0.035393
0.000000
0.008451
0.000000
0.015005
0.000000
0.000000
0.000000
0.031519
0.00000
0.00000
0.00000
Galilee, M.
Alian, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
103.43
90.00
28.254
66.643
32.619
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
O
N
21
N
N
N
22
N
O
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
N
N
32
S
C
N
33
N
C
N
34
N
O
N
35
N
C
N
36
N
C
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
N
N
48
R
C
N
49
N
C
N
50
N
O
N
51
N
C
N
52
N
S
N
53
N
O
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
N
N
62
S
C
N
63
N
C
N
64
N
O
N
65
N
C
N
66
N
C
N
67
N
C
N
68
N
O
N
69
N
N
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
N
N
82
S
C
N
83
N
C
N
84
N
O
N
85
N
C
N
86
N
C
N
87
N
C
N
88
N
O
N
89
N
O
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
Y
115
N
C
Y
116
N
N
Y
117
N
C
Y
118
N
C
Y
119
N
N
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
N
N
135
S
C
N
136
N
C
N
137
N
O
N
138
S
C
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
N
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
N
C
N
208
N
C
N
209
N
S
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
N
N
224
S
C
N
225
N
C
N
226
N
O
N
227
N
C
Y
228
N
C
Y
229
N
C
Y
230
N
C
Y
231
N
C
Y
232
N
C
Y
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
O
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
R
C
N
282
N
O
N
283
N
C
N
284
N
O
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
N
Y
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
N
332
N
O
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
doub
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
Y
114
N
sing
Y
115
N
doub
Y
116
N
doub
N
117
N
sing
Y
118
N
sing
N
119
N
sing
Y
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
doub
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
Y
222
N
doub
Y
223
N
sing
Y
224
N
sing
N
225
N
sing
Y
226
N
doub
N
227
N
sing
Y
228
N
doub
N
229
N
sing
Y
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
Y
291
N
doub
Y
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
doub
Y
296
N
sing
Y
297
N
sing
N
298
N
sing
Y
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
doub
N
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
UK
Structure
STRUE6
2005
0969-2126
22
1512
1519
10.1016/j.str.2014.08.001
25199694
Identification of phe187 as a crucial dimerization determinant facilitates crystallization of a monomeric retroviral integrase core domain.
2014
10.2210/pdb4mq3/pdb
pdb_00004mq3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
103
1
mirrors
PIXEL
2013-07-30
DECTRIS PILATUS 6M
Double Crystal Monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.918409
1.0
14.1
BESSY
0.918409
SYNCHROTRON
