0.010898
-0.000000
-0.000000
0.000000
0.010898
-0.000000
0.000000
0.000000
0.011675
0.000000
0.000000
0.000000
Khan, J.A.
Camac, D.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
91.760
91.760
85.651
C23 H35 Cl N2 O4
438.988
N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-3-hydroxy-3-methylbutanamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
CL
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
N
8
S
C
N
9
N
C
N
10
N
O
N
11
N
C
N
12
N
C
N
13
N
C
N
14
N
C
N
15
N
N
N
16
N
C
N
17
N
C
N
18
N
O
N
19
R
C
N
20
N
C
N
21
N
C
N
22
N
C
N
23
N
N
N
24
N
C
N
25
N
O
N
26
N
C
N
27
N
C
N
28
N
O
N
29
N
C
N
30
N
C
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
N
N
67
S
C
N
68
N
C
N
69
N
O
N
70
N
C
N
71
N
O
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
N
N
80
S
C
N
81
N
C
N
82
N
O
N
83
N
C
N
84
N
C
N
85
N
C
N
86
N
N
N
87
N
C
N
88
N
N
N
89
N
N
N
90
N
O
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
N
N
140
R
C
N
141
N
C
N
142
N
O
N
143
N
C
N
144
N
S
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
N
N
154
S
C
N
155
N
C
N
156
N
O
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
N
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
S
C
N
175
N
C
N
176
N
O
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
O
N
182
N
O
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
N
C
N
194
N
C
N
195
N
O
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
C
N
203
N
O
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
Y
221
N
C
Y
222
N
N
Y
223
N
C
Y
224
N
C
Y
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
S
C
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
N
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
C
N
315
N
S
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
O
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
R
C
N
388
N
O
N
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
N
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
N
N
452
S
C
N
453
N
C
N
454
N
O
N
455
N
C
N
456
N
C
N
457
N
C
N
458
N
O
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
Y
9
N
doub
Y
10
N
sing
N
11
N
sing
Y
12
N
sing
N
13
N
sing
Y
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
Y
21
N
doub
Y
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
doub
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
doub
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
Y
219
N
sing
Y
220
N
doub
Y
221
N
doub
N
222
N
sing
Y
223
N
sing
N
224
N
sing
Y
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
Y
327
N
doub
Y
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
doub
N
332
N
sing
Y
333
N
doub
N
334
N
