0.007584 0.000000 0.000828 0.000000 0.021843 0.000000 0.000000 0.000000 0.022309 0.000000 0.000000 0.000000 Abskharon, R.N.N. Giachin, G. Wohlkonig, A. Soror, S.H. Pardon, E. Legname, G. Steyaert, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 96.230 90.000 131.857 45.781 45.092 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N N Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US J.Am.Chem.Soc. JACSAT 0004 0002-7863 136 937 944 10.1021/ja407527p 24400836 Probing the N-Terminal beta-Sheet Conversion in the Crystal Structure of the Human Prion Protein Bound to a Nanobody. 2014 10.2210/pdb4n9o/pdb pdb_00004n9o 100 1 CCD 2010-07-22 ADSC QUANTUM 315r double crystal monochromator SINGLE WAVELENGTH M x-ray 1 1.0000 1.0 BM30A ESRF 1.0000 SYNCHROTRON ESRF BEAMLINE BM30A 16168.997 Major prion protein C-terminal residues 90-231 1 man polymer 14248.748 Nanobody Nb484 Nb484 1 man polymer 18.015 water 171 nat water PrP, ASCR, PrP27-30, PrP33-35C no no GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEY SNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSS GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEY SNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSS A polypeptide(L) no no AAQLQESGGGLVQPGGSLRLSCAASGRTFSSYNMGWFRQAPGKGREFVASITSSGDKSDYTDSVKGRFTISRDNAKNTMY LQMNNLKPEDTATYYCARGLGIYIIRARGGYDHWGQGTQVTVSSHHHHHH AAQLQESGGGLVQPGGSLRLSCAASGRTFSSYNMGWFRQAPGKGREFVASITSSGDKSDYTDSVKGRFTISRDNAKNTMY LQMNNLKPEDTATYYCARGLGIYIIRARGGYDHWGQGTQVTVSSHHHHHH B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample PRNP, PRIP, PRP 9606 Homo sapiens 562 Escherichia coli sample 9844 Lama glama 562 Escherichia coli 1 2.22 44.69 VAPOR DIFFUSION, SITTING DROP 7.0 0.1 M HEPES-Na pH 7, 15% PEG20000, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Database references Data collection Database references Refinement description 1 0 2014-01-22 1 1 2014-02-05 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession RCSB Y RCSB 2013-10-21 REL REL HOH water 2W9E PDB experimental model HOH 1 3 HOH HOH 301 A HOH 2 3 HOH HOH 302 A HOH 3 3 HOH HOH 303 A HOH 6 3 HOH HOH 304 A HOH 7 3 HOH HOH 305 A HOH 8 3 HOH HOH 306 A HOH 9 3 HOH HOH 307 A HOH 11 3 HOH HOH 308 A HOH 15 3 HOH HOH 309 A HOH 18 3 HOH HOH 310 A HOH 19 3 HOH HOH 311 A HOH 20 3 HOH HOH 312 A HOH 21 3 HOH HOH 313 A HOH 22 3 HOH HOH 314 A HOH 26 3 HOH HOH 315 A HOH 30 3 HOH HOH 316 A HOH 31 3 HOH HOH 317 A HOH 32 3 HOH HOH 318 A HOH 33 3 HOH HOH 319 A HOH 37 3 HOH HOH 320 A HOH 38 3 HOH HOH 321 A HOH 40 3 HOH HOH 