BESSY BEAMLINE 14.1
14667.780
Integrase
Catalytic Core Domain
F1030K
1
man
polymer
18.015
water
186
nat
water
IN
no
no
GSHMGIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPNFKNQKMEGVLNYMG
VKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAVHSLNKK
GSHMGIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPNFKNQKMEGVLNYMG
VKHKFGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAVHSLNKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
FIV
isolate Petaluma
sample
pol
11674
Feline immunodeficiency virus
562
Escherichia coli
ArcticExpress (DE3)
plasmid
pET28b
1
2.07
40.64
VAPOR DIFFUSION
8.5
0.2M Trimethylamine N-oxide, 0.1M Tris pH 8.5, 20% PEG MME 2000, VAPOR DIFFUSION, temperature 293K
293
VAPOR DIFFUSION
5.5
0.2M Ammonium acetate, 0.1M Bis-Tris pH 5.5, 25% PEG 3350, VAPOR DIFFUSION, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2014-09-17
1
1
2014-11-19
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2013-09-15
REL
REL
HOH
water
3F9K
PDB ENTRY 3f9k
PDB
experimental model
HOH
1
2
HOH
HOH
201
A
HOH
2
2
HOH
HOH
202
A
HOH
3
2
HOH
HOH
203
A
HOH
4
2
HOH
HOH
204
A
HOH
5
2
HOH
HOH
205
A
HOH
6
2
HOH
HOH
206
A
HOH
7
2
HOH
HOH
207
A
HOH
8
2
HOH
HOH
208
A
HOH
9
2
HOH
HOH
209
A
HOH
10
2
HOH
HOH
210
A
HOH
11
2
HOH
HOH
211
A
HOH
12
2
HOH
HOH
212
A
HOH
13
2
HOH
HOH
213
A
HOH
14
2
HOH
HOH
214
A
HOH
15
2
HOH
HOH
215
A
HOH
16
2
HOH
HOH
216
A
HOH
17
2
HOH
HOH
217
A
HOH
18
2
HOH
HOH
218
A
HOH
19
2
HOH
HOH
219
A
HOH
20
2
HOH
HOH
220
A
HOH
21
2
HOH
HOH
221
A
HOH
22
2
HOH
HOH
222
A
HOH
23
2
HOH
HOH
223
A
HOH
24
2
HOH
HOH
224
A
HOH
25
2
HOH
HOH
225
A
HOH
26
2
HOH
HOH
226
A
HOH
27
2
HOH
HOH
227
A
HOH
28
2
HOH
HOH
228
A
HOH
29
2
HOH
HOH
229
A
HOH
30
2
HOH
HOH
230
A
HOH
31
2
HOH
HOH
231
A
HOH
32
2
HOH
HOH
232
A
HOH
33
2
HOH
HOH
233
A
HOH
34
2
HOH
HOH
234
A
HOH
35
2
HOH
HOH
235
A
HOH
36
2
HOH
HOH
236
A
HOH
37
2
HOH
HOH
237
A
HOH
38
2
HOH
HOH
238
A
HOH
39
2
HOH
HOH
239
A
HOH
40
2
HOH
HOH
240
A
HOH
41
2
HOH
HOH
241
A
HOH
42
2
HOH
HOH
242
A
HOH
43
2
HOH
HOH
243
A
HOH
44
2
HOH
HOH
244
A
HOH
45
2
HOH
HOH
245
A
HOH
46
2
HOH
HOH
246
A
HOH
47
2
HOH
HOH
247
A
HOH
48
2
HOH
HOH
248
A
HOH
49
2
HOH
HOH
249
A
HOH
50
2
HOH
HOH
250
A
HOH
51
2
HOH
HOH
251
A
HOH
52
2
HOH
HOH
252
A
HOH
53
2
HOH
HOH
253
A
HOH
54
2
HOH
HOH
254
A
HOH
55
2
HOH
HOH
255
A
HOH
56
2
HOH
HOH
256
A
HOH
57
2
HOH
HOH
257
A
HOH
58
2
HOH
HOH
258
A
HOH
59
2
HOH
HOH
259
A
HOH
60
2
HOH
HOH
260
A
HOH
61
2
HOH
HOH
261
A
HOH
62
2
HOH
HOH
262
A
HOH
63
2
HOH
HOH
263
A
HOH
64
2
HOH
HOH
264
A
HOH
65
2
HOH
HOH
265
A
HOH
66
2
HOH
HOH
266
A
HOH
67
2
HOH
HOH
267
A
HOH
68
2
HOH
HOH
268
A
HOH
69
2
HOH
HOH
269
A
HOH
70
2
HOH
HOH
270
A
HOH
71
2
HOH
HOH
271
A
HOH
72
2
HOH
HOH
272
A
HOH
73
2
HOH
HOH
273
A
HOH