sing
Y
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
Y
424
N
doub
Y
425
N
sing
Y
426
N
sing
N
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
US
J.Med.Chem.
JMCMAR
0151
0022-2623
57
7550
7564
10.1021/jm5003167
25101488
Discovery of the CCR1 antagonist, BMS-817399, for the treatment of rheumatoid arthritis.
2014
10.2210/pdb4ny9/pdb
pdb_00004ny9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100.0
1
CCD
2008-03-21
RAYONIX MX-300
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
1.0
1.0
22-ID
APS
1
1.0
SYNCHROTRON
APS BEAMLINE 22-ID
33447.750
Nuclear receptor subfamily 1 group I member 2
unp residues 142-431
1
man
polymer
438.988
N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-3-hydroxy-3-methylbutanamide
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
18.015
water
15
nat
water
Orphan nuclear receptor PAR1, Orphan nuclear receptor PXR, Pregnane X receptor, Steroid and xenobiotic receptor, SXR
no
no
GLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGS
VWNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC
GRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNR
PQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLMQELFGI
GLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGS
VWNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC
GRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNR
PQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLMQELFGI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
NR1I2, PXR
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
PLASMID
pCO7
1
2.69
58.60
VAPOR DIFFUSION, HANGING DROP
7.8
0.1M imidazole, 8-10%(V/V)isopropanol. Apo crystal was soaked with 5 mM compound and Crystals harvested next day using 32% ethylene glycol as cryoprotectant, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 296K
296
software
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Database references
Refinement description
Data collection
Database references
Derived calculations
1
0
2014-08-27
1
1
2014-12-10
1
2
2017-11-22
1
3
2024-02-28
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-12-10
REL
REL
2Q4
N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-3-hydroxy-3-methylbutanamide
GOL
GLYCEROL
HOH
water
LG1
1
2
2Q4
2Q4
501
A
GOL
1
3
GOL
GOL
502
A
HOH
1
4
HOH
HOH
601
A
HOH
2
4
HOH
HOH
602
A
HOH
3
4
HOH
HOH
603
A
HOH
4
4
HOH
HOH
604
A
HOH
5
4
HOH
HOH
605
A
HOH
6
4
HOH
HOH
606
A
HOH
7
4
HOH
HOH
607
A
HOH
9
4
HOH
HOH
608
A
HOH
10
4
HOH
HOH
609
A
HOH
11
4
HOH
HOH
610
A
HOH
13
4
HOH
HOH
611
A
HOH
16
4
HOH
HOH
612
A
HOH
18
4
HOH
HOH
613
A
HOH
19
4
HOH
HOH
614
A
HOH
20
4
HOH
HOH
615
A
