0.011406
0.006586
0.000000
0.000000
0.013171
0.000000
0.000000
0.000000
0.009582
0.00000
0.00000
0.00000
Malojcic, G.
Kahne, D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
87.670
87.670
104.360
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
C
N
237
N
O
N
238
N
C
N
239
N
O
N
240
N
C
N
241
N
C
N
242
N
O
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
Y
262
N
C
Y
263
N
C
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
C
N
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
O
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
R
C
N
312
N
O
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
N
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
N
362
N
O
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
C
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
Y
251
N
doub
Y
252
N
sing
Y
253
N
sing
N
254
N
sing
Y
255
N
doub
N
256
N
sing
Y
257
N
doub
N
258
N
sing
Y
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
Y
320
N
doub
Y
321
N
sing
Y
322
N
sing
N
323
N
sing
Y
324
N
doub
Y
325
N
sing
Y
326
N
sing
N
327
N
sing
Y
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
doub
N
332
N
sing
Y
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
Y
348
N
doub
Y
349
N
sing
Y
350
N
sing
N
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
111
9467
9472
10.1073/pnas.1402746111
24938785
LptE binds to and alters the physical state of LPS to catalyze its assembly at the cell surface.
2014
10.2210/pdb4nhr/pdb
pdb_00004nhr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
100
2
PIXEL
2011-03-25
DECTRIS PILATUS 6M
PIXEL
2011-03-25
DECTRIS PILATUS 6M
si111
SINGLE WAVELENGTH
M
x-ray
1
si111
SINGLE WAVELENGTH
M
x-ray
2
0.97890
1.0
1.0
X25
NSLS
0.97890
SYNCHROTRON
NSLS BEAMLINE X25
X25
NSLS
0.97890
SYNCHROTRON
NSLS BEAMLINE X25
18874.578
LPS-assembly lipoprotein LptE
1
man
polymer
106.120
DI(HYDROXYETHYL)ETHER
1
syn
non-polymer
18.015
water
46
nat
water
Rare lipoprotein B
no
no
MGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEY
QMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTT
DTPALVPR
MGWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEY
QMIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTT
DTPALVPR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K-12
sample
b0641, JW0636, lptE, rlpB
83333
Escherichia coli
562
Escherichia coli
BL21(DE3)
plasmid
pet22b
2
3.07
59.89
3.07
59.89
VAPOR DIFFUSION, SITTING DROP
8.5
100 mM Tris/HOAc pH 8.5, 200 mM KBr, 10% PEG 1000, 10% PEG 8000, VAPOR DIFFUSION, SITTING DROP, temperature 277K
