0.013650
0.000000
0.003538
0.000000
0.023363
0.000000
0.000000
0.000000
0.016004
0.000000
0.000000
0.000000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
104.530
90.000
73.262
42.802
64.550
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of a hypothetical protein (BACUNI_04723) from Bacteroides uniformis ATCC 8492 at 1.40 A resolution
10.2210/pdb4mxt/pdb
pdb_00004mxt
100
1
Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)
PIXEL
2013-07-01
DECTRIS PILATUS 6M
single crystal Si(111) bent
MAD
M
x-ray
1
0.91837
1.0
0.97971
1.0
0.97894
1.0
BL11-1
SSRL
0.91837,0.97971,0.97894
SYNCHROTRON
SSRL BEAMLINE BL11-1
21820.789
Uncharacterized protein
1
man
polymer
106.120
DI(HYDROXYETHYL)ETHER
2
syn
non-polymer
18.015
water
249
nat
water
no
yes
GQQPDAKNILERTAEAFRKAGGVKLAFTVNEQQGSYAGVLYLEGEKFVVETEG(MSE)KTWFDGHTQWSYVASADEVNVS
EPTQEELQTLNPYAWLSLYKQGYRLKLSSVGGKQDKSVYYIT(MSE)TAADKRKDPESVYLFVTKDTYRLHQVDLAPRGS
KY(MSE)TTILIDSYQTGQSYPDSFFVFDKKAYPTAEVID(MSE)R
GQQPDAKNILERTAEAFRKAGGVKLAFTVNEQQGSYAGVLYLEGEKFVVETEGMKTWFDGHTQWSYVASADEVNVSEPTQ
EELQTLNPYAWLSLYKQGYRLKLSSVGGKQDKSVYYITMTAADKRKDPESVYLFVTKDTYRLHQVDLAPRGSKYMTTILI
DSYQTGQSYPDSFFVFDKKAYPTAEVIDMR
A
JCSG-417927
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
BACUNI_04723
411479
Bacteroides uniformis
562
Escherichia Coli
PB1
Plasmid
SpeedET
1
2.24
45.21
VAPOR DIFFUSION, SITTING DROP
0.20M di-ammonium tartrate, 20.)% polyethylene glycol 3350, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI:Biology
software
citation_author
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Structure summary
Refinement description
Database references
Database references
Derived calculations
1
0
2013-10-16
1
1
2014-12-24
1
2
2017-11-15
1
3
2018-01-24
1
4
2023-02-01
_software.classification
_software.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2013-09-26
REL
REL
PEG
DI(HYDROXYETHYL)ETHER
HOH
water
THIS CONSTRUCT (RESIDUES 28-216) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
PEG
220
2
PEG
PEG
301
A
PEG
221
2
PEG
PEG
302
A
HOH
222
3
HOH
HOH
401
A
HOH
223
3
HOH
HOH
402
A
HOH
224
3
HOH
HOH
403
A
HOH
225
3
HOH
HOH
404
A
HOH
226
3
HOH
HOH
405
A
HOH
227
3
HOH
HOH
406
A
HOH
228
3
HOH
HOH
407
A
HOH
229
3
HOH
HOH
408
A
HOH
230
3
HOH
HOH
409
A
HOH
231
3
HOH
HOH
410
A
HOH
232
3
HOH
HOH
411
A
HOH
233
3
HOH
HOH
412
A
HOH
234
3
HOH
HOH
413
A
HOH
235
3
HOH
HOH
414
A
HOH
236
3
