0.019908 0.011494 0.000000 0.000000 0.022988 0.000000 0.000000 0.000000 0.009650 0.00000 0.00000 0.00000 Davies, D. Edwards, T. Gelinas, A. Jarvis, T. Clifton, M.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 3 90.00 90.00 120.00 50.230 50.230 103.630 C21 H22 N3 O9 P 491.388 2'-deoxy-5-[(naphthalen-1-ylmethyl)carbamoyl]uridine 5'-(dihydrogen phosphate) DNA linking C11 H16 N5 O7 P 361.248 n 2'-O-methyladenosine 5'-(dihydrogen phosphate) RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C17 H20 N3 O9 P 441.329 n 5-(benzylcarbamoyl)-2'-deoxyuridine 5'-(dihydrogen phosphate) DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C10 H16 N3 O8 P 337.223 n O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE RNA linking C11 H16 N5 O8 P 377.247 n O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C18 H22 N3 O9 P 455.356 n 2'-deoxy-5-[(2-phenylethyl)carbamoyl]uridine 5'-(dihydrogen phosphate) DNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N P N 2 N O N 3 N O N 4 N O N 5 N C N 6 R C N 7 S C N 8 N C N 9 R C N 10 N O N 11 N N N 12 N C N 13 N C N 14 N C N 15 N O N 16 N N N 17 N C N 18 N O N 19 N C N 20 N N N 21 N C Y 22 N C Y 23 N C Y 24 N C Y 25 N C Y 26 N C Y 27 N C Y 28 N C Y 29 N C Y 30 N C Y 31 N C N 32 N O N 33 N O N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N O N 56 N H N 57 N P N 58 N O N 59 N O N 60 N O N 61 N C N 62 R C N 63 N O N 64 R C N 65 N O N 66 R C N 67 N O N 68 R C N 69 N C Y 70 N N Y 71 N C Y 72 N N Y 73 N C Y 74 N C N 75 N N Y 76 N N Y 77 N C Y 78 N N Y 79 N C N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N O N 96 N H N 97 N N N 98 S C N 99 N C N 100 N O N 101 N C N 102 N O N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N N N 111 S C N 112 N C N 113 N O N 114 N C N 115 N C N 116 N C N 117 N N N 118 N C N 119 N N N 120 N N N 121 N O N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C N 142 N C N 143 N O N 144 N N N 145 N O N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N N N 155 S C N 156 N C N 157 N O N 158 N C N 159 N C N 160 N O N 161 N O N 162 N O N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 R C N 172 N C N 173 N O N 174 N C N 175 N S N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N O N 185 N P N 186 N O N 187 N O N 188 N O N 189 N C N 190 R C N 191 N O N 192 S C N 193 N O N 194 N C N 195 R C Y 196 N N Y 197 N C Y 198 N N Y 199 N C Y 200 N C N 201 N N Y 202 N N Y 203 N C Y 204 N N Y 205 N C N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N O N 221 N P N 222 N O N 223 N O N 224 N O N 225 N C N 226 R C N 227 N O N 228 S C N 229 N O N 230 N C N 231 R C N 232 N N N 233 N C N 234 N O N 235 N N N 236 N C N 237 N N N 238 N C N 239 N C N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N O N 255 N P N 256 N O N 257 N O N 258 N O N 259 N C N 260 R C N 261 N O N 262 S C N 263 N O N 264 N C N 265 R C Y 266 N N Y 267 N C Y 268 N N Y 269 N C N 270 N C N 271 N O N 272 N N N 273 N C N 274 N N N 275 N N Y 276 N C N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N P N 292 N N N 293 N C N 294 N O N 295 N N N 296 N C N 297 N O N 298 N C N 299 N C N 300 R C N 301 N C N 302 N C N 303 N O N 304 N N N 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C N 311 S C N 312 N O Y 313 N C N 314 R C N 315 N O N 316 N C N 317 N O N 318 N O N 319 N O N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 N C N 346 N C N 347 N C N 348 N O N 349 N N N 350 N O N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N N N 362 S C N 363 N C N 364 N O N 365 N C N 366 N C N 367 N C N 368 N O N 369 N O N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 N C N 382 N C N 383 N O N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N N N 391 S C N 392 N C N 393 N O N 394 N C Y 395 N C Y 396 N N Y 397 N C Y 398 N C Y 399 N N N 400 N O N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N O N 412 N H N 413 N H N 414 N N N 415 S C N 416 N C N 417 N O N 418 S C N 419 N C N 420 N C N 421 N C N 422 N O N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N N N 437 S C N 438 N C N 439 N O N 440 N C N 441 N C N 442 N C N 443 N C N 444 N O N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N N N 459 S C N 460 N C N 461 N O N 462 N C N 463 N C N 464 N C