data_4MS5 # _entry.id 4MS5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4MS5 pdb_00004ms5 10.2210/pdb4ms5/pdb NDB NA2735 ? ? RCSB RCSB082298 ? ? WWPDB D_1000082298 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4MS5 _pdbx_database_status.recvd_initial_deposition_date 2013-09-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hall, J.P.' 1 'Cardin, C.J.' 2 # _citation.id primary _citation.title 'The effects of disubstitution on the binding of ruthenium complexes to DNA' _citation.journal_abbrev 'Thesis, University of Reading' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2014 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Hall, J.P.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4MS5 _cell.length_a 47.610 _cell.length_b 47.610 _cell.length_c 34.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4MS5 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn DNA 3045.992 1 ? ? ? ? 2 non-polymer syn 'BARIUM ION' 137.327 1 ? ? ? ? 3 non-polymer syn "(11,12-difluorodipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" 783.713 1 ? ? ? ? 4 water nat water 18.015 15 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DG)(DA)(DT)(DC)(DC)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGGATCCGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DA n 1 6 DT n 1 7 DC n 1 8 DC n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'DNA synthesised by ATDBio' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4MS5 _struct_ref.pdbx_db_accession 4MS5 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code CCGGATCCGG _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4MS5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4MS5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 RKF non-polymer . "(11,12-difluorodipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" ? 'C38 H20 F2 N12 Ru 2' 783.713 # _exptl.entry_id 4MS5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.22 _exptl_crystal.density_percent_sol 61.78 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.3 _exptl_crystal_grow.pdbx_details ;1ul 1mM (CCGGATCCGG)2, 1ul 2mM Ru(TAP)2(dppz-11,12-(F)2]Cl2, 6ul of 40mM Na-cacodylate, 12mM spermine, 20mM BaCl2, 80mM KCl, 10% 2-methyl-2,4-pentanediol. Equilibriated against 1ml 35% 2-methyl-2,4-pentanediol, pH 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-12-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'dual Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8266 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8266 # _reflns.entry_id 4MS5 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 34.60 _reflns.d_resolution_high 2.23 _reflns.number_obs 2136 _reflns.number_all 2136 _reflns.percent_possible_obs 99 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.23 _reflns_shell.d_res_low 2.29 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4MS5 _refine.ls_number_reflns_obs 2016 _refine.ls_number_reflns_all 2016 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.01 _refine.ls_d_res_high 2.23 _refine.ls_percent_reflns_obs 98.05 _refine.ls_R_factor_obs 0.22011 _refine.ls_R_factor_all 0.22011 _refine.ls_R_factor_R_work 0.21882 _refine.ls_R_factor_R_free 0.24525 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5 _refine.ls_number_reflns_R_free 95 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.941 _refine.B_iso_mean 36.835 _refine.aniso_B[1][1] 0.13 _refine.aniso_B[2][2] 0.13 _refine.aniso_B[3][3] -0.26 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3QRN' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.269 _refine.pdbx_overall_ESU_R_Free 0.205 _refine.overall_SU_ML 0.184 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 8.526 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 15 _refine_hist.number_atoms_total 271 _refine_hist.d_res_high 2.23 _refine_hist.d_res_low 28.01 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.010 0.013 ? 292 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.092 0.020 ? 132 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.433 1.610 ? 460 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.863 3.000 ? 304 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.107 0.200 ? 30 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.019 0.020 ? 176 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.009 0.020 ? 74 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it 3.279 3.726 ? 292 ? 'X-RAY DIFFRACTION' r_scbond_other 3.273 3.723 ? 