0.025719
0.014849
0.000000
0.000000
0.029698
0.000000
0.000000
0.000000
0.020001
0.00000
0.00000
0.00000
Qi, S.
O'Hayre, M.
Gutkind, J.S.
Hurley, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
38.882
38.882
49.997
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C H5 N3
59.070
GUANIDINE
non-polymer
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
N
N
76
N
N
N
77
N
N
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
C
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
N
N
103
N
C
N
104
N
C
N
105
N
O
N
106
N
O
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
N
N
113
S
C
N
114
N
C
N
115
N
O
N
116
N
C
Y
117
N
C
Y
118
N
N
Y
119
N
C
Y
120
N
C
Y
121
N
N
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
S
C
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
N
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
S
N
212
N
C
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
Y
230
N
C
Y
231
N
C
Y
232
N
C
Y
233
N
C
Y
234
N
C
Y
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
N
270
N
O
N
271
N
O
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
R
C
N
284
N
O
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
N
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
N
334
N
O
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
C
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
doub
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
Y
116
N
sing
Y
117
N
doub
Y
118
N
doub
N
119
N
sing
Y
120
N
sing
N
121
N
sing
Y
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
doub
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
Y
224
N
doub
Y
225
N
sing
Y
226
N
sing
N
227
N
sing
Y
228
N
doub
N
229
N
sing
Y
230
N
doub
N
231
N
sing
Y
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
doub
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
Y
293
N
doub
Y
294
N
sing
Y
295
N
sing
N
296
N
sing
Y
297
N
doub
Y
298
N
sing
Y
299
N
sing
N
300
N
sing
Y
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
N
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
289
4743
4752
10.1074/jbc.M113.527473
24379409
Structural and biochemical basis for ubiquitin ligase recruitment by arrestin-related domain-containing protein-3 (ARRDC3).
2014
10.2210/pdb4n7h/pdb
pdb_00004n7h
100
1
IMAGE PLATE
2012-11-21
MAR scanner 300 mm plate
SINGLE WAVELENGTH
M
x-ray
1
1.00000
1.0
22-ID
APS
1.00000
SYNCHROTRON
APS BEAMLINE 22-ID
4261.756
E3 ubiquitin-protein ligase NEDD4
3rd WW domain (UNP residues 840-872)
1
man
polymer
1416.554
Arrestin domain-containing protein 3
1st PPXY Motif (UNP residues 342-354)
1
syn
polymer
59.070
GUANIDINE
2
syn
non-polymer
18.015
water
31
nat
water
Cell proliferation-inducing gene 53 protein, Neural precursor cell expressed developmentally down-regulated protein 4, NEDD-4