N 465 N C N 466 N N N 467 N O N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N N N 484 S C N 485 N C N 486 N O N 487 N C N 488 N C N 489 N S N 490 N C N 491 N O N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N NA N 504 N N N 505 N C N 506 N N N 507 N C N 508 N C N 509 N C N 510 N O N 511 N N N 512 R C N 513 R C N 514 N O N 515 N C N 516 R C N 517 R C N 518 N O N 519 N O N 520 N C N 521 N O N 522 N P N 523 N O N 524 N O N 525 N O N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N H N 537 N H N 538 N H N 539 N H N 540 N H N 541 N H N 542 N P N 543 N O N 544 N O N 545 N O N 546 N O N 547 N C N 548 R C N 549 N O N 550 R C N 551 N O N 552 R C N 553 N O N 554 N C N 555 R C Y 556 N N Y 557 N C Y 558 N N Y 559 N C N 560 N C N 561 N O N 562 N N N 563 N C N 564 N N N 565 N N Y 566 N C N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 579 N H N 580 N H N 581 N H N 582 N H N 583 N N N 584 S C N 585 N C N 586 N O N 587 N C Y 588 N C Y 589 N C Y 590 N C Y 591 N C Y 592 N C Y 593 N C N 594 N O N 595 N H N 596 N H N 597 N H N 598 N H N 599 N H N 600 N H N 601 N H N 602 N H N 603 N H N 604 N H N 605 N H N 606 N N N 607 S C N 608 N C N 609 N O N 610 N C N 611 N C N 612 N C N 613 N O N 614 N H N 615 N H N 616 N H N 617 N H N 618 N H N 619 N H N 620 N H N 621 N H N 622 N H N 623 N N N 624 S C N 625 N C N 626 N O N 627 N C N 628 N O N 629 N O N 630 N H N 631 N H N 632 N H N 633 N H N 634 N H N 635 N H N 636 N H N 637 N N N 638 S C N 639 N C N 640 N O N 641 R C N 642 N O N 643 N C N 644 N O N 645 N H N 646 N H N 647 N H N 648 N H N 649 N H N 650 N H N 651 N H N 652 N H N 653 N H N 654 N N N 655 S C N 656 N C N 657 N O N 658 N C Y 659 N C Y 660 N C Y 661 N C Y 662 N N Y 663 N C Y 664 N C Y 665 N C Y 666 N C Y 667 N C N 668 N O N 669 N H N 670 N H N 671 N H N 672 N H N 673 N H N 674 N H N 675 N H N 676 N H N 677 N H N 678 N H N 679 N H N 680 N H N 681 N N N 682 S C N 683 N C N 684 N O N 685 N C Y 686 N C Y 687 N C Y 688 N C Y 689 N C Y 690 N C Y 691 N C N 692 N O N 693 N O N 694 N H N 695 N H N 696 N H N 697 N H N 698 N H N 699 N H N 700 N H N 701 N H N 702 N H N 703 N H N 704 N H N 705 N P N 706 N N N 707 N C N 708 N O N 709 N N N 710 N C N 711 N O N 712 N C N 713 N C N 714 R C N 715 N C N 716 N C N 717 N O N 718 N N N 719 N C N 720 N C Y 721 N C Y 722 N C Y 723 N C Y 724 N C N 725 S C N 726 N O Y 727 N C Y 728 N C N 729 R C N 730 N O N 731 N C N 732 N O N 733 N O N 734 N O N 735 N O N 736 N H N 737 N H N 738 N H N 739 N H N 740 N H N 741 N H N 742 N H N 743 N H N 744 N H N 745 N H N 746 N H N 747 N H N 748 N H N 749 N H N 750 N H N 751 N H N 752 N H N 753 N H N 754 N H N 755 N H N 756 N H N 757 N H N 758 N N N 759 S C N 760 N C N 761 N O N 762 N C N 763 N C N 764 N C N 765 N O N 766 N H N 767 N H N 768 N H N 769 N H N 770 N H N 771 N H N 772 N H N 773 N H N 774 N H N 775 N H N 776 N H N 1 N doub Y 2 N doub Y 3 N sing N 4 N sing N 5 N sing N 6 N sing Y 7 N sing N 8 N doub N 9 N sing N 10 N sing N 11 N sing Y 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N doub N 17 N sing N 18 N sing N 19 N sing Y 20 N doub Y 21 N sing Y 22 N sing Y 23 N sing N 24 N sing N 25 N sing N 26 N doub N 27 N sing Y 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing Y 33 N doub Y 34 N sing N 35 N sing N 36 N doub N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N doub N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing Y 85 N sing Y 86 N sing Y 87 N doub N 88 N sing Y 89 N sing Y 90 N sing Y 91 N doub N 92 N sing Y 93 N doub N 94 N sing N 95 N sing Y 96 N sing Y 97 N doub N 98 N sing Y 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing Y 207 N sing Y 208 N sing Y 209 N doub N 210 N sing Y 211 N sing Y 212 N sing Y 213 N doub N 214 N sing Y 215 N doub N 216 N sing N 217 N sing Y 218 N sing Y 219 N doub N 220 N sing Y 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing Y 280 N sing Y 281 N sing Y 282 N doub N 283 N sing Y 284 N sing N 285 N sing Y 286 N doub N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N doub N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N doub N 328 N sing Y 329 N sing N 330 N sing Y 331 N doub N 332 N sing Y 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N doub