0.025583 0.000000 0.000000 0.000000 0.023797 0.000000 0.000000 0.000000 0.010970 0.00000 0.00000 0.00000 Hunter, J.C. Gurbani, D. Lim, S.M. Westover, K.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 39.088 42.022 91.159 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C14 H22 N6 O12 P2 528.305 5'-O-[(S)-{[(S)-[2-(acetylamino)ethoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]guanosine non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N MG N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C N 333 N O N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C N 351 N C N 352 N C N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 N C N 367 N O N 368 N P N 369 N P N 370 N C N 371 N N N 372 N O Y 373 N C N 374 N N N 375 N O Y 376 N C Y 377 N N N 378 N O Y 379 N C Y 380 N N N 381 N O N 382 R C N 383 N N N 384 N O N 385 R C N 386 N O N 387 S C N 388 N O N 389 R C N 390 N O N 391 N C N 392 N O N 393 N C N 394 N O N 395 N C N 396 N O N 397 N C N 398 N C N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub N 322 N sing Y 323 N doub N 324 N sing Y 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing Y 352 N sing Y 353 N doub Y 354 N doub N 355 N sing N 356 N doub Y 357 N sing N 358 N sing Y 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N doub N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N doub N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 111 8895 8900 10.1073/pnas.1404639111 24889603 In situ selectivity profiling and crystal structure of SML-8-73-1, an active site inhibitor of oncogenic K-Ras G12C. 2014 10.2210/pdb4nmm/pdb pdb_00004nmm 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2013-06-12 ADSC QUANTUM 315 ROSENBAUM-ROCK HIGH-RESOLUTION DOUBLE-CRYSTAL MONOCHROMATOR SINGLE WAVELENGTH M x-ray 1 0.97921 1.0 19-ID APS 0.97921 SYNCHROTRON APS BEAMLINE 19-ID 19374.902 GTPase KRas 3.6.5.2 UNP residues 1-169 G12C 1 man polymer 24.305 MAGNESIUM ION 1 syn non-polymer 528.305 5'-O-[(S)-{[(S)-[2-(acetylamino)ethoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]guanosine 1 syn non-polymer 18.015 water 125 nat water K-Ras 2, Ki-Ras, c-K-ras, c-Ki-ras, GTPase KRas, N-terminally processed no no GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL VREIRKHKEK GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL VREIRKHKEK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample KRAS, KRAS2, RASK2 9606 Homo sapiens 469008 Escherichia coli BL21 plasmid pJexpress401 1 1.93 36.34 4.0 0.2M