0.032462
0.000000
0.017461
-0.000000
0.012251
0.000000
0.000000
-0.000000
0.035091
0.000000
0.000000
0.000000
Liu, L.K.
Finzel, B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.000
118.280
90.000
30.805
81.626
32.358
C9 H11 N
133.190
1,2,3,4-tetrahydroisoquinoline
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O S
78.133
DIMETHYL SULFOXIDE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
N
9
N
C
N
10
N
N
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
N
N
23
S
C
N
24
N
C
N
25
N
O
N
26
N
C
N
27
N
O
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
N
N
36
S
C
N
37
N
C
N
38
N
O
N
39
N
C
N
40
N
C
N
41
N
C
N
42
N
N
N
43
N
C
N
44
N
N
N
45
N
N
N
46
N
O
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
N
N
63
S
C
N
64
N
C
N
65
N
O
N
66
N
C
N
67
N
C
N
68
N
O
N
69
N
N
N
70
N
O
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
S
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
O
N
86
N
O
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
R
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
S
N
101
N
O
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
S
N
110
N
O
N
111
N
C
N
112
N
C
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
S
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
N
N
140
S
C
N
141
N
C
N
142
N
O
N
143
N
C
N
144
N
C
N
145
N
C
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
N
C
N
160
N
C
N
161
N
O
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
O
N
172
N
C
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
N
C
Y
187
N
C
Y
188
N
N
Y
189
N
C
Y
190
N
C
Y
191
N
N
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
S
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
C
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
N
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
N
N
276
S
C
N
277
N
C
N
278
N
O
N
279
N
C
N
280
N
C
N
281
N
S
N
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
Y
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
N
N
319
S
C
N
320
N
C
N
321
N
O
N
322
N
C
N
323
N
C
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
O
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
S
N
350
N
O
N
351
N
O
N
352
N
O
N
353
N
O
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
N
382
N
O
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
N
400
N
C
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
Y
1
N
doub
Y
2
N
sing
Y
3
N
sing
Y
4
N
doub
Y
5
N
doub
Y
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
doub
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
doub
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
doub
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
Y
184
N
sing
Y
185
N
doub
Y
186
N
doub
N
187
N
sing
Y
188
N
sing
N
189
N
sing
Y
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
doub
Y
293
N
sing
Y
294
N
sing
N
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
doub
N
299
N
sing
Y
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
doub
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
57
2714
2725