N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing Y 405 N sing Y 406 N doub Y 407 N doub N 408 N sing Y 409 N sing N 410 N sing Y 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N doub N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N doub N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N doub N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N doub N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N doub N 507 N doub N 508 N sing N 509 N sing N 510 N doub N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N sing N 533 N sing N 534 N sing N 535 N sing N 536 N doub N 537 N sing N 538 N sing N 539 N sing N 540 N sing N 541 N doub N 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N sing N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N sing Y 568 N sing Y 569 N sing Y 570 N doub N 571 N sing Y 572 N sing N 573 N sing Y 574 N doub N 575 N doub N 576 N sing N 577 N sing N 578 N sing N 579 N sing N 580 N doub N 581 N sing N 582 N sing N 583 N sing N 584 N sing N 585 N sing N 586 N sing N 587 N sing N 588 N sing N 589 N sing N 590 N doub N 591 N sing N 592 N sing N 593 N sing N 594 N sing Y 595 N doub Y 596 N sing Y 597 N sing N 598 N sing Y 599 N doub N 600 N sing Y 601 N doub N 602 N sing Y 603 N sing N 604 N sing N 605 N sing N 606 N sing N 607 N sing N 608 N sing N 609 N sing N 610 N sing N 611 N sing N 612 N sing N 613 N doub N 614 N sing N 615 N sing N 616 N sing N 617 N sing N 618 N sing N 619 N sing N 620 N sing N 621 N sing N 622 N sing N 623 N sing N 624 N sing N 625 N sing N 626 N sing N 627 N sing N 628 N sing N 629 N sing N 630 N doub N 631 N sing N 632 N sing N 633 N sing N 634 N sing N 635 N sing N 636 N sing N 637 N sing N 638 N sing N 639 N sing N 640 N sing N 641 N sing N 642 N sing N 643 N doub N 644 N sing N 645 N sing N 646 N sing N 647 N sing N 648 N sing N 649 N sing N 650 N sing N 651 N sing N 652 N sing N 653 N sing N 654 N sing N 655 N sing N 656 N sing N 657 N sing N 658 N sing N 659 N doub N 660 N sing N 661 N sing N 662 N sing N 663 N sing Y 664 N doub Y 665 N sing Y 666 N sing N 667 N sing Y 668 N doub Y 669 N sing Y 670 N sing N 671 N sing Y 672 N sing Y 673 N doub N 674 N sing Y 675 N doub N 676 N sing Y 677 N sing N 678 N sing N 679 N sing N 680 N sing N 681 N sing N 682 N sing N 683 N sing N 684 N sing N 685 N sing N 686 N sing N 687 N doub N 688 N sing N 689 N sing N 690 N sing N 691 N sing Y 692 N doub Y 693 N sing Y 694 N sing N 695 N sing Y 696 N doub N 697 N sing Y 698 N doub N 699 N sing Y 700 N sing N 701 N sing N 702 N sing N 703 N sing N 704 N sing N 705 N doub N 706 N sing N 707 N sing N 708 N sing N 709 N sing N 710 N sing N 711 N sing N 712 N doub N 713 N sing N 714 N sing N 715 N sing N 716 N doub N 717 N sing N 718 N doub N 719 N sing N 720 N sing N 721 N sing N 722 N sing N 723 N sing N 724 N sing N 725 N sing N 726 N sing N 727 N doub N 728 N sing N 729 N sing N 730 N sing N 731 N sing N 732 N sing N 733 N sing N 734 N sing N 735 N sing N 736 N sing Y 737 N doub Y 738 N sing Y 739 N doub N 740 N sing Y 741 N sing N 742 N sing Y 743 N doub N 744 N sing N 745 N sing N 746 N sing N 747 N sing N 748 N sing Y 749 N sing N 750 N sing N 751 N sing N 752 N sing N 753 N sing N 754 N sing N 755 N sing N 756 N sing N 757 N sing N 758 N sing N 759 N sing N 760 N sing N 761 N sing N 762 N sing N 763 N sing N 764 N sing N 765 N sing N 766 N doub N 767 N sing N 768 N sing N 769 N sing N 770 N sing N 771 N sing N 772 N sing N 773 N sing N 774 N sing N 775 N sing N 776 N sing N 777 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 289 8720 8734 10.1074/jbc.M113.532697 24415767 Crystal structure of interleukin-6 in complex with a modified nucleic Acid ligand. 