HOH
HOH
415
A
HOH
237
3
HOH
HOH
416
A
HOH
238
3
HOH
HOH
417
A
HOH
239
3
HOH
HOH
418
A
HOH
240
3
HOH
HOH
419
A
HOH
241
3
HOH
HOH
420
A
HOH
242
3
HOH
HOH
421
A
HOH
243
3
HOH
HOH
422
A
HOH
244
3
HOH
HOH
423
A
HOH
245
3
HOH
HOH
424
A
HOH
246
3
HOH
HOH
425
A
HOH
247
3
HOH
HOH
426
A
HOH
248
3
HOH
HOH
427
A
HOH
249
3
HOH
HOH
428
A
HOH
250
3
HOH
HOH
429
A
HOH
251
3
HOH
HOH
430
A
HOH
252
3
HOH
HOH
431
A
HOH
253
3
HOH
HOH
432
A
HOH
254
3
HOH
HOH
433
A
HOH
255
3
HOH
HOH
434
A
HOH
256
3
HOH
HOH
435
A
HOH
257
3
HOH
HOH
436
A
HOH
258
3
HOH
HOH
437
A
HOH
259
3
HOH
HOH
438
A
HOH
260
3
HOH
HOH
439
A
HOH
261
3
HOH
HOH
440
A
HOH
262
3
HOH
HOH
441
A
HOH
263
3
HOH
HOH
442
A
HOH
264
3
HOH
HOH
443
A
HOH
265
3
HOH
HOH
444
A
HOH
266
3
HOH
HOH
445
A
HOH
267
3
HOH
HOH
446
A
HOH
268
3
HOH
HOH
447
A
HOH
269
3
HOH
HOH
448
A
HOH
270
3
HOH
HOH
449
A
HOH
271
3
HOH
HOH
450
A
HOH
272
3
HOH
HOH
451
A
HOH
273
3
HOH
HOH
452
A
HOH
274
3
HOH
HOH
453
A
HOH
275
3
HOH
HOH
454
A
HOH
276
3
HOH
HOH
455
A
HOH
277
3
HOH
HOH
456
A
HOH
278
3
HOH
HOH
457
A
HOH
279
3
HOH
HOH
458
A
HOH
280
3
HOH
HOH
459
A
HOH
281
3
HOH
HOH
460
A
HOH
282
3
HOH
HOH
461
A
HOH
283
3
HOH
HOH
462
A
HOH
284
3
HOH
HOH
463
A
HOH
285
3
HOH
HOH
464
A
HOH
286
3
HOH
HOH
465
A
HOH
287
3
HOH
HOH
466
A
HOH
288
3
HOH
HOH
467
A
HOH
289
3
HOH
HOH
468
A
HOH
290
3
HOH
HOH
469
A
HOH
291
3
HOH
HOH
470
A
HOH
292
3
HOH
HOH
471
A
HOH
293
3
HOH
HOH
472
A
HOH
294
3
HOH
HOH
473
A
HOH
295
3
HOH
HOH
474
A
HOH
296
3
HOH
HOH
475
A
HOH
297
3
HOH
HOH
476
A
HOH
298
3
HOH
HOH
477
A
HOH
299
3
HOH
HOH
478
A
HOH
300
3
HOH
HOH
479
A
HOH
301
3
HOH
HOH
480
A
HOH
302
3
HOH
HOH
481
A
HOH
303
3
HOH
HOH
482
A
HOH
304
3
HOH
HOH
483
A
HOH
305
3
HOH
HOH
484
A
HOH
306
3
HOH
HOH
485
A
HOH
307
3
HOH
HOH
486
A
HOH
308
3
HOH
HOH
487
A
HOH
309
3
HOH
HOH
488
A
HOH
310
3
HOH
HOH
489
A
HOH
311
3
HOH
HOH
490
A
HOH
312
3
HOH
HOH
491
A
HOH
313
3
HOH
HOH
492
A
HOH
314
3
HOH
HOH
493
A
HOH
315
3
HOH
HOH
494
A
HOH
316
3
HOH
HOH
495
A
HOH
317
3
HOH
HOH
496
A
HOH
318
3
HOH
HOH
497
A
HOH
319
3
HOH
HOH
498
A
HOH
320
3
HOH
HOH
499
A
HOH
321
3
HOH
HOH
500
A
HOH
322
3
HOH
HOH
501
A
HOH
323
3
HOH
HOH
502
A
HOH
324
3
HOH
HOH
503
A
HOH
325
3
HOH
HOH
504
A
HOH
326
3
HOH
HOH
505
A
HOH
327
3
HOH
HOH
506
A
HOH
328
3
HOH
HOH
507
A
HOH
329
3
HOH
HOH
508
A
HOH
330
3
HOH
HOH
509
A
HOH
331
3
HOH
HOH
510
A
HOH
332
3
HOH
HOH
511
A
HOH
333
3
HOH
HOH
512
A
HOH
334
3