GLY
142
n
1
GLY
142
A
LEU
143
n
2
LEU
143
A
THR
144
n
3
THR
144
A
GLU
145
n
4
GLU
145
A
GLU
146
n
5
GLU
146
A
GLN
147
n
6
GLN
147
A
ARG
148
n
7
ARG
148
A
MET
149
n
8
MET
149
A
MET
150
n
9
MET
150
A
ILE
151
n
10
ILE
151
A
ARG
152
n
11
ARG
152
A
GLU
153
n
12
GLU
153
A
LEU
154
n
13
LEU
154
A
MET
155
n
14
MET
155
A
ASP
156
n
15
ASP
156
A
ALA
157
n
16
ALA
157
A
GLN
158
n
17
GLN
158
A
MET
159
n
18
MET
159
A
LYS
160
n
19
LYS
160
A
THR
161
n
20
THR
161
A
PHE
162
n
21
PHE
162
A
ASP
163
n
22
ASP
163
A
THR
164
n
23
THR
164
A
THR
165
n
24
THR
165
A
PHE
166
n
25
PHE
166
A
SER
167
n
26
SER
167
A
HIS
168
n
27
HIS
168
A
PHE
169
n
28
PHE
169
A
LYS
170
n
29
LYS
170
A
ASN
171
n
30
ASN
171
A
PHE
172
n
31
PHE
172
A
ARG
173
n
32
ARG
173
A
LEU
174
n
33
LEU
174
A
PRO
175
n
34
PRO
175
A
GLY
176
n
35
GLY
176
A
n
36
177
A
n
37
178
A
n
38
179
A
n
39
180
A
n
40
181
A
n
41
182
A
n
42
183
A
n
43
184
A
n
44
185
A
n
45
186
A
n
46
187
A
n
47
188
A
n
48
189
A
n
49
190
A
n
50
191
A
n
51
192
A
n
52
193
A
n
53
194
A
n
54
195
A
n
55
196
A
n
56
197
A
n
57
198
A
n
58
199
A
n
59
200
A
GLN
201
n
60
GLN
201
A
VAL
202
n
61
VAL
202
A
ARG
203
n
62
ARG
203
A
LYS
204
n
63
LYS
204
A
ASP
205
n
64
ASP
205
A
LEU
206
n
65
LEU
206
A
CYS
207
n
66
CYS
207
A
SER
208
n
67
SER
208
A
LEU
209
n
68
LEU
209
A
LYS
210
n
69
LYS
210
A
VAL
211
n
70
VAL
211
A
SER
212
n
71
SER
212
A
LEU
213
n
72
LEU
213
A
GLN
214
n
73
GLN
214
A
LEU
215
n
74
LEU
215
A
ARG
216
n
75
ARG
216
A
GLY
217
n
76
GLY
217
A
GLU
218
n
77
GLU
218
A
ASP
219
n
78
ASP
219
A
GLY
220
n
79
GLY
220
A
SER
221
n
80
SER
221
A
VAL
222
n
81
VAL
222
A
TRP
223
n
82
TRP
223
A
ASN
224
n
83
ASN
224
A
TYR
225
n
84
TYR
225
A
LYS
226
n
85
LYS
226
A
PRO
227
n
86
PRO
227
A
PRO
228
n
87
PRO
228
A
ALA
229
n
88
ALA
229
A
ASP
230
n
89
ASP
230
A
SER
231
n
90
SER
231
A
GLY
232
n
91
GLY
232
A
GLY
233
n
92
GLY
233
A
LYS
234
n
93
LYS
234
A
GLU
235
n
94
GLU
235
A
ILE
236
n
95
ILE
236
A
PHE
237
n
96
PHE
237
A
SER
238
n
97
SER
238
A
LEU
239
n
98
LEU
239
A
LEU
240
n
99
LEU
240
A
PRO
241
n
100
PRO
241
A
HIS
242
n
101
HIS
242
A
MET
243
n
102
MET
243
A
ALA
244
n
103
ALA
244
A
ASP
245
n
104
ASP
245
A
MET
246
n
105
MET
246
A
SER
247
n
106
SER
247
A
THR
248
n
107
THR
248
A
TYR
249
n
108
TYR
249
A
MET
250
n
109
MET
250
A
PHE
251
n
110
PHE
251
A
LYS
252
n
111
LYS
252
A
GLY
253
n
112
GLY
253
A
ILE
254
n
113
ILE
254
A
ILE
255
n
114
ILE
255
A
SER
256
n
115
SER
256
A
PHE
257
n
116
PHE
257
A
ALA
258
n
117
ALA
258
A
LYS
259
n
118
LYS
259
A
VAL
260
n
119
VAL
260
A
ILE
261
n
120
ILE
261
A
SER
262
n
121
SER
262
A
TYR
263
n
122
TYR
263
A
PHE
264
n
123
PHE
264
A
ARG
265
n
124
ARG
265
A
ASP
266
n
125
ASP
266