2014 10.2210/pdb4ni7/pdb pdb_00004ni7 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2010-11-18 MARMOSAIC 300 mm CCD SINGLE WAVELENGTH M x-ray 1 1.03318 1.0 21-ID-D APS 1.03318 1.03318 SYNCHROTRON APS BEAMLINE 21-ID-D 21137.156 Interleukin-6 1 man polymer 11402.860 SOMAmer SL1025 1 syn polymer 22.990 SODIUM ION 2 syn non-polymer 18.015 water 29 nat water IL-6, B-cell stimulatory factor 2, BSF-2, CTL differentiation factor, CDF, Hybridoma growth factor, Interferon beta-2, IFN-beta-2 no no MAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGF NEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWL QDMTTHLILRSFKEFLQSSLRALRQM MAPVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGF NEETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWL QDMTTHLILRSFKEFLQSSLRALRQM A polypeptide(L) no yes (DG)(DG)(OMC)(DA)(DG)(OMG)(DUZ)(DUZ)(UPE)(DG)(DG)(2JU)(DA)(DUZ)(DUZ)(A2M)(DA) (DC)(A2M)(OMC)(DG)(DUZ)(DUZ)(DA)(DA)(DG)(DUZ)(OMC)(DG)(DUZ)(DG)(DG) GGCAGGXXXGGXAXXAACACGXXAAGXCGXGG B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample IL6, IFNB2 9606 Homo sapiens 562 Escherichia coli 1 2.31 51.00 VAPOR DIFFUSION, SITTING DROP 5.5 31% PEG 3350, 180 mM LiNO3, 100 mM Sodium Acetate (pH 5.5), 2.5% Hexamine Cobalt Chloride, VAPOR DIFFUSION, SITTING DROP, temperature 289K 289 -53.567 2 22 B 3 B 29 -149.567 B_OMC3:DG29_B 1 31.600 -0.079 -0.191 -3.479 -26.725 3 6 B 31 B 2 92.060 B_DG31:DG2_B 2 1.358 -1.416 1.293 -3.246 24.218 3 6 B 11 B 5 -90.486 B_DG11:DG5_B 3 -6.682 1.465 0.077 3.377 19.720 3 6 B 6 B 10 -85.224 B_OMG6:DG10_B 4 -1.213 1.422 0.122 3.819 -27.338 9 11 B 13 B 26 15.159 B_DA13:DG26_B 5 -1.017 -6.480 1.233 -4.090 31.760 1 B 18 B 21 15.854 B_DC18:DG21_B 6 15.012 0.810 -0.939 0.543 19.891 3 6 B 32 B 1 -91.798 B_DG32:DG1_B 7 1.047 1.523 -0.994 3.310 1.720 150.656 B B 3 31 -51.500 B B 29 2 -0.907 -87.785 1.297 -4.961 BB_OMC3DG31:DG2DG29_BB 1 -122.192 71.686 13.173 -2.346 -0.974 -0.008 -179.432 B B 31 11 5.286 B B 2 5 -0.010 -10.572 1.603 3.433 BB_DG31DG11:DG5DG2_BB 2 -10.495 -5.247 -179.427 -1.717 0.801 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Database references Structure summary Data collection Database references Derived calculations Refinement description 1 0 2014-01-22 1 1 2014-02-12 1 2 2014-04-09 1 3 2016-06-01 1 4 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2013-11-05 REL REL NA SODIUM ION HOH water 1IL6 PDB ENTRY 1IL6 PDB experimental model NA 1 3 NA NA 101 B NA 2 3 NA NA 102 B HOH 1 4 HOH HOH 201 A HOH 2 4 HOH HOH 202 A HOH 3 4 HOH HOH 203 A HOH 5 4 HOH HOH 204 A HOH 6 4 HOH HOH 205 A HOH 7 4 HOH HOH 206 A HOH 8 4 HOH HOH 207 A HOH 12 4 HOH HOH 208 A HOH 13 4 HOH HOH 209 A HOH 14 4 HOH HOH 210 A HOH 15 4 HOH HOH 211 A HOH 19 4 HOH HOH 212 A HOH 20 4 HOH HOH 213 A HOH 21 4 HOH HOH 214 A HOH 22 4 HOH HOH 215 A HOH 27 4 HOH HOH 216 A HOH 28 4 HOH HOH 217 A HOH 29 4 HOH HOH 218 A HOH 4 4 HOH HOH 201 B HOH 9 4 HOH HOH 202 B HOH 10 4 HOH HOH 203 B HOH 11 4 HOH HOH 204 B HOH 16 4 HOH HOH 205 B HOH 17 4 HOH HOH 206 B HOH 18 4 HOH HOH 207 B HOH 23 4 HOH HOH 208 B HOH 24 4 HOH HOH 209 B HOH 25 4 HOH HOH 210 B HOH 26 4 HOH HOH 211 B n 1 -1 A n 2 0 A n 3 1 A n 4 2 A n 5 3 A n 6 4 A n 7 5 A n 8 6 A n 9 7 A n 10 8 A n 11 9 A n 12 10 A n 13 11 A n 14 12 A n 15 13 A n 16 14 A n 17 15 A ARG 16 n 18 ARG 16 A GLN 17 n 19 GLN 17 A PRO 18 n 20 PRO 18 A LEU 19 n 21 LEU 19 A THR 20 n 22 THR 20 A SER 21 n 23 SER 21 A SER 22 n 24 SER 22 A GLU 23 n 25 GLU 23 A ARG 24 n 26 ARG 24 A ILE 25 n 27 ILE 25 A ASP 26 n 28 ASP 26 A LYS 27 n 29 LYS 27 A GLN 28 n 30 GLN 28 A ILE 29 n 31 ILE 29 A ARG 30 n 32 ARG 30 A TYR 31 n 33 TYR 31 A ILE 32 n 34 ILE 32 A LEU 33 n 35 LEU 33 A ASP 34 n 36 ASP 34 A GLY 35 n 37 GLY 35 A ILE 36 n 38 ILE 36 A SER 37 n 39 SER 37 A ALA 38 n 40 ALA 38 A LEU 39 n 41 LEU 39 A ARG 40 n 42 ARG 40 A LYS 41 n 43 LYS 41 A GLU 42 n 44 GLU 42 A THR 43 n 45 THR 43 A CYS 44 n 46 CYS 44 A ASN 45 n 47 ASN 45 A LYS 46 n 48 LYS 46 A SER 47 n 49 SER 47 A n 50 48 A n 51 49 A n 52 50 A n 53 51 A n 54 52 A n 55 53 A n 56 54 A n 57 55 A n 58 56 A n 59 57 A n 60 58 A n 61 59 A n 62 60 A ASN 61 n 63 ASN 61 A LEU 62 n 64 LEU 62 A ASN 63 n 65 ASN 63 A LEU 64 n 66 LEU 64 A PRO 65 n 67 PRO 65 A LYS 66 n 68 LYS 66 A MET 67 n 69 MET 67 A ALA 68 n 70 ALA 68 A GLU 69 n 71 GLU 69 A LYS 70 n 72 LYS 70 A ASP 71 n 73 ASP 71 A GLY 72 n 74 GLY 72 A CYS 73 n 75 CYS 73 A PHE 74 n 76 PHE 74 A GLN 75 n 77 GLN 75 A SER 76 n 78 SER 76 A GLY 77 n 79 GLY 77 A PHE 78 n 80 PHE 78 A ASN 79 n 81 ASN 79 A GLU 80 n 82 GLU 80 A GLU 81 n 83 GLU 81 A THR 82 n 84 THR 82 A CYS 83 n 85 CYS 83 A LEU 84 n 86 LEU 84 A VAL 85 n 87 VAL 85 A LYS 86 n 88 LYS 86 A ILE 87 n 89 ILE 87 A ILE 88 n 90 ILE 88 A THR 89 n 91 THR 89 A GLY 