10.1021/jm5000276
24606063
Fragment-Based Identification of an Inducible Binding Site on Cell Surface Receptor CD44 for the Design of Protein-Carbohydrate Interaction Inhibitors.
2014
US
Nat.Struct.Mol.Biol.
1545-9993
14
234
239
10.1038/nsmb1201
17293874
Structures of the Cd44-hyaluronan complex provide insight into a fundamental carbohydrate-protein interaction.
2007
10.2210/pdb4mrf/pdb
pdb_00004mrf
100
1
PIXEL
2012-11-17
DECTRIS PILATUS 6M
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.000
1.0
17-ID
APS
1.000
SYNCHROTRON
APS BEAMLINE 17-ID
16724.604
CD44 antigen
HYALURONAN BINDING DOMAIN, RESIDUES 23-171
1
man
polymer
78.133
DIMETHYL SULFOXIDE
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
133.190
1,2,3,4-tetrahydroisoquinoline
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
60
nat
water
Extracellular matrix receptor III, ECMR-III, GP90 lymphocyte homing/adhesion receptor, HUTCH-I, Hermes antigen, Hyaluronate receptor, Lymphocyte antigen 24, Ly-24, Phagocytic glycoprotein 1, PGP-1, Phagocytic glycoprotein I, PGP-I
no
no
NQIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAFNSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAA
NHTGVYILVTSNTSHYDTYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDI
NQIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAFNSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAA
NHTGVYILVTSNTSHYDTYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
mouse
sample
Cd44, Cd44 Ly-24, Ly-24
10090
Mus musculus
469008
Escherichia coli
BL21(DE3)
plasmid
pMCSG7
1
2.14
42.58
VAPOR DIFFUSION, HANGING DROP
6.5
30% PEG MME 5000, 100 mM MES, 200 mM (NH4)2SO4, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
298
diffrn_detector
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Data collection
Database references
Derived calculations
Refinement description
1
0
2014-04-16
1
1
2018-04-18
1
2
2023-09-20
_diffrn_detector.detector
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-09-17
REL
REL
DMS
DIMETHYL SULFOXIDE
GOL
GLYCEROL
2CK
1,2,3,4-tetrahydroisoquinoline
SO4
SULFATE ION
HOH
water
2JCP
pdb entry 2JCP
PDB
experimental model
DMS
1
2
DMS
DMS
201
A
GOL
1
3
GOL
GOL
202
A
DRG
1
4
2CK
2CK
203
A
SO4
2
5
SO4
SO4
204
A
HOH
1
6
HOH
HOH
301
A
HOH
2
6
HOH
HOH
302
A
HOH
3
6
HOH
HOH
303
A
HOH
4
6
HOH
HOH
304
A
HOH
5
6
HOH
HOH
305
A
HOH
6
6
HOH
HOH
306
A
HOH
7
6
HOH
HOH
307
A
HOH
8
6
HOH
HOH
308
A
HOH
9
6
HOH
HOH
309
A
HOH
10
6
HOH
HOH
310
A
HOH
11
6
HOH
HOH
311
A
HOH
12
6
HOH
HOH
312
A
HOH
13
6
HOH
HOH
313
A
HOH
14
6
HOH
HOH
314
A
HOH
15
6
HOH
HOH
315
A
HOH
16
6
HOH
HOH
316
A
HOH
17
6
HOH
HOH
317
A
HOH
18
6
HOH
HOH
318
A
HOH
19
6
HOH
HOH
319
A
HOH
20
6
HOH
HOH
320
A
HOH
21
6
HOH
HOH
321
A
HOH
22
6
HOH
HOH
322
A
HOH
23
6
HOH
HOH
323
A
HOH
24
6
HOH
HOH
324
A
HOH
25
6
HOH
HOH
325
A
HOH
26
6
HOH
HOH
326
A
HOH
27
6
HOH
HOH
327
A
HOH
28
6
HOH
HOH
328
A
HOH
29
6
HOH
HOH
329
A
HOH
30
6
HOH
HOH
330
A
HOH
31
6
HOH
HOH
331
A
HOH
32
6
HOH
HOH
332
A
HOH
33
6
HOH
HOH
333
A
HOH
34
6
HOH
HOH
334
A
HOH
35
6
HOH