322 A HOH 43 3 HOH HOH 323 A HOH 45 3 HOH HOH 324 A HOH 47 3 HOH HOH 325 A HOH 49 3 HOH HOH 326 A HOH 52 3 HOH HOH 327 A HOH 56 3 HOH HOH 328 A HOH 58 3 HOH HOH 329 A HOH 59 3 HOH HOH 330 A HOH 60 3 HOH HOH 331 A HOH 62 3 HOH HOH 332 A HOH 63 3 HOH HOH 333 A HOH 64 3 HOH HOH 334 A HOH 65 3 HOH HOH 335 A HOH 66 3 HOH HOH 336 A HOH 67 3 HOH HOH 337 A HOH 71 3 HOH HOH 338 A HOH 74 3 HOH HOH 339 A HOH 75 3 HOH HOH 340 A HOH 76 3 HOH HOH 341 A HOH 77 3 HOH HOH 342 A HOH 79 3 HOH HOH 343 A HOH 80 3 HOH HOH 344 A HOH 82 3 HOH HOH 345 A HOH 83 3 HOH HOH 346 A HOH 87 3 HOH HOH 347 A HOH 90 3 HOH HOH 348 A HOH 91 3 HOH HOH 349 A HOH 92 3 HOH HOH 350 A HOH 93 3 HOH HOH 351 A HOH 94 3 HOH HOH 352 A HOH 96 3 HOH HOH 353 A HOH 99 3 HOH HOH 354 A HOH 104 3 HOH HOH 355 A HOH 106 3 HOH HOH 356 A HOH 109 3 HOH HOH 357 A HOH 113 3 HOH HOH 358 A HOH 115 3 HOH HOH 359 A HOH 117 3 HOH HOH 360 A HOH 118 3 HOH HOH 361 A HOH 119 3 HOH HOH 362 A HOH 120 3 HOH HOH 363 A HOH 125 3 HOH HOH 364 A HOH 126 3 HOH HOH 365 A HOH 128 3 HOH HOH 366 A HOH 131 3 HOH HOH 367 A HOH 132 3 HOH HOH 368 A HOH 137 3 HOH HOH 369 A HOH 138 3 HOH HOH 370 A HOH 147 3 HOH HOH 371 A HOH 148 3 HOH HOH 372 A HOH 150 3 HOH HOH 373 A HOH 154 3 HOH HOH 374 A HOH 155 3 HOH HOH 375 A HOH 157 3 HOH HOH 376 A HOH 161 3 HOH HOH 377 A HOH 162 3 HOH HOH 378 A HOH 163 3 HOH HOH 379 A HOH 164 3 HOH HOH 380 A HOH 165 3 HOH HOH 381 A HOH 168 3 HOH HOH 382 A HOH 170 3 HOH HOH 383 A HOH 171 3 HOH HOH 384 A HOH 4 3 HOH HOH 201 B HOH 5 3 HOH HOH 202 B HOH 10 3 HOH HOH 203 B HOH 12 3 HOH HOH 204 B HOH 13 3 HOH HOH 205 B HOH 14 3 HOH HOH 206 B HOH 16 3 HOH HOH 207 B HOH 17 3 HOH HOH 208 B HOH 23 3 HOH HOH 209 B HOH 24 3 HOH HOH 210 B HOH 25 3 HOH HOH 211 B HOH 27 3 HOH HOH 212 B HOH 28 3 HOH HOH 213 B HOH 29 3 HOH HOH 214 B HOH 34 3 HOH HOH 215 B HOH 35 3 HOH HOH 216 B HOH 36 3 HOH HOH 217 B HOH 39 3 HOH HOH 218 B HOH 41 3 HOH HOH 219 B HOH 42 3 HOH HOH 220 B HOH 44 3 HOH HOH 221 B HOH 46 3 HOH HOH 222 B HOH 48 3 HOH HOH 223 B HOH 50 3 HOH HOH 224 B HOH 51 3 HOH HOH 225 B HOH 53 3 HOH HOH 226 B HOH 54 3 HOH HOH 227 B HOH 55 3 HOH HOH 228 B HOH 57 3 HOH HOH 229 B HOH 61 3 HOH HOH 230 B HOH 68 3 HOH HOH 231 B HOH 69 3 HOH HOH 232 B HOH 70 3 HOH HOH 233 B HOH 72 3 HOH HOH 234 B HOH 73 3 HOH HOH 235 B HOH 78 3 HOH HOH 236 B HOH 81 3 HOH HOH 237 B HOH 84 3 HOH HOH 238 B HOH 85 3 HOH HOH 239 B HOH 86 3 HOH HOH 240 B HOH 88 3 HOH HOH 241 B HOH 89 3 HOH HOH 242 B HOH 95 3 HOH HOH 243 B HOH 97 3 HOH HOH 244 B HOH 98 3 HOH HOH 245 B HOH 100 3 