90 n 92 GLY 90 A LEU 91 n 93 LEU 91 A LEU 92 n 94 LEU 92 A GLU 93 n 95 GLU 93 A PHE 94 n 96 PHE 94 A GLU 95 n 97 GLU 95 A VAL 96 n 98 VAL 96 A TYR 97 n 99 TYR 97 A LEU 98 n 100 LEU 98 A GLU 99 n 101 GLU 99 A TYR 100 n 102 TYR 100 A LEU 101 n 103 LEU 101 A GLN 102 n 104 GLN 102 A ASN 103 n 105 ASN 103 A ARG 104 n 106 ARG 104 A PHE 105 n 107 PHE 105 A GLU 106 n 108 GLU 106 A SER 107 n 109 SER 107 A SER 108 n 110 SER 108 A GLU 109 n 111 GLU 109 A GLU 110 n 112 GLU 110 A GLN 111 n 113 GLN 111 A ALA 112 n 114 ALA 112 A ARG 113 n 115 ARG 113 A ALA 114 n 116 ALA 114 A VAL 115 n 117 VAL 115 A GLN 116 n 118 GLN 116 A MET 117 n 119 MET 117 A SER 118 n 120 SER 118 A THR 119 n 121 THR 119 A LYS 120 n 122 LYS 120 A VAL 121 n 123 VAL 121 A LEU 122 n 124 LEU 122 A ILE 123 n 125 ILE 123 A GLN 124 n 126 GLN 124 A PHE 125 n 127 PHE 125 A LEU 126 n 128 LEU 126 A GLN 127 n 129 GLN 127 A LYS 128 n 130 LYS 128 A LYS 129 n 131 LYS 129 A ALA 130 n 132 ALA 130 A n 133 131 A n 134 132 A n 135 133 A n 136 134 A n 137 135 A ILE 136 n 138 ILE 136 A THR 137 n 139 THR 137 A THR 138 n 140 THR 138 A PRO 139 n 141 PRO 139 A ASP 140 n 142 ASP 140 A PRO 141 n 143 PRO 141 A THR 142 n 144 THR 142 A THR 143 n 145 THR 143 A ASN 144 n 146 ASN 144 A ALA 145 n 147 ALA 145 A SER 146 n 148 SER 146 A LEU 147 n 149 LEU 147 A LEU 148 n 150 LEU 148 A THR 149 n 151 THR 149 A LYS 150 n 152 LYS 150 A LEU 151 n 153 LEU 151 A GLN 152 n 154 GLN 152 A ALA 153 n 155 ALA 153 A GLN 154 n 156 GLN 154 A ASN 155 n 157 ASN 155 A GLN 156 n 158 GLN 156 A TRP 157 n 159 TRP 157 A LEU 158 n 160 LEU 158 A GLN 159 n 161 GLN 159 A ASP 160 n 162 ASP 160 A MET 161 n 163 MET 161 A THR 162 n 164 THR 162 A THR 163 n 165 THR 163 A HIS 164 n 166 HIS 164 A LEU 165 n 167 LEU 165 A ILE 166 n 168 ILE 166 A LEU 167 n 169 LEU 167 A ARG 168 n 170 ARG 168 A SER 169 n 171 SER 169 A PHE 170 n 172 PHE 170 A LYS 171 n 173 LYS 171 A GLU 172 n 174 GLU 172 A PHE 173 n 175 PHE 173 A LEU 174 n 176 LEU 174 A GLN 175 n 177 GLN 175 A SER 176 n 178 SER 176 A SER 177 n 179 SER 177 A LEU 178 n 180 LEU 178 A ARG 179 n 181 ARG 179 A ALA 180 n 182 ALA 180 A LEU 181 n 183 LEU 181 A ARG 182 n 184 ARG 182 A GLN 183 n 185 GLN 183 A MET 184 n 186 MET 184 A DG 1 n 1 DG 1 B DG 2 n 2 DG 2 B OMC 3 n 3 OMC 3 B DA 4 n 4 DA 4 B DG 5 n 5 DG 5 B OMG 6 n 6 OMG 6 B BDU 7 n 7 DUZ 7 B BDU 8 n 8 DUZ 8 B PEU 9 n 9 UPE 9 B DG 10 n 10 DG 10 B DG 11 n 11 DG 11 B NDU 12 n 12 2JU 12 B DA 13 n 13 DA 13 B BDU 14 n 14 DUZ 14 B BDU 15 n 15 DUZ 15 B A2M 16 n 16 A2M 16 B DA 17 n 17 DA 17 B DC 18 n 18 DC 18 B A2M 19 n 19 A2M 19 B n 20 20 B DG 21 n 21 DG 21 B BDU 22 n 22 DUZ 22 B BDU 23 n 23 DUZ 23 B DA 24 n 24 DA 24 B DA 25 n 25 DA 25 B DG 26 n 26 DG 26 B BDU 27 n 27 DUZ 27 B OMC 28 n 28 OMC 28 B DG 29 n 29 DG 29 B BDU 30 n 30 DUZ 30 B DG 31 n 31 DG 31 B DG 32 n 32 DG 32 B 2.6899 -0.5615 -2.1681 1.3343 2.0044 4.5929 0.0703 0.2612 -0.0575 0.1967 -0.1813 0.1528 0.0076 -0.1867 0.1110 0.0678 0.0185 0.0772 0.1090 0.0070 0.2194 refined -6.6864 12.1735 8.9461 X-RAY DIFFRACTION 1.8952 1.5758 -1.6158 2.5957 -1.7706 3.1618 -0.1121 0.0587 -0.1552 0.1099 0.0755 -0.0057 0.1480 0.3598 0.0365 0.0422 0.0329 0.0217 0.1338 0.0164 0.1777 refined 9.9279 4.5232 6.6574 X-RAY DIFFRACTION A 16 A 218 X-RAY DIFFRACTION 1 B 1 B 211 X-RAY DIFFRACTION 2 author_defined_assembly 2 dimeric B DG 1 B O6 DG 1 1_555 B NA 101 C NA NA 1_555 B OMG 6 B O6 OMG 6 1_555 90.1 B DG 1 B O6 DG 1 1_555 B NA 101 C NA NA 1_555 B UPE 9 B O22 UPE 9 1_555 84.1 B OMG 6 B O6 OMG 6 1_555 B NA 101 C NA NA 1_555 B UPE 9 B O22 UPE 9 1_555 136.9 B DG 1 B O6 DG 1 1_555 B NA 101 C NA NA 1_555 B DG 10 B O6 DG 10 1_555 125.6 B OMG 6 B O6 OMG 6 1_555 B NA 101 C NA NA 1_555 B DG 10 B O6 DG 10 1_555 83.7 B UPE 9 B O22 UPE 9 1_555 B NA 101 C NA NA 1_555 B DG 10 B O6 DG 10 1_555 133.1 B DG 1 B O6 DG 1 1_555 B NA 101 C NA NA 1_555 B DG 32 B O6 DG 32 1_555 78.9 B OMG 6 B O6 OMG 6 1_555 B NA 101 C NA NA 1_555 B DG 32 B O6 DG 32 1_555 138.7 B UPE 9 B O22 UPE 9 1_555 B NA 101 C NA NA 1_555 B DG 32 B O6 DG 32 1_555 81.9 B DG 10 B O6 DG 10 1_555 B NA 101 C NA NA 1_555 B DG 32 B O6 DG 32 1_555 71.6 B DG 2 B O6 DG 2 1_555 B NA 102 D NA NA 1_555 B DG 5 B O6 DG 5 1_555 87.6 B DG 2 B O6 DG 2 1_555 B NA 102 D NA NA 1_555 B DG 