0.019908
0.011494
0.000000
0.000000
0.022988
0.000000
0.000000
0.000000
0.009650
0.00000
0.00000
0.00000
Davies, D.
Edwards, T.
Gelinas, A.
Jarvis, T.
Clifton, M.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
3
90.00
90.00
120.00
50.230
50.230
103.630
C21 H22 N3 O9 P
491.388
2'-deoxy-5-[(naphthalen-1-ylmethyl)carbamoyl]uridine 5'-(dihydrogen phosphate)
DNA linking
C11 H16 N5 O7 P
361.248
n
2'-O-methyladenosine 5'-(dihydrogen phosphate)
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C17 H20 N3 O9 P
441.329
n
5-(benzylcarbamoyl)-2'-deoxyuridine 5'-(dihydrogen phosphate)
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C10 H16 N3 O8 P
337.223
n
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
RNA linking
C11 H16 N5 O8 P
377.247
n
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C18 H22 N3 O9 P
455.356
n
2'-deoxy-5-[(2-phenylethyl)carbamoyl]uridine 5'-(dihydrogen phosphate)
DNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
N
C
N
6
R
C
N
7
S
C
N
8
N
C
N
9
R
C
N
10
N
O
N
11
N
N
N
12
N
C
N
13
N
C
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
O
N
19
N
C
N
20
N
N
N
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
Y
26
N
C
Y
27
N
C
Y
28
N
C
Y
29
N
C
Y
30
N
C
Y
31
N
C
N
32
N
O
N
33
N
O
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
O
N
56
N
H
N
57
N
P
N
58
N
O
N
59
N
O
N
60
N
O
N
61
N
C
N
62
R
C
N
63
N
O
N
64
R
C
N
65
N
O
N
66
R
C
N
67
N
O
N
68
R
C
N
69
N
C
Y
70
N
N
Y
71
N
C
Y
72
N
N
Y
73
N
C
Y
74
N
C
N
75
N
N
Y
76
N
N
Y
77
N
C
Y
78
N
N
Y
79
N
C
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
O
N
96
N
H
N
97
N
N
N
98
S
C
N
99
N
C
N
100
N
O
N
101
N
C
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
C
N
117
N
N
N
118
N
C
N
119
N
N
N
120
N
N
N
121
N
O
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
O
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
R
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
S
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
O
N
185
N
P
N
186
N
O
N
187
N
O
N
188
N
O
N
189
N
C
N
190
R
C
N
191
N
O
N
192
S
C
N
193
N
O
N
194
N
C
N
195
R
C
Y
196
N
N
Y
197
N
C
Y
198
N
N
Y
199
N
C
Y
200
N
C
N
201
N
N
Y
202
N
N
Y
203
N
C
Y
204
N
N
Y
205
N
C
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
O
N
221
N
P
N
222
N
O
N
223
N
O
N
224
N
O
N
225
N
C
N
226
R
C
N
227
N
O
N
228
S
C
N
229
N
O
N
230
N
C
N
231
R
C
N
232
N
N
N
233
N
C
N
234
N
O
N
235
N
N
N
236
N
C
N
237
N
N
N
238
N
C
N
239
N
C
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
O
N
255
N
P
N
256
N
O
N
257
N
O
N
258
N
O
N
259
N
C
N
260
R
C
N
261
N
O
N
262
S
C
N
263
N
O
N
264
N
C
N
265
R
C
Y
266
N
N
Y
267
N
C
Y
268
N
N
Y
269
N
C
N
270
N
C
N
271
N
O
N
272
N
N
N
273
N
C
N
274
N
N
N
275
N
N
Y
276
N
C
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
P
N
292
N
N
N
293
N
C
N
294
N
O
N
295
N
N
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
R
C
N
301
N
C
N
302
N
C
N
303
N
O
N
304
N
N
N
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
S
C
N
312
N
O
Y
313
N
C
N
314
R
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
O
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
N
N
342
S
C
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
C
N
347
N
C
N
348
N
O
N
349
N
N
N
350
N
O
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
N
N
362
S
C
N
363
N
C
N
364
N
O
N
365
N
C
N
366
N
C
N
367
N
C
N
368
N
O
N
369
N
O
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
N
N
381
N
C
N
382
N
C
N
383
N
O
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
N
Y
397
N
C
Y
398
N
C
Y
399
N
N
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
O
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
S
C
N
419
N
C
N
420
N
C
N
421
N
C
N
422
N
O
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
N
N
437
S
C
N
438
N
C
N
439
N
O
N
440
N
C
N
441
N
C
N
442
N
C
N
443
N
C
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
N
N
459
S
C
N
460
N
C
N
461
N
O
N
462
N
C
N
463
N
C
N
464
N
C
N
465
N
C
N
466
N
N
N
467
N
O
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
N
N
484
S
C
N
485
N
C
N
486
N
O
N
487
N
C
N
488
N
C
N
489
N
S
N
490
N
C
N
491
N
O
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
NA
N
504
N
N
N
505
N
C
N
506
N
N
N
507
N
C
N
508
N
C
N
509
N
C
N
510
N
O
N
511
N
N
N
512
R
C
N
513
R
C
N
514
N
O
N
515
N
C
N
516
R
C
N
517
R
C
N
518
N
O
N
519
N
O
N
520
N
C
N
521
N
O
N
522
N
P
N
523
N
O
N
524
N
O
N
525
N
O
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
H
N
534
N
H
N
535
N
H
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
P
N
543
N
O
N
544
N
O
N
545
N
O
N
546
N
O
N
547
N
C
N
548
R
C
N
549
N
O
N
550
R
C
N
551
N
O
N
552
R
C
N
553
N
O
N
554
N
C
N
555
R
C
Y
556
N
N
Y
557
N
C
Y
558
N
N
Y
559
N
C
N
560
N
C
N
561
N
O
N
562
N
N
N
563
N
C
N
564
N
N
N
565
N
N
Y
566
N
C
N
567
N
H
N
568
N
H
N
569
N
H
N
570
N
H
N
571
N
H
N
572
N
H
N
573
N
H
N
574
N
H
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
N
N
584
S
C
N
585
N
C
N
586
N
O
N
587
N
C
Y
588
N
C
Y
589
N
C
Y
590
N
C
Y
591
N
C
Y
592
N
C
Y
593
N
C
N
594
N
O
N
595
N
H
N
596
N
H
N
597
N
H
N
598
N
H
N
599
N
H
N
600
N
H
N
601
N
H
N
602
N
H
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
N
N
607
S
C
N
608
N
C
N
609
N
O
N
610
N
C
N
611
N
C
N
612
N
C
N
613
N
O
N
614
N
H
N
615
N
H
N
616
N
H
N
617
N
H
N
618
N
H
N
619
N
H
N
620
N
H
N
621
N
H
N
622
N
H
N
623
N
N
N
624
S
C
N
625
N
C
N
626
N
O
N
627
N
C
N
628
N
O
N
629
N
O
N
630
N
H
N
631
N
H
N
632
N
H
N
633
N
H
N
634
N
H
N
635
N
H
N
636
N
H
N
637
N
N
N
638
S
C
N
639
N
C
N
640
N
O
N
641
R
C
N
642
N
O
N
643
N
C
N
644
N
O
N
645
N
H
N
646
N
H
N
647
N
H
N
648
N
H
N
649
N
H
N
650
N
H
N
651
N
H
N
652
N
H
N
653
N
H
N
654
N
N
N
655
S
C
N
656
N
C
N
657
N
O
N
658
N
C
Y
659
N
C
Y
660
N
C
Y
661
N
C
Y
662
N
N
Y
663
N
C
Y
664
N
C
Y
665
N
C
Y
666
N
C
Y