293 ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other 4.728 5.557 ? 461 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 6.030 39.900 ? 693 ? 'X-RAY DIFFRACTION' r_long_range_B_other 6.031 39.902 ? 692 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.231 _refine_ls_shell.d_res_low 2.289 _refine_ls_shell.number_reflns_R_work 146 _refine_ls_shell.R_factor_R_work 0.356 _refine_ls_shell.percent_reflns_obs 99.36 _refine_ls_shell.R_factor_R_free 0.388 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 10 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4MS5 _struct.title 'Lambda-[Ru(TAP)2(dppz-11,12-(F)2)]2+ bound to CCGGATCCGG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4MS5 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Intercalation, semi-intercalation, DNA, ruthenium' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 4 O6 ? ? ? 1_555 B BA . BA ? ? A DG 4 A BA 101 1_555 ? ? ? ? ? ? ? 3.057 ? ? hydrog1 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 10 O6 ? ? A DC 1 A DG 10 8_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 3 A DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 3 A DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 3 A DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 4 A DC 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 4 A DC 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 4 A DC 7 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 6 N3 ? ? A DA 5 A DT 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 6 O4 ? ? A DA 5 A DT 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 6 A DA 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 6 A DA 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 7 A DG 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 7 A DG 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 7 A DG 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 10 A DC 1 8_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BA 101 ? 2 'BINDING SITE FOR RESIDUE BA A 101' AC2 Software A RKF 102 ? 10 'BINDING SITE FOR RESIDUE RKF A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DG A 3 ? DG A 3 . ? 1_555 ? 2 AC1 2 DG A 4 ? DG A 4 . ? 1_555 ? 3 AC2 10 DC A 1 ? DC A 1 . ? 8_555 ? 4 AC2 10 DC A 2 ? DC A 2 . ? 8_555 ? 5 AC2 10 DG A 3 ? DG A 3 . ? 6_445 ? 6 AC2 10 DG A 3 ? DG A 3 . ? 8_555 ? 7 AC2 10 DG A 4 ? DG A 4 . ? 6_445 ? 8 AC2 10 DC A 7 ? DC A 7 . ? 3_444 ? 9 AC2 10 DC A 8 ? DC A 8 . ? 3_444 ? 10 AC2 10 DG A 9 ? DG A 9 . ? 1_555 ? 11 AC2 10 DG A 10 ? DG A 10 . ? 1_555 ? 12 AC2 10 HOH D . ? HOH A 215 . ? 4_545 ? # _database_PDB_matrix.entry_id 4MS5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4MS5 _atom_sites.fract_transf_matrix[1][1] 0.021004 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021004 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028902 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C F N O P RU # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 7.068 -0.239 21.175 0.70 52.72 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 8.087 -0.983 21.880 0.70 53.10 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 9.373 -0.983 21.080 0.70 52.18 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 10.574 -0.676 21.826 0.70 49.48 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 9.684 -2.173 20.173 0.70 53.25 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 9.165 -1.948 18.858 0.70 52.47 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 11.199 -2.250 20.172 0.70 51.25 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 11.641 -1.525 21.434 0.70 48.67 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 11.943 -2.426 22.554 0.70 47.82 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 13.270 -2.567 22.967 0.70 47.36 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 14.148 -1.901 22.401 0.70 42.75 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 13.558 -3.401 23.992 0.70 51.86 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 12.577 -4.076 24.600 0.70 53.35 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 12.905 -4.883 25.612 0.70 54.38 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 11.217 -3.955 24.196 0.70 50.24 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 10.948 -3.132 23.174 0.70 50.75 ? 1 DC A C6 1 ATOM 17 P P . DC A 1 2 ? 9.621 -0.677 18.022 0.70 45.39 ? 2 DC A P 1 ATOM 18 O OP1 . DC A 1 2 ? 10.421 0.215 18.908 0.70 46.23 ? 