MMT pH4.0, 28% PEG 6,000, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_conn_type struct_ref_seq_dif struct_site repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2014-06-04 1 1 2014-07-09 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn_type.id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Crystal Structure of a GDP-bound G12C Oncogenic Mutant of Human GTPase KRas Crystal Structure of GDP-bound Human KRas RCSB Y RCSB 2013-11-15 REL REL MG MAGNESIUM ION Y9Z 5'-O-[(S)-{[(S)-[2-(acetylamino)ethoxy](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]guanosine HOH water THE UNREACTED INHIBITOR IS 5'-O-[(S)-{[(S)-{2-[(CHLOROCARBONYL)AMINO]ETHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]GUANOSINE, THE CHLORO-ACETLY GROUP REACTS WITH CYS A12 RESIDUE ON THE PROTEIN TO FORM A THIO-ETHER LINKAGE BETWEEN C13 ATOM OF Y9Z AND SG ATOM of CYS A12 WITH THE CHLORINE ACTING AS A LEAVING GROUP. LIGAND Y9Z REPRESENT THE REACTED/BOUND FORM OF THE INHIBITOR. THE SEQUENCE MATCHES UNIPROT ENTRY P01116, ISOFORM 2B WITH IDENTIFIER P01116-2 4EPV PDB ENTRY 4EPV PDB experimental model MG 201 2 MG MG 201 A Y9Z 202 3 Y9Z Y9Z 202 A HOH 301 4 HOH HOH 301 A HOH 302 4 HOH HOH 302 A HOH 303 4 HOH HOH 303 A HOH 304 4 HOH HOH 304 A HOH 305 4 HOH HOH 305 A HOH 306 4 HOH HOH 306 A HOH 307 4 HOH HOH 307 A HOH 308 4 HOH HOH 308 A HOH 309 4 HOH HOH 309 A HOH 310 4 HOH HOH 310 A HOH 311 4 HOH HOH 311 A HOH 312 4 HOH HOH 312 A HOH 313 4 HOH HOH 313 A HOH 314 4 HOH HOH 314 A HOH 315 4 HOH HOH 315 A HOH 316 4 HOH HOH 316 A HOH 317 4 HOH HOH 317 A HOH 318 4 HOH HOH 318 A HOH 319 4 HOH HOH 319 A HOH 320 4 HOH HOH 320 A HOH 321 4 HOH HOH 321 A HOH 322 4 HOH HOH 322 A HOH 323 4 HOH HOH 323 A HOH 324 4 HOH HOH 324 A HOH 325 4 HOH HOH 325 A HOH 326 4 HOH HOH 326 A HOH 327 4 HOH HOH 327 A HOH 328 4 HOH HOH 328 A HOH 329 4 HOH HOH 329 A HOH 330 4 HOH HOH 330 A HOH 331 4 HOH HOH 331 A HOH 332 4 HOH HOH 332 A HOH 333 4 HOH HOH 333 A HOH 334 4 HOH HOH 334 A HOH 335 4 HOH HOH 335 A HOH 336 4 HOH HOH 336 A HOH 337 4 HOH HOH 337 A HOH 338 4 HOH HOH 338 A HOH 339 4 HOH HOH 339 A HOH 340 4 HOH HOH 340 A HOH 341 4 HOH HOH 341 A HOH 342 4 HOH HOH 342 A HOH 343 4 HOH HOH 343 A HOH 344 4 HOH HOH 344 A HOH 345 4 HOH HOH 345 A HOH 346 4 HOH HOH 346 A HOH 347 4 HOH HOH 347 A HOH 348 4 HOH HOH 348 A HOH 349 4 HOH HOH 349 A HOH 350 4 HOH HOH 350 A HOH 351 4 HOH HOH 351 A HOH 352 4 HOH HOH 352 A HOH 353 4 HOH HOH 353 A HOH 354 4 HOH HOH 354 A HOH 355 4 HOH HOH 355 A HOH 356 4 