667
N
C
N
668
N
O
N
669
N
H
N
670
N
H
N
671
N
H
N
672
N
H
N
673
N
H
N
674
N
H
N
675
N
H
N
676
N
H
N
677
N
H
N
678
N
H
N
679
N
H
N
680
N
H
N
681
N
N
N
682
S
C
N
683
N
C
N
684
N
O
N
685
N
C
Y
686
N
C
Y
687
N
C
Y
688
N
C
Y
689
N
C
Y
690
N
C
Y
691
N
C
N
692
N
O
N
693
N
O
N
694
N
H
N
695
N
H
N
696
N
H
N
697
N
H
N
698
N
H
N
699
N
H
N
700
N
H
N
701
N
H
N
702
N
H
N
703
N
H
N
704
N
H
N
705
N
P
N
706
N
N
N
707
N
C
N
708
N
O
N
709
N
N
N
710
N
C
N
711
N
O
N
712
N
C
N
713
N
C
N
714
R
C
N
715
N
C
N
716
N
C
N
717
N
O
N
718
N
N
N
719
N
C
N
720
N
C
Y
721
N
C
Y
722
N
C
Y
723
N
C
Y
724
N
C
N
725
S
C
N
726
N
O
Y
727
N
C
Y
728
N
C
N
729
R
C
N
730
N
O
N
731
N
C
N
732
N
O
N
733
N
O
N
734
N
O
N
735
N
O
N
736
N
H
N
737
N
H
N
738
N
H
N
739
N
H
N
740
N
H
N
741
N
H
N
742
N
H
N
743
N
H
N
744
N
H
N
745
N
H
N
746
N
H
N
747
N
H
N
748
N
H
N
749
N
H
N
750
N
H
N
751
N
H
N
752
N
H
N
753
N
H
N
754
N
H
N
755
N
H
N
756
N
H
N
757
N
H
N
758
N
N
N
759
S
C
N
760
N
C
N
761
N
O
N
762
N
C
N
763
N
C
N
764
N
C
N
765
N
O
N
766
N
H
N
767
N
H
N
768
N
H
N
769
N
H
N
770
N
H
N
771
N
H
N
772
N
H
N
773
N
H
N
774
N
H
N
775
N
H
N
776
N
H
N
1
N
doub
Y
2
N
doub
Y
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
Y
7
N
sing
N
8
N
doub
N
9
N
sing
N
10
N
sing
N
11
N
sing
Y
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
doub
N
17
N
sing
N
18
N
sing
N
19
N
sing
Y
20
N
doub
Y
21
N
sing
Y
22
N
sing
Y
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
Y
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
Y
33
N
doub
Y
34
N
sing
N
35
N
sing
N
36
N
doub
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
Y
85
N
sing
Y
86
N
sing
Y
87
N
doub
N
88
N
sing
Y
89
N
sing
Y
90
N
sing
Y
91
N
doub
N
92
N
sing
Y
93
N
doub
N
94
N
sing
N
95
N
sing
Y
96
N
sing
Y
97
N
doub
N
98
N
sing
Y
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
Y
207
N
sing
Y
208
N
sing
Y
209
N
doub
N
210
N
sing
Y
211
N
sing
Y
212
N
sing
Y
213
N
doub
N
214
N
sing
Y
215
N
doub
N
216
N
sing
N
217
N
sing
Y
218
N
sing
Y
219
N
doub
N
220
N
sing
Y
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
Y
280
N
sing
Y
281
N
sing
Y
282
N
doub
N
283
N
sing
Y
284
N
sing
N
285
N
sing
Y
286
N
doub
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
doub
N
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
doub
N
332
N
sing
Y
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
doub
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
Y
405
N
sing
Y
406
N
doub
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
doub
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
doub
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
N
486
N
sing
N
487
N
sing
N
488
N
sing
N
489
N
doub
N
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
doub
N
507
N
doub
N
508
N
sing
N
509
N
sing
N
510
N
doub
N
511
N
sing
N
512
N
sing
N
513
N
sing
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
doub
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
doub
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
sing
Y
568
N
sing
Y
569
N
sing
Y
570
N
doub
N
571
N
sing
Y
572
N
sing
N
573
N
sing
Y
574
N
doub
N
575
N
doub
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
doub
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
doub
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
sing
Y
595
N
doub
Y
596
N
sing
Y
597
N
sing
N
598
N
sing
Y
599
N
doub
N
600
N
sing
Y
601
N
doub
N
602
N
sing
Y
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
doub
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
sing
N
618
N
sing
N
619
N
sing
N
620
N
sing
N
621
N
sing
N
622
N
sing
N
623
N
sing
N
624
N
sing
N
625
N
sing
N
626
N
sing
N
627
N
sing
N
628
N
sing
N
629
N
sing
N
630
N
doub
N
631
N
sing
N
632
N
sing
N
633
N
sing
N
634
N
sing
N
635
N
sing
N
636
N
sing
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
doub
N
644
N
sing
N
645
N
sing
N
646
N
sing
N
647
N
sing
N
648
N
sing
N
649
N
sing
N
650
N
sing
N
651
N
sing
N
652
N
sing
N
653
N
sing
N
654
N
sing
N
655
N
sing
N
656
N
sing
N
657
N
sing
N
658
N
sing
N
659
N
doub
N
660
N
sing
N
661
N
sing
N
662
N
sing
N
663
N
sing
Y
664
N
doub
Y
665
N
sing
Y
666
N
sing
N
667
N
sing
Y
668
N
doub
Y
669
N
sing
Y
670
N
sing
N
671
N
sing
Y
672
N
sing
Y
673
N
doub
N
674
N
sing
Y
675
N
doub
N
676
N
sing
Y
677
N
sing
N
678
N
sing
N
679
N
sing
N
680
N
sing
N
681
N
sing
N
682
N
sing
N
683
N
sing
N
684
N
sing
N
685
N
sing
N
686
N
sing
N
687
N
doub
N
688
N
sing
N
689
N
sing
N
690
N
sing
N
691
N
sing
Y
692
N
doub
Y
693
N
sing
Y
694
N
sing
N
695
N
sing
Y
696
N
doub
N
697
N
sing
Y
698
N
doub
N
699
N
sing
Y
700
N
sing
N
701
N
sing
N
702
N
sing
N
703
N
sing
N
704
N
sing
N
705
N
doub
N
706
N
sing
N
707
N
sing
N
708
N
sing
N
709
N
sing
N
710
N
sing
N
711
N
sing
N
712
N
doub
N
713
N
sing
N
714
N
sing
N
715
N
sing
N
716
N
doub
N
717
N
sing
N
718
N
doub
N
719
N
sing
N
720
N
sing
N
721
N
sing
N
722
N
sing
N
723
N
sing
N
724
N
sing
N
725
N
sing
N
726
N
sing
N
727
N
doub
N
728
N
sing
N
729
N
sing
N
730
N
sing
N
731
N
sing
N
732
N
sing
N
733
N
sing
N
734
N
sing
N
735
N
sing
N
736
N
sing
Y
737
N
doub
Y
738
N
sing
Y
739
N
doub
N
740
N
sing
Y
741
N
sing
N
742
N
sing
Y
743
N
doub
N
744
N
sing
N
745
N
sing
N
746
N
sing
N
747
N
sing
N
748
N
sing
Y
749
N
sing
N
750
N
sing
N
751
N
sing
N
752
N
sing
N
753
N
sing
N
754
N
sing
N
755
N
sing
N
756
N
sing
N
757
N
sing
N
758
N
sing
N
759
N
sing
N
760
N
sing
N
761
N
sing
N
762
N
sing
N
763
N
sing
N
764
N
sing
N
765
N
sing
N
766
N
doub
N
767
N
sing
N
768
N
sing
N
769
N
sing
N
770
N
sing
N
771
N
sing
N
772
N
sing
N
773
N
sing
N
774
N
sing
N
775
N
sing
N
776
N
sing
N
777
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
289
8720
8734
10.1074/jbc.M113.532697
24415767
Crystal structure of interleukin-6 in complex with a modified nucleic Acid ligand.