10 B O6 DG 10 1_555 139.5 B DG 5 B O6 DG 5 1_555 B NA 102 D NA NA 1_555 B DG 10 B O6 DG 10 1_555 85.5 B DG 2 B O6 DG 2 1_555 B NA 102 D NA NA 1_555 B DG 11 B O6 DG 11 1_555 141.6 B DG 5 B O6 DG 5 1_555 B NA 102 D NA NA 1_555 B DG 11 B O6 DG 11 1_555 78.6 B DG 10 B O6 DG 10 1_555 B NA 102 D NA NA 1_555 B DG 11 B O6 DG 11 1_555 75.4 B DG 2 B O6 DG 2 1_555 B NA 102 D NA NA 1_555 B DG 31 B O6 DG 31 1_555 88.4 B DG 5 B O6 DG 5 1_555 B NA 102 D NA NA 1_555 B DG 31 B O6 DG 31 1_555 150.4 B DG 10 B O6 DG 10 1_555 B NA 102 D NA NA 1_555 B DG 31 B O6 DG 31 1_555 115.5 B DG 11 B O6 DG 11 1_555 B NA 102 D NA NA 1_555 B DG 31 B O6 DG 31 1_555 86.6 B DG 2 B O6 DG 2 1_555 B NA 102 D NA NA 1_555 B DG 32 B O6 DG 32 1_555 104.2 B DG 5 B O6 DG 5 1_555 B NA 102 D NA NA 1_555 B DG 32 B O6 DG 32 1_555 140.7 B DG 10 B O6 DG 10 1_555 B NA 102 D NA NA 1_555 B DG 32 B O6 DG 32 1_555 61.0 B DG 11 B O6 DG 11 1_555 B NA 102 D NA NA 1_555 B DG 32 B O6 DG 32 1_555 109.1 B DG 31 B O6 DG 31 1_555 B NA 102 D NA NA 1_555 B DG 32 B O6 DG 32 1_555 68.4 B OMC 3 O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE B OMC 3 C B OMG 6 O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE B OMG 6 G B DUZ 7 B DUZ 7 DU B DUZ 8 B DUZ 8 DU B UPE 9 B UPE 9 DU B DUZ 14 B DUZ 14 DU B DUZ 15 B DUZ 15 DU B A2M 16 B A2M 16 A B A2M 19 B A2M 19 A B DUZ 22 B DUZ 22 DU B DUZ 23 B DUZ 23 DU B DUZ 27 B DUZ 27 DU B OMC 28 O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE B OMC 28 C B DUZ 30 B DUZ 30 DU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A CG GLN 17 A CG GLN 19 1 Y 1 A CD GLN 17 A CD GLN 19 1 Y 1 A OE1 GLN 17 A OE1 GLN 19 1 Y 1 A NE2 GLN 17 A NE2 GLN 19 1 Y 1 A CG ARG 40 A CG ARG 42 1 Y 1 A CD ARG 40 A CD ARG 42 1 Y 1 A NE ARG 40 A NE ARG 42 1 Y 1 A CZ ARG 40 A CZ ARG 42 1 Y 1 A NH1 ARG 40 A NH1 ARG 42 1 Y 1 A NH2 ARG 40 A NH2 ARG 42 1 Y 1 A CG LYS 41 A CG LYS 43 1 Y 1 A CD LYS 41 A CD LYS 43 1 Y 1 A CE LYS 41 A CE LYS 43 1 Y 1 A NZ LYS 41 A NZ LYS 43 1 Y 1 A CG GLU 42 A CG GLU 44 1 Y 1 A CD GLU 42 A CD GLU 44 1 Y 1 A OE1 GLU 42 A OE1 GLU 44 1 Y 1 A OE2 GLU 42 A OE2 GLU 44 1 Y 1 A CG ASN 45 A CG ASN 47 1 Y 1 A OD1 ASN 45 A OD1 ASN 47 1 Y 1 A ND2 ASN 45 A ND2 ASN 47 1 Y 1 A CG LYS 46 A CG LYS 48 1 Y 1 A CD LYS 46 A CD LYS 48 1 Y 1 A CE LYS 46 A CE LYS 48 1 Y 1 A NZ LYS 46 A NZ LYS 48 1 Y 1 A CG ASN 61 A CG ASN 63 1 Y 1 A OD1 ASN 61 A OD1 ASN 63 1 Y 1 A ND2 ASN 61 A ND2 ASN 63 1 Y 1 A CG ASN 63 A CG ASN 65 1 Y 1 A OD1 ASN 63 A OD1 ASN 65 1 Y 1 A ND2 ASN 63 A ND2 ASN 65 1 Y 1 A CG LYS 66 A CG LYS 68 1 Y 1 A CD LYS 66 A CD LYS 68 1 Y 1 A CE LYS 66 A CE LYS 68 1 Y 1 A NZ LYS 66 A NZ LYS 68 1 Y 1 A CG LYS 70 A CG LYS 72 1 Y 1 A CD LYS 70 A CD LYS 72 1 Y 1 A CE LYS 70 A CE LYS 72 1 Y 1 A NZ LYS 70 A NZ LYS 72 1 Y 1 A CG GLN 75 A CG GLN 77 1 Y 1 A CD GLN 75 A CD GLN 77 1 Y 1 A OE1 GLN 75 A OE1 GLN 77 1 Y 1 A NE2 GLN 75 A NE2 GLN 77 1 Y 1 A CG PHE 78 A CG PHE 80 1 Y 1 A CD1 PHE 78 A CD1 PHE 80 1 Y 1 A CD2 PHE 78 A CD2 PHE 80 1 Y 1 A CE1 PHE 78 A CE1 PHE 80 1 Y 1 A CE2 PHE 78 A CE2 PHE 80 1 Y 1 A CZ PHE 78 A CZ PHE 80 1 Y 1 A CG GLU 80 A CG GLU 82 1 Y 1 A CD GLU 80 A CD GLU 82 1 Y 1 A OE1 GLU 80 A OE1 GLU 82 1 Y 1 A OE2 GLU 80 A OE2 GLU 82 1 Y 1 A CG GLU 81 A CG GLU 83 1 Y 1 A CD GLU 81 A CD GLU 83 1 Y 1 A OE1 GLU 81 A OE1 GLU 83 1 Y 1 A OE2 GLU 81 A OE2 GLU 83 1 Y 1 A CG LEU 84 A CG LEU 86 1 Y 1 A CD1 LEU 84 A CD1 LEU 86 1 Y 1 A CD2 LEU 84 A CD2 LEU 86 1 Y 1 A CG ASN 103 A CG ASN 105 1 Y 1 A OD1 ASN 103 A OD1 ASN 105 1 Y 1 A ND2 ASN 103 A ND2 ASN 105 1 Y 1 A CG GLU 106 A CG GLU 108 1 Y 1 A CD GLU 106 A CD GLU 108 1 Y 1 A OE1 GLU 106 A OE1 GLU 108 1 Y 1 A OE2 GLU 106 A OE2 GLU 108 1 Y 1 A CG GLU 109 A CG GLU 111 1 Y 1 A CD GLU 109 A CD GLU 111 1 Y 1 A OE1 GLU 109 A OE1 GLU 111 1 Y 1 A OE2 GLU 109 A OE2 GLU 111 1 Y 1 A CG1 ILE 136 A CG1 ILE 138 1 Y 1 A CG2 ILE 136 A CG2 ILE 138 1 Y 1 A CD1 ILE 136 A CD1 ILE 138 1 Y 1 A CG ASP 140 A CG ASP 142 1 Y 1 A OD1 ASP 140 A OD1 ASP 142 1 Y 1 A OD2 ASP 140 A OD2 ASP 142 1 Y 1 A CG LYS 150 A CG LYS 152 1 Y 1 A CD LYS 150 A CD LYS 152 1 Y 1 A CE LYS 150 A CE LYS 152 1 Y 1 A NZ LYS 150 A NZ LYS 152 1 Y 1 A CG ARG 179 A CG ARG 181 1 Y 1 A CD ARG 179 A CD ARG 181 1 Y 1 A NE ARG 179 A NE ARG 181 1 Y 1 A CZ ARG 179 A CZ ARG 