TBP-2-like inducible membrane protein, TLIMP
no
no
AMGSGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPR
AMGSGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPR
A
polypeptide(L)
no
no
RPEAPPSYAEVVT
RPEAPPSYAEVVT
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
KIAA0093, NEDD4, NEDD4-1, PIG53
9606
Homo sapiens
469008
Escherichia coli
Bl21(DE3)
plasmid
pGST-parallel2
1
1.94
36.64
VAPOR DIFFUSION, HANGING DROP
8.0
0.35M (NH4)SO4, 100mM Tris-HCl 8.0, 100mM Guanidine-HCl, VAPOR DIFFUSION, HANGING DROP, temperature 294K
294
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Data collection
Database references
Derived calculations
1
0
2014-01-08
1
1
2014-02-05
1
2
2014-10-08
1
3
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-10-15
REL
REL
GAI
GUANIDINE
HOH
water
9606
human
Homo sapiens
sample
GAI
1
3
GAI
GAI
501
A
GAI
2
3
GAI
GAI
502
A
HOH
2
4
HOH
HOH
601
A
HOH
3
4
HOH
HOH
602
A
HOH
4
4
HOH
HOH
603
A
HOH
6
4
HOH
HOH
604
A
HOH
8
4
HOH
HOH
605
A
HOH
9
4
HOH
HOH
606
A
HOH
10
4
HOH
HOH
607
A
HOH
11
4
HOH
HOH
608
A
HOH
12
4
HOH
HOH
609
A
HOH
13
4
HOH
HOH
610
A
HOH
16
4
HOH
HOH
611
A
HOH
17
4
HOH
HOH
612
A
HOH
19
4
HOH
HOH
613
A
HOH
20
4
HOH
HOH
614
A
HOH
23
4
HOH
HOH
615
A
HOH
24
4
HOH
HOH
616
A
HOH
27
4
HOH
HOH
617
A
HOH
31
4
HOH
HOH
618
A
HOH
34
4
HOH
HOH
619
A
HOH
44
4
HOH
HOH
620
A
HOH
45
4
HOH
HOH
621
A
HOH
5
4
HOH
HOH
401
B
HOH
7
4
HOH
HOH
402
B
HOH
14
4
HOH
HOH
403
B
HOH
15
4
HOH
HOH
404
B
HOH
22
4
HOH
HOH
405
B
HOH
26
4
HOH
HOH
406
B
HOH
28
4
HOH
HOH
407
B
HOH
35
4
HOH
HOH
408
B
HOH
36
4
HOH
HOH
409
B
HOH
46
4
HOH
HOH
410
B
n
1
417
A
n
2
418
A
n
3
419
A
n
4
420
A
GLY
421
n
5
GLY
421
A
PHE
422
n
6
PHE
422
A
LEU
423
n
7
LEU
423
A
PRO
424
n
8
PRO
424
A
LYS
425
n
9
LYS
425
A
GLY
426
n
10
GLY
426
A
TRP
427
n
11
TRP
427
A
GLU
428
n
12
GLU
428
A
VAL
429
n
13
VAL
429
A
ARG
430
n
14
ARG
430
A
HIS
431
n
15
HIS
431
A
ALA
432
n
16
ALA
432
A
PRO
433
n
17
PRO
433
A
ASN
434
n
18
ASN
434
A
GLY
435
n
19
GLY
435
A
ARG
436
n
20
ARG
436
A
PRO
437
n
21
PRO
437
A
PHE
438
n
22
PHE
438
A
PHE
439
n
23
PHE
439
A
ILE
440
n
24
ILE
440
A
ASP
441
n
25
ASP
441
A
HIS
442
n
26
HIS
442
A
ASN
443
n
27
ASN
443
A
THR
444
n
28
THR
444
A
LYS
445
n
29
LYS
445
A
THR
446
n
30
THR
446
A
THR
447
n
31
THR
447
A
THR
448
n
32
THR
448
A
TRP
449
n
33
TRP
449
A
GLU
450
n
34
GLU
450
A
ASP
451
n
35
ASP
451
A
PRO
452
n
36
PRO
452
A
ARG
453
n
37
ARG
453
A
n
1
342
B
n
2
343
B
GLU
344
n
3
GLU
344
B
ALA
345
n
4
ALA
345
B
PRO
346
n
5
PRO
346
B
PRO
347
n
6
PRO
347
B
SER
348
n
7
SER
348
B
TYR
349
n
8
TYR
349
B
ALA
350
n
9
ALA
350
B
GLU
351
n
10
GLU
351
B
VAL
352
n
11
VAL
352
B
n
12
353
B
n
13
354
B
author_and_software_defined_assembly
PISA
2
dimeric
1010
-5
3280
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