2 DC A OP1 1 ATOM 19 O OP2 . DC A 1 2 ? 8.436 -0.152 17.309 0.70 50.60 ? 2 DC A OP2 1 ATOM 20 O "O5'" . DC A 1 2 ? 10.608 -1.311 16.957 1.00 45.64 ? 2 DC A "O5'" 1 ATOM 21 C "C5'" . DC A 1 2 ? 10.195 -1.709 15.637 1.00 40.07 ? 2 DC A "C5'" 1 ATOM 22 C "C4'" . DC A 1 2 ? 11.366 -1.553 14.696 1.00 37.98 ? 2 DC A "C4'" 1 ATOM 23 O "O4'" . DC A 1 2 ? 12.596 -1.801 15.407 1.00 38.08 ? 2 DC A "O4'" 1 ATOM 24 C "C3'" . DC A 1 2 ? 11.361 -2.523 13.528 1.00 38.37 ? 2 DC A "C3'" 1 ATOM 25 O "O3'" . DC A 1 2 ? 10.892 -1.817 12.379 1.00 35.43 ? 2 DC A "O3'" 1 ATOM 26 C "C2'" . DC A 1 2 ? 12.821 -2.905 13.348 1.00 38.05 ? 2 DC A "C2'" 1 ATOM 27 C "C1'" . DC A 1 2 ? 13.508 -2.584 14.653 1.00 35.06 ? 2 DC A "C1'" 1 ATOM 28 N N1 . DC A 1 2 ? 13.822 -3.773 15.448 1.00 34.13 ? 2 DC A N1 1 ATOM 29 C C2 . DC A 1 2 ? 15.107 -3.956 15.975 1.00 32.09 ? 2 DC A C2 1 ATOM 30 O O2 . DC A 1 2 ? 15.991 -3.123 15.724 1.00 33.04 ? 2 DC A O2 1 ATOM 31 N N3 . DC A 1 2 ? 15.361 -5.055 16.714 1.00 31.12 ? 2 DC A N3 1 ATOM 32 C C4 . DC A 1 2 ? 14.376 -5.910 16.994 1.00 30.95 ? 2 DC A C4 1 ATOM 33 N N4 . DC A 1 2 ? 14.664 -6.970 17.741 1.00 32.00 ? 2 DC A N4 1 ATOM 34 C C5 . DC A 1 2 ? 13.059 -5.733 16.496 1.00 32.70 ? 2 DC A C5 1 ATOM 35 C C6 . DC A 1 2 ? 12.831 -4.673 15.718 1.00 34.38 ? 2 DC A C6 1 ATOM 36 P P . DG A 1 3 ? 10.648 -2.593 11.029 1.00 35.75 ? 3 DG A P 1 ATOM 37 O OP1 . DG A 1 3 ? 9.748 -1.753 10.197 1.00 36.60 ? 3 DG A OP1 1 ATOM 38 O OP2 . DG A 1 3 ? 10.302 -4.001 11.361 1.00 32.02 ? 3 DG A OP2 1 ATOM 39 O "O5'" . DG A 1 3 ? 12.069 -2.595 10.323 1.00 31.02 ? 3 DG A "O5'" 1 ATOM 40 C "C5'" . DG A 1 3 ? 12.621 -1.378 9.861 1.00 32.50 ? 3 DG A "C5'" 1 ATOM 41 C "C4'" . DG A 1 3 ? 14.040 -1.630 9.420 1.00 33.71 ? 3 DG A "C4'" 1 ATOM 42 O "O4'" . DG A 1 3 ? 14.869 -2.009 10.539 1.00 35.76 ? 3 DG A "O4'" 1 ATOM 43 C "C3'" . DG A 1 3 ? 14.194 -2.756 8.408 1.00 34.58 ? 3 DG A "C3'" 1 ATOM 44 O "O3'" . DG A 1 3 ? 14.096 -2.152 7.122 1.00 33.72 ? 3 DG A "O3'" 1 ATOM 45 C "C2'" . DG A 1 3 ? 15.597 -3.270 8.677 1.00 33.46 ? 3 DG A "C2'" 1 ATOM 46 C "C1'" . DG A 1 3 ? 15.758 -3.065 10.171 1.00 32.63 ? 3 DG A "C1'" 1 ATOM 47 N N9 . DG A 1 3 ? 15.405 -4.218 10.985 1.00 30.87 ? 3 DG A N9 1 ATOM 48 C C8 . DG A 1 3 ? 14.243 -4.946 10.929 1.00 32.27 ? 3 DG A C8 1 ATOM 49 N N7 . DG A 1 3 ? 14.175 -5.873 11.846 1.00 31.99 ? 3 DG A N7 1 ATOM 50 C C5 . DG A 1 3 ? 15.352 -5.727 12.567 1.00 28.49 ? 3 DG A C5 1 ATOM 51 C C6 . DG A 1 3 ? 15.846 -6.458 13.670 1.00 29.16 ? 3 DG A C6 1 ATOM 52 O O6 . DG A 1 3 ? 15.320 -7.414 14.259 1.00 27.50 ? 3 DG A O6 1 ATOM 53 N N1 . DG A 1 3 ? 17.083 -5.979 14.088 1.00 29.99 ? 3 DG A N1 1 ATOM 54 C C2 . DG A 1 3 ? 17.759 -4.929 13.515 1.00 29.43 ? 3 DG A C2 1 ATOM 55 N N2 . DG A 1 3 ? 18.953 -4.624 14.047 1.00 29.87 ? 3 DG A N2 1 ATOM 56 N N3 . DG A 1 3 ? 17.315 -4.250 12.477 1.00 29.80 ? 3 DG A N3 1 ATOM 57 C C4 . DG A 1 3 ? 16.109 -4.692 12.064 1.00 30.75 ? 3 DG A C4 1 ATOM 58 P P . DG A 1 4 ? 13.482 -2.951 5.944 1.00 35.90 ? 4 DG A P 1 ATOM 59 O OP1 . DG A 1 4 ? 13.565 -2.100 4.739 1.00 33.65 ? 4 DG A OP1 1 ATOM 60 O OP2 . DG A 1 4 ? 12.211 -3.560 6.392 1.00 33.99 ? 4 DG A OP2 1 ATOM 61 O "O5'" . DG A 1 4 ? 14.490 -4.160 5.756 1.00 34.71 ? 4 DG A "O5'" 1 ATOM 62 C "C5'" . DG A 1 4 ? 15.715 -3.921 5.079 1.00 35.61 ? 4 DG A "C5'" 1 ATOM 63 C "C4'" . DG A 1 4 ? 16.437 -5.229 4.901 1.00 35.16 ? 4 DG A "C4'" 1 ATOM 64 O "O4'" . DG A 1 4 ? 16.446 -5.909 6.173 1.00 34.80 ? 4 DG A "O4'" 1 ATOM 65 C "C3'" . DG A 1 4 ? 15.770 -6.192 3.927 1.00 37.60 ? 4 DG A "C3'" 1 ATOM 66 O "O3'" . DG A 1 4 ? 16.844 -6.891 3.267 1.00 41.95 ? 4 DG A "O3'" 1 ATOM 67 C "C2'" . DG A 1 4 ? 14.960 -7.073 4.862 1.00 36.11 ? 4 DG A "C2'" 1 ATOM 68 C "C1'" . DG A 1 4 ? 15.933 -7.203 6.012 1.00 33.18 ? 4 DG A "C1'" 1 ATOM 69 N N9 . DG A 1 4 ? 15.371 -7.620 7.288 1.00 32.41 ? 4 DG A N9 1 ATOM 70 C C8 . DG A 1 4 ? 14.190 -7.203 7.843 1.00 33.02 ? 4 DG A C8 1 ATOM 71 N N7 . DG A 1 4 ? 13.945 -7.755 8.998 1.00 37.96 ? 4 DG A N7 1 ATOM 72 C C5 . DG A 1 4 ? 15.045 -8.565 9.229 1.00 33.30 ? 4 DG A C5 1 ATOM 73 C C6 . DG A 1 4 ? 15.342 -9.405 10.317 1.00 37.44 ? 4 DG A C6 1 ATOM 74 O O6 . DG A 1 4 ? 14.669 -9.614 11.333 1.00 42.79 ? 4 DG A O6 1 ATOM 75 N N1 . DG A 1 4 ? 16.565 -10.039 10.153 1.00 37.80 ? 4 DG A N1 1 ATOM 76 C C2 . DG A 1 4 ? 17.387 -9.895 9.070 1.00 32.34 ? 4 DG A C2 1 ATOM 77 N N2 . DG A 1 4 ? 18.520 -10.601 9.092 1.00 32.18 ? 4 DG A N2 1 ATOM 78 N N3 . DG A 1 4 ? 