277
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Data collection
Database references
Derived calculations
1
0
2014-07-16
1
1
2024-02-28
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-11-05
REL
REL
PEG
DI(HYDROXYETHYL)ETHER
HOH
water
PEG
1
2
PEG
PEG
301
A
HOH
2
3
HOH
HOH
401
A
HOH
4
3
HOH
HOH
402
A
HOH
5
3
HOH
HOH
403
A
HOH
6
3
HOH
HOH
404
A
HOH
7
3
HOH
HOH
405
A
HOH
8
3
HOH
HOH
406
A
HOH
9
3
HOH
HOH
407
A
HOH
10
3
HOH
HOH
408
A
HOH
11
3
HOH
HOH
409
A
HOH
12
3
HOH
HOH
410
A
HOH
13
3
HOH
HOH
411
A
HOH
14
3
HOH
HOH
412
A
HOH
15
3
HOH
HOH
413
A
HOH
16
3
HOH
HOH
414
A
HOH
17
3
HOH
HOH
415
A
HOH
18
3
HOH
HOH
416
A
HOH
19
3
HOH
HOH
417
A
HOH
20
3
HOH
HOH
418
A
HOH
21
3
HOH
HOH
419
A
HOH
22
3
HOH
HOH
420
A
HOH
23
3
HOH
HOH
421
A
HOH
24
3
HOH
HOH
422
A
HOH
25
3
HOH
HOH
423
A
HOH
26
3
HOH
HOH
424
A
HOH
27
3
HOH
HOH
425
A
HOH
28
3
HOH
HOH
426
A
HOH
29
3
HOH
HOH
427
A
HOH
30
3
HOH
HOH
428
A
HOH
31
3
HOH
HOH
429
A
HOH
32
3
HOH
HOH
430
A
HOH
33
3
HOH
HOH
431
A
HOH
34
3
HOH
HOH
432
A
HOH
35
3
HOH
HOH
433
A
HOH
36
3
HOH
HOH
434
A
HOH
37
3
HOH
HOH
435
A
HOH
38
3
HOH
HOH
436
A
HOH
39
3
HOH
HOH
437
A
HOH
40
3
HOH
HOH
438
A
HOH
41
3
HOH
HOH
439
A
HOH
42
3
HOH
HOH
440
A
HOH
43
3
HOH
HOH
441
A
HOH
44
3
HOH
HOH
442
A
HOH
45
3
HOH
HOH
443
A
HOH
46
3
HOH
HOH
444
A
HOH
1
3
HOH
HOH
445
A
HOH
2
3
HOH
HOH
446
A
n
1
19
A
n
2
20
A
n
3
21
A
n
4
22
A
n
5
23
A
n
6
24
A
n
7
25
A
n
8
26
A
n
9
27
A
n
10
28
A
n
11
29
A
n
12
30
A
n
13
31
A
n
14
32
A
MET
33
n
15
MET
33
A
LYS
34
n
16
LYS
34
A
VAL
35
n
17
VAL
35
A
MET
36
n
18
MET
36
A
ILE
37
n
19
ILE
37
A
LEU
38
n
20
LEU
38
A
ASP
39
n
21
ASP
39
A
SER
40
n
22
SER
40
A
GLY
41
n
23
GLY
41
A
ASP
42
n
24
ASP
42
A
PRO
43
n
25
PRO
43
A
ASN
44
n
26
ASN
44
A
GLY
45
n
27
GLY
45
A
PRO
46
n
28
PRO
46
A
LEU
47
n
29
LEU
47
A
SER
48
n
30
SER
48
A
ARG
49
n
31
ARG
49
A
ALA
50
n
32
ALA
50
A
VAL
51
n
33
VAL
51
A
ARG
52
n
34
ARG
52
A
ASN
53
n
35
ASN
53
A
GLN
54
n
36
GLN
54
A
LEU
55
n
37
LEU
55
A
ARG
56
n
38
ARG
56
A
LEU
57
n
39
LEU
57
A
ASN
58
n
40
ASN
58
A
GLY
59
n
41
GLY
59
A
VAL
60
n
42
VAL
60
A
GLU
61
n
43
GLU
61
A
LEU
62
n
44
LEU
62
A
LEU
63
n
45
LEU
63
A
ASP
64
n
46
ASP
64
A
LYS
65
n
47
LYS
65
A
GLU
66
n
48
GLU
66
A
THR
67
n
49
THR
67
A
THR
68
n
50
THR
68
A
ARG
69
n
51
ARG
69
A
LYS
70
n
52
LYS
70
A
ASP
71
n
53
ASP
71
A
VAL
72
n
54
VAL
72
A
PRO
73
n
55
PRO
73
A
SER
74
n
56
SER
74
A
LEU
75
n
57
LEU
75
A
ARG
76
n
58
ARG
76
A
LEU
77
n
59
LEU
77
A
GLY
78
n
60
GLY
78
A
LYS
79
n
61
LYS
79
A
VAL
80
n
62
VAL
80
A
SER
81
n