428
A
N
GLU
12
A
O
ILE
440
A
O
ILE
24
A
N
PHE
439
A
N
PHE
23
A
O
THR
448
A
O
THR
32
1
A
GAI
501
C
GAI
1
A
GAI
501
C
GAI
1
A
HOH
615
E
HOH
1
A
ALA
417
A
ALA
1
1
Y
1
A
MET
418
A
MET
2
1
Y
1
A
GLY
419
A
GLY
3
1
Y
1
A
SER
420
A
SER
4
1
Y
1
B
ARG
342
B
ARG
1
1
Y
1
B
PRO
343
B
PRO
2
1
Y
1
B
VAL
353
B
VAL
12
1
Y
1
B
THR
354
B
THR
13
1
Y
71.130
29.4486
16.580
0.2331
0.1888
0.1907
1.6980
33.6730
235
4874
5109
4.6000
99.6100
1.000
0.510
0.7813
0.1900
1
1.370
26.0500
0.9000
1.1100
ML
FLAT BULK SOLVENT MODEL
1.6980
33.6730
31
385
8
0
346
0.011
366
1.291
498
0.049
47
0.008
68
15.743
130
0.2663
0.1933
2.1396
112
2395
2507
2
100.0000
0.2249
0.1877
33.6794
123
2479
2602
2
99.0000
26.010
1.700
50.000
4N7H
5129
0.068
1.178
1
24.500
13.300
99.600
0.210
1.700
1.760
508
1.233
1
11.100
99.400
0.174
1.760
1.830
485
1.201
1
13.400
99.800
0.145
1.830
1.910
514
1.223
1
14.000
100.000
0.118
1.910
2.020
498
1.242
1
13.900
100.000
0.105
2.020
2.140
506
1.218
1
14.100
100.000
0.098
2.140
2.310
499
1.134
1
13.800
100.000
0.093
2.310
2.540
516
1.113
1
14.000
100.000
0.081
2.540
2.910
516
1.149
1
13.800
99.800
0.063
2.910
3.660
525
1.105
1
13.400
99.600
0.055
3.660
50.000
562
1.179
1
11.800
97.900
data reduction
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
DENZO
program
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
SCALEPACK
program
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.8.3_1479
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
Crystal Structure of the Complex of 3rd WW domain of Human Nedd4 and 1st PPXY Motif of ARRDC3
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
B
SER
348
B
SER
7
HELX_P
B
VAL
352
B
VAL
11
5
1
5
PROTEIN BINDING
ww domain, Beta sheet, PPXY motif, PROTEIN BINDING
NEDD4_HUMAN
UNP
1
840
P46934
GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPR
ARRD3_HUMAN
UNP
2
342
Q96B67
RPEAPPSYAEVVT
840
872
4N7H
421
453
P46934
A
1
5
37
342
354
4N7H
342
354
Q96B67
B
2
1
13
1
expression tag
ALA
417
4N7H
A
P46934
UNP
1
1
expression tag
MET
418
4N7H
A
P46934
UNP
2
1
expression tag
GLY
419
4N7H
A
P46934
UNP
3
1
expression tag
SER
420
4N7H
A
P46934
UNP
4
3
anti-parallel
anti-parallel
A
TRP
427
A
TRP
11
A
HIS
431
A
HIS
15
A
PRO
437
A
PRO
21
A
ASP
441
A
ASP
25
A
THR
446
A
THR
30
A
THR
448
A
THR
32
BINDING SITE FOR RESIDUE GAI A 501
A
GAI
501
Software
9
BINDING SITE FOR RESIDUE GAI A 502
A
GAI
502
Software
5
A
TRP
427
A
TRP
11
9
4_555
A
TRP
427
A
TRP
11
9
1_555
A
ASP
441
A
ASP
25
9
1_555
A
ASP
441
A
ASP
25
9
4_555
A
THR
446
A
THR
30
9
4_555
A
THR
446
A
THR
30
9
1_555
A
THR
447
A
THR
31
9
1_555
A
THR
447
A
THR
31
9
4_555
A
THR
448
A
THR
32
9
4_555
A
ARG
430
A
ARG
14
5
1_555
A
HIS
431
A
HIS
15
5
1_555
A
ASP
451
A
ASP
35
5
2_654
A
HOH
602
E
HOH
5
1_555
A
HOH
613
E
HOH
5
1_555
154
P 32 2 1