17.113 -9.124 8.039 1.00 34.39 ? 4 DG A N3 1 ATOM 79 C C4 . DG A 1 4 ? 15.934 -8.491 8.185 1.00 31.46 ? 4 DG A C4 1 ATOM 80 P P . DA A 1 5 ? 16.614 -7.673 1.881 1.00 47.16 ? 5 DA A P 1 ATOM 81 O OP1 . DA A 1 5 ? 17.266 -6.894 0.784 1.00 44.90 ? 5 DA A OP1 1 ATOM 82 O OP2 . DA A 1 5 ? 15.185 -8.091 1.806 1.00 43.66 ? 5 DA A OP2 1 ATOM 83 O "O5'" . DA A 1 5 ? 17.335 -9.069 2.109 1.00 37.90 ? 5 DA A "O5'" 1 ATOM 84 C "C5'" . DA A 1 5 ? 18.723 -9.148 2.374 1.00 40.44 ? 5 DA A "C5'" 1 ATOM 85 C "C4'" . DA A 1 5 ? 19.019 -10.572 2.757 1.00 40.14 ? 5 DA A "C4'" 1 ATOM 86 O "O4'" . DA A 1 5 ? 18.549 -10.797 4.100 1.00 37.33 ? 5 DA A "O4'" 1 ATOM 87 C "C3'" . DA A 1 5 ? 18.297 -11.585 1.873 1.00 43.36 ? 5 DA A "C3'" 1 ATOM 88 O "O3'" . DA A 1 5 ? 19.215 -12.596 1.491 1.00 57.53 ? 5 DA A "O3'" 1 ATOM 89 C "C2'" . DA A 1 5 ? 17.244 -12.199 2.772 1.00 40.69 ? 5 DA A "C2'" 1 ATOM 90 C "C1'" . DA A 1 5 ? 17.789 -11.987 4.167 1.00 36.52 ? 5 DA A "C1'" 1 ATOM 91 N N9 . DA A 1 5 ? 16.727 -11.767 5.142 1.00 32.22 ? 5 DA A N9 1 ATOM 92 C C8 . DA A 1 5 ? 15.716 -10.841 5.054 1.00 30.48 ? 5 DA A C8 1 ATOM 93 N N7 . DA A 1 5 ? 14.906 -10.847 6.083 1.00 29.98 ? 5 DA A N7 1 ATOM 94 C C5 . DA A 1 5 ? 15.431 -11.826 6.914 1.00 27.37 ? 5 DA A C5 1 ATOM 95 C C6 . DA A 1 5 ? 15.026 -12.318 8.156 1.00 28.16 ? 5 DA A C6 1 ATOM 96 N N6 . DA A 1 5 ? 13.955 -11.864 8.810 1.00 28.21 ? 5 DA A N6 1 ATOM 97 N N1 . DA A 1 5 ? 15.759 -13.311 8.713 1.00 27.91 ? 5 DA A N1 1 ATOM 98 C C2 . DA A 1 5 ? 16.836 -13.755 8.056 1.00 27.84 ? 5 DA A C2 1 ATOM 99 N N3 . DA A 1 5 ? 17.315 -13.372 6.876 1.00 29.94 ? 5 DA A N3 1 ATOM 100 C C4 . DA A 1 5 ? 16.549 -12.404 6.345 1.00 28.50 ? 5 DA A C4 1 ATOM 101 P P . DT A 1 6 ? 18.828 -13.609 0.347 1.00 63.23 ? 6 DT A P 1 ATOM 102 O OP1 . DT A 1 6 ? 20.083 -13.974 -0.357 1.00 64.67 ? 6 DT A OP1 1 ATOM 103 O OP2 . DT A 1 6 ? 17.668 -13.030 -0.390 1.00 57.07 ? 6 DT A OP2 1 ATOM 104 O "O5'" . DT A 1 6 ? 18.379 -14.899 1.156 1.00 52.76 ? 6 DT A "O5'" 1 ATOM 105 C "C5'" . DT A 1 6 ? 19.323 -15.612 1.959 1.00 50.91 ? 6 DT A "C5'" 1 ATOM 106 C "C4'" . DT A 1 6 ? 18.577 -16.572 2.856 1.00 52.48 ? 6 DT A "C4'" 1 ATOM 107 O "O4'" . DT A 1 6 ? 17.850 -15.849 3.861 1.00 49.59 ? 6 DT A "O4'" 1 ATOM 108 C "C3'" . DT A 1 6 ? 17.509 -17.400 2.153 1.00 54.96 ? 6 DT A "C3'" 1 ATOM 109 O "O3'" . DT A 1 6 ? 18.135 -18.537 1.539 1.00 62.13 ? 6 DT A "O3'" 1 ATOM 110 C "C2'" . DT A 1 6 ? 16.534 -17.731 3.274 1.00 50.68 ? 6 DT A "C2'" 1 ATOM 111 C "C1'" . DT A 1 6 ? 16.813 -16.687 4.354 1.00 46.31 ? 6 DT A "C1'" 1 ATOM 112 N N1 . DT A 1 6 ? 15.666 -15.832 4.689 1.00 38.35 ? 6 DT A N1 1 ATOM 113 C C2 . DT A 1 6 ? 15.001 -16.074 5.863 1.00 35.98 ? 6 DT A C2 1 ATOM 114 O O2 . DT A 1 6 ? 15.303 -16.975 6.624 1.00 34.05 ? 6 DT A O2 1 ATOM 115 N N3 . DT A 1 6 ? 13.941 -15.237 6.103 1.00 36.68 ? 6 DT A N3 1 ATOM 116 C C4 . DT A 1 6 ? 13.501 -14.194 5.303 1.00 37.96 ? 6 DT A C4 1 ATOM 117 O O4 . DT A 1 6 ? 12.530 -13.522 5.646 1.00 36.94 ? 6 DT A O4 1 ATOM 118 C C5 . DT A 1 6 ? 14.245 -13.998 4.085 1.00 38.08 ? 6 DT A C5 1 ATOM 119 C C7 . DT A 1 6 ? 13.828 -12.905 3.150 1.00 38.40 ? 6 DT A C7 1 ATOM 120 C C6 . DT A 1 6 ? 15.278 -14.815 3.841 1.00 39.03 ? 6 DT A C6 1 ATOM 121 P P . DC A 1 7 ? 17.421 -19.297 0.326 1.00 57.60 ? 7 DC A P 1 ATOM 122 O OP1 . DC A 1 7 ? 18.314 -20.394 -0.101 1.00 61.83 ? 7 DC A OP1 1 ATOM 123 O OP2 . DC A 1 7 ? 16.932 -18.289 -0.662 1.00 44.40 ? 7 DC A OP2 1 ATOM 124 O "O5'" . DC A 1 7 ? 16.237 -20.024 1.081 1.00 45.70 ? 7 DC A "O5'" 1 ATOM 125 C "C5'" . DC A 1 7 ? 16.541 -20.996 2.069 1.00 41.40 ? 7 DC A "C5'" 1 ATOM 126 C "C4'" . DC A 1 7 ? 15.227 -21.394 2.685 1.00 41.66 ? 7 DC A "C4'" 1 ATOM 127 O "O4'" . DC A 1 7 ? 14.780 -20.332 3.540 1.00 43.88 ? 7 DC A "O4'" 1 ATOM 128 C "C3'" . DC A 1 7 ? 14.093 -21.560 1.684 1.00 38.74 ? 7 DC A "C3'" 1 ATOM 129 O "O3'" . DC A 1 7 ? 14.154 -22.882 1.158 1.00 37.35 ? 7 DC A "O3'" 1 ATOM 130 C "C2'" . DC A 1 7 ? 12.866 -21.347 2.552 1.00 40.44 ? 7 DC A "C2'" 1 ATOM 131 C "C1'" . DC A 1 7 ? 13.374 -20.466 3.700 1.00 43.36 ? 7 DC A "C1'" 1 ATOM 132 N N1 . DC A 1 7 ? 12.793 -19.121 3.679 1.00 42.32 ? 7 DC A N1 1 ATOM 133 C C2 . DC A 1 7 ? 12.017 -18.701 4.755 1.00 41.42 ? 7 DC A C2 1 ATOM 134 O O2 . DC A 1 7 ? 11.881 -19.457 5.729 1.00 43.87 ? 7 DC A O2 1 ATOM 135 N N3 . DC A 1 7 ? 11.443 -17.480 4.714 1.00 39.55 ? 7 DC A N3 1 ATOM 136 C C4 . DC A 1 7 ? 11.615 -16.698 3.649 1.00 34.81 ? 7 DC A C4 1 ATOM 137 N N4 . DC A 1 7 ? 