63
SER
81
A
ILE
82
n
64
ILE
82
A
ALA
83
n
65
ALA
83
A
LYS
84
n
66
LYS
84
A
ASP
85
n
67
ASP
85
A
THR
86
n
68
THR
86
A
ALA
87
n
69
ALA
87
A
SER
88
n
70
SER
88
A
VAL
89
n
71
VAL
89
A
PHE
90
n
72
PHE
90
A
ARG
91
n
73
ARG
91
A
ASN
92
n
74
ASN
92
A
GLY
93
n
75
GLY
93
A
GLN
94
n
76
GLN
94
A
THR
95
n
77
THR
95
A
ALA
96
n
78
ALA
96
A
GLU
97
n
79
GLU
97
A
TYR
98
n
80
TYR
98
A
GLN
99
n
81
GLN
99
A
MET
100
n
82
MET
100
A
ILE
101
n
83
ILE
101
A
MET
102
n
84
MET
102
A
THR
103
n
85
THR
103
A
VAL
104
n
86
VAL
104
A
ASN
105
n
87
ASN
105
A
ALA
106
n
88
ALA
106
A
THR
107
n
89
THR
107
A
VAL
108
n
90
VAL
108
A
LEU
109
n
91
LEU
109
A
ILE
110
n
92
ILE
110
A
PRO
111
n
93
PRO
111
A
GLY
112
n
94
GLY
112
A
ARG
113
n
95
ARG
113
A
ASP
114
n
96
ASP
114
A
ILE
115
n
97
ILE
115
A
TYR
116
n
98
TYR
116
A
PRO
117
n
99
PRO
117
A
ILE
118
n
100
ILE
118
A
SER
119
n
101
SER
119
A
ALA
120
n
102
ALA
120
A
LYS
121
n
103
LYS
121
A
VAL
122
n
104
VAL
122
A
PHE
123
n
105
PHE
123
A
ARG
124
n
106
ARG
124
A
SER
125
n
107
SER
125
A
PHE
126
n
108
PHE
126
A
PHE
127
n
109
PHE
127
A
ASP
128
n
110
ASP
128
A
ASN
129
n
111
ASN
129
A
PRO
130
n
112
PRO
130
A
GLN
131
n
113
GLN
131
A
MET
132
n
114
MET
132
A
ALA
133
n
115
ALA
133
A
LEU
134
n
116
LEU
134
A
ALA
135
n
117
ALA
135
A
LYS
136
n
118
LYS
136
A
ASP
137
n
119
ASP
137
A
ASN
138
n
120
ASN
138
A
GLU
139
n
121
GLU
139
A
GLN
140
n
122
GLN
140
A
ASP
141
n
123
ASP
141
A
MET
142
n
124
MET
142
A
ILE
143
n
125
ILE
143
A
VAL
144
n
126
VAL
144
A
LYS
145
n
127
LYS
145
A
GLU
146
n
128
GLU
146
A
MET
147
n
129
MET
147
A
TYR
148
n
130
TYR
148
A
ASP
149
n
131
ASP
149
A
ARG
150
n
132
ARG
150
A
ALA
151
n
133
ALA
151
A
ALA
152
n
134
ALA
152
A
GLU
153
n
135
GLU
153
A
GLN
154
n
136
GLN
154
A
LEU
155
n
137
LEU
155
A
ILE
156
n
138
ILE
156
A
ARG
157
n
139
ARG
157
A
LYS
158
n
140
LYS
158
A
LEU
159
n
141
LEU
159
A
PRO
160
n
142
PRO
160
A
SER
161
n
143
SER
161
A
ILE
162
n
144
ILE
162
A
ARG
163
n
145
ARG
163
A
ALA
164
n
146
ALA
164
A
ALA
165
n
147
ALA
165
A
ASP
166
n
148
ASP
166
A
ILE
167
n
149
ILE
167
A
ARG
168
n
150
ARG
168
A
SER
169
n
151
SER
169
A
n
152
170
A
n
153
171
A
n
154
172
A
n
155
173
A
n
156
174
A
n
157
175
A
n
158
176
A
n
159
177
A
n
160
178
A
n
161
179
A
n
162
180
A
n
163
181
A
n
164
182
A
n
165
183
A
n
166
184
A
n
167
185
A
n
168
186
A
8.3896
2.0462
-1.7197
0.9073
0.6741
3.2352
-0.6719
-1.2786
0.8721
0.0072
0.0219
0.8102
-1.6714
0.9303
-0.2226
1.2397
0.4220
-0.3092
0.7832
-0.3556
0.8867
refined
12.4538
38.2693
57.0366
X-RAY DIFFRACTION
4.4091
-1.1383
2.0293
5.7772