2014
10.2210/pdb4ni7/pdb
pdb_00004ni7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2010-11-18
MARMOSAIC 300 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.03318
1.0
21-ID-D
APS
1.03318
1.03318
SYNCHROTRON
APS BEAMLINE 21-ID-D
21137.156
Interleukin-6
1
man
polymer
11402.860
SOMAmer SL1025
1
syn
polymer
22.990
SODIUM ION
2
syn
non-polymer
18.015
water
29
nat
water
IL-6, B-cell stimulatory factor 2, BSF-2, CTL differentiation factor, CDF, Hybridoma growth factor, Interferon beta-2, IFN-beta-2
no
no
MAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGF
NEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWL
QDMTTHLILRSFKEFLQSSLRALRQM
MAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGF
NEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWL
QDMTTHLILRSFKEFLQSSLRALRQM
A
polypeptide(L)
no
yes
(DG)(DG)(OMC)(DA)(DG)(OMG)(DUZ)(DUZ)(UPE)(DG)(DG)(2JU)(DA)(DUZ)(DUZ)(A2M)(DA)
(DC)(A2M)(OMC)(DG)(DUZ)(DUZ)(DA)(DA)(DG)(DUZ)(OMC)(DG)(DUZ)(DG)(DG)
GGCAGGXXXGGXAXXAACACGXXAAGXCGXGG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
IL6, IFNB2
9606
Homo sapiens
562
Escherichia coli
1
2.31
51.00
VAPOR DIFFUSION, SITTING DROP
5.5
31% PEG 3350, 180 mM LiNO3, 100 mM Sodium Acetate (pH 5.5), 2.5% Hexamine Cobalt Chloride, VAPOR DIFFUSION, SITTING DROP, temperature 289K
289
-53.567
2
22
B
3
B
29
-149.567
B_OMC3:DG29_B
1
31.600
-0.079
-0.191
-3.479
-26.725
3
6
B
31
B
2
92.060
B_DG31:DG2_B
2
1.358
-1.416
1.293
-3.246
24.218
3
6
B
11
B
5
-90.486
B_DG11:DG5_B
3
-6.682
1.465
0.077
3.377
19.720
3
6
B
6
B
10
-85.224
B_OMG6:DG10_B
4
-1.213
1.422
0.122
3.819
-27.338
9
11
B
13
B
26
15.159
B_DA13:DG26_B
5
-1.017
-6.480
1.233
-4.090
31.760
1
B
18
B
21
15.854
B_DC18:DG21_B
6
15.012
0.810
-0.939
0.543
19.891
3
6
B
32
B
1
-91.798
B_DG32:DG1_B
7
1.047
1.523
-0.994
3.310
1.720
150.656
B
B
3
31
-51.500
B
B
29
2
-0.907
-87.785
1.297
-4.961
BB_OMC3DG31:DG2DG29_BB
1
-122.192
71.686
13.173
-2.346
-0.974
-0.008
-179.432
B
B
31
11
5.286
B
B
2
5
-0.010
-10.572
1.603
3.433
BB_DG31DG11:DG5DG2_BB
2
-10.495
-5.247
-179.427
-1.717
0.801
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Database references
Structure summary
Data collection
Database references
Derived calculations
Refinement description
1
0
2014-01-22
1
1
2014-02-12
1
2
2014-04-09
1
3
2016-06-01
1
4
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-11-05
REL
REL
NA
SODIUM ION
HOH
water
1IL6
PDB ENTRY 1IL6
PDB
experimental model
NA
1
3
NA
NA
101
B
NA
2
3
NA
NA
102
B
HOH
1
4
HOH
HOH
201
A
HOH
2
4
HOH
HOH
202
A
HOH
3
4
HOH
HOH
203
A
HOH
5
4
HOH
HOH
204
A
HOH
6
4
HOH
HOH
205
A
HOH
7
4
HOH
HOH
206
A
HOH
8
4
HOH
HOH
207
A
HOH
12
4
HOH
HOH
208
A
HOH
13
4
HOH
HOH
209
A
HOH
14
4
HOH
HOH
210
A
HOH
15
4
HOH
HOH
211
A
HOH
19
4
HOH
HOH
212
A
HOH
20
4
HOH
HOH
213
A
HOH
21
4
HOH
HOH
214
A
HOH
22
4
HOH
HOH
215
A
HOH
27
4
HOH
HOH
216
A
HOH
28
4
HOH
HOH
217
A
HOH
29
4
HOH
HOH
218
A
HOH
4
4
HOH
HOH
201
B
HOH
9
4
HOH
HOH
202
B
HOH
10
4
HOH
HOH
203
B
HOH
11
4
HOH
HOH
204
B
HOH
16
4
HOH
HOH
205
B
HOH
17
4
HOH
HOH
206
B
HOH
18
4
HOH
HOH
207
B
HOH
23
4
HOH
HOH
208
B
HOH
24
4
HOH
HOH
209
B
HOH
25
4
HOH
HOH
210
B
HOH
26
4
HOH
HOH
211
B
n
1
-1
A
n
2
0
A
n
3
1
A
n
4
2
A
n
5
3
A
n
6
4
A
n
7
5
A
n
8
6
A
n
9
7
A
n
10
8
A
n
11
9
A
n
12
10
A
n
13
11
A
n
14
12
A
n
15
13
A
n
16
14
A
n
17
15
A
ARG
16
n
18
ARG
16
A
GLN
17
n
19
GLN
17
A
PRO
18
n
20
PRO
18
A
LEU
19
n
21
LEU
19
A
THR
20
n
22
THR
20
A
SER
21
n
23
SER
21
A
SER
22
n
24
SER
22
A
GLU
23
n
25
GLU
23
A
ARG
24
n
26
ARG
24
A
ILE
25
n
27
ILE
25
A
ASP
26
n
28
ASP
26
A
LYS
27
n
29
LYS
27
A
GLN
28
n
30
GLN
28
A
ILE
29
n
31
ILE
29
A
ARG
30
n
32