181 1 Y 1 A NH1 ARG 179 A NH1 ARG 181 1 Y 1 A NH2 ARG 179 A NH2 ARG 181 1 Y 1 A CG GLN 183 A CG GLN 185 1 Y 1 A CD GLN 183 A CD GLN 185 1 Y 1 A OE1 GLN 183 A OE1 GLN 185 1 Y 1 A NE2 GLN 183 A NE2 GLN 185 1 Y 1 A CG MET 184 A CG MET 186 1 Y 1 A SD MET 184 A SD MET 186 1 Y 1 A CE MET 184 A CE MET 186 1 Y 1 B C5' A2M 19 B C5' A2M 19 1 Y 1 B C4' A2M 19 B C4' A2M 19 1 Y 1 B O4' A2M 19 B O4' A2M 19 1 Y 1 B C3' A2M 19 B C3' A2M 19 1 Y 1 B O3' A2M 19 B O3' A2M 19 1 Y 1 B C2' A2M 19 B C2' A2M 19 1 Y 1 B O2' A2M 19 B O2' A2M 19 1 Y 1 B C1' A2M 19 B C1' A2M 19 1 Y 1 B CM' A2M 19 B CM' A2M 19 1 Y 1 B N9 A2M 19 B N9 A2M 19 1 Y 1 B C8 A2M 19 B C8 A2M 19 1 Y 1 B N7 A2M 19 B N7 A2M 19 1 Y 1 B C5 A2M 19 B C5 A2M 19 1 Y 1 B C6 A2M 19 B C6 A2M 19 1 Y 1 B N6 A2M 19 B N6 A2M 19 1 Y 1 B N1 A2M 19 B N1 A2M 19 1 Y 1 B C2 A2M 19 B C2 A2M 19 1 Y 1 B N3 A2M 19 B N3 A2M 19 1 Y 1 B C4 A2M 19 B C4 A2M 19 1 Y 1 A MET -1 A MET 1 1 Y 1 A ALA 0 A ALA 2 1 Y 1 A PRO 1 A PRO 3 1 Y 1 A VAL 2 A VAL 4 1 Y 1 A PRO 3 A PRO 5 1 Y 1 A PRO 4 A PRO 6 1 Y 1 A GLY 5 A GLY 7 1 Y 1 A GLU 6 A GLU 8 1 Y 1 A ASP 7 A ASP 9 1 Y 1 A SER 8 A SER 10 1 Y 1 A LYS 9 A LYS 11 1 Y 1 A ASP 10 A ASP 12 1 Y 1 A VAL 11 A VAL 13 1 Y 1 A ALA 12 A ALA 14 1 Y 1 A ALA 13 A ALA 15 1 Y 1 A PRO 14 A PRO 16 1 Y 1 A HIS 15 A HIS 17 1 Y 1 A ASN 48 A ASN 50 1 Y 1 A MET 49 A MET 51 1 Y 1 A CYS 50 A CYS 52 1 Y 1 A GLU 51 A GLU 53 1 Y 1 A SER 52 A SER 54 1 Y 1 A SER 53 A SER 55 1 Y 1 A LYS 54 A LYS 56 1 Y 1 A GLU 55 A GLU 57 1 Y 1 A ALA 56 A ALA 58 1 Y 1 A LEU 57 A LEU 59 1 Y 1 A ALA 58 A ALA 60 1 Y 1 A GLU 59 A GLU 61 1 Y 1 A ASN 60 A ASN 62 1 Y 1 A LYS 131 A LYS 133 1 Y 1 A ASN 132 A ASN 134 1 Y 1 A LEU 133 A LEU 135 1 Y 1 A ASP 134 A ASP 136 1 Y 1 A ALA 135 A ALA 137 1 Y 1 B OMC 20 B OMC 20 1 Y 1 8.01 1.20 119.70 127.71 B B B C3' O3' P DUZ DUZ UPE 8 8 9 Y 1 -16.08 1.90 104.00 87.92 B B B O3' P O5' DUZ UPE UPE 8 9 9 Y 1 -8.96 0.80 109.40 100.44 B B B O5' C5' C4' DA DA DA 13 13 13 N 1 -8.76 0.70 108.00 99.24 B B B O4' C1' N9 DA DA DA 13 13 13 N 1 7.94 1.20 119.70 127.64 B B B C3' O3' P DUZ DUZ DUZ 14 14 15 Y 1 -34.58 2.20 105.20 70.62 B B B O3' P OP1 DUZ A2M A2M 15 16 16 Y 1 4.23 0.30 108.30 112.53 B B B O4' C1' N1 DC DC DC 18 18 18 N 1 -44.35 1.90 104.00 59.65 B B B O3' P O5' DC A2M A2M 18 19 19 Y 1 1.81 0.30 108.30 110.11 B B B O4' C1' N9 DA DA DA 25 25 25 N 1 4.56 0.30 108.30 112.86 B B B O4' C1' N9 DG DG DG 26 26 26 N 1 A THR 43 -92.78 -63.24 1 A SER 108 -76.96 29.60 59.79 11.15000 0.00000 0.00000 11.15000 0.00000 -22.30000 0.941 0.916 HYDROGENS HAVE BEEN ADDED IN THE 0.260 0.222 0.224 2.40 43.50 570 11384 5.000 14.870 0.151 RANDOM 1 THROUGHOUT 0.000 SAD WITH MR 0.087 0.056 0.80 0.80 1.40 PDB ENTRY 1IL6 MAXIMUM LIKELIHOOD MASK 2.40 43.50 29 1890 2 729 1130 0.010 0.021 1959 1.922 2.431 2779 4.915 5.000 148 45.308 24.186 43 16.021 15.000 195 21.769 15.000 7 0.128 0.200 315 0.005 0.020 1278 0.699 1.500 753 1.286 2.000 1193 1.610 3.000 1206 2.498 4.500 1586 0.4040 0.2800 2.46 35 777 20 99.15 65.61 2.400 4NI7 11411 -3.000 0.04000 1 26.8900 6.4 99.7 0.61400 2.40 2.46 3.100 1 6.4 100 phasing PHASER refinement REFMAC 5.5.0109 data reduction XDS data scaling XSCALE Crystal structure of human interleukin 6 in complex with a modified nucleotide aptamer (SOMAMER SL1025) 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N BIOMOLECULE: NULL SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON BURIED SURFACE AREA. REMARK: MONOMER A THR 20 A THR 22 HELX_P A ASN 45 A ASN 47 1 1 26 A ALA 68 A ALA 70 HELX_P A GLY 72 A GLY 74 5 2 5 A ASN 79 A ASN 81 HELX_P A GLN 102 A GLN 104 1 3 24 A SER 108 A SER 110 HELX_P A ALA 130 A ALA 132 1 4 23 A ASP 140 A ASP 142 HELX_P A GLN 154 A GLN 156 1 5 15 A ASN 155 A ASN 157 HELX_P A ARG 182 A ARG 184 1 6 28 disulf 2.035 A CYS 73 A SG CYS 75 1_555 A CYS 83 A SG CYS 85 1_555 covale 1.607 both B DG 2 B O3' DG 2 1_555 B OMC 3 B P OMC 3 1_555 covale 1.595 both B OMC 3 B O3' OMC 3 1_555 B DA 4 B P DA 4 1_555 covale 1.601 both B DG 5 B O3' DG 5 1_555 B OMG 6 B P OMG 6 1_555 covale 1.583 both B OMG 6 B O3' OMG 6 1_555 B DUZ 7 B P DUZ 7 1_555 covale 1.615 one B DUZ 7 B O3' DUZ 7 1_555 B DUZ 8 B P DUZ 8 1_555 covale 1.612 one B DUZ 8 B O3' DUZ 8 1_555 B UPE 9 B P UPE 9 1_555 