11.035 -15.500 3.655 1.00 37.48 ? 7 DC A N4 1 ATOM 138 C C5 . DC A 1 7 ? 12.396 -17.104 2.537 1.00 36.80 ? 7 DC A C5 1 ATOM 139 C C6 . DC A 1 7 ? 12.956 -18.315 2.589 1.00 39.54 ? 7 DC A C6 1 ATOM 140 P P . DC A 1 8 ? 13.662 -23.201 -0.297 1.00 33.98 ? 8 DC A P 1 ATOM 141 O OP1 . DC A 1 8 ? 14.049 -24.583 -0.597 1.00 37.50 ? 8 DC A OP1 1 ATOM 142 O OP2 . DC A 1 8 ? 14.027 -22.090 -1.196 1.00 32.94 ? 8 DC A OP2 1 ATOM 143 O "O5'" . DC A 1 8 ? 12.087 -23.191 -0.162 1.00 32.20 ? 8 DC A "O5'" 1 ATOM 144 C "C5'" . DC A 1 8 ? 11.398 -24.289 0.422 1.00 29.54 ? 8 DC A "C5'" 1 ATOM 145 C "C4'" . DC A 1 8 ? 9.919 -24.005 0.361 1.00 29.42 ? 8 DC A "C4'" 1 ATOM 146 O "O4'" . DC A 1 8 ? 9.593 -22.812 1.098 1.00 29.19 ? 8 DC A "O4'" 1 ATOM 147 C "C3'" . DC A 1 8 ? 9.369 -23.717 -1.022 1.00 29.27 ? 8 DC A "C3'" 1 ATOM 148 O "O3'" . DC A 1 8 ? 9.181 -24.962 -1.674 1.00 30.90 ? 8 DC A "O3'" 1 ATOM 149 C "C2'" . DC A 1 8 ? 8.061 -23.017 -0.696 1.00 28.42 ? 8 DC A "C2'" 1 ATOM 150 C "C1'" . DC A 1 8 ? 8.339 -22.310 0.629 1.00 27.47 ? 8 DC A "C1'" 1 ATOM 151 N N1 . DC A 1 8 ? 8.455 -20.848 0.612 1.00 27.80 ? 8 DC A N1 1 ATOM 152 C C2 . DC A 1 8 ? 7.560 -20.069 1.354 1.00 27.64 ? 8 DC A C2 1 ATOM 153 O O2 . DC A 1 8 ? 6.589 -20.617 1.899 1.00 32.69 ? 8 DC A O2 1 ATOM 154 N N3 . DC A 1 8 ? 7.753 -18.734 1.427 1.00 25.79 ? 8 DC A N3 1 ATOM 155 C C4 . DC A 1 8 ? 8.821 -18.184 0.849 1.00 24.78 ? 8 DC A C4 1 ATOM 156 N N4 . DC A 1 8 ? 8.968 -16.865 0.938 1.00 27.60 ? 8 DC A N4 1 ATOM 157 C C5 . DC A 1 8 ? 9.772 -18.959 0.128 1.00 26.57 ? 8 DC A C5 1 ATOM 158 C C6 . DC A 1 8 ? 9.567 -20.279 0.057 1.00 27.84 ? 8 DC A C6 1 ATOM 159 P P . DG A 1 9 ? 8.760 -24.997 -3.174 1.00 31.78 ? 9 DG A P 1 ATOM 160 O OP1 . DG A 1 9 ? 8.813 -26.396 -3.618 1.00 30.72 ? 9 DG A OP1 1 ATOM 161 O OP2 . DG A 1 9 ? 9.495 -23.913 -3.875 1.00 30.55 ? 9 DG A OP2 1 ATOM 162 O "O5'" . DG A 1 9 ? 7.225 -24.616 -3.137 1.00 33.09 ? 9 DG A "O5'" 1 ATOM 163 C "C5'" . DG A 1 9 ? 6.184 -25.580 -2.950 1.00 35.65 ? 9 DG A "C5'" 1 ATOM 164 C "C4'" . DG A 1 9 ? 4.885 -24.818 -2.904 1.00 37.49 ? 9 DG A "C4'" 1 ATOM 165 O "O4'" . DG A 1 9 ? 5.123 -23.686 -2.054 1.00 37.75 ? 9 DG A "O4'" 1 ATOM 166 C "C3'" . DG A 1 9 ? 4.497 -24.217 -4.248 1.00 42.69 ? 9 DG A "C3'" 1 ATOM 167 O "O3'" . DG A 1 9 ? 3.531 -25.020 -4.912 1.00 51.97 ? 9 DG A "O3'" 1 ATOM 168 C "C2'" . DG A 1 9 ? 3.837 -22.905 -3.878 1.00 43.64 ? 9 DG A "C2'" 1 ATOM 169 C "C1'" . DG A 1 9 ? 4.436 -22.535 -2.536 1.00 39.68 ? 9 DG A "C1'" 1 ATOM 170 N N9 . DG A 1 9 ? 5.365 -21.398 -2.557 1.00 35.60 ? 9 DG A N9 1 ATOM 171 C C8 . DG A 1 9 ? 6.533 -21.284 -3.271 1.00 32.24 ? 9 DG A C8 1 ATOM 172 N N7 . DG A 1 9 ? 7.147 -20.149 -3.071 1.00 31.35 ? 9 DG A N7 1 ATOM 173 C C5 . DG A 1 9 ? 6.314 -19.454 -2.204 1.00 32.40 ? 9 DG A C5 1 ATOM 174 C C6 . DG A 1 9 ? 6.425 -18.141 -1.671 1.00 32.92 ? 9 DG A C6 1 ATOM 175 O O6 . DG A 1 9 ? 7.321 -17.307 -1.853 1.00 35.37 ? 9 DG A O6 1 ATOM 176 N N1 . DG A 1 9 ? 5.363 -17.840 -0.826 1.00 30.38 ? 9 DG A N1 1 ATOM 177 C C2 . DG A 1 9 ? 4.310 -18.675 -0.557 1.00 32.71 ? 9 DG A C2 1 ATOM 178 N N2 . DG A 1 9 ? 3.376 -18.199 0.278 1.00 36.86 ? 9 DG A N2 1 ATOM 179 N N3 . DG A 1 9 ? 4.191 -19.897 -1.046 1.00 32.18 ? 9 DG A N3 1 ATOM 180 C C4 . DG A 1 9 ? 5.216 -20.215 -1.867 1.00 34.20 ? 9 DG A C4 1 ATOM 181 P P . DG A 1 10 ? 3.069 -24.646 -6.391 1.00 62.16 ? 10 DG A P 1 ATOM 182 O OP1 . DG A 1 10 ? 2.249 -25.776 -6.898 1.00 67.98 ? 10 DG A OP1 1 ATOM 183 O OP2 . DG A 1 10 ? 4.275 -24.208 -7.165 1.00 53.51 ? 10 DG A OP2 1 ATOM 184 O "O5'" . DG A 1 10 ? 2.053 -23.442 -6.133 1.00 62.64 ? 10 DG A "O5'" 1 ATOM 185 C "C5'" . DG A 1 10 ? 1.846 -22.410 -7.107 1.00 59.72 ? 10 DG A "C5'" 1 ATOM 186 C "C4'" . DG A 1 10 ? 0.429 -21.906 -6.990 1.00 57.13 ? 10 DG A "C4'" 1 ATOM 187 O "O4'" . DG A 1 10 ? 0.368 -20.869 -5.984 1.00 65.98 ? 10 DG A "O4'" 1 ATOM 188 C "C3'" . DG A 1 10 ? -0.118 -21.280 -8.262 1.00 57.26 ? 10 DG A "C3'" 1 ATOM 189 O "O3'" . DG A 1 10 ? -0.764 -22.300 -9.027 1.00 59.80 ? 10 DG A "O3'" 1 ATOM 190 C "C2'" . DG A 1 10 ? -1.056 -20.200 -7.742 1.00 59.04 ? 10 DG A "C2'" 1 ATOM 191 C "C1'" . DG A 1 10 ? -0.425 -19.764 -6.425 1.00 58.25 ? 10 DG A "C1'" 1 ATOM 192 N N9 . DG A 1 10 ? 0.442 -18.582 -6.493 1.00 48.32 ? 10 DG A N9 1 ATOM 193 C C8 . DG A 1 10 ? 0.289 -17.388 -5.826 1.00 44.34 ? 10 DG A C8 1 ATOM 194 N N7 . DG A 1 10 ? 1.244 -16.533 -6.079 1.00 39.29 ? 10 DG A N7 1 ATOM 195 C C5 . DG A 1 10 ? 