HOH HOH 356 A HOH 357 4 HOH HOH 357 A HOH 358 4 HOH HOH 358 A HOH 359 4 HOH HOH 359 A HOH 360 4 HOH HOH 360 A HOH 361 4 HOH HOH 361 A HOH 362 4 HOH HOH 362 A HOH 363 4 HOH HOH 363 A HOH 364 4 HOH HOH 364 A HOH 365 4 HOH HOH 365 A HOH 366 4 HOH HOH 366 A HOH 367 4 HOH HOH 367 A HOH 368 4 HOH HOH 368 A HOH 369 4 HOH HOH 369 A HOH 370 4 HOH HOH 370 A HOH 371 4 HOH HOH 371 A HOH 372 4 HOH HOH 372 A HOH 373 4 HOH HOH 373 A HOH 374 4 HOH HOH 374 A HOH 375 4 HOH HOH 375 A HOH 376 4 HOH HOH 376 A HOH 377 4 HOH HOH 377 A HOH 378 4 HOH HOH 378 A HOH 379 4 HOH HOH 379 A HOH 380 4 HOH HOH 380 A HOH 381 4 HOH HOH 381 A HOH 382 4 HOH HOH 382 A HOH 383 4 HOH HOH 383 A HOH 384 4 HOH HOH 384 A HOH 385 4 HOH HOH 385 A HOH 386 4 HOH HOH 386 A HOH 387 4 HOH HOH 387 A HOH 388 4 HOH HOH 388 A HOH 389 4 HOH HOH 389 A HOH 390 4 HOH HOH 390 A HOH 391 4 HOH HOH 391 A HOH 392 4 HOH HOH 392 A HOH 393 4 HOH HOH 393 A HOH 394 4 HOH HOH 394 A HOH 395 4 HOH HOH 395 A HOH 396 4 HOH HOH 396 A HOH 397 4 HOH HOH 397 A HOH 398 4 HOH HOH 398 A HOH 399 4 HOH HOH 399 A HOH 400 4 HOH HOH 400 A HOH 401 4 HOH HOH 401 A HOH 402 4 HOH HOH 402 A HOH 403 4 HOH HOH 403 A HOH 404 4 HOH HOH 404 A HOH 405 4 HOH HOH 405 A HOH 406 4 HOH HOH 406 A HOH 407 4 HOH HOH 407 A HOH 408 4 HOH HOH 408 A HOH 409 4 HOH HOH 409 A HOH 410 4 HOH HOH 410 A HOH 411 4 HOH HOH 411 A HOH 412 4 HOH HOH 412 A HOH 413 4 HOH HOH 413 A HOH 414 4 HOH HOH 414 A HOH 415 4 HOH HOH 415 A HOH 416 4 HOH HOH 416 A HOH 417 4 HOH HOH 417 A HOH 418 4 HOH HOH 418 A HOH 419 4 HOH HOH 419 A HOH 420 4 HOH HOH 420 A HOH 421 4 HOH HOH 421 A HOH 422 4 HOH HOH 422 A HOH 423 4 HOH HOH 423 A HOH 424 4 HOH HOH 424 A HOH 425 4 HOH HOH 425 A GLY 0 n 1 GLY 0 A MET 1 n 2 MET 1 A THR 2 n 3 THR 2 A GLU 3 n 4 GLU 3 A TYR 4 n 5 TYR 4 A LYS 5 n 6 LYS 5 A LEU 6 n 7 LEU 6 A VAL 7 n 8 VAL 7 A VAL 8 n 9 VAL 8 A VAL 9 n 10 VAL 9 A GLY 10 n 11 GLY 10 A ALA 11 n 12 ALA 11 A CYS 12 n 13 CYS 12 A GLY 13 n 14 GLY 13 A VAL 14 n 15 VAL 14 A GLY 15 n 16 GLY 15 A LYS 16 n 17 LYS 16 A SER 17 n 18 SER 17 A ALA 18 n 19 ALA 18 A LEU 19 n 20 LEU 19 A THR 20 n 21 THR 20 A ILE 21 n 22 ILE 21 A GLN 22 n 23 GLN 22 A LEU 23 n 24 LEU 23 A ILE 24 n 25 ILE 24 A GLN 25 n 26 GLN 25 A ASN 26 n 27 ASN 26 A HIS 27 n 28 HIS 27 A PHE 28 n 29 PHE 28 A VAL 29 n 30 VAL 29 A ASP 30 n 31 ASP 30 A GLU 31 n 32 GLU 31 A TYR 32 n 33 TYR 32 A ASP 33 n 34 ASP 33 A PRO 34 n 35 PRO 34 A THR 35 n 36 THR 35 A ILE 36 n 37 ILE 36 A GLU 37 n 38 GLU 37 A ASP 38 n 39 ASP 38 A SER 39 n 40 SER 39 A TYR 