HOH HOH 246 B HOH 101 3 HOH HOH 247 B HOH 102 3 HOH HOH 248 B HOH 103 3 HOH HOH 249 B HOH 105 3 HOH HOH 250 B HOH 107 3 HOH HOH 251 B HOH 108 3 HOH HOH 252 B HOH 110 3 HOH HOH 253 B HOH 111 3 HOH HOH 254 B HOH 112 3 HOH HOH 255 B HOH 114 3 HOH HOH 256 B HOH 116 3 HOH HOH 257 B HOH 121 3 HOH HOH 258 B HOH 122 3 HOH HOH 259 B HOH 123 3 HOH HOH 260 B HOH 124 3 HOH HOH 261 B HOH 127 3 HOH HOH 262 B HOH 129 3 HOH HOH 263 B HOH 130 3 HOH HOH 264 B HOH 133 3 HOH HOH 265 B HOH 134 3 HOH HOH 266 B HOH 135 3 HOH HOH 267 B HOH 136 3 HOH HOH 268 B HOH 139 3 HOH HOH 269 B HOH 140 3 HOH HOH 270 B HOH 141 3 HOH HOH 271 B HOH 142 3 HOH HOH 272 B HOH 143 3 HOH HOH 273 B HOH 144 3 HOH HOH 274 B HOH 145 3 HOH HOH 275 B HOH 146 3 HOH HOH 276 B HOH 149 3 HOH HOH 277 B HOH 151 3 HOH HOH 278 B HOH 152 3 HOH HOH 279 B HOH 153 3 HOH HOH 280 B HOH 156 3 HOH HOH 281 B HOH 158 3 HOH HOH 282 B HOH 159 3 HOH HOH 283 B HOH 160 3 HOH HOH 284 B HOH 166 3 HOH HOH 285 B HOH 167 3 HOH HOH 286 B HOH 169 3 HOH HOH 287 B 57.150 2.500 2.500 25.180 25.180 Phaser MODE: MR_AUTO n 1 90 A n 2 91 A n 3 92 A n 4 93 A n 5 94 A n 6 95 A n 7 96 A n 8 97 A n 9 98 A n 10 99 A n 11 100 A n 12 101 A n 13 102 A n 14 103 A n 15 104 A n 16 105 A n 17 106 A n 18 107 A n 19 108 A n 20 109 A n 21 110 A n 22 111 A n 23 112 A n 24 113 A n 25 114 A n 26 115 A n 27 116 A n 28 117 A ALA 118 n 29 ALA 118 A GLY 119 n 30 GLY 119 A ALA 120 n 31 ALA 120 A VAL 121 n 32 VAL 121 A VAL 122 n 33 VAL 122 A GLY 123 n 34 GLY 123 A GLY 124 n 35 GLY 124 A LEU 125 n 36 LEU 125 A GLY 126 n 37 GLY 126 A GLY 127 n 38 GLY 127 A TYR 128 n 39 TYR 128 A MET 129 n 40 MET 129 A LEU 130 n 41 LEU 130 A GLY 131 n 42 GLY 131 A SER 132 n 43 SER 132 A ALA 133 n 44 ALA 133 A MET 134 n 45 MET 134 A SER 135 n 46 SER 135 A ARG 136 n 47 ARG 136 A PRO 137 n 48 PRO 137 A ILE 138 n 49 ILE 138 A ILE 139 n 50 ILE 139 A HIS 140 n 51 HIS 140 A PHE 141 n 52 PHE 141 A GLY 142 n 53 GLY 142 A SER 143 n 54 SER 143 A ASP 144 n 55 ASP 144 A TYR 145 n 56 TYR 145 A GLU 146 n 57 GLU 146 A ASP 147 n 58 ASP 147 A ARG 148 n 59 ARG 148 A TYR 149 n 60 TYR 149 A TYR 150 n 61 TYR 150 A ARG 151 n 62 ARG 151 A GLU 152 n 63 GLU 152 A ASN 153 n 64 ASN 153 A MET 154 n 65 MET 154 A HIS 155 n 66 HIS 155 A ARG 156 n 67 ARG 156 A TYR 157 n 68 TYR 157 A PRO 158 n 69 PRO 158 A ASN 159 n 70 ASN 159 A GLN 160 n 71 GLN 160 A VAL 161 n 72 VAL 161 A TYR 162 n 73 TYR 162 A TYR 163 n 74 TYR 163 A ARG 164 n 75 ARG 164 A PRO 165 n 76 PRO 165 A MET 166 n 77 MET 166 A ASP 167 n 78 ASP 167 A GLU 168 n 79 GLU 