ARG
30
A
TYR
31
n
33
TYR
31
A
ILE
32
n
34
ILE
32
A
LEU
33
n
35
LEU
33
A
ASP
34
n
36
ASP
34
A
GLY
35
n
37
GLY
35
A
ILE
36
n
38
ILE
36
A
SER
37
n
39
SER
37
A
ALA
38
n
40
ALA
38
A
LEU
39
n
41
LEU
39
A
ARG
40
n
42
ARG
40
A
LYS
41
n
43
LYS
41
A
GLU
42
n
44
GLU
42
A
THR
43
n
45
THR
43
A
CYS
44
n
46
CYS
44
A
ASN
45
n
47
ASN
45
A
LYS
46
n
48
LYS
46
A
SER
47
n
49
SER
47
A
n
50
48
A
n
51
49
A
n
52
50
A
n
53
51
A
n
54
52
A
n
55
53
A
n
56
54
A
n
57
55
A
n
58
56
A
n
59
57
A
n
60
58
A
n
61
59
A
n
62
60
A
ASN
61
n
63
ASN
61
A
LEU
62
n
64
LEU
62
A
ASN
63
n
65
ASN
63
A
LEU
64
n
66
LEU
64
A
PRO
65
n
67
PRO
65
A
LYS
66
n
68
LYS
66
A
MET
67
n
69
MET
67
A
ALA
68
n
70
ALA
68
A
GLU
69
n
71
GLU
69
A
LYS
70
n
72
LYS
70
A
ASP
71
n
73
ASP
71
A
GLY
72
n
74
GLY
72
A
CYS
73
n
75
CYS
73
A
PHE
74
n
76
PHE
74
A
GLN
75
n
77
GLN
75
A
SER
76
n
78
SER
76
A
GLY
77
n
79
GLY
77
A
PHE
78
n
80
PHE
78
A
ASN
79
n
81
ASN
79
A
GLU
80
n
82
GLU
80
A
GLU
81
n
83
GLU
81
A
THR
82
n
84
THR
82
A
CYS
83
n
85
CYS
83
A
LEU
84
n
86
LEU
84
A
VAL
85
n
87
VAL
85
A
LYS
86
n
88
LYS
86
A
ILE
87
n
89
ILE
87
A
ILE
88
n
90
ILE
88
A
THR
89
n
91
THR
89
A
GLY
90
n
92
GLY
90
A
LEU
91
n
93
LEU
91
A
LEU
92
n
94
LEU
92
A
GLU
93
n
95
GLU
93
A
PHE
94
n
96
PHE
94
A
GLU
95
n
97
GLU
95
A
VAL
96
n
98
VAL
96
A
TYR
97
n
99
TYR
97
A
LEU
98
n
100
LEU
98
A
GLU
99
n
101
GLU
99
A
TYR
100
n
102
TYR
100
A
LEU
101
n
103
LEU
101
A
GLN
102
n
104
GLN
102
A
ASN
103
n
105
ASN
103
A
ARG
104
n
106
ARG
104
A
PHE
105
n
107
PHE
105
A
GLU
106
n
108
GLU
106
A
SER
107
n
109
SER
107
A
SER
108
n
110
SER
108
A
GLU
109
n
111
GLU
109
A
GLU
110
n
112
GLU
110
A
GLN
111
n
113
GLN
111
A
ALA
112
n
114
ALA
112
A
ARG
113
n
115
ARG
113
A
ALA
114
n
116
ALA
114
A
VAL
115
n
117
VAL
115
A
GLN
116
n
118
GLN
116
A
MET
117
n
119
MET
117
A
SER
118
n
120
SER
118
A
THR
119
n
121
THR
119
A
LYS
120
n
122
LYS
120
A
VAL
121
n
123
VAL
121
A
LEU
122
n
124
LEU
122
A
ILE
123
n
125
ILE
123
A
GLN
124
n
126
GLN
124
A
PHE
125
n
127
PHE
125
A
LEU
126
n
128
LEU
126
A
GLN
127
n
129
GLN
127
A
LYS
128
n
130
LYS
128
A
LYS
129
n
131
LYS
129
A
ALA
130
n
132
ALA
130
A
n
133
131
A
n
134
132
A
n
135
133
A
n
136
134
A
n
137
135
A
ILE
136
n
138
ILE
136
A
THR
137
n
139
THR
137
A
THR
138
n
140
THR
138
A
PRO
139
n
141
PRO
139
A
ASP
140
n
142
ASP
140
A
PRO
141
n
143
PRO
141
A
THR
142
n
144
THR
142
A
THR
143
n
145
THR
143
A
ASN
144
n
146
ASN
144
A
ALA
145
n
147
ALA
145
A
SER
146
n
148
SER
146
A
LEU
147
n
149
LEU
147
A
LEU
148
n
150
LEU
148
A
THR
149
n
151
THR
149
A
LYS
150
n
152
LYS
150
A
LEU
151
n
153
LEU
151
A
GLN
152
n
154
GLN
152
A
ALA
153
n
155
ALA
153
A
GLN
154
n
156
GLN
154
A
ASN
155
n
157
ASN
155
A
GLN
156
n
158
GLN
156
A
TRP
157
n
159
TRP
157
A
LEU
158
n
160
LEU
158
A
GLN
159
n
161
GLN
159
A
ASP
160
n
162
ASP
160
A
MET
161
n
163
MET
161
A
THR
162
n
164
THR
162
A
THR
163
n
165
THR
163
A
HIS
164
n
166
HIS
164
A
LEU
165
n
167
LEU
165
A
ILE
166
n
168
ILE
166
A
LEU
167
n
169
LEU
167
A
ARG
168
n
170
ARG
168
A
SER
169
n
171
SER
169
A
PHE
170
n
172
PHE
170
A
LYS
171
n
173
LYS
171
A
GLU
172
n
174
GLU
172
A
PHE
173
n
175
PHE
173
A
LEU
174
n
176
LEU
174
A
GLN
175
n
177
GLN
175
A
SER
176
n
178
SER
176
A
SER
177
n
179
SER
177
A
LEU
178
n
180
LEU
178
A
ARG
179
n
181
ARG
179
A
ALA
180
n
182
ALA
180
A
LEU
181
n
183
LEU
181
A
ARG
182
n
184
ARG
182
A
GLN
183
n
185
GLN
183
A
MET
184
n
186
MET
184
A
DG
1
n
1
DG
1
B
DG
2
n
2
DG
2
B
OMC
3
n
3
OMC
3
B
DA
4
n
4
DA
4
B
DG
5
n
5
DG
5
B
OMG
6
n
6
OMG
6
B
BDU
7
n
7
DUZ
7
B
BDU
8
n
8
DUZ
8
B
PEU
9
n
9
UPE
9
B
DG
10
n
10
DG
10
B
DG
11
n
11
DG
11
B
NDU
12
n
12
2JU
12
B
DA
13
n
13
DA
13
B
BDU
14
n
14
DUZ
14
B
BDU
15
n
15
DUZ
15
B