40 n 41 TYR 40 A ARG 41 n 42 ARG 41 A LYS 42 n 43 LYS 42 A GLN 43 n 44 GLN 43 A VAL 44 n 45 VAL 44 A VAL 45 n 46 VAL 45 A ILE 46 n 47 ILE 46 A ASP 47 n 48 ASP 47 A GLY 48 n 49 GLY 48 A GLU 49 n 50 GLU 49 A THR 50 n 51 THR 50 A CYS 51 n 52 CYS 51 A LEU 52 n 53 LEU 52 A LEU 53 n 54 LEU 53 A ASP 54 n 55 ASP 54 A ILE 55 n 56 ILE 55 A LEU 56 n 57 LEU 56 A ASP 57 n 58 ASP 57 A THR 58 n 59 THR 58 A ALA 59 n 60 ALA 59 A GLY 60 n 61 GLY 60 A GLN 61 n 62 GLN 61 A GLU 62 n 63 GLU 62 A GLU 63 n 64 GLU 63 A TYR 64 n 65 TYR 64 A SER 65 n 66 SER 65 A ALA 66 n 67 ALA 66 A MET 67 n 68 MET 67 A ARG 68 n 69 ARG 68 A ASP 69 n 70 ASP 69 A GLN 70 n 71 GLN 70 A TYR 71 n 72 TYR 71 A MET 72 n 73 MET 72 A ARG 73 n 74 ARG 73 A THR 74 n 75 THR 74 A GLY 75 n 76 GLY 75 A GLU 76 n 77 GLU 76 A GLY 77 n 78 GLY 77 A PHE 78 n 79 PHE 78 A LEU 79 n 80 LEU 79 A CYS 80 n 81 CYS 80 A VAL 81 n 82 VAL 81 A PHE 82 n 83 PHE 82 A ALA 83 n 84 ALA 83 A ILE 84 n 85 ILE 84 A ASN 85 n 86 ASN 85 A ASN 86 n 87 ASN 86 A THR 87 n 88 THR 87 A LYS 88 n 89 LYS 88 A SER 89 n 90 SER 89 A PHE 90 n 91 PHE 90 A GLU 91 n 92 GLU 91 A ASP 92 n 93 ASP 92 A ILE 93 n 94 ILE 93 A HIS 94 n 95 HIS 94 A HIS 95 n 96 HIS 95 A TYR 96 n 97 TYR 96 A ARG 97 n 98 ARG 97 A GLU 98 n 99 GLU 98 A GLN 99 n 100 GLN 99 A ILE 100 n 101 ILE 100 A LYS 101 n 102 LYS 101 A ARG 102 n 103 ARG 102 A VAL 103 n 104 VAL 103 A LYS 104 n 105 LYS 104 A ASP 105 n 106 ASP 105 A SER 106 n 107 SER 106 A GLU 107 n 108 GLU 107 A ASP 108 n 109 ASP 108 A VAL 109 n 110 VAL 109 A PRO 110 n 111 PRO 110 A MET 111 n 112 MET 111 A VAL 112 n 113 VAL 112 A LEU 113 n 114 LEU 113 A VAL 114 n 115 VAL 114 A GLY 115 n 116 GLY 115 A ASN 116 n 117 ASN 116 A LYS 117 n 118 LYS 117 A CYS 118 n 119 CYS 118 A ASP 119 n 120 ASP 119 A LEU 120 n 121 LEU 120 A PRO 121 n 122 PRO 121 A SER 122 n 123 SER 122 A ARG 123 n 124 ARG 123 A THR 124 n 125 THR 124 A VAL 125 n 126 VAL 125 A ASP 126 n 127 ASP 126 A THR 127 n 128 THR 127 A LYS 128 n 129 LYS 128 A GLN 129 n 130 GLN 129 A ALA 130 n 131 ALA 130 A GLN 131 n 132 GLN 131 A ASP 132 n 133 ASP 132 A LEU 133 n 134 LEU 133 A ALA 134 n 135 ALA 134 A ARG 135 n 136 ARG 135 A SER 136 n 137 SER 136 A TYR 137 n 138 TYR 137 A GLY 138 n 139 GLY 138 A ILE 139 n 140 ILE 139 A PRO 140 n 141 PRO 140 A PHE 141 n 142 PHE 141 A ILE 142 n 143 ILE 142 A GLU 143 n 144 GLU 143 A THR 144 n 145 THR 144 A SER 145 n 146 SER 145 A ALA 146 n 147 ALA 146 A LYS 147 n 148 LYS 147 A THR 148 n 149 THR 148 A ARG 149 n 150 ARG 149 A GLN 150 n 151 GLN 150 A GLY 