74
2
HOH
HOH
274
A
HOH
75
2
HOH
HOH
275
A
HOH
76
2
HOH
HOH
276
A
HOH
77
2
HOH
HOH
277
A
HOH
78
2
HOH
HOH
278
A
HOH
79
2
HOH
HOH
279
A
HOH
80
2
HOH
HOH
280
A
HOH
81
2
HOH
HOH
281
A
HOH
82
2
HOH
HOH
282
A
HOH
83
2
HOH
HOH
283
A
HOH
84
2
HOH
HOH
284
A
HOH
85
2
HOH
HOH
285
A
HOH
86
2
HOH
HOH
286
A
HOH
87
2
HOH
HOH
287
A
HOH
88
2
HOH
HOH
288
A
HOH
89
2
HOH
HOH
289
A
HOH
90
2
HOH
HOH
290
A
HOH
91
2
HOH
HOH
291
A
HOH
92
2
HOH
HOH
292
A
HOH
93
2
HOH
HOH
293
A
HOH
94
2
HOH
HOH
294
A
HOH
95
2
HOH
HOH
295
A
HOH
96
2
HOH
HOH
296
A
HOH
97
2
HOH
HOH
297
A
HOH
98
2
HOH
HOH
298
A
HOH
99
2
HOH
HOH
299
A
HOH
100
2
HOH
HOH
300
A
HOH
101
2
HOH
HOH
301
A
HOH
102
2
HOH
HOH
302
A
HOH
103
2
HOH
HOH
303
A
HOH
104
2
HOH
HOH
304
A
HOH
105
2
HOH
HOH
305
A
HOH
106
2
HOH
HOH
306
A
HOH
107
2
HOH
HOH
307
A
HOH
108
2
HOH
HOH
308
A
HOH
109
2
HOH
HOH
309
A
HOH
110
2
HOH
HOH
310
A
HOH
111
2
HOH
HOH
311
A
HOH
112
2
HOH
HOH
312
A
HOH
113
2
HOH
HOH
313
A
HOH
114
2
HOH
HOH
314
A
HOH
115
2
HOH
HOH
315
A
HOH
116
2
HOH
HOH
316
A
HOH
117
2
HOH
HOH
317
A
HOH
118
2
HOH
HOH
318
A
HOH
119
2
HOH
HOH
319
A
HOH
120
2
HOH
HOH
320
A
HOH
121
2
HOH
HOH
321
A
HOH
122
2
HOH
HOH
322
A
HOH
123
2
HOH
HOH
323
A
HOH
124
2
HOH
HOH
324
A
HOH
125
2
HOH
HOH
325
A
HOH
126
2
HOH
HOH
326
A
HOH
127
2
HOH
HOH
327
A
HOH
128
2
HOH
HOH
328
A
HOH
129
2
HOH
HOH
329
A
HOH
130
2
HOH
HOH
330
A
HOH
131
2
HOH
HOH
331
A
HOH
132
2
HOH
HOH
332
A
HOH
133
2
HOH
HOH
333
A
HOH
134
2
HOH
HOH
334
A
HOH
135
2
HOH
HOH
335
A
HOH
136
2
HOH
HOH
336
A
HOH
137
2
HOH
HOH
337
A
HOH
138
2
HOH
HOH
338
A
HOH
139
2
HOH
HOH
339
A
HOH
140
2
HOH
HOH
340
A
HOH
141
2
HOH
HOH
341
A
HOH
142
2
HOH
HOH
342
A
HOH
143
2
HOH
HOH
343
A
HOH
144
2
HOH
HOH
344
A
HOH
145
2
HOH
HOH
345
A
HOH
147
2
HOH
HOH
346
A
HOH
148
2
HOH
HOH
347
A
HOH
149
2
HOH
HOH
348
A
HOH
151
2
HOH
HOH
349
A
HOH
152
2
HOH
HOH
350
A
HOH
153
2
HOH
HOH
351
A
HOH
154
2
HOH
HOH
352
A
HOH
155
2
HOH
HOH
353
A
HOH
156
2
HOH
HOH
354
A
HOH
157
2
HOH
HOH
355
A
HOH
158
2
HOH
HOH
356
A
HOH
159
2
HOH
HOH
357
A
HOH
160
2
HOH
HOH
358
A
HOH
161
2
HOH
HOH
359
A
HOH
162
2
HOH
HOH
360
A
HOH
163
2
HOH
HOH
361
A
HOH
164
2
HOH
HOH
362
A
HOH
166
2
HOH
HOH
363
A
HOH
167
2
HOH
HOH
364
A
HOH
168
2
HOH
HOH
365
A
HOH
169
2
HOH
HOH
366
A
HOH
171
2
HOH
HOH
367
A
HOH
172
2
HOH
HOH
368
A
HOH
173
2
HOH
HOH
369
A
HOH
174
2
HOH
HOH
370
A
HOH
175
2
HOH
HOH
371
A
HOH
176
2
HOH
HOH
372
A
HOH
177
2
HOH
HOH
373
A
HOH
178
2
HOH
HOH
374
A
HOH
179
2
HOH
HOH
375
A
HOH
180
2
HOH
HOH
376
A
HOH
181
2
HOH
HOH
377
A
HOH
182
2
HOH
HOH
378
A
HOH
183
2
HOH
HOH
379
A
HOH
184
2
HOH
HOH
380
A
HOH
185
2
HOH
HOH
381
A
HOH
186
2
HOH
HOH
382
A
HOH
187
2
HOH
HOH
383
A
HOH
188
2
HOH
HOH
384
A
HOH
189
2
HOH
HOH
385
A
HOH
1
2
HOH
HOH
386
A
n
1