A2M
16
n
16
A2M
16
B
DA
17
n
17
DA
17
B
DC
18
n
18
DC
18
B
A2M
19
n
19
A2M
19
B
n
20
20
B
DG
21
n
21
DG
21
B
BDU
22
n
22
DUZ
22
B
BDU
23
n
23
DUZ
23
B
DA
24
n
24
DA
24
B
DA
25
n
25
DA
25
B
DG
26
n
26
DG
26
B
BDU
27
n
27
DUZ
27
B
OMC
28
n
28
OMC
28
B
DG
29
n
29
DG
29
B
BDU
30
n
30
DUZ
30
B
DG
31
n
31
DG
31
B
DG
32
n
32
DG
32
B
2.6899
-0.5615
-2.1681
1.3343
2.0044
4.5929
0.0703
0.2612
-0.0575
0.1967
-0.1813
0.1528
0.0076
-0.1867
0.1110
0.0678
0.0185
0.0772
0.1090
0.0070
0.2194
refined
-6.6864
12.1735
8.9461
X-RAY DIFFRACTION
1.8952
1.5758
-1.6158
2.5957
-1.7706
3.1618
-0.1121
0.0587
-0.1552
0.1099
0.0755
-0.0057
0.1480
0.3598
0.0365
0.0422
0.0329
0.0217
0.1338
0.0164
0.1777
refined
9.9279
4.5232
6.6574
X-RAY DIFFRACTION
A
16
A
218
X-RAY DIFFRACTION
1
B
1
B
211
X-RAY DIFFRACTION
2
author_defined_assembly
2
dimeric
B
DG
1
B
O6
DG
1
1_555
B
NA
101
C
NA
NA
1_555
B
OMG
6
B
O6
OMG
6
1_555
90.1
B
DG
1
B
O6
DG
1
1_555
B
NA
101
C
NA
NA
1_555
B
UPE
9
B
O22
UPE
9
1_555
84.1
B
OMG
6
B
O6
OMG
6
1_555
B
NA
101
C
NA
NA
1_555
B
UPE
9
B
O22
UPE
9
1_555
136.9
B
DG
1
B
O6
DG
1
1_555
B
NA
101
C
NA
NA
1_555
B
DG
10
B
O6
DG
10
1_555
125.6
B
OMG
6
B
O6
OMG
6
1_555
B
NA
101
C
NA
NA
1_555
B
DG
10
B
O6
DG
10
1_555
83.7
B
UPE
9
B
O22
UPE
9
1_555
B
NA
101
C
NA
NA
1_555
B
DG
10
B
O6
DG
10
1_555
133.1
B
DG
1
B
O6
DG
1
1_555
B
NA
101
C
NA
NA
1_555
B
DG
32
B
O6
DG
32
1_555
78.9
B
OMG
6
B
O6
OMG
6
1_555
B
NA
101
C
NA
NA
1_555
B
DG
32
B
O6
DG
32
1_555
138.7
B
UPE
9
B
O22
UPE
9
1_555
B
NA
101
C
NA
NA
1_555
B
DG
32
B
O6
DG
32
1_555
81.9
B
DG
10
B
O6
DG
10
1_555
B
NA
101
C
NA
NA
1_555
B
DG
32
B
O6
DG
32
1_555
71.6
B
DG
2
B
O6
DG
2
1_555
B
NA
102
D
NA
NA
1_555
B
DG
5
B
O6
DG
5
1_555
87.6
B
DG
2
B
O6
DG
2
1_555
B
NA
102
D
NA
NA
1_555
B
DG
10
B
O6
DG
10
1_555
139.5
B
DG
5
B
O6
DG
5
1_555
B
NA
102
D
NA
NA
1_555
B
DG
10
B
O6
DG
10
1_555
85.5
B
DG
2
B
O6
DG
2
1_555
B
NA
102
D
NA
NA
1_555
B
DG
11
B
O6
DG
11
1_555
141.6
B
DG
5
B
O6
DG
5
1_555
B
NA
102
D
NA
NA
1_555
B
DG
11
B
O6
DG
11
1_555
78.6
B
DG
10
B
O6
DG
10
1_555
B
NA
102
D
NA
NA
1_555
B
DG
11
B
O6
DG
11
1_555
75.4
B
DG
2
B
O6
DG
2
1_555
B
NA
102
D
NA
NA
1_555
B
DG
31
B
O6
DG
31
1_555
88.4
B
DG
5
B
O6
DG
5
1_555
B
NA
102
D
NA
NA
1_555
B
DG
31
B
O6
DG
31
1_555
150.4
B
DG
10
B
O6
DG
10
1_555
B
NA
102
D
NA
NA
1_555
B
DG
31
B
O6
DG
31
1_555
115.5
B
DG
11
B
O6
DG
11
1_555
B
NA
102
D
NA
NA
1_555
B
DG
31
B
O6
DG
31
1_555
86.6
B
DG
2
B
O6
DG
2
1_555
B
NA
102
D
NA
NA
1_555
B
DG
32
B
O6
DG
32
1_555
104.2
B
DG
5
B
O6
DG
5
1_555
B
NA
102
D
NA
NA
1_555
B
DG
32
B
O6
DG
32
1_555
140.7
B
DG
10
B
O6
DG
10
1_555
B
NA
102
D
NA
NA
1_555
B
DG
32
B
O6
DG
32
1_555
61.0
B
DG
11
B
O6
DG
11
1_555
B
NA
102
D
NA
NA
1_555
B
DG
32
B
O6
DG
32
1_555
109.1
B
DG
31
B
O6
DG
31
1_555
B
NA
102
D
NA
NA
1_555
B
DG
32
B
O6
DG
32
1_555
68.4
B
OMC
3
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
B
OMC
3
C
B
OMG
6
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
B
OMG
6
G
B
DUZ
7
B
DUZ
7
DU
B
DUZ
8
B
DUZ
8
DU
B
UPE
9
B
UPE
9
DU
B
DUZ
14
B
DUZ
14
DU
B
DUZ
15
B
DUZ
15
DU
B
A2M
16
B
A2M
16
A
B
A2M
19
B
A2M
19
A
B
DUZ
22
B
DUZ
22
DU
B
DUZ
23
B
DUZ
23
DU
B
DUZ
27
B
DUZ
27
DU
B
OMC
28
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
B
OMC
28
C
B
DUZ
30
B
DUZ
30
DU
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
GLN
17
A
CG
GLN
19
1
Y
1
A
CD
GLN
17
A
CD
GLN
19
1
Y
1
A
OE1
GLN
17
A
OE1
GLN
19
1
Y
1
A
NE2
GLN
17
A
NE2
GLN
19
1
Y
1
A
CG
ARG
40
A
CG
ARG
42
1
Y
1
A
CD
ARG
40
A
CD
ARG
42
1
Y
1
A
NE
ARG
40
A
NE
ARG
42
1
Y
1
A
CZ
ARG
40
A
CZ
ARG
42
1
Y
1
A
NH1
ARG
40
A
NH1
ARG
42
1
Y
1
A
NH2
ARG
40
A
NH2
ARG
42
1
Y
1
A
CG
LYS
41