HOH
HOH
513
A
HOH
335
3
HOH
HOH
514
A
HOH
336
3
HOH
HOH
515
A
HOH
337
3
HOH
HOH
516
A
HOH
338
3
HOH
HOH
517
A
HOH
339
3
HOH
HOH
518
A
HOH
340
3
HOH
HOH
519
A
HOH
341
3
HOH
HOH
520
A
HOH
342
3
HOH
HOH
521
A
HOH
343
3
HOH
HOH
522
A
HOH
344
3
HOH
HOH
523
A
HOH
345
3
HOH
HOH
524
A
HOH
346
3
HOH
HOH
525
A
HOH
347
3
HOH
HOH
526
A
HOH
348
3
HOH
HOH
527
A
HOH
349
3
HOH
HOH
528
A
HOH
350
3
HOH
HOH
529
A
HOH
351
3
HOH
HOH
530
A
HOH
352
3
HOH
HOH
531
A
HOH
353
3
HOH
HOH
532
A
HOH
354
3
HOH
HOH
533
A
HOH
355
3
HOH
HOH
534
A
HOH
356
3
HOH
HOH
535
A
HOH
357
3
HOH
HOH
536
A
HOH
358
3
HOH
HOH
537
A
HOH
359
3
HOH
HOH
538
A
HOH
360
3
HOH
HOH
539
A
HOH
361
3
HOH
HOH
540
A
HOH
362
3
HOH
HOH
541
A
HOH
363
3
HOH
HOH
542
A
HOH
364
3
HOH
HOH
543
A
HOH
365
3
HOH
HOH
544
A
HOH
366
3
HOH
HOH
545
A
HOH
367
3
HOH
HOH
546
A
HOH
368
3
HOH
HOH
547
A
HOH
369
3
HOH
HOH
548
A
HOH
370
3
HOH
HOH
549
A
HOH
371
3
HOH
HOH
550
A
HOH
372
3
HOH
HOH
551
A
HOH
373
3
HOH
HOH
552
A
HOH
374
3
HOH
HOH
553
A
HOH
375
3
HOH
HOH
554
A
HOH
376
3
HOH
HOH
555
A
HOH
377
3
HOH
HOH
556
A
HOH
378
3
HOH
HOH
557
A
HOH
379
3
HOH
HOH
558
A
HOH
380
3
HOH
HOH
559
A
HOH
381
3
HOH
HOH
560
A
HOH
382
3
HOH
HOH
561
A
HOH
383
3
HOH
HOH
562
A
HOH
384
3
HOH
HOH
563
A
HOH
385
3
HOH
HOH
564
A
HOH
386
3
HOH
HOH
565
A
HOH
387
3
HOH
HOH
566
A
HOH
388
3
HOH
HOH
567
A
HOH
389
3
HOH
HOH
568
A
HOH
390
3
HOH
HOH
569
A
HOH
391
3
HOH
HOH
570
A
HOH
392
3
HOH
HOH
571
A
HOH
393
3
HOH
HOH
572
A
HOH
394
3
HOH
HOH
573
A
HOH
395
3
HOH
HOH
574
A
HOH
396
3
HOH
HOH
575
A
HOH
397
3
HOH
HOH
576
A
HOH
398
3
HOH
HOH
577
A
HOH
399
3
HOH
HOH
578
A
HOH
400
3
HOH
HOH
579
A
HOH
401
3
HOH
HOH
580
A
HOH
402
3
HOH
HOH
581
A
HOH
403
3
HOH
HOH
582
A
HOH
404
3
HOH
HOH
583
A
HOH
405
3
HOH
HOH
584
A
HOH
406
3
HOH
HOH
585
A
HOH
407
3
HOH
HOH
586
A
HOH
408
3
HOH
HOH
587
A
HOH
409
3
HOH
HOH
588
A
HOH
410
3
HOH
HOH
589
A
HOH
411
3
HOH
HOH
590
A
HOH
412
3
HOH
HOH
591
A
HOH
413
3
HOH
HOH
592
A
HOH
414
3
HOH
HOH
593
A
HOH
415
3
HOH
HOH
594
A
HOH
416
3
HOH
HOH
595
A
HOH
417
3
HOH
HOH
596
A
HOH
418
3
HOH
HOH
597
A
HOH
419
3
HOH
HOH
598
A
HOH
420
3
HOH
HOH
599
A
HOH
421
3
HOH
HOH
600
A
HOH
422
3
HOH
HOH
601
A
HOH
423
3
HOH
HOH
602
A
HOH
424
3
HOH
HOH
603
A
HOH
425
3
HOH
HOH
604
A
HOH
426
3
HOH
HOH
605
A
HOH
427
3
HOH
HOH
606
A
HOH
428
3
HOH
HOH
607
A
HOH
429
3
HOH
HOH
608
A
HOH
430
3
HOH
HOH
609
A
HOH
431
3
HOH
HOH
610
A
HOH
432
3
HOH