57
A
n
2
58
A
n
3
59
A
MET
60
n
4
MET
60
A
GLY
61
n
5
GLY
61
A
ILE
62
n
6
ILE
62
A
TRP
63
n
7
TRP
63
A
GLN
64
n
8
GLN
64
A
MET
65
n
9
MET
65
A
ASP
66
n
10
ASP
66
A
CYS
67
n
11
CYS
67
A
THR
68
n
12
THR
68
A
HIS
69
n
13
HIS
69
A
PHE
70
n
14
PHE
70
A
ASP
71
n
15
ASP
71
A
GLY
72
n
16
GLY
72
A
LYS
73
n
17
LYS
73
A
ILE
74
n
18
ILE
74
A
ILE
75
n
19
ILE
75
A
LEU
76
n
20
LEU
76
A
VAL
77
n
21
VAL
77
A
GLY
78
n
22
GLY
78
A
ILE
79
n
23
ILE
79
A
HIS
80
n
24
HIS
80
A
VAL
81
n
25
VAL
81
A
GLU
82
n
26
GLU
82
A
SER
83
n
27
SER
83
A
GLY
84
n
28
GLY
84
A
TYR
85
n
29
TYR
85
A
ILE
86
n
30
ILE
86
A
TRP
87
n
31
TRP
87
A
ALA
88
n
32
ALA
88
A
GLN
89
n
33
GLN
89
A
ILE
90
n
34
ILE
90
A
ILE
91
n
35
ILE
91
A
SER
92
n
36
SER
92
A
GLN
93
n
37
GLN
93
A
GLU
94
n
38
GLU
94
A
THR
95
n
39
THR
95
A
ALA
96
n
40
ALA
96
A
ASP
97
n
41
ASP
97
A
CYS
98
n
42
CYS
98
A
THR
99
n
43
THR
99
A
VAL
100
n
44
VAL
100
A
LYS
101
n
45
LYS
101
A
ALA
102
n
46
ALA
102
A
VAL
103
n
47
VAL
103
A
LEU
104
n
48
LEU
104
A
GLN
105
n
49
GLN
105
A
LEU
106
n
50
LEU
106
A
LEU
107
n
51
LEU
107
A
SER
108
n
52
SER
108
A
ALA
109
n
53
ALA
109
A
HIS
110
n
54
HIS
110
A
ASN
111
n
55
ASN
111
A
VAL
112
n
56
VAL
112
A
THR
113
n
57
THR
113
A
GLU
114
n
58
GLU
114
A
LEU
115
n
59
LEU
115
A
GLN
116
n
60
GLN
116
A
THR
117
n
61
THR
117
A
ASP
118
n
62
ASP
118
A
ASN
119
n
63
ASN
119
A
GLY
120
n
64
GLY
120
A
PRO
121
n
65
PRO
121
A
ASN
122
n
66
ASN
122
A
PHE
123
n
67
PHE
123
A
LYS
124
n
68
LYS
124
A
ASN
125
n
69
ASN
125
A
GLN
126
n
70
GLN
126
A
LYS
127
n
71
LYS
127
A
MET
128
n
72
MET
128
A
GLU
129
n
73
GLU
129
A
GLY
130
n
74
GLY
130
A
VAL
131
n
75
VAL
131
A
LEU
132
n
76
LEU
132
A
ASN
133
n
77
ASN
133
A
TYR
134
n
78
TYR
134
A
MET
135
n
79
MET
135
A
GLY
136
n
80
GLY
136
A
VAL
137
n
81
VAL
137
A
LYS
138
n
82
LYS
138
A
HIS
139
n
83
HIS
139
A
LYS
140
n
84
LYS
140
A
PHE
141
n
85
PHE
141
A
GLY
142
n
86
GLY
142
A
ILE
143
n
87
ILE
143
A
PRO
144
n
88
PRO
144
A
GLY
145
n
89
GLY
145
A
ASN
146
n
90
ASN
146
A
PRO
147
n
91
PRO
147
A
GLN
148
n
92
GLN
148
A
SER
149
n
93
SER
149
A
GLN
150
n
94
GLN
150
A
ALA
151
n
95
ALA
151
A
LEU
152
n
96
LEU
152
A
VAL
153
n
97
VAL
153
A
GLU
154
n
98
GLU
154
A
ASN
155
n
99
ASN
155
A
VAL
156
n
100
VAL
156
A
ASN
157
n
101
ASN
157
A
HIS
158
n
102
HIS
158
A
THR
159
n
103
THR
159
A
LEU
160
n
104
LEU
160
A
LYS
161
n
105
LYS
161
A
VAL
162
n
106
VAL
162
A
TRP
163
n
107
TRP
163
A
ILE
164
n
108
ILE
164
A
GLN
165
n
109
GLN
165
A
LYS
166
n
110
LYS
166
A
PHE
167
n
111
PHE
167
A
LEU
168
n
112
LEU
168
A
PRO
169
n
113
PRO
169
A
GLU
170
n
114
GLU
170
A
THR
171
n
115
THR
171
A
THR
172
n
116
THR
172
A
SER
173
n
117
SER
173
A
LEU
174
n
118
LEU
174
A
ASP
175
n
119
ASP
175
A
ASN
176
n
120
ASN
176
A
ALA
177
n
121
ALA
177
A
LEU
178
