0.022284 0.000000 0.000000 0.000000 0.022284 0.000000 0.000000 0.000000 0.009491 0.00000 0.00000 0.00000 Yedidi, R.S. Proteasa, G. Kovari, L.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 44.875 44.875 105.363 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 R C N 295 N O N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N N Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N C N 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N sing Y 313 N doub N 314 N sing Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing US J.Mol.Graph.Model. 1093-3263 53C 105 111 10.1016/j.jmgm.2014.06.010 25108107 A multi-drug resistant HIV-1 protease is resistant to the dimerization inhibitory activity of TLF-PafF. 2014 10.2210/pdb4nkk/pdb pdb_00004nkk 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD MAR CCD 165 mm SINGLE WAVELENGTH M x-ray 1 0.99 1.0 5ID-B APS 0.99 SYNCHROTRON APS BEAMLINE 5ID-B 10725.582 HIV-1 protease 1 man polymer 18.015 water 142 nat water no no PQITLWQRPVVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PANVIGRNLMTQIGCTLNF PQITLWQRPVVTIKIGGQLKEALLNTGADDTVLEEVNLPGRWKPKLIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PANVIGRNLMTQIGCTLNF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample pol 11676 Human immunodeficiency virus 1 562 Escherichia coli 1 2.47 50.26 VAPOR DIFFUSION, HANGING DROP 7.3 0.3-1.0 M NaCl (precipitant), pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif repository Initial release Database references Data collection Database references Refinement description 1 0 2014-07-09 1 1 2014-08-20 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details Apo protease Parent clinical isolate RCSB Y RCSB 2013-11-12 REL REL HOH water THESEvARE CHARACTERISTIC MUTATIONS OF THE ORIGINAL PATIENT ISOLATE MDR769 HIV-1 PROTEASE 3PJ6 PDB experimental model HOH 1 2 HOH HOH 101 A HOH 2 2 HOH HOH 102 A HOH 3 2 HOH HOH 103 A HOH 4 2 HOH HOH 104 A HOH 5 2 HOH HOH 105 A HOH 6 2 HOH HOH 106 A HOH 7 2 HOH HOH 107 A HOH 8 2 HOH HOH 108 A HOH 9 2 HOH HOH 109 A HOH 10 2 HOH HOH 110 A HOH 11 2 HOH HOH 111 A HOH 12 2 HOH HOH 112 A HOH 13 2 HOH HOH 113 A HOH 14 2 HOH HOH 114 A HOH 15 2 HOH HOH 115 A HOH 16 2 HOH HOH 116 A HOH 17 2 HOH HOH 117 A HOH 18 2 HOH HOH 118 A HOH 19 2 HOH HOH 119 A HOH 20 2 HOH HOH 120 A HOH 21 2 HOH HOH 121 A HOH 22 2 HOH HOH 122 A HOH 23 2 HOH HOH 123 A HOH 24 2 HOH HOH 124 A HOH 25 2 HOH HOH 125 A HOH 26 2 HOH HOH 126 A HOH 27 2 HOH HOH 127 A HOH 28 2 HOH HOH 128 A HOH 29 2 HOH HOH 129 A HOH 30 2 HOH HOH 130 A HOH 31 2 HOH HOH 131 A HOH 32 2 HOH HOH 132 A HOH 33 2 HOH HOH 133 A HOH 34 2 HOH HOH 134 A HOH 35 2 HOH HOH 135 A HOH 36 2 HOH HOH 136 A HOH 37 2 HOH HOH 137 A HOH 38 2 HOH HOH 138 A HOH 39 2 HOH HOH 139 A HOH 40 2 HOH HOH 140 A HOH 41 2 HOH HOH 141 A HOH 42 2 HOH HOH 142 A HOH 43 2 HOH HOH 143 A