2.087 -17.210 -6.952 1.00 40.78 ? 10 DG A C5 1 ATOM 196 C C6 . DG A 1 10 ? 3.292 -16.794 -7.575 1.00 41.72 ? 10 DG A C6 1 ATOM 197 O O6 . DG A 1 10 ? 3.880 -15.710 -7.474 1.00 43.28 ? 10 DG A O6 1 ATOM 198 N N1 . DG A 1 10 ? 3.821 -17.796 -8.384 1.00 41.05 ? 10 DG A N1 1 ATOM 199 C C2 . DG A 1 10 ? 3.265 -19.040 -8.565 1.00 45.51 ? 10 DG A C2 1 ATOM 200 N N2 . DG A 1 10 ? 3.925 -19.876 -9.381 1.00 50.43 ? 10 DG A N2 1 ATOM 201 N N3 . DG A 1 10 ? 2.148 -19.439 -7.989 1.00 45.69 ? 10 DG A N3 1 ATOM 202 C C4 . DG A 1 10 ? 1.609 -18.478 -7.211 1.00 43.31 ? 10 DG A C4 1 HETATM 203 BA BA . BA B 2 . ? 12.055 -8.031 11.408 1.00 36.86 ? 101 BA A BA 1 HETATM 204 F F2 . RKF C 3 . ? 7.005 -19.883 -7.081 1.00 41.18 ? 102 RKF A F2 1 HETATM 205 C C17 . RKF C 3 . ? 6.310 -19.101 -6.248 1.00 37.63 ? 102 RKF A C17 1 HETATM 206 C C18 . RKF C 3 . ? 6.883 -17.900 -5.983 1.00 36.83 ? 102 RKF A C18 1 HETATM 207 F F1 . RKF C 3 . ? 8.072 -17.679 -6.566 1.00 38.83 ? 102 RKF A F1 1 HETATM 208 C C14 . RKF C 3 . ? 6.240 -16.992 -5.146 1.00 34.47 ? 102 RKF A C14 1 HETATM 209 C C13 . RKF C 3 . ? 5.004 -17.330 -4.575 1.00 31.63 ? 102 RKF A C13 1 HETATM 210 N N4 . RKF C 3 . ? 4.396 -16.459 -3.742 1.00 28.90 ? 102 RKF A N4 1 HETATM 211 C C7 . RKF C 3 . ? 3.195 -16.749 -3.196 1.00 29.12 ? 102 RKF A C7 1 HETATM 212 C C8 . RKF C 3 . ? 2.578 -15.808 -2.365 1.00 28.02 ? 102 RKF A C8 1 HETATM 213 C C9 . RKF C 3 . ? 3.131 -14.557 -2.099 1.00 27.98 ? 102 RKF A C9 1 HETATM 214 C C11 . RKF C 3 . ? 2.429 -13.690 -1.275 1.00 27.13 ? 102 RKF A C11 1 HETATM 215 C C12 . RKF C 3 . ? 1.189 -14.067 -0.733 1.00 30.63 ? 102 RKF A C12 1 HETATM 216 C C10 . RKF C 3 . ? 1.343 -16.099 -1.792 1.00 28.92 ? 102 RKF A C10 1 HETATM 217 N N1 . RKF C 3 . ? 0.675 -15.282 -0.947 1.00 27.44 ? 102 RKF A N1 1 HETATM 218 C C16 . RKF C 3 . ? 5.076 -19.457 -5.689 1.00 36.21 ? 102 RKF A C16 1 HETATM 219 C C15 . RKF C 3 . ? 4.412 -18.559 -4.842 1.00 31.88 ? 102 RKF A C15 1 HETATM 220 N N3 . RKF C 3 . ? 3.218 -18.880 -4.275 1.00 30.25 ? 102 RKF A N3 1 HETATM 221 C C6 . RKF C 3 . ? 2.589 -17.984 -3.463 1.00 29.30 ? 102 RKF A C6 1 HETATM 222 C C5 . RKF C 3 . ? 1.357 -18.270 -2.879 1.00 28.00 ? 102 RKF A C5 1 HETATM 223 C C1 . RKF C 3 . ? 0.765 -17.314 -2.052 1.00 29.25 ? 102 RKF A C1 1 HETATM 224 C C4 . RKF C 3 . ? 0.690 -19.470 -3.079 1.00 26.74 ? 102 RKF A C4 1 HETATM 225 C C3 . RKF C 3 . ? -0.530 -19.667 -2.458 1.00 26.35 ? 102 RKF A C3 1 HETATM 226 C C2 . RKF C 3 . ? -1.061 -18.656 -1.663 1.00 31.02 ? 102 RKF A C2 1 HETATM 227 N N2 . RKF C 3 . ? -0.421 -17.466 -1.479 1.00 28.64 ? 102 RKF A N2 1 HETATM 228 RU RU . RKF C 3 . ? -0.952 -15.957 -0.598 1.00 31.76 ? 102 RKF A RU 1 HETATM 229 N N12 . RKF C 3 . ? -2.579 -16.632 -0.310 1.00 26.65 ? 102 RKF A N12 1 HETATM 230 C C36 . RKF C 3 . ? -3.372 -16.308 -1.335 1.00 28.21 ? 102 RKF A C36 1 HETATM 231 C C38 . RKF C 3 . ? -3.116 -17.398 0.625 1.00 31.91 ? 102 RKF A C38 1 HETATM 232 N N5 . RKF C 3 . ? -0.360 -16.612 1.000 1.00 29.94 ? 102 RKF A N5 1 HETATM 233 C C20 . RKF C 3 . ? 0.230 -17.763 1.342 1.00 36.31 ? 102 RKF A C20 1 HETATM 234 C C21 . RKF C 3 . ? 0.611 -18.010 2.681 1.00 33.02 ? 102 RKF A C21 1 HETATM 235 N N6 . RKF C 3 . ? 0.402 -17.128 3.671 1.00 30.99 ? 102 RKF A N6 1 HETATM 236 C C19 . RKF C 3 . ? -0.573 -15.763 2.006 1.00 31.27 ? 102 RKF A C19 1 HETATM 237 C C22 . RKF C 3 . ? -0.218 -15.981 3.342 1.00 31.16 ? 102 RKF A C22 1 HETATM 238 C C23 . RKF C 3 . ? -0.504 -15.004 4.289 1.00 29.62 ? 102 RKF A C23 1 HETATM 239 C C24 . RKF C 3 . ? -1.114 -13.817 3.896 1.00 27.82 ? 102 RKF A C24 1 HETATM 240 C C25 . RKF C 3 . ? -1.468 -13.630 2.574 1.00 28.81 ? 102 RKF A C25 1 HETATM 241 N N7 . RKF C 3 . ? -2.058 -12.509 2.146 1.00 29.76 ? 102 RKF A N7 1 HETATM 242 C C27 . RKF C 3 . ? -2.331 -12.331 0.858 1.00 25.74 ? 102 RKF A C27 1 HETATM 243 C C28 . RKF C 3 . ? -2.033 -13.329 -0.059 1.00 30.62 ? 102 RKF A C28 1 HETATM 244 C C26 . RKF C 3 . ? -1.181 -14.593 1.623 1.00 31.49 ? 102 RKF A C26 1 HETATM 245 N N8 . RKF C 3 . ? -1.455 -14.472 0.309 1.00 27.49 ? 102 RKF A N8 1 HETATM 246 N N9 . RKF C 3 . ? -1.564 -15.292 -2.158 1.00 26.55 ? 102 RKF A N9 1 HETATM 247 C C29 . RKF C 3 . ? -2.838 -15.546 -2.327 1.00 27.27 ? 102 RKF A C29 1 HETATM 248 C C30 . RKF C 3 . ? -1.006 -14.546 -3.106 1.00 29.83 ? 102 RKF A C30 1 HETATM 249 C C31 . RKF C 3 . ? -1.747 -14.112 -4.214 1.00 27.71 ? 102 RKF A C31 1 HETATM 250 N N10 . RKF C 3 . ? -3.041 -14.411 -4.363 1.00 28.08 ? 