n
122
LEU
178
A
SER
179
n
123
SER
179
A
LEU
180
n
124
LEU
180
A
ALA
181
n
125
ALA
181
A
VAL
182
n
126
VAL
182
A
HIS
183
n
127
HIS
183
A
SER
184
n
128
SER
184
A
LEU
185
n
129
LEU
185
A
ASN
186
n
130
ASN
186
A
LYS
187
n
131
LYS
187
A
LYS
188
n
132
LYS
188
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLN
89
A
O
GLN
33
A
N
LEU
76
A
N
LEU
20
A
O
ILE
75
A
O
ILE
19
A
N
THR
68
A
N
THR
12
A
N
TRP
63
A
N
TRP
7
A
O
GLN
116
A
O
GLN
60
A
N
LEU
115
A
N
LEU
59
A
O
LYS
138
A
O
LYS
82
1
A
GLY
57
A
GLY
1
1
Y
1
A
SER
58
A
SER
2
1
Y
1
A
HIS
59
A
HIS
3
1
Y
1
A
A
NE2
O
GLN
HOH
148
325
1.48
1
A
A
CB
O
MET
HOH
60
320
1.83
1
A
A
CB
O
ASN
HOH
122
344
2.11
1
A
A
O
O
HOH
HOH
272
304
2.11
1
A
A
O
O
HOH
HOH
379
380
2.18
1
A
A
C
O
LYS
HOH
188
229
1.46
1_555
1_455
1
A
A
O
O
HOH
HOH
250
370
1.88
1_555
1_655
1
A
A
O
O
HOH
HOH
262
360
2.07
1_555
1_655
17.061
0.17
0.00
0.05
0.07
0.00
-0.21
0.979
0.966
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.17650
0.13990
0.14173
1.08
33.32
2405
47812
45678
5.0
95.48
0.922
0.021
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.029
0.032
0.80
0.80
1.20
PDB ENTRY 3f9k
MAXIMUM LIKELIHOOD
MASK
0.1304
1.08
33.32
186
1195
0
0
1009
0.020
0.020
1030
1.942
1.931
1397
5.609
5.000
128
38.130
26.667
45
12.373
15.000
184
0.121
0.200
161
0.013
0.021
758
8.439
3.000
1030
43.451
5.000
40
17.379
5.000
1155
0.273
0.226
1.107
158
3006
20
87.28
1.08
33.32
4MQ3
48083
47812
-3
-3
0.03
0.03
1
15.94
3.41
95.6
1.08
1.135
2.59
1
90.3
data collection
MxCuBE
phasing
BALBES
refinement
REFMAC
5.6.0117
data reduction
XDS
data scaling
XDS
The 1.1 Angstrom Structure of Catalytic Core Domain of FIV Integrase
1
N
N
2
N
N
A
THR
95
A
THR
39
HELX_P
A
HIS
110
A
HIS
54
1
1
16
A
ASN
125
A
ASN
69
HELX_P
A
GLY
136
A
GLY
80
1
2
12
A
GLN
150
A
GLN
94
HELX_P
A
LEU
168
A
LEU
112
1
3
19
A
PRO
169
A
PRO
113
HELX_P
A
THR
171
A
THR
115
5
4
3
A
SER
173
A
SER
117
HELX_P
A
LYS
187
A
LYS
131
1
5
15
VIRAL PROTEIN
alpha beta, Ribonuclease-H like motif, Nucleotidyltransferase, VIRAL PROTEIN
POL_FIVPE
UNP
1
904
P16088
GIWQMDCTHFDGKIILVGIHVESGYIWAQIISQETADCTVKAVLQLLSAHNVTELQTDNGPNFKNQKMEGVLNYMGVKHK
FGIPGNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAVHSLNFK
904
1031
4MQ3
61
188
P16088
A
1
5
132
1
expression tag
GLY
57
4MQ3
A
P16088
UNP
1
1
expression tag
SER
58
4MQ3
A
P16088
UNP
2
1
expression tag
HIS
59
4MQ3
A
P16088
UNP
3
1
expression tag
MET
60
4MQ3
A
P16088
UNP
4
1
PHE
engineered mutation
LYS
187
4MQ3
A
P16088
UNP
1030
131
5
anti-parallel
anti-parallel
parallel
parallel
A
ILE
86
A
ILE
30
A
ILE
91
A
ILE
35
A
LYS
73
A
LYS
17
A
HIS
80
A
HIS
24
A
ILE
62
A
ILE
6
A
PHE
70
A
PHE
14
A
GLU
114
A
GLU
58
A
ASP
118
A
ASP
62
A
LYS
138
A
LYS
82
A
GLY
142
A
GLY
86
4
P 1 21 1