A
CG
LYS
43
1
Y
1
A
CD
LYS
41
A
CD
LYS
43
1
Y
1
A
CE
LYS
41
A
CE
LYS
43
1
Y
1
A
NZ
LYS
41
A
NZ
LYS
43
1
Y
1
A
CG
GLU
42
A
CG
GLU
44
1
Y
1
A
CD
GLU
42
A
CD
GLU
44
1
Y
1
A
OE1
GLU
42
A
OE1
GLU
44
1
Y
1
A
OE2
GLU
42
A
OE2
GLU
44
1
Y
1
A
CG
ASN
45
A
CG
ASN
47
1
Y
1
A
OD1
ASN
45
A
OD1
ASN
47
1
Y
1
A
ND2
ASN
45
A
ND2
ASN
47
1
Y
1
A
CG
LYS
46
A
CG
LYS
48
1
Y
1
A
CD
LYS
46
A
CD
LYS
48
1
Y
1
A
CE
LYS
46
A
CE
LYS
48
1
Y
1
A
NZ
LYS
46
A
NZ
LYS
48
1
Y
1
A
CG
ASN
61
A
CG
ASN
63
1
Y
1
A
OD1
ASN
61
A
OD1
ASN
63
1
Y
1
A
ND2
ASN
61
A
ND2
ASN
63
1
Y
1
A
CG
ASN
63
A
CG
ASN
65
1
Y
1
A
OD1
ASN
63
A
OD1
ASN
65
1
Y
1
A
ND2
ASN
63
A
ND2
ASN
65
1
Y
1
A
CG
LYS
66
A
CG
LYS
68
1
Y
1
A
CD
LYS
66
A
CD
LYS
68
1
Y
1
A
CE
LYS
66
A
CE
LYS
68
1
Y
1
A
NZ
LYS
66
A
NZ
LYS
68
1
Y
1
A
CG
LYS
70
A
CG
LYS
72
1
Y
1
A
CD
LYS
70
A
CD
LYS
72
1
Y
1
A
CE
LYS
70
A
CE
LYS
72
1
Y
1
A
NZ
LYS
70
A
NZ
LYS
72
1
Y
1
A
CG
GLN
75
A
CG
GLN
77
1
Y
1
A
CD
GLN
75
A
CD
GLN
77
1
Y
1
A
OE1
GLN
75
A
OE1
GLN
77
1
Y
1
A
NE2
GLN
75
A
NE2
GLN
77
1
Y
1
A
CG
PHE
78
A
CG
PHE
80
1
Y
1
A
CD1
PHE
78
A
CD1
PHE
80
1
Y
1
A
CD2
PHE
78
A
CD2
PHE
80
1
Y
1
A
CE1
PHE
78
A
CE1
PHE
80
1
Y
1
A
CE2
PHE
78
A
CE2
PHE
80
1
Y
1
A
CZ
PHE
78
A
CZ
PHE
80
1
Y
1
A
CG
GLU
80
A
CG
GLU
82
1
Y
1
A
CD
GLU
80
A
CD
GLU
82
1
Y
1
A
OE1
GLU
80
A
OE1
GLU
82
1
Y
1
A
OE2
GLU
80
A
OE2
GLU
82
1
Y
1
A
CG
GLU
81
A
CG
GLU
83
1
Y
1
A
CD
GLU
81
A
CD
GLU
83
1
Y
1
A
OE1
GLU
81
A
OE1
GLU
83
1
Y
1
A
OE2
GLU
81
A
OE2
GLU
83
1
Y
1
A
CG
LEU
84
A
CG
LEU
86
1
Y
1
A
CD1
LEU
84
A
CD1
LEU
86
1
Y
1
A
CD2
LEU
84
A
CD2
LEU
86
1
Y
1
A
CG
ASN
103
A
CG
ASN
105
1
Y
1
A
OD1
ASN
103
A
OD1
ASN
105
1
Y
1
A
ND2
ASN
103
A
ND2
ASN
105
1
Y
1
A
CG
GLU
106
A
CG
GLU
108
1
Y
1
A
CD
GLU
106
A
CD
GLU
108
1
Y
1
A
OE1
GLU
106
A
OE1
GLU
108
1
Y
1
A
OE2
GLU
106
A
OE2
GLU
108
1
Y
1
A
CG
GLU
109
A
CG
GLU
111
1
Y
1
A
CD
GLU
109
A
CD
GLU
111
1
Y
1
A
OE1
GLU
109
A
OE1
GLU
111
1
Y
1
A
OE2
GLU
109
A
OE2
GLU
111
1
Y
1
A
CG1
ILE
136
A
CG1
ILE
138
1
Y
1
A
CG2
ILE
136
A
CG2
ILE
138
1
Y
1
A
CD1
ILE
136
A
CD1
ILE
138
1
Y
1
A
CG
ASP
140
A
CG
ASP
142
1
Y
1
A
OD1
ASP
140
A
OD1
ASP
142
1
Y
1
A
OD2
ASP
140
A
OD2
ASP
142
1
Y
1
A
CG
LYS
150
A
CG
LYS
152
1
Y
1
A
CD
LYS
150
A
CD
LYS
152
1
Y
1
A
CE
LYS
150
A
CE
LYS
152
1
Y
1
A
NZ
LYS
150
A
NZ
LYS
152
1
Y
1
A
CG
ARG
179
A
CG
ARG
181
1
Y
1
A
CD
ARG
179
A
CD
ARG
181
1
Y
1
A
NE
ARG
179
A
NE
ARG
181
1
Y
1
A
CZ
ARG
179
A
CZ
ARG
181
1
Y
1
A
NH1
ARG
179
A
NH1
ARG
181
1
Y
1
A
NH2
ARG
179
A
NH2
ARG
181
1
Y
1
A
CG
GLN
183
A
CG
GLN
185
1
Y
1
A
CD
GLN
183
A
CD
GLN
185
1
Y
1
A
OE1
GLN
183
A
OE1
GLN
185
1
Y
1
A
NE2
GLN
183
A
NE2
GLN
185
1
Y
1
A
CG
MET
184
A
CG
MET
186
1
Y
1
A
SD
MET
184
A
SD
MET
186
1
Y
1
A
CE
MET
184
A
CE
MET
186
1
Y
1
B
C5'
A2M
19
B
C5'
A2M
19
1
Y
1
B
C4'
A2M
19
B
C4'
A2M
19
1
Y
1
B
O4'
A2M
19
B
O4'
A2M
19
1
Y
1
B
C3'
A2M
19
B
C3'
A2M
19
1
Y
1
B
O3'
A2M
19
B
O3'
A2M
19
1
Y
1
B
C2'
A2M
19
B
C2'
A2M
19
1
Y
1
B
O2'
A2M
19
B
O2'
A2M
19
1
Y
1
B
C1'
A2M
19
B
C1'
A2M
19
1
Y
1
B
CM'
A2M
19
B
CM'
A2M
19
1
Y
1
B
N9
A2M
19
B
N9
A2M
19
1
Y
1
B
C8
A2M
19
B
C8
A2M
19
1
Y
1
B
N7
A2M
19
B
N7
A2M
19
1
Y
1
B
C5
A2M
19
B
C5
A2M
19
1
Y
1
B
C6
A2M
19
B
C6
A2M
19
1
Y
1
B
N6
A2M
19
B
N6
A2M
19
1
Y
1
B
N1
A2M
19
B
N1
A2M
19
1
Y
1
B
C2
A2M
19
B
C2
A2M
19
1
Y
1
B
N3
A2M
19
B
N3
A2M
19
1
Y
1
B
C4
A2M
19
B
C4
A2M
19
1
Y
1
A
MET
-1
A
MET
1
1
Y
1
A
ALA
0
A
ALA
2
1
Y
1
A
PRO
1
A
PRO
3
1
Y
1
A
VAL
2
A
VAL
4
1
Y
1
A
PRO
3
A
PRO
5
1
Y
1
A
PRO
4
A
PRO
6
1
Y
1
A
GLY
5
A
GLY
7
1
Y
1
A
GLU
6
A
GLU
8
1
Y
1
A
ASP
7
A
ASP
9
1
Y
1
A
SER
8
A
SER
10
1
Y
1
A
LYS
9
A
LYS
11
1
Y
1
A
ASP
10
A
ASP
12
1
Y
1
A
VAL
11
A
VAL
13
1
Y
1
A
ALA
12
A
ALA
14
1
Y
1
A
ALA
13
A
ALA
15