102 RKF A N10 1 HETATM 251 C C32 . RKF C 3 . ? -3.579 -15.136 -3.410 1.00 26.04 ? 102 RKF A C32 1 HETATM 252 C C33 . RKF C 3 . ? -4.876 -15.474 -3.518 1.00 26.41 ? 102 RKF A C33 1 HETATM 253 C C34 . RKF C 3 . ? -5.437 -16.237 -2.519 1.00 26.64 ? 102 RKF A C34 1 HETATM 254 C C35 . RKF C 3 . ? -4.698 -16.660 -1.439 1.00 26.86 ? 102 RKF A C35 1 HETATM 255 N N11 . RKF C 3 . ? -5.240 -17.419 -0.492 1.00 26.53 ? 102 RKF A N11 1 HETATM 256 C C37 . RKF C 3 . ? -4.466 -17.783 0.531 1.00 28.03 ? 102 RKF A C37 1 HETATM 257 O O . HOH D 4 . ? 11.251 -14.209 0.367 1.00 28.42 ? 201 HOH A O 1 HETATM 258 O O . HOH D 4 . ? 12.174 -8.913 17.928 1.00 33.49 ? 202 HOH A O 1 HETATM 259 O O . HOH D 4 . ? -2.558 -21.704 -4.979 1.00 30.78 ? 203 HOH A O 1 HETATM 260 O O . HOH D 4 . ? -3.453 -17.073 3.940 1.00 32.56 ? 204 HOH A O 1 HETATM 261 O O . HOH D 4 . ? -4.519 -14.628 2.521 1.00 32.39 ? 205 HOH A O 1 HETATM 262 O O . HOH D 4 . ? 9.493 -5.957 15.610 1.00 33.61 ? 206 HOH A O 1 HETATM 263 O O . HOH D 4 . ? 14.186 -17.897 -0.603 1.00 37.78 ? 207 HOH A O 1 HETATM 264 O O . HOH D 4 . ? 14.257 -9.677 21.773 1.00 38.95 ? 208 HOH A O 1 HETATM 265 O O . HOH D 4 . ? -2.180 -9.698 3.873 1.00 38.20 ? 209 HOH A O 1 HETATM 266 O O . HOH D 4 . ? 13.130 -26.339 -3.108 1.00 33.44 ? 210 HOH A O 1 HETATM 267 O O . HOH D 4 . ? 12.856 -5.827 21.681 1.00 37.12 ? 211 HOH A O 1 HETATM 268 O O . HOH D 4 . ? -0.027 -23.714 -10.969 1.00 39.72 ? 212 HOH A O 1 HETATM 269 O O . HOH D 4 . ? 8.056 -2.900 16.674 1.00 41.80 ? 213 HOH A O 1 HETATM 270 O O . HOH D 4 . ? 8.058 -5.491 7.304 1.00 29.64 ? 214 HOH A O 1 HETATM 271 O O . HOH D 4 . ? -3.189 -22.618 -7.588 1.00 36.22 ? 215 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BA 1 101 102 BA BA A . C 3 RKF 1 102 11 RKF RKF A . D 4 HOH 1 201 1 HOH HOH A . D 4 HOH 2 202 3 HOH HOH A . D 4 HOH 3 203 4 HOH HOH A . D 4 HOH 4 204 5 HOH HOH A . D 4 HOH 5 205 6 HOH HOH A . D 4 HOH 6 206 7 HOH HOH A . D 4 HOH 7 207 11 HOH HOH A . D 4 HOH 8 208 13 HOH HOH A . D 4 HOH 9 209 14 HOH HOH A . D 4 HOH 10 210 15 HOH HOH A . D 4 HOH 11 211 16 HOH HOH A . D 4 HOH 12 212 17 HOH HOH A . D 4 HOH 13 213 19 HOH HOH A . D 4 HOH 14 214 20 HOH HOH A . D 4 HOH 15 215 21 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2020 ? 1 MORE -31 ? 1 'SSA (A^2)' 4360 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 17.3000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-08 2 'Structure model' 1 1 2017-03-08 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal GDA 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0032 ? 3 XDS 'data reduction' . ? 4 Aimless 'data scaling' . ? 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 RKF F2 F N N 148 RKF C17 C Y N 149 RKF C18 C Y N 150 RKF F1 F N N 151 RKF C14 C Y N 152 RKF C13 C Y N 153 RKF N4 N Y N 154 RKF C7 C Y N 155 RKF C8 C Y N 156 RKF C9 C Y N 157 RKF C11 C Y N 158 RKF C12 C Y N 159 RKF C10 C Y N 160 RKF N1 N Y N 161 RKF C16 C Y N 162 RKF C15 C Y N 163 RKF N3 N Y N 164 RKF C6 C Y N 165 RKF C5 C Y N 166 RKF C1 C Y N 167 RKF C4 C Y N 168 RKF C3 C Y N 169 RKF C2 C Y N 170 RKF N2 N Y N 171 RKF RU RU N N 172 RKF N12 N Y N 173 RKF C36 C Y N 174 RKF C38 C Y N 175 RKF N5 N Y N 176 RKF C20 C Y N 177 RKF C21 C Y N 178 RKF N6 N Y N 179 RKF C19 C Y N 180 RKF C22 C Y N 181 RKF C23 C Y N 182 RKF C24 C Y N 183 RKF C25 C Y N 184 RKF N7 N Y N 185 RKF C27 C Y N 186 RKF C28 C Y N 187 RKF C26 C Y N 188 RKF N8 N Y N 189 RKF N9 N Y N 190 RKF C29 C Y N 191 RKF C30 C Y N 192 RKF C31 C Y N 193 RKF N10 N Y N 194 RKF C32 C Y N 195 RKF C33 C Y N 196 RKF C34 C Y N 197 RKF C35 C Y N 198 RKF N11 N Y N 199 RKF C37 C Y N 200 RKF H1 H N N 201 RKF H2 H N N 202 RKF H3 H N N 203 RKF H4 H N N 204 RKF H5 H N N 205 RKF H6 H N N 206 RKF H7 H N N 207 RKF H8 H N N 208 RKF H9 H N N 209 RKF H10 H N N 210 RKF H11 H N N 211 RKF H12 H N N 212 RKF H13 H N N 213 RKF H14 H N N 214 RKF H15 H N N 215 RKF H16 H N N 216 RKF H17 H N N 217 RKF H18 H N N 218 RKF H19 H N N 219 RKF H20 H N N 220 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 RKF F2 C17 sing N N 152 RKF F1 C18 sing N N 153 RKF C17 C18 doub Y N 154 RKF C17 C16 sing Y N 155 RKF C18 C14 sing Y N 156 RKF C16 C15 doub Y N 157 RKF C14 C13 doub Y N 158 RKF C15 C13 sing Y N 159 RKF C15 N3 sing Y N 160 RKF C13 N4 sing Y N 161 RKF N10 C31 doub Y N 162 RKF N10 C32 sing Y N 163 RKF N3 C6 doub Y N 164 RKF C31 C30 sing Y N 165 RKF N4 C7 doub Y N 166 RKF C33 C32 doub Y N 167 RKF C33 C34 sing Y N 168 RKF C6 C7 sing Y N 169 RKF C6 