168 A TYR 169 n 80 TYR 169 A SER 170 n 81 SER 170 A ASN 171 n 82 ASN 171 A GLN 172 n 83 GLN 172 A ASN 173 n 84 ASN 173 A ASN 174 n 85 ASN 174 A PHE 175 n 86 PHE 175 A VAL 176 n 87 VAL 176 A HIS 177 n 88 HIS 177 A ASP 178 n 89 ASP 178 A CYS 179 n 90 CYS 179 A VAL 180 n 91 VAL 180 A ASN 181 n 92 ASN 181 A ILE 182 n 93 ILE 182 A THR 183 n 94 THR 183 A ILE 184 n 95 ILE 184 A LYS 185 n 96 LYS 185 A GLN 186 n 97 GLN 186 A HIS 187 n 98 HIS 187 A THR 188 n 99 THR 188 A VAL 189 n 100 VAL 189 A THR 190 n 101 THR 190 A THR 191 n 102 THR 191 A THR 192 n 103 THR 192 A THR 193 n 104 THR 193 A LYS 194 n 105 LYS 194 A GLY 195 n 106 GLY 195 A GLU 196 n 107 GLU 196 A ASN 197 n 108 ASN 197 A PHE 198 n 109 PHE 198 A THR 199 n 110 THR 199 A GLU 200 n 111 GLU 200 A THR 201 n 112 THR 201 A ASP 202 n 113 ASP 202 A VAL 203 n 114 VAL 203 A LYS 204 n 115 LYS 204 A MET 205 n 116 MET 205 A MET 206 n 117 MET 206 A GLU 207 n 118 GLU 207 A ARG 208 n 119 ARG 208 A VAL 209 n 120 VAL 209 A VAL 210 n 121 VAL 210 A GLU 211 n 122 GLU 211 A GLN 212 n 123 GLN 212 A MET 213 n 124 MET 213 A CYS 214 n 125 CYS 214 A ILE 215 n 126 ILE 215 A THR 216 n 127 THR 216 A GLN 217 n 128 GLN 217 A TYR 218 n 129 TYR 218 A GLU 219 n 130 GLU 219 A ARG 220 n 131 ARG 220 A GLU 221 n 132 GLU 221 A SER 222 n 133 SER 222 A GLN 223 n 134 GLN 223 A ALA 224 n 135 ALA 224 A n 136 225 A n 137 226 A n 138 227 A n 139 228 A n 140 229 A n 141 230 A n 142 231 A ALA 1 n 1 ALA 1 B ALA 2 n 2 ALA 2 B GLN 3 n 3 GLN 3 B LEU 4 n 4 LEU 4 B GLN 5 n 5 GLN 5 B GLU 6 n 6 GLU 6 B SER 7 n 7 SER 7 B GLY 8 n 8 GLY 8 B GLY 9 n 9 GLY 9 B GLY 10 n 10 GLY 10 B LEU 11 n 11 LEU 11 B VAL 12 n 12 VAL 12 B GLN 13 n 13 GLN 13 B PRO 14 n 14 PRO 14 B GLY 15 n 15 GLY 15 B GLY 16 n 16 GLY 16 B SER 17 n 17 SER 17 B LEU 18 n 18 LEU 18 B ARG 19 n 19 ARG 19 B LEU 20 n 20 LEU 20 B SER 21 n 21 SER 21 B CYS 22 n 22 CYS 22 B ALA 23 n 23 ALA 23 B ALA 24 n 24 ALA 24 B SER 25 n 25 SER 25 B GLY 26 n 26 GLY 26 B ARG 27 n 27 ARG 27 B THR 28 n 28 THR 28 B PHE 29 n 29 PHE 29 B SER 30 n 30 SER 30 B SER 31 n 31 SER 31 B TYR 32 n 32 TYR 32 B ASN 33 n 33 ASN 33 B MET 34 n 34 MET 34 B GLY 35 n 35 GLY 35 B TRP 36 n 36 TRP 36 B PHE 37 n 37 PHE 37 B ARG 38 n 38 ARG 38 B GLN 39 n 39 GLN 39 B ALA 40 n 40 ALA 40 B PRO 41 n 41 PRO 41 B GLY 42 n 42 GLY 42 B LYS 43 n 43 LYS 43 B GLY 44 n 44 GLY 44 B ARG 45 n 45 ARG 45 B GLU 46 n 46 GLU 46 B PHE 47 n 47 PHE 47 B VAL 48 n 48 VAL 48 B ALA 49 n 49 ALA 49 B SER 50 n 50 SER 50 B ILE 51 n 51 ILE 51 B THR 52 n 52 THR 52 B SER 53 n 53 SER 53 B SER 54 n 