1
Y
1
A
PRO
14
A
PRO
16
1
Y
1
A
HIS
15
A
HIS
17
1
Y
1
A
ASN
48
A
ASN
50
1
Y
1
A
MET
49
A
MET
51
1
Y
1
A
CYS
50
A
CYS
52
1
Y
1
A
GLU
51
A
GLU
53
1
Y
1
A
SER
52
A
SER
54
1
Y
1
A
SER
53
A
SER
55
1
Y
1
A
LYS
54
A
LYS
56
1
Y
1
A
GLU
55
A
GLU
57
1
Y
1
A
ALA
56
A
ALA
58
1
Y
1
A
LEU
57
A
LEU
59
1
Y
1
A
ALA
58
A
ALA
60
1
Y
1
A
GLU
59
A
GLU
61
1
Y
1
A
ASN
60
A
ASN
62
1
Y
1
A
LYS
131
A
LYS
133
1
Y
1
A
ASN
132
A
ASN
134
1
Y
1
A
LEU
133
A
LEU
135
1
Y
1
A
ASP
134
A
ASP
136
1
Y
1
A
ALA
135
A
ALA
137
1
Y
1
B
OMC
20
B
OMC
20
1
Y
1
8.01
1.20
119.70
127.71
B
B
B
C3'
O3'
P
DUZ
DUZ
UPE
8
8
9
Y
1
-16.08
1.90
104.00
87.92
B
B
B
O3'
P
O5'
DUZ
UPE
UPE
8
9
9
Y
1
-8.96
0.80
109.40
100.44
B
B
B
O5'
C5'
C4'
DA
DA
DA
13
13
13
N
1
-8.76
0.70
108.00
99.24
B
B
B
O4'
C1'
N9
DA
DA
DA
13
13
13
N
1
7.94
1.20
119.70
127.64
B
B
B
C3'
O3'
P
DUZ
DUZ
DUZ
14
14
15
Y
1
-34.58
2.20
105.20
70.62
B
B
B
O3'
P
OP1
DUZ
A2M
A2M
15
16
16
Y
1
4.23
0.30
108.30
112.53
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
1
-44.35
1.90
104.00
59.65
B
B
B
O3'
P
O5'
DC
A2M
A2M
18
19
19
Y
1
1.81
0.30
108.30
110.11
B
B
B
O4'
C1'
N9
DA
DA
DA
25
25
25
N
1
4.56
0.30
108.30
112.86
B
B
B
O4'
C1'
N9
DG
DG
DG
26
26
26
N
1
A
THR
43
-92.78
-63.24
1
A
SER
108
-76.96
29.60
59.79
11.15000
0.00000
0.00000
11.15000
0.00000
-22.30000
0.941
0.916
HYDROGENS HAVE BEEN ADDED IN THE
0.260
0.222
0.224
2.40
43.50
570
11384
5.000
14.870
0.151
RANDOM
1
THROUGHOUT
0.000
SAD WITH MR
0.087
0.056
0.80
0.80
1.40
PDB ENTRY 1IL6
MAXIMUM LIKELIHOOD
MASK
2.40
43.50
29
1890
2
729
1130
0.010
0.021
1959
1.922
2.431
2779
4.915
5.000
148
45.308
24.186
43
16.021
15.000
195
21.769
15.000
7
0.128
0.200
315
0.005
0.020
1278
0.699
1.500
753
1.286
2.000
1193
1.610
3.000
1206
2.498
4.500
1586
0.4040
0.2800
2.46
35
777
20
99.15
65.61
2.400
4NI7
11411
-3.000
0.04000
1
26.8900
6.4
99.7
0.61400
2.40
2.46
3.100
1
6.4
100
phasing
PHASER
refinement
REFMAC
5.5.0109
data reduction
XDS
data scaling
XSCALE
Crystal structure of human interleukin 6 in complex with a modified nucleotide aptamer (SOMAMER SL1025)
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
BIOMOLECULE: NULL
SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
BURIED SURFACE AREA.
REMARK: MONOMER
A
THR
20
A
THR
22
HELX_P
A
ASN
45
A
ASN
47
1
1
26
A
ALA
68
A
ALA
70
HELX_P
A
GLY
72
A
GLY
74
5
2
5
A
ASN
79
A
ASN
81
HELX_P
A
GLN
102
A
GLN
104
1
3
24
A
SER
108
A
SER
110
HELX_P
A
ALA
130
A
ALA
132
1
4
23
A
ASP
140
A
ASP
142
HELX_P
A
GLN
154
A
GLN
156
1
5
15
A
ASN
155
A
ASN
157
HELX_P
A
ARG
182
A
ARG
184
1
6
28
disulf
2.035
A
CYS
73
A
SG
CYS
75
1_555
A
CYS
83
A
SG
CYS
85
1_555
covale
1.607
both
B
DG
2
B
O3'
DG
2
1_555
B
OMC
3
B
P
OMC
3
1_555
covale
1.595
both
B
OMC
3
B
O3'
OMC
3
1_555
B
DA
4
B
P
DA
4
1_555
covale
1.601
both
B
DG
5
B
O3'
DG
5
1_555
B
OMG
6
B
P
OMG
6
1_555
covale
1.583
both
B
OMG
6
B
O3'
OMG
6
1_555
B
DUZ
7
B
P
DUZ
7
1_555
covale
1.615
one
B
DUZ
7
B
O3'
DUZ
7
1_555
B
DUZ
8
B
P
DUZ
8
1_555
covale
1.612
one
B
DUZ
8
B
O3'
DUZ
8
1_555
B
UPE
9
B
P
UPE
9
1_555
covale
1.611
one
B
UPE
9
B
O3'
UPE
9
1_555
B
DG
10
B
P
DG
10
1_555
covale
1.588
both
B
DG
11
B
O3'
DG
11
1_555
B
2JU
12
B
P
2JU
12
1_555
covale
1.579
one
B
2JU
12
B
O3'
2JU
12
1_555
B
DA
13
B
P
DA
13
1_555
covale
1.584
both
B
DA
13
B
O3'
DA
13
1_555
B
DUZ
14
B
P
DUZ
14
1_555
covale
1.612
one
B
DUZ
14
B
O3'
DUZ
14
1_555
B
DUZ
15
B
P
DUZ
15
1_555
covale
1.623
one
B
DUZ
15
B
O3'
DUZ
15
1_555
B
A2M
16
B
P
A2M
16
1_555
covale
1.602
one
B
A2M
16
B
O3'
A2M
16
1_555
B
DA
17
B
P
DA
17
1_555
covale
1.611
both
B
DC
18
B
O3'
DC
18
1_555
B
A2M
19
B
P
A2M
19
1_555
covale
1.602
both
B
DG
21
B
O3'
DG
21