A
LEU
267
n
126
LEU
267
A
PRO
268
n
127
PRO
268
A
ILE
269
n
128
ILE
269
A
GLU
270
n
129
GLU
270
A
ASP
271
n
130
ASP
271
A
GLN
272
n
131
GLN
272
A
ILE
273
n
132
ILE
273
A
SER
274
n
133
SER
274
A
LEU
275
n
134
LEU
275
A
LEU
276
n
135
LEU
276
A
LYS
277
n
136
LYS
277
A
GLY
278
n
137
GLY
278
A
ALA
279
n
138
ALA
279
A
ALA
280
n
139
ALA
280
A
PHE
281
n
140
PHE
281
A
GLU
282
n
141
GLU
282
A
LEU
283
n
142
LEU
283
A
CYS
284
n
143
CYS
284
A
GLN
285
n
144
GLN
285
A
LEU
286
n
145
LEU
286
A
ARG
287
n
146
ARG
287
A
PHE
288
n
147
PHE
288
A
ASN
289
n
148
ASN
289
A
THR
290
n
149
THR
290
A
VAL
291
n
150
VAL
291
A
PHE
292
n
151
PHE
292
A
ASN
293
n
152
ASN
293
A
ALA
294
n
153
ALA
294
A
GLU
295
n
154
GLU
295
A
THR
296
n
155
THR
296
A
GLY
297
n
156
GLY
297
A
THR
298
n
157
THR
298
A
TRP
299
n
158
TRP
299
A
GLU
300
n
159
GLU
300
A
CYS
301
n
160
CYS
301
A
GLY
302
n
161
GLY
302
A
ARG
303
n
162
ARG
303
A
LEU
304
n
163
LEU
304
A
SER
305
n
164
SER
305
A
TYR
306
n
165
TYR
306
A
CYS
307
n
166
CYS
307
A
LEU
308
n
167
LEU
308
A
GLU
309
n
168
GLU
309
A
n
169
310
A
n
170
311
A
n
171
312
A
n
172
313
A
n
173
314
A
n
174
315
A
GLN
316
n
175
GLN
316
A
GLN
317
n
176
GLN
317
A
LEU
318
n
177
LEU
318
A
LEU
319
n
178
LEU
319
A
LEU
320
n
179
LEU
320
A
GLU
321
n
180
GLU
321
A
PRO
322
n
181
PRO
322
A
MET
323
n
182
MET
323
A
LEU
324
n
183
LEU
324
A
LYS
325
n
184
LYS
325
A
PHE
326
n
185
PHE
326
A
HIS
327
n
186
HIS
327
A
TYR
328
n
187
TYR
328
A
MET
329
n
188
MET
329
A
LEU
330
n
189
LEU
330
A
LYS
331
n
190
LYS
331
A
LYS
332
n
191
LYS
332
A
LEU
333
n
192
LEU
333
A
GLN
334
n
193
GLN
334
A
LEU
335
n
194
LEU
335
A
HIS
336
n
195
HIS
336
A
GLU
337
n
196
GLU
337
A
GLU
338
n
197
GLU
338
A
GLU
339
n
198
GLU
339
A
TYR
340
n
199
TYR
340
A
VAL
341
n
200
VAL
341
A
LEU
342
n
201
LEU
342
A
MET
343
n
202
MET
343
A
GLN
344
n
203
GLN
344
A
ALA
345
n
204
ALA
345
A
ILE
346
n
205
ILE
346
A
SER
347
n
206
SER
347
A
LEU
348
n
207
LEU
348
A
PHE
349
n
208
PHE
349
A
SER
350
n
209
SER
350
A
PRO
351
n
210
PRO
351
A
ASP
352
n
211
ASP
352
A
ARG
353
n
212
ARG
353
A
PRO
354
n
213
PRO
354
A
GLY
355
n
214
GLY
355
A
VAL
356
n
215
VAL
356
A
LEU
357
n
216
LEU
357
A
GLN
358
n
217
GLN
358
A
HIS
359
n
218
HIS
359
A
ARG
360
n
219
ARG
360
A
VAL
361
n
220
VAL
361
A
VAL
362
n
221
VAL
362
A
ASP
363
n
222
ASP
363
A
GLN
364
n
223
GLN
364
A
LEU
365
n
224
LEU
365
A
GLN
366
n
225
GLN
366
A
GLU
367
n
226
GLU
367
A
GLN
368
n
227
GLN
368
A
PHE
369
n
228
PHE
369
A
ALA
370
n
229
ALA
370
A
ILE
371
n
230
ILE
371
A
THR
372
n
231
THR
372
A
LEU
373
n
232
LEU
373
A
LYS
374
n
233
LYS
374
A
SER
375
n
234
SER
375
A
TYR
376
n
235
TYR
376
A
ILE
377
n
236
ILE
377
A
GLU
378