HOH
611
A
HOH
433
3
HOH
HOH
612
A
HOH
434
3
HOH
HOH
613
A
HOH
435
3
HOH
HOH
614
A
HOH
436
3
HOH
HOH
615
A
HOH
437
3
HOH
HOH
616
A
HOH
438
3
HOH
HOH
617
A
HOH
439
3
HOH
HOH
618
A
HOH
440
3
HOH
HOH
619
A
HOH
441
3
HOH
HOH
620
A
HOH
442
3
HOH
HOH
621
A
HOH
443
3
HOH
HOH
622
A
HOH
444
3
HOH
HOH
623
A
HOH
445
3
HOH
HOH
624
A
HOH
446
3
HOH
HOH
625
A
HOH
447
3
HOH
HOH
626
A
HOH
448
3
HOH
HOH
627
A
HOH
449
3
HOH
HOH
628
A
HOH
450
3
HOH
HOH
629
A
HOH
451
3
HOH
HOH
630
A
HOH
452
3
HOH
HOH
631
A
HOH
453
3
HOH
HOH
632
A
HOH
454
3
HOH
HOH
633
A
HOH
455
3
HOH
HOH
634
A
HOH
456
3
HOH
HOH
635
A
HOH
457
3
HOH
HOH
636
A
HOH
458
3
HOH
HOH
637
A
HOH
459
3
HOH
HOH
638
A
HOH
460
3
HOH
HOH
639
A
HOH
461
3
HOH
HOH
640
A
HOH
462
3
HOH
HOH
641
A
HOH
463
3
HOH
HOH
642
A
HOH
464
3
HOH
HOH
643
A
HOH
465
3
HOH
HOH
644
A
HOH
466
3
HOH
HOH
645
A
HOH
467
3
HOH
HOH
646
A
HOH
468
3
HOH
HOH
647
A
HOH
469
3
HOH
HOH
648
A
HOH
470
3
HOH
HOH
649
A
n
1
0
A
GLN
28
n
2
GLN
28
A
GLN
29
n
3
GLN
29
A
PRO
30
n
4
PRO
30
A
ASP
31
n
5
ASP
31
A
ALA
32
n
6
ALA
32
A
LYS
33
n
7
LYS
33
A
ASN
34
n
8
ASN
34
A
ILE
35
n
9
ILE
35
A
LEU
36
n
10
LEU
36
A
GLU
37
n
11
GLU
37
A
ARG
38
n
12
ARG
38
A
THR
39
n
13
THR
39
A
ALA
40
n
14
ALA
40
A
GLU
41
n
15
GLU
41
A
ALA
42
n
16
ALA
42
A
PHE
43
n
17
PHE
43
A
ARG
44
n
18
ARG
44
A
LYS
45
n
19
LYS
45
A
ALA
46
n
20
ALA
46
A
GLY
47
n
21
GLY
47
A
GLY
48
n
22
GLY
48
A
VAL
49
n
23
VAL
49
A
LYS
50
n
24
LYS
50
A
LEU
51
n
25
LEU
51
A
ALA
52
n
26
ALA
52
A
PHE
53
n
27
PHE
53
A
THR
54
n
28
THR
54
A
VAL
55
n
29
VAL
55
A
ASN
56
n
30
ASN
56
A
GLU
57
n
31
GLU
57
A
GLN
58
n
32
GLN
58
A
GLN
59
n
33
GLN
59
A
GLY
60
n
34
GLY
60
A
SER
61
n
35
SER
61
A
TYR
62
n
36
TYR
62
A
ALA
63
n
37
ALA
63
A
GLY
64
n
38
GLY
64
A
VAL
65
n
39
VAL
65
A
LEU
66
n
40
LEU
66
A
TYR
67
n
41
TYR
67
A
LEU
68
n
42
LEU
68
A
GLU
69
n
43
GLU
69
A
GLY
70
n
44
GLY
70
A
GLU
71
n
45
GLU
71
A
LYS
72
n
46
LYS
72
A
PHE
73
n
47
PHE
73
A
VAL
74
n
48
VAL
74
A
VAL
75
n
49
VAL
75
A
GLU
76
n
50
GLU
76
A
THR
77
n
51
THR
77
A
GLU
78
n
52
GLU
78
A
GLY
79
n
53
GLY
79
A
MSE
80
n
54
MSE
80
A
LYS
81
n
55
LYS
81
A
THR
82
n
56
THR
82
A
TRP
83
n
57
TRP
83
A
PHE
84
n
58
PHE
84
A
ASP
85
n
59
ASP
85
A
GLY
86
n
60
GLY
86
A
HIS
87
n
61
HIS
87
A
THR
88
n
62
THR
88
A
GLN
89
n
63
GLN
89
A
TRP
90
n
64
TRP
90
A
SER
91
n
65
SER
91
A
TYR
92
n
66
TYR
92
A
VAL
93
n
67
VAL
93
A
ALA
94
n
68
ALA
94
A
SER
95
n
69
SER
95
A