3.6278
4.1553
-1.0144
-1.9019
0.5390
1.4241
1.0665
-0.9828
0.6723
2.7852
0.0872
0.8998
0.1471
-0.3366
1.3170
-0.0279
0.8356
refined
24.0269
27.3037
52.8052
X-RAY DIFFRACTION
2.5299
0.4520
2.4379
7.4341
6.2418
6.9910
-0.1982
-0.4706
1.1582
1.6501
0.1890
-1.6139
0.0038
1.3016
-0.6346
1.2757
0.0141
-0.3270
0.8334
-0.0115
1.0841
refined
18.7579
36.5987
54.2677
X-RAY DIFFRACTION
6.9892
1.4525
1.8567
8.7151
-1.8226
1.9462
-0.7238
-1.7517
-0.0046
3.4278
-0.1688
1.3973
2.2426
-0.1696
0.7914
0.9949
0.1045
-0.0621
0.8914
-0.0340
0.5689
refined
14.3502
26.7789
58.0379
X-RAY DIFFRACTION
7.1029
-0.4809
-0.0141
3.2619
-0.4055
6.6190
0.0249
0.2728
-0.7673
-0.5584
-0.4311
0.1966
2.1599
1.0898
0.1640
1.0563
0.4004
-0.1514
0.6487
0.0423
0.5302
refined
20.3349
15.6426
35.7676
X-RAY DIFFRACTION
5.7326
0.7727
-1.1358
6.7255
-1.6517
4.9469
-0.3266
-0.3213
0.2409
0.5987
-0.2006
0.5803
1.2600
-0.7552
0.0541
0.5785
-0.0021
-0.0560
0.7321
-0.1664
0.5326
refined
10.0845
22.5848
47.4270
X-RAY DIFFRACTION
6.3172
-2.6139
-6.8634
8.1827
4.1937
7.7627
1.1136
0.0344
1.5328
0.5898
0.1510
-2.0592
-0.3289
3.7606
-1.0124
0.6559
0.2984
0.0207
1.5602
0.1591
1.0192
refined
30.1090
22.4490
27.6653
X-RAY DIFFRACTION
2.9857
-2.4903
-1.7307
3.7827
5.1022
8.6405
0.8362
0.9753
0.1767
-1.0321
-0.0001
0.3522
-0.5244
0.5942
-0.3850
0.5881
0.0255
-0.0989
0.6855
0.0387
0.5474
refined
22.3587
26.5691
40.3795
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain A and resid 33:37)
X-RAY DIFFRACTION
2
(chain A and resid 38:51)
X-RAY DIFFRACTION
3
(chain A and resid 52:66)
X-RAY DIFFRACTION
4
(chain A and resid 67:82)
X-RAY DIFFRACTION
5
(chain A and resid 83:112)
X-RAY DIFFRACTION
6
(chain A and resid 113:124)
X-RAY DIFFRACTION
7
(chain A and resid 125:143)
X-RAY DIFFRACTION
8
(chain A and resid 144:152)
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
3430
-9
14860
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z+2/3
crystal symmetry operation
0.0000000000
0.0000000000
69.5733333333
A
O
GLU
61
A
O
GLU
43
A
N
LYS
34
A
N
LYS
16
A
N
ILE
37
A
N
ILE
19
A
O
LEU
75
A
O
LEU
57
A
N
SER
88
A
N
SER
70
A
O
ALA
96
A
O
ALA
78
A
N
MET
100
A
N
MET
82
A
O
ARG
124
A
O
ARG
106
1
A
HOH
402
C
HOH
1
A
HOH
437
C
HOH
1
A
MET
19
A
MET
1
1
Y
1
A
GLY
20
A
GLY
2
1
Y
1
A
TRP
21
A
TRP
3
1
Y
1
A
HIS
22
A
HIS
4
1
Y
1
A
LEU
23
A
LEU
5
1
Y
1
A
ARG
24
A
ARG
6
1
Y
1
A
ASP
25
A
ASP
7
1
Y
1
A
THR
26
A
THR
8
1
Y
1
A
THR
27
A
THR
9
1
Y
1
A
GLN
28
A
GLN
10
1
Y
1
A
VAL
29
A
VAL
11
1
Y
1
A
PRO
30
A
PRO
12
1
Y
1
A
SER
31
A
SER
13
1