covale 1.611 one B UPE 9 B O3' UPE 9 1_555 B DG 10 B P DG 10 1_555 covale 1.588 both B DG 11 B O3' DG 11 1_555 B 2JU 12 B P 2JU 12 1_555 covale 1.579 one B 2JU 12 B O3' 2JU 12 1_555 B DA 13 B P DA 13 1_555 covale 1.584 both B DA 13 B O3' DA 13 1_555 B DUZ 14 B P DUZ 14 1_555 covale 1.612 one B DUZ 14 B O3' DUZ 14 1_555 B DUZ 15 B P DUZ 15 1_555 covale 1.623 one B DUZ 15 B O3' DUZ 15 1_555 B A2M 16 B P A2M 16 1_555 covale 1.602 one B A2M 16 B O3' A2M 16 1_555 B DA 17 B P DA 17 1_555 covale 1.611 both B DC 18 B O3' DC 18 1_555 B A2M 19 B P A2M 19 1_555 covale 1.602 both B DG 21 B O3' DG 21 1_555 B DUZ 22 B P DUZ 22 1_555 covale 1.596 one B DUZ 22 B O3' DUZ 22 1_555 B DUZ 23 B P DUZ 23 1_555 covale 1.598 one B DUZ 23 B O3' DUZ 23 1_555 B DA 24 B P DA 24 1_555 covale 1.603 both B DG 26 B O3' DG 26 1_555 B DUZ 27 B P DUZ 27 1_555 covale 1.597 one B DUZ 27 B O3' DUZ 27 1_555 B OMC 28 B P OMC 28 1_555 covale 1.586 both B OMC 28 B O3' OMC 28 1_555 B DG 29 B P DG 29 1_555 covale 1.597 both B DG 29 B O3' DG 29 1_555 B DUZ 30 B P DUZ 30 1_555 covale 1.596 one B DUZ 30 B O3' DUZ 30 1_555 B DG 31 B P DG 31 1_555 metalc 2.450 B DG 1 B O6 DG 1 1_555 B NA 101 C NA NA 1_555 metalc 2.237 B DG 2 B O6 DG 2 1_555 B NA 102 D NA NA 1_555 metalc 2.413 B DG 5 B O6 DG 5 1_555 B NA 102 D NA NA 1_555 metalc 2.370 B OMG 6 B O6 OMG 6 1_555 B NA 101 C NA NA 1_555 metalc 2.594 B UPE 9 B O22 UPE 9 1_555 B NA 101 C NA NA 1_555 metalc 2.493 B DG 10 B O6 DG 10 1_555 B NA 101 C NA NA 1_555 metalc 2.626 B DG 10 B O6 DG 10 1_555 B NA 102 D NA NA 1_555 metalc 2.391 B DG 11 B O6 DG 11 1_555 B NA 102 D NA NA 1_555 metalc 2.337 B DG 31 B O6 DG 31 1_555 B NA 102 D NA NA 1_555 metalc 2.533 B DG 32 B O6 DG 32 1_555 B NA 101 C NA NA 1_555 metalc 3.110 B DG 32 B O6 DG 32 1_555 B NA 102 D NA NA 1_555 hydrog TYPE_6_PAIR B DG 1 B N1 DG 1 1_555 B OMG 6 B O6 OMG 6 1_555 hydrog TYPE_6_PAIR B DG 1 B N2 DG 1 1_555 B OMG 6 B N7 OMG 6 1_555 hydrog TYPE_6_PAIR B DG 1 B N7 DG 1 1_555 B DG 32 B N2 DG 32 1_555 hydrog TYPE_6_PAIR B DG 1 B O6 DG 1 1_555 B DG 32 B N1 DG 32 1_555 hydrog TYPE_6_PAIR B DG 2 B N7 DG 2 1_555 B DG 5 B N2 DG 5 1_555 hydrog TYPE_6_PAIR B DG 2 B O6 DG 2 1_555 B DG 5 B N1 DG 5 1_555 hydrog TYPE_6_PAIR B DG 2 B N1 DG 2 1_555 B DG 31 B O6 DG 31 1_555 hydrog TYPE_6_PAIR B DG 2 B N2 DG 2 1_555 B DG 31 B N7 DG 31 1_555 hydrog REVERSED WATSON-CRICK B OMC 3 B N3 OMC 3 1_555 B DG 29 B N2 DG 29 1_555 hydrog REVERSED WATSON-CRICK B OMC 3 B O2 OMC 3 1_555 B DG 29 B N1 DG 29 1_555 hydrog DA-DG MISPAIR B DA 4 B N6 DA 4 1_555 B DG 31 B O6 DG 31 1_555 hydrog TYPE_6_PAIR B DG 5 B N7 DG 5 1_555 B DG 11 B N2 DG 11 1_555 hydrog TYPE_6_PAIR B DG 5 B O6 DG 5 1_555 B DG 11 B N1 DG 11 1_555 hydrog TYPE_6_PAIR B OMG 6 B N1 OMG 6 1_555 B DG 10 B O6 DG 10 1_555 hydrog TYPE_6_PAIR B OMG 6 B N2 OMG 6 1_555 B DG 10 B N7 DG 10 1_555 hydrog TYPE_6_PAIR B DG 10 B N1 DG 10 1_555 B DG 32 B O6 DG 32 1_555 hydrog TYPE_6_PAIR B DG 10 B N2 DG 10 1_555 B DG 32 B N7 DG 32 1_555 hydrog TYPE_6_PAIR B DG 11 B N7 DG 11 1_555 B DG 31 B N2 DG 31 1_555 hydrog TYPE_6_PAIR B DG 11 B O6 DG 11 1_555 B DG 31 B N1 DG 31 1_555 hydrog TYPE_11_PAIR B DA 13 B N6 DA 13 1_555 B DG 26 B N3 DG 26 1_555 hydrog TYPE_11_PAIR B DA 13 B N7 DA 13 1_555 B DG 26 B N2 DG 26 1_555 hydrog DC-DG PAIR B DC 18 B O2 DC 18 1_555 B DG 21 B N1 DG 21 1_555 CYTOKINE/DNA Interleukin-6, CYTOKINE-DNA complex IL6_HUMAN UNP 1 28 P05231 APVPPGEDSKDVAAPHRQPLTSSERIDKQIRYILDGISALRKETCNKSNMCESSKEALAENNLNLPKMAEKDGCFQSGFN EETCLVKIITGLLEFEVYLEYLQNRFESSEEQARAVQMSTKVLIQFLQKKAKNLDAITTPDPTTNASLLTKLQAQNQWLQ DMTTHLILRSFKEFLQSSLRALRQM 4NI7 PDB 2 4NI7 28 212 4NI7 0 184 P05231 A 1 2 186 1 32 4NI7 1 32 4NI7 B 2 1 32 1 initiating methionine MET -1 4NI7 A P05231 UNP 1 BINDING SITE FOR RESIDUE NA B 101 B NA 101 Software 6 BINDING SITE FOR RESIDUE NA B 102 B NA 102 Software 10 B DG 1 B DG 1 6 1_555 B OMG 6 B OMG 6 6 1_555 B UPE 9 B UPE 9 6 1_555 B DG 10 B DG 10 6 1_555 B DG 32 B DG 32 6 1_555 B NA 102 D NA 6 1_555 B DG 1 B DG 1 10 1_555 B DG 2 B DG 2 10 1_555 B DA 4 B DA 4 10 1_555 B DG 5 B DG 5 10 1_555 B OMG 6 B OMG 6 10 1_555 B DG 10 B DG 10 10 1_555 B DG 11 B DG 11 10 1_555 B DG 31 B DG 31 10 1_555 B DG 32 B DG 32 10 1_555 B NA 101 C NA 10 1_555 145 P 32