0.014618
0.000000
0.000000
0.000000
0.014618
0.000000
0.000000
0.000000
0.026847
0.00000
0.00000
0.00000
Qi, S.
O'Hayre, M.
Gutkind, J.S.
Hurley, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
68.411
68.411
37.248
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
N
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
S
C
N
105
N
C
N
106
N
O
N
107
N
C
Y
108
N
C
Y
109
N
N
Y
110
N
C
Y
111
N
C
Y
112
N
N
N
113
N
O
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
O
N
125
N
H
N
126
N
H
N
127
N
N
N
128
S
C
N
129
N
C
N
130
N
O
N
131
S
C
N
132
N
C
N
133
N
C
N
134
N
C
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
N
N
150
S
C
N
151
N
C
N
152
N
O
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
C
N
157
N
O
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
N
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
S
C
N
198
N
C
N
199
N
O
N
200
N
C
N
201
N
C
N
202
N
S
N
203
N
C
N
204
N
O
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
Y
221
N
C
Y
222
N
C
Y
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
O
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
N
N
271
S
C
N
272
N
C
N
273
N
O
N
274
R
C
N
275
N
O
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
N
Y
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
Y
108
N
sing
Y
109
N
doub
Y
110
N
doub
N
111
N
sing
Y
112
N
sing
N
113
N
sing
Y
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
Y
216
N
doub
Y
217
N
sing
Y
218
N
sing
N
219
N
sing
Y
220
N
doub
N
221
N
sing
Y
222
N
doub
N
223
N
sing
Y
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
Y
285
N
doub
Y
286
N
sing
Y
287
N
sing
N
288
N
sing
Y
289
N
doub
Y
290
N
sing
Y
291
N
sing
N
292
N
sing
Y
293
N
sing
Y
294
N
doub
N
295
N
sing
Y
296
N
doub
N
297
N
sing
Y
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
doub
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
289
4743
4752
10.1074/jbc.M113.527473
24379409
Structural and biochemical basis for ubiquitin ligase recruitment by arrestin-related domain-containing protein-3 (ARRDC3).
2014
10.2210/pdb4n7f/pdb
pdb_00004n7f
100
1
IMAGE PLATE
2012-11-21
MAR scanner 300 mm plate
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
21-ID-D
APS
1.0000
SYNCHROTRON
APS BEAMLINE 21-ID-D
4447.042
E3 ubiquitin-protein ligase NEDD4
WW3 domain (UNP residues 841-874)
2
man
polymer
18.015
water
106
nat
water
Cell proliferation-inducing gene 53 protein, Neural precursor cell expressed developmentally down-regulated protein 4, NEDD-4
no
no
AMGSFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK
AMGSFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
KIAA0093, NEDD4, NEDD4-1, PIG53
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
plasmid
pGST-parallel2
1
2.45
49.78
VAPOR DIFFUSION, HANGING DROP
8.0
3.0M NaCl, 100mM Tris-HCl 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K
294
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Database references
Database references
Data collection
Database references
1
0
2014-01-08
1
1
2014-02-05
1
2
2014-10-08
1
3
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
RCSB
2013-10-15
REL
REL
HOH
water
HOH
1
2
HOH
HOH
501
A
HOH
2
2
HOH
HOH
502
A
HOH
7
2
HOH
HOH
503
A
HOH
12
2
HOH
HOH
504
A
HOH
13
2
HOH
HOH
505
A
HOH
15
2
HOH
HOH
506
A
HOH
16
2
HOH
HOH
507
A
HOH
20
2
HOH
HOH
508
A
HOH
27
2
HOH
HOH
509
A
HOH
30
2
HOH
HOH
510
A
HOH
31
2
HOH
HOH
511
A
HOH
33
2
HOH
HOH
512
A
HOH
37
2
HOH
HOH
513
A
HOH
43
2
HOH
HOH
514
A
HOH
44
2
HOH
HOH
515
A
HOH
45
2
HOH
HOH
516
A
HOH
46
2
HOH
HOH
517
A
HOH
47
2
HOH
HOH
518
A
HOH
54
2
HOH
HOH
519
A
HOH
59
2
HOH
HOH
520
A
HOH
63
2
HOH
HOH
521
A
HOH
64
2
HOH
HOH
522
A
HOH
68
2
HOH
HOH
523
A
HOH
69
2
HOH
HOH
524
A
HOH
71
2
HOH
HOH
525
A
HOH
72
2
HOH
HOH
526
A
HOH
74
2
HOH
HOH
527
A
HOH
77
2
HOH
HOH
528
A
HOH
78
2
HOH
HOH
529
A
HOH
81
2
HOH
HOH
530
A
HOH
82
2
HOH
HOH
531
A
HOH
83
2
HOH
HOH
532
A
HOH
84
2
HOH
HOH
533
A
HOH
85
2
HOH
HOH
534
A
HOH
87
2
HOH
HOH
535
A
HOH
89
2
HOH
HOH
536
A
HOH
90
2
HOH
HOH
537
A
HOH
91
2
HOH
HOH
538
A
HOH
93
2
HOH
HOH
539
A
HOH
96
2
HOH
HOH
540
A
HOH
98
2
HOH
HOH
541
A
HOH
99
2
HOH
HOH
542
A
HOH
101
2
HOH
HOH
543
A
HOH
102
2
HOH
HOH
544
A
HOH
103
2
HOH
HOH
545
A
HOH
104
2
HOH
HOH
546
A
HOH
5
2
HOH
HOH
547
A
HOH
22
2
HOH
HOH
548
A
HOH
61
2
HOH
HOH
549
A
HOH
11
2
HOH
HOH
550
A
HOH
14
2
HOH
HOH
551
A
HOH
3
2
HOH
HOH
501
B
HOH
4
2
HOH
HOH
502
B
HOH
6
2
HOH
HOH
503
B
HOH
8
2
HOH
HOH
504
B
HOH
9
2
HOH
HOH
505
B
HOH
10
2
HOH
HOH
506
B
HOH
17
2
HOH
HOH
507
B
HOH
18
2
HOH
HOH
508
B
HOH
19
2
HOH
HOH
509
B
HOH
21
2
HOH
HOH
510
B
HOH
23
2
HOH
HOH
511
B
HOH
24
2
HOH
HOH
512
B
HOH
25
2
HOH
HOH
513
B
HOH
26
2
HOH
HOH
514
B
HOH
28
2
HOH
HOH
515
B
HOH
29
2
HOH
HOH
516
B
HOH
32
2
HOH
HOH
517
B
HOH
34
2
HOH
HOH
518
B
HOH
35
2
HOH
HOH
519
B
HOH
36
2
HOH
HOH
520
B
HOH
38
2
HOH
HOH
521
B
HOH
39
2
HOH
HOH
522
B
HOH
40
2
HOH
HOH
523
B
HOH
41
2
HOH
HOH
524
B
HOH
42
2
HOH
HOH
525
B
HOH
48
2
HOH
HOH
526
B
HOH
49
2
HOH
HOH
527
B
HOH
50
2
HOH
HOH
528
B
HOH
51
2
HOH
HOH
529
B
HOH
52
2
HOH
HOH
530
B
HOH
53
2
HOH
HOH
531
B
HOH
55
2
HOH
HOH
532
B
HOH
56
2
HOH
HOH
533
B
HOH
57