HOH 44 2 HOH HOH 144 A HOH 45 2 HOH HOH 145 A HOH 46 2 HOH HOH 146 A HOH 47 2 HOH HOH 147 A HOH 48 2 HOH HOH 148 A HOH 49 2 HOH HOH 149 A HOH 50 2 HOH HOH 150 A HOH 51 2 HOH HOH 151 A HOH 52 2 HOH HOH 152 A HOH 53 2 HOH HOH 153 A HOH 54 2 HOH HOH 154 A HOH 55 2 HOH HOH 155 A HOH 56 2 HOH HOH 156 A HOH 57 2 HOH HOH 157 A HOH 58 2 HOH HOH 158 A HOH 59 2 HOH HOH 159 A HOH 60 2 HOH HOH 160 A HOH 61 2 HOH HOH 161 A HOH 62 2 HOH HOH 162 A HOH 63 2 HOH HOH 163 A HOH 64 2 HOH HOH 164 A HOH 65 2 HOH HOH 165 A HOH 66 2 HOH HOH 166 A HOH 67 2 HOH HOH 167 A HOH 68 2 HOH HOH 168 A HOH 69 2 HOH HOH 169 A HOH 70 2 HOH HOH 170 A HOH 71 2 HOH HOH 171 A HOH 72 2 HOH HOH 172 A HOH 73 2 HOH HOH 173 A HOH 74 2 HOH HOH 174 A HOH 75 2 HOH HOH 175 A HOH 76 2 HOH HOH 176 A HOH 77 2 HOH HOH 177 A HOH 78 2 HOH HOH 178 A HOH 79 2 HOH HOH 179 A HOH 80 2 HOH HOH 180 A HOH 81 2 HOH HOH 181 A HOH 82 2 HOH HOH 182 A HOH 83 2 HOH HOH 183 A HOH 84 2 HOH HOH 184 A HOH 85 2 HOH HOH 185 A HOH 86 2 HOH HOH 186 A HOH 87 2 HOH HOH 187 A HOH 88 2 HOH HOH 188 A HOH 89 2 HOH HOH 189 A HOH 90 2 HOH HOH 190 A HOH 91 2 HOH HOH 191 A HOH 92 2 HOH HOH 192 A HOH 93 2 HOH HOH 193 A HOH 94 2 HOH HOH 194 A HOH 95 2 HOH HOH 195 A HOH 96 2 HOH HOH 196 A HOH 97 2 HOH HOH 197 A HOH 98 2 HOH HOH 198 A HOH 99 2 HOH HOH 199 A HOH 100 2 HOH HOH 200 A HOH 101 2 HOH HOH 201 A HOH 102 2 HOH HOH 202 A HOH 103 2 HOH HOH 203 A HOH 104 2 HOH HOH 204 A HOH 105 2 HOH HOH 205 A HOH 106 2 HOH HOH 206 A HOH 107 2 HOH HOH 207 A HOH 108 2 HOH HOH 208 A HOH 109 2 HOH HOH 209 A HOH 110 2 HOH HOH 210 A HOH 111 2 HOH HOH 211 A HOH 112 2 HOH HOH 212 A HOH 113 2 HOH HOH 213 A HOH 114 2 HOH HOH 214 A HOH 115 2 HOH HOH 215 A HOH 116 2 HOH HOH 216 A HOH 117 2 HOH HOH 217 A HOH 118 2 HOH HOH 218 A HOH 119 2 HOH HOH 219 A HOH 120 2 HOH HOH 220 A HOH 121 2 HOH HOH 221 A HOH 122 2 HOH HOH 222 A HOH 123 2 HOH HOH 223 A HOH 124 2 HOH HOH 224 A HOH 125 2 HOH HOH 225 A HOH 126 2 HOH HOH 226 A HOH 127 2 HOH HOH 227 A HOH 128 2 HOH HOH 228 A HOH 129 2 HOH HOH 229 A HOH 130 2 HOH HOH 230 A HOH 131 2 HOH HOH 231 A HOH 132 2 HOH HOH 232 A HOH 133 2 HOH HOH 233 A HOH 134 2 HOH HOH 234 A HOH 135 2 HOH HOH 235 A HOH 136 2 HOH HOH 236 A HOH 137 2 HOH HOH 237 A HOH 138 2 HOH HOH 238 A HOH 139 2 HOH HOH 239 A HOH 140 2 HOH HOH 240 A HOH 141 2 HOH HOH 241 A HOH 142 2 HOH HOH 242 A PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A GLN 7 n 7 GLN 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A VAL 10 n 10 VAL 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASN 25 n 25 ASN 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A VAL 36 n 36 VAL 36 A ASN 37 n 37 ASN 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A LEU 46 n 46 LEU 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A VAL 54 n 54 VAL 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A VAL 