151 n 152 GLY 151 A VAL 152 n 153 VAL 152 A ASP 153 n 154 ASP 153 A ASP 154 n 155 ASP 154 A ALA 155 n 156 ALA 155 A PHE 156 n 157 PHE 156 A TYR 157 n 158 TYR 157 A THR 158 n 159 THR 158 A LEU 159 n 160 LEU 159 A VAL 160 n 161 VAL 160 A ARG 161 n 162 ARG 161 A GLU 162 n 163 GLU 162 A ILE 163 n 164 ILE 163 A ARG 164 n 165 ARG 164 A LYS 165 n 166 LYS 165 A HIS 166 n 167 HIS 166 A LYS 167 n 168 LYS 167 A GLU 168 n 169 GLU 168 A LYS 169 n 170 LYS 169 A author_and_software_defined_assembly PISA 1 monomeric A SER 17 A OG SER 18 1_555 A MG 201 B MG MG 1_555 A Y9Z 202 C O8 Y9Z 1_555 94.6 A SER 17 A OG SER 18 1_555 A MG 201 B MG MG 1_555 A HOH 306 D O HOH 1_555 78.4 A Y9Z 202 C O8 Y9Z 1_555 A MG 201 B MG MG 1_555 A HOH 306 D O HOH 1_555 85.7 A SER 17 A OG SER 18 1_555 A MG 201 B MG MG 1_555 A HOH 424 D O HOH 1_555 91.9 A Y9Z 202 C O8 Y9Z 1_555 A MG 201 B MG MG 1_555 A HOH 424 D O HOH 1_555 171.7 A HOH 306 D O HOH 1_555 A MG 201 B MG MG 1_555 A HOH 424 D O HOH 1_555 90.5 A SER 17 A OG SER 18 1_555 A MG 201 B MG MG 1_555 A HOH 425 D O HOH 1_555 94.4 A Y9Z 202 C O8 Y9Z 1_555 A MG 201 B MG MG 1_555 A HOH 425 D O HOH 1_555 105.1 A HOH 306 D O HOH 1_555 A MG 201 B MG MG 1_555 A HOH 425 D O HOH 1_555 167.6 A HOH 424 D O HOH 1_555 A MG 201 B MG MG 1_555 A HOH 425 D O HOH 1_555 79.5 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TYR 40 A N TYR 41 A O ILE 55 A O ILE 56 A O LEU 56 A O LEU 57 A N LEU 6 A N LEU 7 A N VAL 9 A N VAL 10 A O VAL 81 A O VAL 82 A N PHE 82 A N PHE 83 A O ASN 116 A O ASN 117 A N LEU 113 A N LEU 114 A O ILE 142 A O ILE 143 1 3.08 0.50 120.30 123.38 A A A NE CZ NH1 ARG ARG ARG 123 123 123 N 1 A LYS 117 71.10 30.58 1 A ARG 149 74.32 -1.97 25.81 -2.46000 0.00000 0.00000 3.17000 0.00000 -0.71000 0.957 0.931 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.237 0.184 0.186 1.89 45.58 615 12363 11695 5.000 4.717 0.133 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.185 0.166 0.80 0.80 1.20 PDB ENTRY 4EPV MAXIMUM LIKELIHOOD MASK 1.89 45.58 125 1517 35 0 1357 0.015 0.019 1419 0.007 0.020 1332 1.364 1.992 1921 0.768 3.001 3072 5.011 5.000 171 36.225 24.493 69 12.006 15.000 255 20.314 15.000 10 0.075 0.200 213 0.008 0.020 1589 0.004 0.020 318 2.152 2.293 683 2.108 2.289 680 2.963 3.430 851 2.974 3.432 851 3.257 2.770 736 3.259 2.771 734 5.140 4.005 1068 6.816 20.084 1703 6.723 19.749 1658 0.2600 0.3060 1.94 28 598 20 67.75 23.29 1.890 50.000 4NMM 12363 2.000 0.12600 1 14.4690 5.800 99.8 0.88300 1.90 1.93 2.036 1 5.10 100.0 data