Y
1
A
THR
32
A
THR
14
1
Y
1
A
ASP
170
A
ASP
152
1
Y
1
A
GLU
171
A
GLU
153
1
Y
1
A
GLU
172
A
GLU
154
1
Y
1
A
GLN
173
A
GLN
155
1
Y
1
A
THR
174
A
THR
156
1
Y
1
A
SER
175
A
SER
157
1
Y
1
A
THR
176
A
THR
158
1
Y
1
A
THR
177
A
THR
159
1
Y
1
A
THR
178
A
THR
160
1
Y
1
A
ASP
179
A
ASP
161
1
Y
1
A
THR
180
A
THR
162
1
Y
1
A
PRO
181
A
PRO
163
1
Y
1
A
ALA
182
A
ALA
164
1
Y
1
A
LEU
183
A
LEU
165
1
Y
1
A
VAL
184
A
VAL
166
1
Y
1
A
PRO
185
A
PRO
167
1
Y
1
A
ARG
186
A
ARG
168
1
Y
1
A
A
O
O
PRO
HOH
111
439
2.08
1
A
A
ND2
O
ASN
HOH
92
423
2.14
1
A
A
O
O
HOH
HOH
406
428
2.16
1
A
A
O
O
HOH
HOH
417
433
2.18
1
A
ASP
71
-99.56
-62.41
1
A
ALA
96
-105.51
-60.90
0.2491
0.2260
0.2272
0.2272
2.340
43.003
496
10481
10481
4.73
99.65
0.33
random
1
0.00
SIRAS
31.06
0.90
1.10
MLHL
FLAT BULK SOLVENT MODEL
2.340
43.003
46
1129
7
0
1076
0.008
1095
1.126
1471
17.439
436
0.038
169
0.005
192
0.3262
0.3026
2.5755
110
2451
100.00
0.3092
0.2771
2.9481
136
2421
100.00
0.2904
0.2582
3.7140
137
2473
100.00
0.2122
0.1982
43.0105
113
2640
99.00
67.66
2.17
61.395
4NHR
10521
10493
0.85
0.7
1
19.3
100
2.34
61.4
1
99.9
data collection
ADSC
Quantum
phasing
SHARP
refinement
PHENIX
(phenix.refine: 1.8.4_1496)
data reduction
MOSFLM
data scaling
SCALA
Crystal structure of the outer membrane lipopolysaccharide transport protein LptE (RlpB)
1
N
N
2
N
N
3
N
N
A
GLY
45
A
GLY
27
HELX_P
A
ASN
58
A
ASN
40
1
1
14
A
ASN
129
A
ASN
111
HELX_P
A
ALA
133
A
ALA
115
5
2
5
A
GLU
139
A
GLU
121
HELX_P
A
LYS
158
A
LYS
140
1
3
20
LIPID BINDING PROTEIN
2-Layer Sandwich, lipopolysaccharide assembly, LptD (Imp), lysine methylation, Gram-negative outer membrane, LIPID BINDING PROTEIN
A
ARG
168
A
ARG
150
1
A
SER
169
A
SER
151
1.85
LPTE_ECOLI
UNP
1
20
P0ADC1
GWHLRDTTQVPSTMKVMILDSGDPNGPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQ
MIMTVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLPSIRAADIRSDEEQTSTTTD
TPA
20
182
4NHR
20
182
P0ADC1
A
1
2
164
1
expression tag
MET
19
4NHR
A
P0ADC1
UNP
1
1
expression tag
LEU
183
4NHR
A
P0ADC1
UNP
165
1
expression tag
VAL
184
4NHR
A
P0ADC1
UNP
166
1
expression tag
PRO
185
4NHR
A
P0ADC1
UNP
167
1
expression tag
ARG
186
4NHR
A
P0ADC1
UNP
168
5
parallel
parallel
anti-parallel
anti-parallel
A
VAL
60
A
VAL
42
A
LEU
62
A
LEU
44
A
LYS
34
A
LYS
16
A
ASP
39
A
ASP
21
A
SER
74
A
SER
56
A
VAL
89
A
VAL
71
A
THR
95
A
THR
77
A
LEU
109
A
LEU
91
A
ILE
115
A
ILE
97
A
PHE
127
A
PHE
109
BINDING SITE FOR RESIDUE PEG A 301
A
PEG
301
Software
2
A
VAL
80
A
VAL
62
2
12_555
A
ILE
82
A
ILE
64
2
1_555
179
P 65 2 2