1_555
B
DUZ
22
B
P
DUZ
22
1_555
covale
1.596
one
B
DUZ
22
B
O3'
DUZ
22
1_555
B
DUZ
23
B
P
DUZ
23
1_555
covale
1.598
one
B
DUZ
23
B
O3'
DUZ
23
1_555
B
DA
24
B
P
DA
24
1_555
covale
1.603
both
B
DG
26
B
O3'
DG
26
1_555
B
DUZ
27
B
P
DUZ
27
1_555
covale
1.597
one
B
DUZ
27
B
O3'
DUZ
27
1_555
B
OMC
28
B
P
OMC
28
1_555
covale
1.586
both
B
OMC
28
B
O3'
OMC
28
1_555
B
DG
29
B
P
DG
29
1_555
covale
1.597
both
B
DG
29
B
O3'
DG
29
1_555
B
DUZ
30
B
P
DUZ
30
1_555
covale
1.596
one
B
DUZ
30
B
O3'
DUZ
30
1_555
B
DG
31
B
P
DG
31
1_555
metalc
2.450
B
DG
1
B
O6
DG
1
1_555
B
NA
101
C
NA
NA
1_555
metalc
2.237
B
DG
2
B
O6
DG
2
1_555
B
NA
102
D
NA
NA
1_555
metalc
2.413
B
DG
5
B
O6
DG
5
1_555
B
NA
102
D
NA
NA
1_555
metalc
2.370
B
OMG
6
B
O6
OMG
6
1_555
B
NA
101
C
NA
NA
1_555
metalc
2.594
B
UPE
9
B
O22
UPE
9
1_555
B
NA
101
C
NA
NA
1_555
metalc
2.493
B
DG
10
B
O6
DG
10
1_555
B
NA
101
C
NA
NA
1_555
metalc
2.626
B
DG
10
B
O6
DG
10
1_555
B
NA
102
D
NA
NA
1_555
metalc
2.391
B
DG
11
B
O6
DG
11
1_555
B
NA
102
D
NA
NA
1_555
metalc
2.337
B
DG
31
B
O6
DG
31
1_555
B
NA
102
D
NA
NA
1_555
metalc
2.533
B
DG
32
B
O6
DG
32
1_555
B
NA
101
C
NA
NA
1_555
metalc
3.110
B
DG
32
B
O6
DG
32
1_555
B
NA
102
D
NA
NA
1_555
hydrog
TYPE_6_PAIR
B
DG
1
B
N1
DG
1
1_555
B
OMG
6
B
O6
OMG
6
1_555
hydrog
TYPE_6_PAIR
B
DG
1
B
N2
DG
1
1_555
B
OMG
6
B
N7
OMG
6
1_555
hydrog
TYPE_6_PAIR
B
DG
1
B
N7
DG
1
1_555
B
DG
32
B
N2
DG
32
1_555
hydrog
TYPE_6_PAIR
B
DG
1
B
O6
DG
1
1_555
B
DG
32
B
N1
DG
32
1_555
hydrog
TYPE_6_PAIR
B
DG
2
B
N7
DG
2
1_555
B
DG
5
B
N2
DG
5
1_555
hydrog
TYPE_6_PAIR
B
DG
2
B
O6
DG
2
1_555
B
DG
5
B
N1
DG
5
1_555
hydrog
TYPE_6_PAIR
B
DG
2
B
N1
DG
2
1_555
B
DG
31
B
O6
DG
31
1_555
hydrog
TYPE_6_PAIR
B
DG
2
B
N2
DG
2
1_555
B
DG
31
B
N7
DG
31
1_555
hydrog
REVERSED WATSON-CRICK
B
OMC
3
B
N3
OMC
3
1_555
B
DG
29
B
N2
DG
29
1_555
hydrog
REVERSED WATSON-CRICK
B
OMC
3
B
O2
OMC
3
1_555
B
DG
29
B
N1
DG
29
1_555
hydrog
DA-DG MISPAIR
B
DA
4
B
N6
DA
4
1_555
B
DG
31
B
O6
DG
31
1_555
hydrog
TYPE_6_PAIR
B
DG
5
B
N7
DG
5
1_555
B
DG
11
B
N2
DG
11
1_555
hydrog
TYPE_6_PAIR
B
DG
5
B
O6
DG
5
1_555
B
DG
11
B
N1
DG
11
1_555
hydrog
TYPE_6_PAIR
B
OMG
6
B
N1
OMG
6
1_555
B
DG
10
B
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
B
OMG
6
B
N2
OMG
6
1_555
B
DG
10
B
N7
DG
10
1_555
hydrog
TYPE_6_PAIR
B
DG
10
B
N1
DG
10
1_555
B
DG
32
B
O6
DG
32
1_555
hydrog
TYPE_6_PAIR
B
DG
10
B
N2
DG
10
1_555
B
DG
32
B
N7
DG
32
1_555
hydrog
TYPE_6_PAIR
B
DG
11
B
N7
DG
11
1_555
B
DG
31
B
N2
DG
31
1_555
hydrog
TYPE_6_PAIR
B
DG
11
B
O6
DG
11
1_555
B
DG
31
B
N1
DG
31
1_555
hydrog
TYPE_11_PAIR
B
DA
13
B
N6
DA
13
1_555
B
DG
26
B
N3
DG
26
1_555
hydrog
TYPE_11_PAIR
B
DA
13
B
N7
DA
13
1_555
B
DG
26
B
N2
DG
26
1_555
hydrog
DC-DG PAIR
B
DC
18
B
O2
DC
18
1_555
B
DG
21
B
N1
DG
21
1_555
CYTOKINE/DNA
Interleukin-6, CYTOKINE-DNA complex
IL6_HUMAN
UNP
1
28
P05231
APVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFN
EETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWLQ
DMTTHLILRSFKEFLQSSLRALRQM
4NI7
PDB
2
4NI7
28
212
4NI7
0
184
P05231
A
1
2
186
1
32
4NI7
1
32
4NI7
B
2
1
32
1
initiating methionine
MET
-1
4NI7
A
P05231
UNP
1
BINDING SITE FOR RESIDUE NA B 101
B
NA
101
Software
6
BINDING SITE FOR RESIDUE NA B 102
B
NA
102
Software
10
B
DG
1
B
DG
1
6
1_555
B
OMG
6
B
OMG
6
6
1_555
B
UPE
9
B
UPE
9
6
1_555
B
DG
10
B
DG
10
6
1_555
B
DG
32
B
DG
32
6
1_555
B
NA
102
D
NA
6
1_555
B
DG
1
B
DG
1
10
1_555
B
DG
2
B
DG
2
10
1_555
B
DA
4
B
DA
4
10
1_555
B
DG
5
B
DG
5
10
1_555
B
OMG
6
B
OMG
6
10
1_555
B
DG
10
B
DG
10
10
1_555
B
DG
11
B
DG
11
10
1_555
B
DG
31
B
DG
31
10
1_555
B
DG
32
B
DG
32
10
1_555
B
NA
101
C
NA
10
1_555
145
P 32