C5 sing Y N 170 RKF C32 C29 sing Y N 171 RKF C7 C8 sing Y N 172 RKF C30 N9 doub Y N 173 RKF C4 C5 doub Y N 174 RKF C4 C3 sing Y N 175 RKF C5 C1 sing Y N 176 RKF C34 C35 doub Y N 177 RKF C3 C2 doub Y N 178 RKF C8 C9 doub Y N 179 RKF C8 C10 sing Y N 180 RKF C29 N9 sing Y N 181 RKF C29 C36 doub Y N 182 RKF N9 RU sing N N 183 RKF C9 C11 sing Y N 184 RKF C1 C10 sing Y N 185 RKF C1 N2 doub Y N 186 RKF C10 N1 doub Y N 187 RKF C2 N2 sing Y N 188 RKF N2 RU sing N N 189 RKF C35 C36 sing Y N 190 RKF C35 N11 sing Y N 191 RKF C36 N12 sing Y N 192 RKF C11 C12 doub Y N 193 RKF N1 C12 sing Y N 194 RKF N1 RU sing N N 195 RKF RU N12 sing N N 196 RKF RU N8 sing N N 197 RKF RU N5 sing N N 198 RKF N11 C37 doub Y N 199 RKF N12 C38 doub Y N 200 RKF C28 N8 doub Y N 201 RKF C28 C27 sing Y N 202 RKF N8 C26 sing Y N 203 RKF C37 C38 sing Y N 204 RKF C27 N7 doub Y N 205 RKF N5 C20 doub Y N 206 RKF N5 C19 sing Y N 207 RKF C20 C21 sing Y N 208 RKF C26 C19 doub Y N 209 RKF C26 C25 sing Y N 210 RKF C19 C22 sing Y N 211 RKF N7 C25 sing Y N 212 RKF C25 C24 doub Y N 213 RKF C21 N6 doub Y N 214 RKF C22 N6 sing Y N 215 RKF C22 C23 doub Y N 216 RKF C24 C23 sing Y N 217 RKF C14 H1 sing N N 218 RKF C9 H2 sing N N 219 RKF C11 H3 sing N N 220 RKF C12 H4 sing N N 221 RKF C16 H5 sing N N 222 RKF C4 H6 sing N N 223 RKF C3 H7 sing N N 224 RKF C2 H8 sing N N 225 RKF C38 H9 sing N N 226 RKF C20 H10 sing N N 227 RKF C21 H11 sing N N 228 RKF C23 H12 sing N N 229 RKF C24 H13 sing N N 230 RKF C27 H14 sing N N 231 RKF C28 H15 sing N N 232 RKF C30 H16 sing N N 233 RKF C31 H17 sing N N 234 RKF C33 H18 sing N N 235 RKF C34 H19 sing N N 236 RKF C37 H20 sing N N 237 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4MS5 'double helix' 4MS5 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 10 8_555 1.021 1.416 -0.178 6.232 19.319 -72.975 1 A_DC1:DG10_A A 1 ? A 10 ? ? ? 1 A DC 1 1_555 A DG 10 1_555 1.021 1.416 -0.178 6.232 19.318 -72.975 2 A_DC1:DG10_A A 1 ? A 10 ? ? ? 1 A DC 2 1_555 A DG 9 8_555 -0.092 -0.086 0.255 -7.347 3.119 3.776 3 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DG 3 1_555 A DC 8 8_555 -0.044 0.050 0.143 22.541 -6.009 0.615 4 A_DG3:DC8_A A 3 ? A 8 ? 19 1 1 A DG 4 1_555 A DC 7 8_555 -0.214 -0.148 0.274 -4.529 2.374 -2.786 5 A_DG4:DC7_A A 4 ? A 7 ? 19 1 1 A DA 5 1_555 A DT 6 8_555 -0.401 -0.408 0.515 3.140 -4.623 5.233 6 A_DA5:DT6_A A 5 ? A 6 ? 20 1 1 A DT 6 1_555 A DA 5 8_555 0.401 -0.408 0.515 -3.140 -4.623 5.233 7 A_DT6:DA5_A A 6 ? A 5 ? 20 1 1 A DC 7 1_555 A DG 4 8_555 0.214 -0.148 0.274 4.529 2.374 -2.786 8 A_DC7:DG4_A A 7 ? A 4 ? 19 1 1 A DC 8 1_555 A DG 3 8_555 0.044 0.050 0.143 -22.541 -6.009 0.615 9 A_DC8:DG3_A A 8 ? A 3 ? 19 1 1 A DG 9 1_555 A DC 2 8_555 0.092 -0.086 0.255 7.347 3.119 3.776 10 A_DG9:DC2_A A 9 ? A 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 A DG 9 8_555 A DG 3 1_555 A DC 8 8_555 -0.315 1.671 2.799 3.058 4.785 23.589 2.616 1.621 3.009 11.492 -7.344 24.254 1 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DG 3 1_555 A DC 8 8_555 A DG 4 1_555 A DC 7 8_555 -0.007 0.601 5.153 -5.302 48.087 14.245 -5.552 -0.681 2.075 74.120 8.172 50.310 2 AA_DG3DG4:DC7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DG 4 1_555 A DC 7 8_555 A DA 5 1_555 A DT 6 8_555 -0.732 -0.016 3.225 -7.543 10.184 31.362 -1.701 0.021 3.156 17.949 13.294 33.766 3 AA_DG4DA5:DT6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DA 5 1_555 A DT 6 8_555 A DT 6 1_555 A DA 5 8_555 0.000 -0.394 3.579 0.000 3.796 34.850 -1.274 0.000 3.518 6.315 0.000 35.050 4 AA_DA5DT6:DA5DT6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DT 6 1_555 A DA 5 8_555 A DC 7 1_555 A DG 4 8_555 0.732 -0.016 3.225 7.543 10.184 31.362 -1.701 -0.021 3.156 17.949 -13.294 33.766 5 AA_DT6DC7:DG4DA5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DC 7 1_555 A DG 4 8_555 A DC 8 1_555 A DG 3 8_555 0.007 0.601 5.153 5.302 48.087 14.245 -5.552 0.681 2.075 74.120 -8.172 50.310 6 AA_DC7DC8:DG3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DC 8 1_555 A DG 3 8_555 A DG 9 1_555 A DC 2 8_555 0.315 1.671 2.799 -3.058 4.785 23.589 2.616 -1.621 3.009 11.492 7.344 24.254 7 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BARIUM ION' BA 3 "(11,12-difluorodipyrido[3,2-a:2',3'-c]phenazine-kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline-kappa~2~N~1~,N~10~)]ruthenium(2+)" RKF 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3QRN _pdbx_initial_refinement_model.details 'PDB ENTRY 3QRN' #