collection HKL-3000 phasing PHASER refinement REFMAC 5.8.0049 data reduction HKL-3000 data scaling HKL-3000 Crystal Structure of a G12C Oncogenic Variant of Human KRas Bound to a Novel GDP Competitive Covalent Inhibitor 1 N N 2 N N 3 N N 4 N N A GLY 15 A GLY 16 HELX_P A ASN 26 A ASN 27 1 1 12 A TYR 64 A TYR 65 HELX_P A GLY 75 A GLY 76 1 2 12 A ASN 86 A ASN 87 HELX_P A ASP 105 A ASP 106 1 3 20 A ASP 126 A ASP 127 HELX_P A GLY 138 A GLY 139 1 4 13 A GLY 151 A GLY 152 HELX_P A GLU 168 A GLU 169 1 5 18 covale 1.804 none B A CYS 12 A SG CYS 13 1_555 A Y9Z 202 C C13 Y9Z 1_555 metalc 2.178 A SER 17 A OG SER 18 1_555 A MG 201 B MG MG 1_555 metalc 1.859 A MG 201 B MG MG 1_555 A Y9Z 202 C O8 Y9Z 1_555 metalc 2.370 A MG 201 B MG MG 1_555 A HOH 306 D O HOH 1_555 metalc 2.254 A MG 201 B MG MG 1_555 A HOH 424 D O HOH 1_555 metalc 2.340 A MG 201 B MG MG 1_555 A HOH 425 D O HOH 1_555 HYDROLASE/HYDROLASE INHIBITOR Small GTPase, GDP bound, oncogenic mutation, covalent inhibitor, HYDROLASE-HYDROLASE INHIBITOR complex RASK_HUMAN UNP 1 1 P01116 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLV REIRQYRLK 1 169 4NMM 1 169 P01116 A 1 2 170 1 expression tag GLY 0 4NMM A P01116 UNP 1 1 GLY engineered mutation CYS 12 4NMM A P01116 UNP 12 13 6 anti-parallel parallel parallel parallel parallel A ASP 38 A ASP 39 A ILE 46 A ILE 47 A GLU 49 A GLU 50 A ASP 57 A ASP 58 A GLU 3 A GLU 4 A VAL 9 A VAL 10 A GLY 77 A GLY 78 A ALA 83 A ALA 84 A MET 111 A MET 112 A ASN 116 A ASN 117 A PHE 141 A PHE 142 A GLU 143 A GLU 144 BINDING SITE FOR RESIDUE MG A 201 A MG 201 Software 6 BINDING SITE FOR RESIDUE Y9Z A 202 A Y9Z 202 Software 26 A SER 17 A SER 18 6 1_555 A TYR 32 A TYR 33 6 1_555 A Y9Z 202 C Y9Z 6 1_555 A HOH 306 D HOH 6 1_555 A HOH 424 D HOH 6 1_555 A HOH 425 D HOH 6 1_555 A CYS 12 A CYS 13 26 1_555 A GLY 13 A GLY 14 26 1_555 A VAL 14 A VAL 15 26 1_555 A GLY 15 A GLY 16 26 1_555 A LYS 16 A LYS 17 26 1_555 A SER 17 A SER 18 26 1_555 A ALA 18 A ALA 19 26 1_555 A PHE 28 A PHE 29 26 1_555 A VAL 29 A VAL 30 26 1_555 A ASP 30 A ASP 31 26 1_555 A TYR 32 A TYR 33 26 1_555 A PRO 34 A PRO 35 26 1_555 A ALA 59 A ALA 60 26 1_555 A ASN 116 A ASN 117 26 1_555 A LYS 117 A LYS 118 26 1_555 A ASP 119 A ASP 120 26 1_555 A LEU 120 A LEU 121 26 1_555 A SER 145 A SER 146 26 1_555 A ALA 146 A ALA 147 26 1_555 A LYS 147 A LYS 148 26 1_555 A MG 201 B MG 26 1_555 A HOH 306 D HOH 26 1_555 A HOH 336 D HOH 26 1_555 A HOH 375 D HOH 26 1_555 A HOH 411 D HOH 26 1_555 A HOH 425 D HOH 26 1_555 19 P 21 21 21