n
237
GLU
378
A
CYS
379
n
238
CYS
379
A
ASN
380
n
239
ASN
380
A
ARG
381
n
240
ARG
381
A
PRO
382
n
241
PRO
382
A
GLN
383
n
242
GLN
383
A
PRO
384
n
243
PRO
384
A
ALA
385
n
244
ALA
385
A
HIS
386
n
245
HIS
386
A
ARG
387
n
246
ARG
387
A
PHE
388
n
247
PHE
388
A
LEU
389
n
248
LEU
389
A
PHE
390
n
249
PHE
390
A
LEU
391
n
250
LEU
391
A
LYS
392
n
251
LYS
392
A
ILE
393
n
252
ILE
393
A
MET
394
n
253
MET
394
A
ALA
395
n
254
ALA
395
A
MET
396
n
255
MET
396
A
LEU
397
n
256
LEU
397
A
THR
398
n
257
THR
398
A
GLU
399
n
258
GLU
399
A
LEU
400
n
259
LEU
400
A
ARG
401
n
260
ARG
401
A
SER
402
n
261
SER
402
A
ILE
403
n
262
ILE
403
A
ASN
404
n
263
ASN
404
A
ALA
405
n
264
ALA
405
A
GLN
406
n
265
GLN
406
A
HIS
407
n
266
HIS
407
A
THR
408
n
267
THR
408
A
GLN
409
n
268
GLN
409
A
ARG
410
n
269
ARG
410
A
LEU
411
n
270
LEU
411
A
LEU
412
n
271
LEU
412
A
ARG
413
n
272
ARG
413
A
ILE
414
n
273
ILE
414
A
GLN
415
n
274
GLN
415
A
ASP
416
n
275
ASP
416
A
ILE
417
n
276
ILE
417
A
HIS
418
n
277
HIS
418
A
PRO
419
n
278
PRO
419
A
PHE
420
n
279
PHE
420
A
ALA
421
n
280
ALA
421
A
THR
422
n
281
THR
422
A
PRO
423
n
282
PRO
423
A
LEU
424
n
283
LEU
424
A
MET
425
n
284
MET
425
A
GLN
426
n
285
GLN
426
A
GLU
427
n
286
GLU
427
A
LEU
428
n
287
LEU
428
A
PHE
429
n
288
PHE
429
A
GLY
430
n
289
GLY
430
A
ILE
431
n
290
ILE
431
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
1810
-8
26290
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
-y,-x,-z+1/2
crystal symmetry operation
0.0000000000
0.0000000000
42.8255000000
A
O
TYR
225
A
O
TYR
84
A
N
LEU
213
A
N
LEU
72
A
N
SER
212
A
N
SER
71
A
O
CYS
307
A
O
CYS
166
A
O
TYR
306
A
O
TYR
165
A
N
TRP
299
A
N
TRP
158
A
O
THR
298
A
O
THR
157
A
N
ASN
293
A
N
ASN
152
1
A
VAL
177
A
VAL
36
1
Y
1
A
LEU
178
A
LEU
37
1
Y
1
A
SER
179
A
SER
38
1
Y
1
A
SER
180
A
SER
39
1
Y
1
A
GLY
181
A
GLY
40
1
Y
1
A
CYS
182
A
CYS
41
1
Y
1
A
GLU
183
A
GLU
42
1
Y
1
A
LEU
184
A
LEU
43
1
Y
1
A
PRO
185
A
PRO
44
1
Y
1
A
GLU
186
A
GLU
45
1
Y
1
A
SER
187
A
SER
46
1
Y
1
A
LEU
188
A
LEU
47
1
Y
1
A
GLN
189
A
GLN
48
1
Y
1
A
ALA
190
A
ALA
49
1
Y
1
A
PRO
191
A
PRO
50
1
Y
1
A
SER
192
A
SER
51
1
Y
1
A
ARG
193
A
ARG
52
1
Y
1
A
GLU
194
A
GLU
53
1
Y
1
A
GLU
195
A
GLU
54
1
Y
1
A
ALA
196
A
ALA
55
1
Y
1
A
ALA
197
A
ALA
56
1
Y
1
A
LYS
198
A
LYS
57
1
Y
1
A
TRP
199
A
TRP
58
1
Y
1
A
SER
200
A
SER
59
1
Y
1
A
ASP
310
A
ASP
169
1
Y
1
A
THR
311
A
THR
170
1
Y
1
A
ALA
312
A
ALA
171
1
Y
1
A
GLY
313
A
GLY
172
1
Y
1
A
GLY
314
A
GLY
173
1
Y
1
A
PHE
315
A
PHE
174
1
Y
1
A
A
OD2
O
ASP
HOH
163
612
2.13
1
A
ARG
203
-164.48
6.58
1
A
LYS
234
140.50
-25.30
1
A
CYS
301
-102.98
70.72
1
A
GLN
317
58.05
87.13
1
A
ASP
352
-101.23
64.93
1
A
PRO
