6
BINDING SITE FOR RESIDUE SO4 A 304
A
SO4
304
Software
7
BINDING SITE FOR RESIDUE SO4 A 305
A
SO4
305
Software
3
BINDING SITE FOR RESIDUE EDO A 306
A
EDO
306
Software
8
BINDING SITE FOR RESIDUE EDO A 307
A
EDO
307
Software
5
BINDING SITE FOR RESIDUE EDO A 308
A
EDO
308
Software
3
BINDING SITE FOR RESIDUE EDO A 309
A
EDO
309
Software
5
BINDING SITE FOR RESIDUE EDO A 310
A
EDO
310
Software
1
BINDING SITE FOR RESIDUE CL A 311
A
CL
311
Software
1
BINDING SITE FOR RESIDUE CL A 312
A
CL
312
Software
1
BINDING SITE FOR RESIDUE CL A 313
A
CL
313
Software
2
A
PHE
108
A
PHE
85
7
1_555
A
TYR
114
A
TYR
91
7
1_555
A
PHE
259
A
PHE
236
7
1_555
A
GLY
260
A
GLY
237
7
1_555
A
EDO
310
L
EDO
7
1_555
A
HOH
444
Q
HOH
7
1_555
A
HOH
497
Q
HOH
7
1_555
A
TYR
89
A
TYR
66
5
1_555
A
ARG
149
A
ARG
126
5
1_555
A
GLU
153
A
GLU
130
5
2_656
A
ASP
165
A
ASP
142
5
1_555
A
ALA
167
A
ALA
144
5
1_555
A
ARG
272
A
ARG
249
5
1_555
A
HIS
273
A
HIS
250
5
1_555
A
HOH
401
Q
HOH
5
1_555
A
HOH
435
Q
HOH
5
1_555
A
HOH
492
Q
HOH
5
3_545
A
LEU
158
A
LEU
135
6
3_545
A
LYS
176
A
LYS
153
6
1_555
A
ASN
250
A
ASN
227
6
1_555
A
ARG
271
A
ARG
248
6
1_555
A
HOH
440
Q
HOH
6
1_555
A
HOH
481
Q
HOH
6
1_555
A
LYS
76
A
LYS
53
7
3_545
A
GLU
177
A
GLU
154
7
1_555
A
GLU
181
A
GLU
158
7
1_555
A
PHE
182
A
PHE
159
7
1_555
A
ARG
185
A
ARG
162
7
1_555
A
PHE
192
A
PHE
169
7
1_555
A
HOH
453
Q
HOH
7
3_545
A
ARG
233
A
ARG
210
3
1_555
A
GLU
234
A
GLU
211
3
1_555
A
ASN
235
A
ASN
212
3
1_555
A
LEU
117
A
LEU
94
8
1_555
A
PHE
118
A
PHE
95
8
1_555
A
ASP
119
A
ASP
96
8
1_555
A
ASN
238
A
ASN
215
8
1_555
A
GLN
243
A
GLN
220
8
1_555
A
ASN
244
A
ASN
221
8
1_555
A
GLU
245
A
GLU
222
8
1_555
A
LYS
252
A
LYS
229
8
1_555
A
PHE
68
A
PHE
45
5
1_555
A
TYR
69
A
TYR
46
5
1_555
A
SER
109
A
SER
86
5
1_555
A
PHE
259
A
PHE
236
5
1_555
A
HOH
444
Q
HOH
5
1_555
A
GLU
199
A
GLU
176
3
1_555
A
HOH
435
Q
HOH
3
1_555
A
HOH
449
Q
HOH
3
1_555
A
LYS
136
A
LYS
113
5
1_555
A
ASN
240
A
ASN
217
5
1_555
A
GLN
243
A
GLN
220
5
1_555
A
GLU
245
A
GLU
222
5
1_555
A
HOH
427
Q
HOH
5
1_555
A
CXS
300
B
CXS
1
1_555
A
HIS
198
A
HIS
175
1
1_555
A
HIS
273
A
HIS
250
1
1_555
A
GLY
222
A
GLY
199
2
1_555
A
GLY
222
A
GLY
199
2
2_655
5
C 1 2 1