ALA
96
n
70
ALA
96
A
ASP
97
n
71
ASP
97
A
GLU
98
n
72
GLU
98
A
VAL
99
n
73
VAL
99
A
ASN
100
n
74
ASN
100
A
VAL
101
n
75
VAL
101
A
SER
102
n
76
SER
102
A
GLU
103
n
77
GLU
103
A
PRO
104
n
78
PRO
104
A
THR
105
n
79
THR
105
A
GLN
106
n
80
GLN
106
A
GLU
107
n
81
GLU
107
A
GLU
108
n
82
GLU
108
A
LEU
109
n
83
LEU
109
A
GLN
110
n
84
GLN
110
A
THR
111
n
85
THR
111
A
LEU
112
n
86
LEU
112
A
ASN
113
n
87
ASN
113
A
PRO
114
n
88
PRO
114
A
TYR
115
n
89
TYR
115
A
ALA
116
n
90
ALA
116
A
TRP
117
n
91
TRP
117
A
LEU
118
n
92
LEU
118
A
SER
119
n
93
SER
119
A
LEU
120
n
94
LEU
120
A
TYR
121
n
95
TYR
121
A
LYS
122
n
96
LYS
122
A
GLN
123
n
97
GLN
123
A
GLY
124
n
98
GLY
124
A
TYR
125
n
99
TYR
125
A
ARG
126
n
100
ARG
126
A
LEU
127
n
101
LEU
127
A
LYS
128
n
102
LYS
128
A
LEU
129
n
103
LEU
129
A
SER
130
n
104
SER
130
A
SER
131
n
105
SER
131
A
VAL
132
n
106
VAL
132
A
GLY
133
n
107
GLY
133
A
GLY
134
n
108
GLY
134
A
n
109
135
A
n
110
136
A
ASP
137
n
111
ASP
137
A
LYS
138
n
112
LYS
138
A
SER
139
n
113
SER
139
A
VAL
140
n
114
VAL
140
A
TYR
141
n
115
TYR
141
A
TYR
142
n
116
TYR
142
A
ILE
143
n
117
ILE
143
A
THR
144
n
118
THR
144
A
MSE
145
n
119
MSE
145
A
THR
146
n
120
THR
146
A
ALA
147
n
121
ALA
147
A
ALA
148
n
122
ALA
148
A
ASP
149
n
123
ASP
149
A
LYS
150
n
124
LYS
150
A
ARG
151
n
125
ARG
151
A
LYS
152
n
126
LYS
152
A
ASP
153
n
127
ASP
153
A
PRO
154
n
128
PRO
154
A
GLU
155
n
129
GLU
155
A
SER
156
n
130
SER
156
A
VAL
157
n
131
VAL
157
A
TYR
158
n
132
TYR
158
A
LEU
159
n
133
LEU
159
A
PHE
160
n
134
PHE
160
A
VAL
161
n
135
VAL
161
A
THR
162
n
136
THR
162
A
LYS
163
n
137
LYS
163
A
ASP
164
n
138
ASP
164
A
THR
165
n
139
THR
165
A
TYR
166
n
140
TYR
166
A
ARG
167
n
141
ARG
167
A
LEU
168
n
142
LEU
168
A
HIS
169
n
143
HIS
169
A
GLN
170
n
144
GLN
170
A
VAL
171
n
145
VAL
171
A
ASP
172
n
146
ASP
172
A
LEU
173
n
147
LEU
173
A
ALA
174
n
148
ALA
174
A
PRO
175
n
149
PRO
175
A
ARG
176
n
150
ARG
176
A
GLY
177
n
151
GLY
177
A
SER
178
n
152
SER
178
A
LYS
179
n
153
LYS
179
A
TYR
180
n
154
TYR
180
A
MSE
181
n
155
MSE
181
A
THR
182
n
156
THR
182
A
THR
183
n
157
THR
183
A
ILE
184
n
158
ILE
184
A
LEU
185
n
159
LEU
185
A
ILE
186
n
160
ILE
186
A
ASP
187
n
161
ASP
187
A
SER
188
n
162
SER
188
A
TYR
189
n
163
TYR
189
A
GLN
190
n
164
GLN
190
A
THR
191
n
165
THR
191
A
GLY
192
n
166
GLY
192
A
GLN
193
n
167
GLN
193
A
SER
194
n
168
SER
194
A
TYR
195
n
169
TYR
195
A
PRO
196
n
170
PRO