54 SER 54 B GLY 55 n 55 GLY 55 B ASP 56 n 56 ASP 56 B LYS 57 n 57 LYS 57 B SER 58 n 58 SER 58 B ASP 59 n 59 ASP 59 B TYR 60 n 60 TYR 60 B THR 61 n 61 THR 61 B ASP 62 n 62 ASP 62 B SER 63 n 63 SER 63 B VAL 64 n 64 VAL 64 B LYS 65 n 65 LYS 65 B GLY 66 n 66 GLY 66 B ARG 67 n 67 ARG 67 B PHE 68 n 68 PHE 68 B THR 69 n 69 THR 69 B ILE 70 n 70 ILE 70 B SER 71 n 71 SER 71 B ARG 72 n 72 ARG 72 B ASP 73 n 73 ASP 73 B ASN 74 n 74 ASN 74 B ALA 75 n 75 ALA 75 B LYS 76 n 76 LYS 76 B ASN 77 n 77 ASN 77 B THR 78 n 78 THR 78 B MET 79 n 79 MET 79 B TYR 80 n 80 TYR 80 B LEU 81 n 81 LEU 81 B GLN 82 n 82 GLN 82 B MET 83 n 83 MET 83 B ASN 84 n 84 ASN 84 B ASN 85 n 85 ASN 85 B LEU 86 n 86 LEU 86 B LYS 87 n 87 LYS 87 B PRO 88 n 88 PRO 88 B GLU 89 n 89 GLU 89 B ASP 90 n 90 ASP 90 B THR 91 n 91 THR 91 B ALA 92 n 92 ALA 92 B THR 93 n 93 THR 93 B TYR 94 n 94 TYR 94 B TYR 95 n 95 TYR 95 B CYS 96 n 96 CYS 96 B ALA 97 n 97 ALA 97 B ARG 98 n 98 ARG 98 B GLY 99 n 99 GLY 99 B LEU 100 n 100 LEU 100 B GLY 101 n 101 GLY 101 B ILE 102 n 102 ILE 102 B TYR 103 n 103 TYR 103 B ILE 104 n 104 ILE 104 B ILE 105 n 105 ILE 105 B ARG 106 n 106 ARG 106 B ALA 107 n 107 ALA 107 B ARG 108 n 108 ARG 108 B GLY 109 n 109 GLY 109 B GLY 110 n 110 GLY 110 B TYR 111 n 111 TYR 111 B ASP 112 n 112 ASP 112 B HIS 113 n 113 HIS 113 B TRP 114 n 114 TRP 114 B GLY 115 n 115 GLY 115 B GLN 116 n 116 GLN 116 B GLY 117 n 117 GLY 117 B THR 118 n 118 THR 118 B GLN 119 n 119 GLN 119 B VAL 120 n 120 VAL 120 B THR 121 n 121 THR 121 B VAL 122 n 122 VAL 122 B SER 123 n 123 SER 123 B SER 124 n 124 SER 124 B n 125 125 B n 126 126 B n 127 127 B n 128 128 B n 129 129 B n 130 130 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 122 A N VAL 33 A O LEU 125 A O LEU 36 A N MET 129 A N MET 40 A O TYR 163 A O TYR 74 B N GLN 5 B N GLN 5 B O ALA 23 B O ALA 23 B N LEU 18 B N LEU 18 B O MET 83 B O MET 83 B O THR 78 B O THR 78 B N ASP 73 B N ASP 73 B N VAL 12 B N VAL 12 B O THR 121 B O THR 121 B O THR 118 B O THR 118 B N TYR 94 B N TYR 94 B O THR 93 B O THR 93 B N GLN 39 B N GLN 39 B N TRP 36 B N TRP 36 B O ALA 49 B O ALA 49 B N SER 50 B N SER 50 B O ASP 59 B O ASP 59 B N VAL 12 B N VAL 12 B O THR 121 B O THR 121 B O THR 118 B O THR 118 B N TYR 94 B N TYR 94 B N ARG 98 B N ARG 98 B O ASP 112 B O ASP 112 1 A GLY 90 A GLY 1 1 Y 1 A GLN 91 A GLN 2 1 Y 1 A GLY 92 A GLY 3 1 Y 1 A GLY 93 A GLY 4 1 Y 1 A GLY 94 A GLY 5 1 Y 1 A THR 95 A THR 6 1 Y 1 A HIS 96 A HIS 7 1 Y 1 A SER 97 A SER 8 1 Y 1 A GLN 98 A GLN 9 1 Y 1 A TRP 99 A TRP 10 1 Y 1 A ASN 100 A ASN 