2
HOH
HOH
534
B
HOH
58
2
HOH
HOH
535
B
HOH
60
2
HOH
HOH
536
B
HOH
62
2
HOH
HOH
537
B
HOH
65
2
HOH
HOH
538
B
HOH
66
2
HOH
HOH
539
B
HOH
67
2
HOH
HOH
540
B
HOH
70
2
HOH
HOH
541
B
HOH
73
2
HOH
HOH
542
B
HOH
75
2
HOH
HOH
543
B
HOH
76
2
HOH
HOH
544
B
HOH
79
2
HOH
HOH
545
B
HOH
80
2
HOH
HOH
546
B
HOH
86
2
HOH
HOH
547
B
HOH
88
2
HOH
HOH
548
B
HOH
92
2
HOH
HOH
549
B
HOH
94
2
HOH
HOH
550
B
HOH
95
2
HOH
HOH
551
B
HOH
97
2
HOH
HOH
552
B
HOH
100
2
HOH
HOH
553
B
HOH
105
2
HOH
HOH
554
B
HOH
106
2
HOH
HOH
555
B
ALA
1
n
1
ALA
1
A
MET
2
n
2
MET
2
A
GLY
3
n
3
GLY
3
A
SER
4
n
4
SER
4
A
PHE
422
n
5
PHE
422
A
LEU
423
n
6
LEU
423
A
PRO
424
n
7
PRO
424
A
LYS
425
n
8
LYS
425
A
GLY
426
n
9
GLY
426
A
TRP
427
n
10
TRP
427
A
GLU
428
n
11
GLU
428
A
VAL
429
n
12
VAL
429
A
ARG
430
n
13
ARG
430
A
HIS
431
n
14
HIS
431
A
ALA
432
n
15
ALA
432
A
PRO
433
n
16
PRO
433
A
ASN
434
n
17
ASN
434
A
GLY
435
n
18
GLY
435
A
ARG
436
n
19
ARG
436
A
PRO
437
n
20
PRO
437
A
PHE
438
n
21
PHE
438
A
PHE
439
n
22
PHE
439
A
ILE
440
n
23
ILE
440
A
ASP
441
n
24
ASP
441
A
HIS
442
n
25
HIS
442
A
ASN
443
n
26
ASN
443
A
THR
444
n
27
THR
444
A
LYS
445
n
28
LYS
445
A
THR
446
n
29
THR
446
A
THR
447
n
30
THR
447
A
THR
448
n
31
THR
448
A
TRP
449
n
32
TRP
449
A
GLU
450
n
33
GLU
450
A
ASP
451
n
34
ASP
451
A
PRO
452
n
35
PRO
452
A
ARG
453
n
36
ARG
453
A
LEU
454
n
37
LEU
454
A
n
38
455
A
ALA
418
n
1
ALA
1
B
MET
419
n
2
MET
2
B
GLY
420
n
3
GLY
3
B
SER
421
n
4
SER
4
B
PHE
422
n
5
PHE
422
B
LEU
423
n
6
LEU
423
B
PRO
424
n
7
PRO
424
B
LYS
425
n
8
LYS
425
B
GLY
426
n
9
GLY
426
B
TRP
427
n
10
TRP
427
B
GLU
428
n
11
GLU
428
B
VAL
429
n
12
VAL
429
B
ARG
430
n
13
ARG
430
B
HIS
431
n
14
HIS
431
B
ALA
432
n
15
ALA
432
B
PRO
433
n
16
PRO
433
B
ASN
434
n
17
ASN
434
B
GLY
435
n
18
GLY
435
B
ARG
436
n
19
ARG
436
B
PRO
437
n
20
PRO
437
B
PHE
438
n
21
PHE
438
B
PHE
439
n
22
PHE
439
B
ILE
440
n
23
ILE
440
B
ASP
441
n
24
ASP
441
B
HIS
442
n
25
HIS
442
B
ASN
443
n
26
ASN
443
B
THR
444
n
27
THR
444
B
LYS
445
n
28
LYS
445
B
THR
446
n
29
THR
446
B
THR
447
n
30
THR
447
B
THR
448
n
31
THR
448
B
TRP
449
n
32
TRP
449
B
GLU
450
n
33
GLU
450
B
ASP
451
n
34
ASP
451
B
PRO
452
n
35
PRO
452
B
ARG
453
n
36
ARG
453
B
LEU
454
n
37
LEU
454
B
n
38
455
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
430
A
N
ARG
13
A
O
PHE
438
A
O
PHE
21
A
N
PHE
439
A
N
PHE
22
A
O
THR
448
A
O
THR
31
B
N
ARG
430
B
N
ARG
13
B
O
PHE
438
B
O
PHE
21
B
N
PHE
439
B
N
PHE
22
B
O
THR
448
B
O
THR
31
1
B
ARG
436
B
ARG
19
1
B
ARG
436
B
ARG
19
1
B
ARG
436
B
ARG
19
1
A
HOH
524
C
HOH
1
A
HOH
528
C
HOH