62 n 62 VAL 62 A PRO 63 n 63 PRO 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A VAL 71 n 71 VAL 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A ALA 82 n 82 ALA 82 A ASN 83 n 83 ASN 83 A VAL 84 n 84 VAL 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A MET 90 n 90 MET 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A author_and_software_defined_assembly PISA 2 dimeric 2940 -18 10620 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N LYS 45 A N LYS 45 A O VAL 56 A O VAL 56 A N ILE 64 A N ILE 64 A O VAL 71 A O VAL 71 A O LEU 76 A O LEU 76 A N LEU 33 A N LEU 33 A N VAL 32 A N VAL 32 A O VAL 84 A O VAL 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O ALA 22 A O ALA 22 A N VAL 11 A N VAL 11 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 1 A HOH 219 B HOH 1 A CB GLU 35 A CB GLU 35 0 Y 1 A A NZ O LYS HOH 55 203 2.07 1 A A O O HOH HOH 158 191 2.09 1 A A O O HOH HOH 158 195 2.15 1 A A NZ O LYS HOH 43 227 2.16 1 A A O O THR HOH 80 202 2.16 1 A A O O HOH HOH 113 207 1.77 1_555 3_455 1 A A O O HOH HOH 128 181 1.87 1_555 6_444 1 A A O O HOH HOH 181 190 2.16 1_555 6_544 0.2491 0.2039 0.2061 1.800 26.341 537 10575 5.08 99.91 0.15 1 1.34 MOLECULAR REPLACEMENT 23.13 0.90 1.11 3PJ6 ML FLAT BULK SOLVENT MODEL 1.800 26.341 142 895 0 0 753 0.007 767 1.113 1043 13.423 286 0.069 125 0.006 132 0.2720 0.2156 1.9811 147 2412 100.00 0.2623 0.2056 2.2676 132 2474 100.00 0.2682 0.2231 2.8564 129 2492 100.00 0.2284 0.1909 26.3436 129 2660 100.00 1.56 35.11 4NKK 0.06 1 data collection HKL-2000 phasing MOLREP refinement PHENIX (phenix.refine: 1.8.2_1309) data reduction MOSFLM data scaling SCALA Crystal structure of a multi-drug resistant clinical isolate-769 HIV-1 protease variant that is resistant to the dimerization inhibitory activity of TLF-PafF 1 N N 2 N N A GLY 86 A GLY 86 HELX_P A GLY 94 A GLY 94 1 1 9 HYDROLASE HIV, AIDS, HIV-1 protease, dimerization inhibitors, protease inhibitors, multidrug-resistance, clinical isolate 769, dimer protease, Hydrolase Q000H7_9HIV1 UNP 1 1 Q000H7 PQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDINLPGRWKPKMIGGIGGFVKVRQYDQVPIEICGHKVIGTVLVGPT PTNVIGRNLMTQIGCTLNF 1 99 4NKK 1 99 Q000H7 A 1 1 99 1 ILE engineered mutation VAL 10 4NKK A Q000H7 UNP 10 10 1 ASP engineered mutation ASN 25 4NKK A Q000H7 UNP 25 25 1 ASP SEE REMARK 999 GLU 35 4NKK A Q000H7 UNP 35 35 1 ILE SEE REMARK 999 VAL 36 4NKK A Q000H7 UNP 36 36 1 MET SEE REMARK 999 LEU 46 4NKK A Q000H7 UNP 46 46 1 THR SEE REMARK 999 ALA 82 4NKK A Q000H7 UNP 82 82 8 anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A LYS 43 A LYS 43 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A VAL 32 A VAL 32 A LEU 33 A LEU 33 A VAL 84 A VAL 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A VAL 10 A VAL 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 92 P 41 21 2