11 1 Y 1 A LYS 101 A LYS 12 1 Y 1 A PRO 102 A PRO 13 1 Y 1 A SER 103 A SER 14 1 Y 1 A LYS 104 A LYS 15 1 Y 1 A PRO 105 A PRO 16 1 Y 1 A LYS 106 A LYS 17 1 Y 1 A THR 107 A THR 18 1 Y 1 A ASN 108 A ASN 19 1 Y 1 A MET 109 A MET 20 1 Y 1 A LYS 110 A LYS 21 1 Y 1 A HIS 111 A HIS 22 1 Y 1 A MET 112 A MET 23 1 Y 1 A ALA 113 A ALA 24 1 Y 1 A GLY 114 A GLY 25 1 Y 1 A ALA 115 A ALA 26 1 Y 1 A ALA 116 A ALA 27 1 Y 1 A ALA 117 A ALA 28 1 Y 1 A TYR 225 A TYR 136 1 Y 1 A TYR 226 A TYR 137 1 Y 1 A GLN 227 A GLN 138 1 Y 1 A ARG 228 A ARG 139 1 Y 1 A GLY 229 A GLY 140 1 Y 1 A SER 230 A SER 141 1 Y 1 A SER 231 A SER 142 1 Y 1 B HIS 125 B HIS 125 1 Y 1 B HIS 126 B HIS 126 1 Y 1 B HIS 127 B HIS 127 1 Y 1 B HIS 128 B HIS 128 1 Y 1 B HIS 129 B HIS 129 1 Y 1 B HIS 130 B HIS 130 1 Y 1 -3.15 0.50 120.30 117.15 A A A NE CZ NH2 ARG ARG ARG 151 151 151 N 1 -3.29 0.50 120.30 117.01 A A A NE CZ NH1 ARG ARG ARG 164 164 164 N 1 6.27 0.90 118.30 124.57 B B B CB CG OD1 ASP ASP ASP 56 56 56 N 1 -14.57 1.60 100.20 85.63 B B B CG SD CE MET MET MET 83 83 83 N 1 A A CD OE2 GLU GLU 196 196 -0.069 0.011 1.252 1.183 N 1 A A CZ NH2 ARG ARG 220 220 0.085 0.013 1.326 1.411 N 1 A A C O ALA ALA 224 224 -0.154 0.019 1.229 1.075 N 1 B B CD OE1 GLU GLU 89 89 0.122 0.011 1.252 1.374 N 1 B B CD OE2 GLU GLU 89 89 0.102 0.011 1.252 1.354 N 1 B ALA 92 178.26 167.20 69.170 16.7219 6.440 0.0300 0.0000 0.0100 -0.0200 0.0000 -0.0100 0.9650 0.9550 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY 0.1843 0.1497 0.1514 1.5000 24.9300 2137 42305 5.1000 98.3400 0.1913 0.1534 1.000 0.500 0.8918 2.1260 0.0370 0.0688 0.0630 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.0690 0.0630 0.8000 0.8000 1.2000 2W9E MAXIMUM LIKELIHOOD MASK 1.5000 24.9300 171 1981 0 0 1810 0.023 0.019 1861 0.001 0.020 1686 1.939 1.930 2512 0.892 3.000 3866 6.228 5.000 233 30.402 23.263 95 11.780 15.000 310 17.118 15.000 17 0.123 0.200 259 0.011 0.020 2177 0.001 0.020 474 2.578 1.395 926 2.573 1.392 925 2.972 2.094 1155 5.529 3.000 3547 19.241 5.000 62 9.220 5.000 3616 0.2360 0.1660 1.5390 166 2857 3023 20 97.1700 1.500 65.540 4N9O 42399 42399 2.0 2.0 0.058 1 13.800 4.000 98.800 0.240 1.500 1.580 2.800 24907 6092 0.240 1 4.100 97.800 0.168 1.580 1.680 4.000 23853 5779 0.168 1 4.100 98.200 0.123 1.680 1.790 5.400 22456 5455 0.123 1 4.100 98.500 0.090 1.790 1.940 6.500 20942 5111 0.090 1 4.100 98.800 0.064 1.940 2.120 8.800 19258 4727 0.064 1 4.100 99.300 0.056 2.120 2.370 9.700 17313 4289 0.056 1 4.000 99.500 0.055 2.370 2.740 9.700 15153 3794 