HOH
335
A
HOH
36
6
HOH
HOH
336
A
HOH
37
6
HOH
HOH
337
A
HOH
38
6
HOH
HOH
338
A
HOH
39
6
HOH
HOH
339
A
HOH
40
6
HOH
HOH
340
A
HOH
41
6
HOH
HOH
341
A
HOH
42
6
HOH
HOH
342
A
HOH
43
6
HOH
HOH
343
A
HOH
44
6
HOH
HOH
344
A
HOH
45
6
HOH
HOH
345
A
HOH
46
6
HOH
HOH
346
A
HOH
47
6
HOH
HOH
347
A
HOH
48
6
HOH
HOH
348
A
HOH
49
6
HOH
HOH
349
A
HOH
50
6
HOH
HOH
350
A
HOH
51
6
HOH
HOH
351
A
HOH
52
6
HOH
HOH
352
A
HOH
53
6
HOH
HOH
353
A
HOH
54
6
HOH
HOH
354
A
HOH
55
6
HOH
HOH
355
A
HOH
56
6
HOH
HOH
356
A
HOH
57
6
HOH
HOH
357
A
HOH
58
6
HOH
HOH
358
A
HOH
59
6
HOH
HOH
359
A
HOH
60
6
HOH
HOH
360
A
32.190
2.500
2.500
40.810
40.810
Phaser MODE: MR_AUTO
ASN
24
n
1
ASN
24
A
GLN
25
n
2
GLN
25
A
ILE
26
n
3
ILE
26
A
ASP
27
n
4
ASP
27
A
LEU
28
n
5
LEU
28
A
ASN
29
n
6
ASN
29
A
VAL
30
n
7
VAL
30
A
THR
31
n
8
THR
31
A
CYS
32
n
9
CYS
32
A
ARG
33
n
10
ARG
33
A
TYR
34
n
11
TYR
34
A
ALA
35
n
12
ALA
35
A
GLY
36
n
13
GLY
36
A
VAL
37
n
14
VAL
37
A
PHE
38
n
15
PHE
38
A
HIS
39
n
16
HIS
39
A
VAL
40
n
17
VAL
40
A
GLU
41
n
18
GLU
41
A
LYS
42
n
19
LYS
42
A
ASN
43
n
20
ASN
43
A
GLY
44
n
21
GLY
44
A
ARG
45
n
22
ARG
45
A
TYR
46
n
23
TYR
46
A
SER
47
n
24
SER
47
A
ILE
48
n
25
ILE
48
A
SER
49
n
26
SER
49
A
ARG
50
n
27
ARG
50
A
THR
51
n
28
THR
51
A
GLU
52
n
29
GLU
52
A
ALA
53
n
30
ALA
53
A
ALA
54
n
31
ALA
54
A
ASP
55
n
32
ASP
55
A
LEU
56
n
33
LEU
56
A
CYS
57
n
34
CYS
57
A
GLN
58
n
35
GLN
58
A
ALA
59
n
36
ALA
59
A
PHE
60
n
37
PHE
60
A
ASN
61
n
38
ASN
61
A
SER
62
n
39
SER
62
A
THR
63
n
40
THR
63
A
LEU
64
n
41
LEU
64
A
PRO
65
n
42
PRO
65
A
THR
66
n
43
THR
66
A
MET
67
n
44
MET
67
A
ASP
68
n
45
ASP
68
A
GLN
69
n
46
GLN
69
A
MET
70
n
47
MET
70
A
LYS
71
n
48
LYS
71
A
LEU
72
n
49
LEU
72
A
ALA
73
n
50
ALA
73
A
LEU
74
n
51
LEU
74
A
SER
75
n
52
SER
75
A
LYS
76
n
53
LYS
76
A
GLY
77
n
54
GLY
77
A
PHE
78
n
55
PHE
78
A
GLU
79
n
56
GLU
79
A
THR
80
n
57
THR
80
A
CYS
81
n
58
CYS
81
A
ARG
82
n
59
ARG
82
A
TYR
83
n
60
TYR
83
A
GLY
84
n
61
GLY
84
A
PHE
85
n
62
PHE
85
A
ILE
86
n
63
ILE
86
A
GLU
87
n
64
GLU
87
A
GLY
88
n
65
GLY
88
A
ASN
89
n
66
ASN
89
A
VAL
90
n
67
VAL
90
A
VAL
91
n
68
VAL
91
A
ILE
92
n
69
ILE
92
A
PRO
93
n
70
PRO
93
A
ARG
94
n
71
ARG
94
A
ILE
95
n
72
ILE
95
A
HIS
96
n
73
HIS
96
A
PRO
97
n
74
PRO
97
A
ASN
98
n
75
ASN
98
A
ALA
99
n
76
ALA
99
A
ILE
100
n
77
ILE
100
A
CYS
101
n
78
CYS
101
A
ALA
102
n
79
ALA
102
A
ALA
103
n
80
ALA
103
A
ASN
104
n
81
ASN
104
A
HIS
105
n
82
HIS
105
A
THR
106
n
83
THR
106
A
GLY
107
n
84
GLY
107
A
VAL
108
n
85
VAL
108
A
TYR
109
n
86
TYR
109
A
ILE
110
n
87
ILE
110
A
LEU
111
n
88
LEU
111
A
VAL
112
n
89
VAL
112
A
THR
113
n
90
THR
113
A
SER
114
n
91
SER
114
A
ASN
115
n
92
ASN
115
A
THR
116
n
93
THR
116
A
SER
117
n
94
SER
117
A
HIS
118
n
95
HIS
118
A
TYR
119
n
96
TYR
119
A
ASP
120
n
97
ASP
120
A
THR
121
n
98
THR
121
A
TYR
122
n
99
TYR
122
A
CYS
123
n
100
CYS
123
A
PHE
124
n
101
PHE
124
A
ASN
125
n
102
ASN
125
A
ALA
126
n
103
ALA
126
A
SER
127
n
104
SER
127
A
ALA
128
n
105
ALA
128
A
PRO
129
n
106
PRO
129
A
PRO
130
n
107
PRO
130
A
GLU
131
n
108
GLU
131
A
GLU
132
n
109
GLU
132
A