1
A
LYS
455
A
LYS
38
1
Y
1
B
LYS
455
B
LYS
38
1
Y
1
B
B
HD21
HG2
ASN
ARG
434
436
1.08
B
1
A
A
O
O
HOH
HOH
538
544
2.17
1
B
B
O
O
HOH
HOH
538
548
2.19
1
B
B
O
O
HOH
HOH
527
546
2.19
1
-3.98
0.50
120.30
116.32
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
436
436
436
C
C
C
N
1
B
B
CZ
NH2
ARG
ARG
436
436
-0.167
0.013
1.326
1.159
B
B
N
1
A
A
O
O
HOH
HOH
540
540
1.97
1_555
5_653
265.740
27.4254
8.280
0.1997
0.1812
0.1822
1.1020
32.7130
1806
34404
36210
4.9900
99.8200
1.000
0.030
0.8829
0.1000
1
1.340
MOLECULAR REPLACEMENT
18.6300
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
1.1020
32.7130
106
716
0
0
610
0.010
657
1.403
895
0.063
87
0.009
117
10.869
243
0.2133
0.2009
1.1317
115
2584
2699
13
99.0000
0.1780
0.1866
1.1650
136
2609
2745
13
100.0000
0.1994
0.1886
1.2026
141
2588
2729
13
100.0000
0.2414
0.1896
1.2456
143
2603
2746
13
100.0000
0.2385
0.1913
1.2955
125
2629
2754
13
100.0000
0.2364
0.1799
1.3545
147
2591
2738
13
100.0000
0.1976
0.1768
1.4259
133
2646
2779
13
100.0000
0.1821
0.1841
1.5152
135
2612
2747
13
100.0000
0.2239
0.1739
1.6322
133
2657
2790
13
100.0000
0.2348
0.1721
1.7964
158
2629
2787
13
100.0000
0.1722
0.1636
2.0563
148
2672
2820
13
100.0000
0.1958
0.1764
2.5906
142
2717
2859
13
100.0000
0.1940
0.1907
32.7277
150
2867
3017
13
100.0000
1.1
32.7
4N7F
36280
36262
1
95.0
1.10
1.14
1
98.9
1.14
1.18
1
100
1.18
1.24
1
100
1.24
1.30
1
100
1.30
1.39
1
100
1.39
1.49
1
100
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.3_1479
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
BALBES
Crystal structure of 3rd WW domain of human Nedd4-1
1
N
N
1
N
N
2
N
N
2
N
N
PROTEIN BINDING
beta sheet, WW domain, target binding, proline rich region, cytosolic, PROTEIN BINDING
NEDD4_HUMAN
UNP
1
841
P46934
FLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK
841
874
4N7F
422
455
P46934
A
1
5
38
841
874
4N7F
422
455
P46934
B
1
5
38
1
expression tag
ALA
1
4N7F
A
P46934
UNP
1
1
expression tag
MET
2
4N7F
A
P46934
UNP
2
1
expression tag
GLY
3
4N7F
A
P46934
UNP
3
1
expression tag
SER
4
4N7F
A
P46934
UNP
4
2
expression tag
ALA
1
4N7F
B
P46934
UNP
1
2
expression tag
MET
2
4N7F
B
P46934
UNP
2
2
expression tag
GLY
3
4N7F
B
P46934
UNP
3
2
expression tag
SER
4
4N7F
B
P46934
UNP
4
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TRP
427
A
TRP
10
A
HIS
431
A
HIS
14
A
PRO
437
A
PRO
20
A
ASP
441
A
ASP
24
A
THR
446
A
THR
29
A
THR
448
A
THR
31
B
TRP
427
B
TRP
10
B
HIS
431
B
HIS
14
B
PRO
437
B
PRO
20
B
ASP
441
B
ASP
24
B
THR
446
B
THR
29
B
THR
448
B
THR
31
91
P 41 2 2