196
A
ASP
197
n
171
ASP
197
A
SER
198
n
172
SER
198
A
PHE
199
n
173
PHE
199
A
PHE
200
n
174
PHE
200
A
VAL
201
n
175
VAL
201
A
PHE
202
n
176
PHE
202
A
ASP
203
n
177
ASP
203
A
LYS
204
n
178
LYS
204
A
LYS
205
n
179
LYS
205
A
ALA
206
n
180
ALA
206
A
TYR
207
n
181
TYR
207
A
PRO
208
n
182
PRO
208
A
THR
209
n
183
THR
209
A
ALA
210
n
184
ALA
210
A
GLU
211
n
185
GLU
211
A
VAL
212
n
186
VAL
212
A
ILE
213
n
187
ILE
213
A
ASP
214
n
188
ASP
214
A
MSE
215
n
189
MSE
215
A
ARG
216
n
190
ARG
216
A
author_and_software_defined_assembly
PISA
2
dimeric
3290
12
18990
A
MSE
80
SELENOMETHIONINE
A
MSE
54
MET
A
MSE
145
SELENOMETHIONINE
A
MSE
119
MET
A
MSE
181
SELENOMETHIONINE
A
MSE
155
MET
A
MSE
215
SELENOMETHIONINE
A
MSE
189
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_655
-x+1,y,-z
crystal symmetry operation
73.2620000000
0.0000000000
0.0000000000
A
N
SER
130
A
N
SER
104
A
O
TYR
142
A
O
TYR
116
A
N
ILE
143
A
N
ILE
117
A
O
LEU
159
A
O
LEU
133
A
N
PHE
160
A
N
PHE
134
A
O
HIS
169
A
O
HIS
143
A
N
VAL
171
A
N
VAL
145
A
O
ILE
184
A
O
ILE
158
A
O
LEU
185
A
O
LEU
159
A
N
THR
54
A
N
THR
28
A
N
VAL
55
A
N
VAL
29
A
O
TYR
62
A
O
TYR
36
A
N
TYR
67
A
N
TYR
41
A
O
VAL
74
A
O
VAL
48
A
N
PHE
73
A
N
PHE
47
A
O
PHE
84
A
O
PHE
58
A
N
LYS
81
A
N
LYS
55
A
O
TYR
92
A
O
TYR
66
A
N
GLN
89
A
N
GLN
63
A
O
SER
102
A
O
SER
76
A
N
VAL
99
A
N
VAL
73
A
O
ILE
213
A
O
ILE
187
1
A
CG
GLN
28
A
CG
GLN
2
1
Y
1
A
CD
GLN
28
A
CD
GLN
2
1
Y
1
A
OE1
GLN
28
A
OE1
GLN
2
1
Y
1
A
NE2
GLN
28
A
NE2
GLN
2
1
Y
1
A
CD
GLN
59
A
CD
GLN
33
1
Y
1
A
OE1
GLN
59
A
OE1
GLN
33
1
Y
1
A
NE2
GLN
59
A
NE2
GLN
33
1
Y
1
A
CG
GLU
107
A
CG
GLU
81
1
Y
1
A
CD
GLU
107
A
CD
GLU
81
1
Y
1
A
OE1
GLU
107
A
OE1
GLU
81
1
Y
1
A
OE2
GLU
107
A
OE2
GLU
81
1
Y
1
A
CB
ASP
137
A
CB
ASP
111
1
Y
1
A
CG
ASP
137
A
CG
ASP
111
1
Y
1
A
OD1
ASP
137
A
OD1
ASP
111
1
Y
1
A
OD2
ASP
137
A
OD2
ASP
111
1
Y
1
A
CG
LYS
150
A
CG
LYS
124
1
Y
1
A
CD
LYS
150
A
CD
LYS
124
1
Y
1
A
CE
LYS
150
A
CE
LYS
124
1
Y
1
A
NZ
LYS
150
A
NZ
LYS
124
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
LYS
135
A
LYS
109
1
Y
1
A
GLN
136
A
GLN
110
1
Y
1
A
A
O
O
HOH
HOH
582
623
2.17
1
A
A
O
O
HOH
HOH
426
523
2.17
1_555
3_445
1
A
HIS
87
-138.33
-48.74
1
A
HIS
87
-139.67
-45.64
58.390
20.2630
8.300
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5.POLYETHYLENE GLYCOL FRAGMENTS (PEG) FROM THE CRYSTALLIZATION HAVE BEEN MODELED INTO THE STRUCTURE.