ASP
133
n
110
ASP
133
A
CYS
134
n
111
CYS
134
A
THR
135
n
112
THR
135
A
SER
136
n
113
SER
136
A
VAL
137
n
114
VAL
137
A
THR
138
n
115
THR
138
A
ASP
139
n
116
ASP
139
A
LEU
140
n
117
LEU
140
A
PRO
141
n
118
PRO
141
A
ASN
142
n
119
ASN
142
A
SER
143
n
120
SER
143
A
PHE
144
n
121
PHE
144
A
ASP
145
n
122
ASP
145
A
GLY
146
n
123
GLY
146
A
PRO
147
n
124
PRO
147
A
VAL
148
n
125
VAL
148
A
THR
149
n
126
THR
149
A
ILE
150
n
127
ILE
150
A
THR
151
n
128
THR
151
A
ILE
152
n
129
ILE
152
A
VAL
153
n
130
VAL
153
A
ASN
154
n
131
ASN
154
A
ARG
155
n
132
ARG
155
A
ASP
156
n
133
ASP
156
A
GLY
157
n
134
GLY
157
A
THR
158
n
135
THR
158
A
ARG
159
n
136
ARG
159
A
TYR
160
n
137
TYR
160
A
SER
161
n
138
SER
161
A
LYS
162
n
139
LYS
162
A
LYS
163
n
140
LYS
163
A
GLY
164
n
141
GLY
164
A
GLU
165
n
142
GLU
165
A
TYR
166
n
143
TYR
166
A
ARG
167
n
144
ARG
167
A
THR
168
n
145
THR
168
A
HIS
169
n
146
HIS
169
A
GLN
170
n
147
GLN
170
A
GLU
171
n
148
GLU
171
A
ASP
172
n
149
ASP
172
A
ILE
173
n
150
ILE
173
A
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLY
107
A
O
GLY
84
A
N
ARG
94
A
N
ARG
71
A
O
VAL
91
A
O
VAL
68
A
N
GLY
84
A
N
GLY
61
A
N
PHE
85
A
N
PHE
62
A
O
TYR
122
A
O
TYR
99
A
O
THR
121
A
O
THR
98
A
N
VAL
40
A
N
VAL
17
A
O
GLU
41
A
O
GLU
18
A
N
ASN
29
A
N
ASN
6
A
N
LEU
28
A
N
LEU
5
A
O
THR
151
A
O
THR
128
A
N
ILE
150
A
N
ILE
127
A
O
LYS
162
A
O
LYS
139
A
N
ARG
33
A
N
ARG
10
A
O
ASP
133
A
O
ASP
110
1
3.39
0.50
120.30
123.69
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
50
50
50
A
A
A
N
1
-3.83
0.50
120.30
116.47
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
50
50
50
A
A
A
N
1
3.26
0.50
120.30
123.56
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
159
159
159
N
1
-6.24
0.50
120.30
114.06
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
159
159
159
N
1
A
SER
47
-155.25
15.24
1
A
GLU
131
-119.43
-133.99
1
A
LEU
140
-119.07
78.99
46.710
13.8573
2.770
-0.6700
0.0000
-0.5500
0.4600
0.0000
-0.3000
0.9520
0.9210
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
0.2150
0.1801
0.1819
1.5500
40.8
1028
20133
5.1000
98.7500
0.2215
0.1864
1.000
0.500
0.8846
1.3850
0.0520
0.0886
0.0898
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.0890
0.0900
0.8000
0.8000
1.4000
pdb entry 2JCP
MAXIMUM LIKELIHOOD
MASK
1.5500
40.8
60
1256
25
0
1171
0.016
0.021
1304
1.523
1.952
1786
7.020
5.000
167
36.266
23.810
63
11.870
15.000
203
17.972
15.000
10
0.109
0.200
196
0.008
0.021
1026
1.014
1.500
802
1.727
2.000
1320
2.711
3.000
502
4.373
4.500
466
0.2160
0.1790
1.5900
59
1252
1311
1252
20
92.0600
21.5
1.55
40.8
4MRF
20312
20192
0.031
0.042
1
22.1
3.2
98.8
0.085
1.550
1.630
8.800
7199
2840
0.085
1
2.500
95.500
0.074
1.630
1.730
9.800
9253
2783
0.074
1
3.300
99.900
0.062
1.730
1.850
11.500
8586
2629
0.062
1
3.300
99.600
0.045
1.850
2.000
15.500
8266
2483
0.045
1
3.300
99.500
0.040
2.000
2.190
17.200
7226
2252
0.040
1
3.200
99.500
0.033
2.190
2.450
20.300
6577
2024
0.033
1
3.200
99.400
0.029
2.450
2.830
22.800
5895
1816
0.029
1
3.200
99.000
0.026
2.830
3.470
24.000
4990