0.055 1 4.000 99.700 0.045 2.740 3.350 10.700 12582 3225 0.045 1 3.900 99.700 0.043 3.350 4.740 10.900 9589 2516 0.043 1 3.800 99.400 0.047 4.740 25.185 9.500 5636 1411 0.047 1 4.000 98.100 data reduction Andrew G.W. Leslie andrew@mrc-lmb.cam.ac.uk http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ MOSFLM package data scaling Phil R. Evans pre@mrc-lmb.cam.ac.uk 2010/01/06 Fortran_77 http://www.ccp4.ac.uk/dist/html/scala.html SCALA other 3.3.16 phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Wed Jun 24 14:00:05 2009 http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.1.4 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program data extraction PDB deposit@deposit.rcsb.org April 22, 2011 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.11 Probing the N-terminal beta-sheet conversion in the crystal structure of the human prion protein bound to a Nanobody 1 N N 2 N N 3 N N 3 N N A SER 143 A SER 54 HELX_P A MET 154 A MET 65 1 1 12 A HIS 155 A HIS 66 HELX_P A TYR 157 A TYR 68 5 2 3 A PRO 165 A PRO 76 HELX_P A TYR 169 A TYR 80 5 3 5 A ASN 171 A ASN 82 HELX_P A LYS 194 A LYS 105 1 4 24 A THR 199 A THR 110 HELX_P A ALA 224 A ALA 135 1 5 26 B THR 28 B THR 28 HELX_P B TYR 32 B TYR 32 5 6 5 B LYS 87 B LYS 87 HELX_P B THR 91 B THR 91 5 7 5 B ALA 107 B ALA 107 HELX_P B GLY 109 B GLY 109 5 8 3 disulf 2.041 A CYS 179 A SG CYS 90 1_555 A CYS 214 A SG CYS 125 1_555 disulf 2.164 B CYS 22 B SG CYS 22 1_555 B CYS 96 B SG CYS 96 1_555 MEMBRANE PROTEIN/PROTEIN BINDING Prion-like fold, antibody, nanobody, MEMBRANE PROTEIN-PROTEIN BINDING complex PRIO_HUMAN UNP 1 90 P04156 GQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEY SNQNNFVHDCVNITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSS 4N9O PDB 2 4N9O 90 231 4N9O 90 231 P04156 A 1 1 142 1 130 4N9O 1 130 4N9O B 2 1 130 3 4 6 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A GLY 119 A GLY 30 A VAL 122 A VAL 33 A LEU 125 A LEU 36 A LEU 130 A LEU 41 A TYR 162 A TYR 73 A TYR 163 A TYR 74 B LEU 4 B LEU 4 B SER 7 B SER 7 B LEU 18 B LEU 18 B ALA 24 B ALA 24 B THR 78 B THR 78 B MET 83 B MET 83 B PHE 68 B PHE 68 B ASP 73 B ASP 73 B GLY 10 B GLY 10 B VAL 12 B VAL 12 B THR 118 B THR 118 B VAL 122 B VAL 122 B ALA 92 B ALA 92 B GLY 99 B GLY 99 B MET 34 B MET 34 B GLN 39 B GLN 39 B GLU 46 B GLU 46 B ILE 51 B ILE 51 B SER 58 B SER 58 B TYR 60 B TYR 60 B GLY 10 B GLY 10 B VAL 12 B VAL 12 B THR 118 B THR 118 B VAL 122 B VAL 122 B ALA 92 B ALA 92 B GLY 99 B GLY 99 B TYR 111 B TYR 111 B ASP 112 B ASP 112 5 C 1 2 1