0.1733
0.1428
0.1443
1.4000
27.049
1850
36766
5.0300
96.1500
1.000
0.120
0.1300
1
1.900
MAD
16.4400
0.9000
1.1100
MLHL
FLAT BULK SOLVENT MODEL
1.4000
27.049
249
1749
14
0
1486
0.011
1831
1.365
2534
0.086
270
0.006
337
13.987
727
0.2512
0.2253
1.4389
119
2516
2635
13
90.0000
0.2228
0.1846
1.4812
126
2689
2815
13
96.0000
0.1941
0.1561
1.5290
150
2718
2868
13
98.0000
0.1932
0.1363
1.5837
147
2711
2858
13
98.0000
0.1787
0.1251
1.6471
148
2708
2856
13
98.0000
0.1635
0.1202
1.7220
133
2697
2830
13
97.0000
0.1679
0.1279
1.8128
130
2662
2792
13
96.0000
0.1817
0.1244
1.9264
166
2755
2921
13
98.0000
0.1630
0.1162
2.0750
150
2689
2839
13
98.0000
0.1638
0.1235
2.2838
148
2640
2788
13
95.0000
0.1413
0.1396
2.6140
148
2747
2895
13
98.0000
0.1734
0.1557
3.2924
155
2672
2827
13
95.0000
0.1810
0.1553
27.0537
130
2712
2842
13
94.0000
15.930
1.40
27.049
4MXT
36767
-3.000
0.033
1
10.300
89.800
0.380
1.400
1.450
1.7
8448
5956
1
79.700
0.275
1.450
1.510
2.2
9541
6863
1
88.100
0.170
1.510
1.580
3.5
10200
7014
1
92.900
0.128
1.580
1.660
4.6
9442
6568
1
92.400
0.093
1.660
1.760
6.1
9106
6481
1
89.000
0.064
1.760
1.900
8.8
10246
7135
1
93.200
0.044
1.900
2.090
13.3
9998
6935
1
92.800
0.036
2.090
2.390
16.8
9513
6685
1
89.400
0.030
2.390
3.010
19.9
9986
6883
1
91.900
0.021
3.010
25.3
9705
6655
1
88.300
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
data extraction
PDB
deposit@deposit.rcsb.org
June 10, 2010
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.10
phasing
George M. Sheldrick
gsheldr@shelx.uni-ac.gwdg.de
Fortran_77
http://shelx.uni-ac.gwdg.de/SHELX/
SHELX
package
phasing
Eric de La Fortelle
sharp-develop@globalphasing.com
http://www.globalphasing.com/sharp/
SHARP
package
refinement
P.D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.2
data reduction
XDS
data scaling
XSCALE
phasing
SHELXD
Crystal structure of an Outer-membrane lipoprotein carrier protein (BACUNI_04723) from Bacteroides uniformis ATCC 8492 at 1.40 A resolution
1
N
N
2
N
N
2
N
N
3
N
N
A
ASP
31
A
ASP
5
HELX_P
A
LYS
45
A
LYS
19
1
1
15
A
ASN
113
A
ASN
87
HELX_P
A
GLN
123
A
GLN
97
5
2
11
A
PRO
196
A
PRO
170
HELX_P
A
VAL
201
A
VAL
175
5
3
6
A
ASP
203
A
ASP
177
HELX_P
A
TYR
207
A
TYR
181
5
4
5
covale
1.330
both
A
A