1513
0.026
1
3.300
98.900
0.024
3.470
4.900
25.000
3730
1187
0.024
1
3.100
98.600
0.024
4.900
40.813
25.800
2156
665
0.024
1
3.200
98.800
data scaling
Phil R. Evans
pre@mrc-lmb.cam.ac.uk
2010/01/06
Fortran_77
http://www.ccp4.ac.uk/dist/html/scala.html
SCALA
other
3.3.16
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
Wed Jun 16 18:01:28 2010
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
2.1.4
refinement
Garib N. Murshudov
garib@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/refmac5.html
REFMAC
program
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
JDirector
data reduction
XDS
Crystal structure of the murine cd44 hyaluronan binding domain complex with a small molecule
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
SER
49
A
SER
26
HELX_P
A
PHE
60
A
PHE
37
1
1
12
A
THR
66
A
THR
43
HELX_P
A
LYS
76
A
LYS
53
1
2
11
A
CYS
101
A
CYS
78
HELX_P
A
HIS
105
A
HIS
82
5
3
5
A
HIS
169
A
HIS
146
HELX_P
A
ILE
173
A
ILE
150
5
4
5
disulf
2.067
A
CYS
32
A
SG
CYS
9
1_555
A
CYS
134
A
SG
CYS
111
1_555
disulf
2.123
A
CYS
57
A
SG
CYS
34
1_555
A
CYS
123
A
SG
CYS
100
1_555
disulf
2.060
A
CYS
81
A
SG
CYS
58
1_555
A
CYS
101
A
SG
CYS
78
1_555
Cell adhesion/inhibitor
Link module, Cell receptor, Hyaluronan binding, Cell surface, Cell adhesion-inhibitor complex
CD44_MOUSE
UNP
1
23
P15379
QIDLNVTCRYAGVFHVEKNGRYSISRTEAADLCQAFNSTLPTMDQMKLALSKGFETCRYGFIEGNVVIPRIHPNAICAAN
HTGVYILVTSNTSHYDTYCFNASAPPEEDCTSVTDLPNSFDGPVTITIVNRDGTRYSKKGEYRTHQEDI
23
171
4MRF
25
173
P15379
A
1
2
150
1
expression tag
ASN
24
4MRF
A
P15379
UNP
1
8
2
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLY
107
A
GLY
84
A
ILE
110
A
ILE
87
A
VAL
90
A
VAL
67
A
ARG
94
A
ARG
71
A
GLY
84
A
GLY
61
A
PHE
85
A
PHE
62
A
ASP
120
A
ASP
97
A
PHE
124
A
PHE
101
A
VAL
37
A
VAL
14
A
LYS
42
A
LYS
19
A
GLN
25
A
GLN
2
A
VAL
30
A
VAL
7
A
PHE
144
A
PHE
121
A
ASN
154
A
ASN
131
A
ARG
159
A
ARG
136
A
GLU
165
A
GLU
142
A
ARG
33
A
ARG
10
A
TYR
34
A
TYR
11
A
GLU
132
A
GLU
109
A
ASP
133
A
ASP
110
BINDING SITE FOR RESIDUE DMS A 201
A
DMS
201
Software
8
BINDING SITE FOR RESIDUE GOL A 202
A
GOL
202
Software
9
BINDING SITE FOR RESIDUE 2CK A 203
A
2CK
203
Software
7
BINDING SITE FOR RESIDUE SO4 A 204
A
SO4
204
Software
6
A
CYS
32
A
CYS
9
8
1_555
A
ASN
89
A
ASN
66
8
1_554
A
CYS
134
A
CYS
111
8
1_555
A
SER
136
A
SER
113
8
1_555
A
ARG
155
A
ARG
132
8
1_555
A
ASP
156
A
ASP
133
8
1_555
A
HOH
321
F
HOH
8
1_555
A
HOH
336
F
HOH
8
1_554
A
TYR
46
A
TYR
23
9
1_555
A
CYS
81
A
CYS
58
9
1_555
A
TYR
83
A
TYR
60
9
1_555
A
ILE
92
A
ILE
69
9
1_555
A
ILE
100
A
ILE
77
9
1_555
A
CYS
101
A
CYS
78
9
1_555
A
ALA
102
A
ALA
79
9
1_555
A
GLU
131
A
GLU
108
9
1_656
A
HOH
359
F
HOH
9
1_656
A
ASN
29
A
ASN
6
7
1_555
A
VAL
30
A
VAL
7
7
1_555
A
GLU
41
A
GLU
18
7
1_555
A
ASP
68
A
ASP
45
7
1_655
A
VAL
153
A
VAL
130
7
1_555
A
ASN
154
A
ASN
131
7
1_555
A
ARG
155
A
ARG
132
7
1_555
A
ARG
33
A
ARG
10
6
1_555
A
PHE
38
A
PHE
15
6
1_555
A
PHE
60
A
PHE
37
6
1_555
A
SER
62
A
SER
39
6
1_555
A
ASN
125
A
ASN
102
6
1_555
A
VAL
137
A
VAL
114
6
1_555
4
P 1 21 1