GLY
79
A
C
GLY
53
1_555
A
MSE
80
A
N
MSE
54
1_555
covale
1.328
both
B
A
GLY
79
A
C
GLY
53
1_555
A
MSE
80
A
N
MSE
54
1_555
covale
1.329
both
C
A
GLY
79
A
C
GLY
53
1_555
A
MSE
80
A
N
MSE
54
1_555
covale
1.323
both
A
A
MSE
80
A
C
MSE
54
1_555
A
LYS
81
A
N
LYS
55
1_555
covale
1.325
both
B
A
MSE
80
A
C
MSE
54
1_555
A
LYS
81
A
N
LYS
55
1_555
covale
1.328
both
C
A
MSE
80
A
C
MSE
54
1_555
A
LYS
81
A
N
LYS
55
1_555
covale
1.335
both
A
THR
144
A
C
THR
118
1_555
A
MSE
145
A
N
MSE
119
1_555
covale
1.325
both
A
MSE
145
A
C
MSE
119
1_555
A
THR
146
A
N
THR
120
1_555
covale
1.322
both
A
TYR
180
A
C
TYR
154
1_555
A
MSE
181
A
N
MSE
155
1_555
covale
1.335
both
A
MSE
181
A
C
MSE
155
1_555
A
THR
182
A
N
THR
156
1_555
covale
1.328
both
A
ASP
214
A
C
ASP
188
1_555
A
MSE
215
A
N
MSE
189
1_555
covale
1.328
both
A
MSE
215
A
C
MSE
189
1_555
A
ARG
216
A
N
ARG
190
1_555
PROTEIN TRANSPORT
LolA-like prokaryotic lipoproteins and lipoprotein localization factors fold, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, PROTEIN TRANSPORT
A
ASP
153
A
ASP
127
1
A
PRO
154
A
PRO
128
9.10
A7VAU1_BACUN
UNP
1
28
A7VAU1
QQPDAKNILERTAEAFRKAGGVKLAFTVNEQQGSYAGVLYLEGEKFVVETEGMKTWFDGHTQWSYVASADEVNVSEPTQE
ELQTLNPYAWLSLYKQGYRLKLSSVGGKQDKSVYYITMTAADKRKDPESVYLFVTKDTYRLHQVDLAPRGSKYMTTILID
SYQTGQSYPDSFFVFDKKAYPTAEVIDMR
28
216
4MXT
28
216
A7VAU1
A
1
2
190
1
expression tag
GLY
0
4MXT
A
A7VAU1
UNP
1
12
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
TYR
125
A
TYR
99
A
VAL
132
A
VAL
106
A
VAL
140
A
VAL
114
A
ALA
147
A
ALA
121
A
SER
156
A
SER
130
A
VAL
161
A
VAL
135
A
LEU
168
A
LEU
142
A
ALA
174
A
ALA
148
A
THR
182
A
THR
156
A
GLN
193
A
GLN
167
A
GLY
48
A
GLY
22
A
GLU
57
A
GLU
31
A
GLY
60
A
GLY
34
A
GLU
69
A
GLU
43
A
LYS
72
A
LYS
46
A
THR
77
A
THR
51
A
MSE
80
A
MSE
54
A
PHE
84
A
PHE
58
A
GLN
89
A
GLN
63
A
VAL
93
A
VAL
67
A
GLU
98
A
GLU
72
A
SER
102
A
SER
76
A
GLU
211
A
GLU
185
A
ASP
214
A
ASP
188
BINDING SITE FOR RESIDUE PEG A 301
A
PEG
301
Software
3
BINDING SITE FOR RESIDUE PEG A 302
A
PEG
302
Software
5
A
LEU
112
A
LEU
86
3
1_555
A
ILE
184
A
ILE
158
3
1_555
A
HOH
501
D
HOH
3
1_555
A
ALA
116
A
ALA
90
5
1_555
A
TRP
117
A
TRP
91
5
1_555
A
SER
119
A
SER
93
5
1_555
A
GLN
123
A
GLN
97
5
1_555
A
HOH
591
D
HOH
5
1_555
5
C 1 2 1