354
-23.21
120.52
1
A
PRO
384
-57.05
-2.16
96.150
60.0612
36.810
0.0100
0.0000
0.0000
0.0100
0.0000
-0.0200
0.9260
0.8940
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2982
0.2283
0.2316
2.8000
45.8800
450
9443
4.8000
99.8000
1.000
1.000
15.4810
0.3220
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
1.8110
0.4180
0.8000
0.8000
1.4000
MAXIMUM LIKELIHOOD
MASK
2.8000
45.8800
15
2178
36
0
2127
0.3190
0.2590
2.8740
42
640
682
20
99.1300
2.800
50.000
4NY9
9474
0.000
0.115
1
17.000
6.600
99.800
refinement
Gerard Bricogne
buster-develop@GlobalPhasing.com
http://www.globalphasing.com/buster/
BUSTER-TNT
program
REFMAC 5.2.0019
data extraction
PDB
deposit@deposit.rcsb.org
April 22, 2011
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.11
data reduction
DENZO
data scaling
SCALEPACK
refinement
REFMAC
5.2.0019
Crystal Structure Of the Human PXR-LBD In Complex With N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-3-hydroxy-3-methylbutanamide
1
N
N
2
N
N
3
N
N
4
N
N
A
THR
144
A
THR
3
HELX_P
A
PHE
162
A
PHE
21
1
1
19
A
ARG
203
A
ARG
62
HELX_P
A
SER
208
A
SER
67
1
2
6
A
LYS
234
A
LYS
93
HELX_P
A
SER
238
A
SER
97
5
3
5
A
LEU
239
A
LEU
98
HELX_P
A
VAL
260
A
VAL
119
1
4
22
A
ILE
261
A
ILE
120
HELX_P
A
ASP
266
A
ASP
125
1
5
6
A
PRO
268
A
PRO
127
HELX_P
A
VAL
291
A
VAL
150
1
6
24
A
GLU
321
A
GLU
180
HELX_P
A
LEU
333
A
LEU
192
1
7
13
A
HIS
336
A
HIS
195
HELX_P
A
PHE
349
A
PHE
208
1
8
14
A
GLN
358
A
GLN
217
HELX_P
A
ARG
381
A
ARG
240
1
9
24
A
PHE
388
A
PHE
247
HELX_P
A
HIS
418
A
HIS
277
1
10
31
A
THR
422
A
THR
281
HELX_P
A
GLY
430
A
GLY
289
1
11
9
TRANSCRIPTION/TRANSCRIPTION inhibitor
pregnane X receptor, PXR, ligand binding domain, steroid receptor coactivator-1; CCR1, Chemokine Receptor-1; NR, nuclear receptor; AF, activation function; MDR1, multi-drug resistance gene-1, TRANSCRIPTION-TRANSCRIPTION inhibitor complex
NR1I2_HUMAN
UNP
1
142
O75469
GLTEEQRMMIRELMDAQMKTFDTTFSHFKNFRLPGVLSSGCELPESLQAPSREEAAKWSQVRKDLCSLKVSLQLRGEDGS
VWNYKPPADSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAETGTWEC
GRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECNR
PQPAHRFLFLKIMAMLTELRSINAQHTQRLLRIQDIHPFATPLMQELFGI
142
431
4NY9
142
431
O75469
A
1
1
290
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
222
A
VAL
81
A
TYR
225
A
TYR
84
A
VAL
211
A
VAL
70
A
ARG
216
A
ARG
75
A
LEU
304
A
LEU
163
A
LEU
308
A
LEU
167
A
THR
298
A
THR
157
A
CYS
301
A
CYS
160
A
PHE
292
A
PHE
151
A
ASN
293
A
ASN
152
BINDING SITE FOR RESIDUE 2Q4 A 501
A
2Q4
501
Software
9
BINDING SITE FOR RESIDUE GOL A 502
A
GOL
502
Software
7
A
VAL
211
A
VAL
70
9
1_555
A
MET
243
A
MET
102
9
1_555
A
ALA
244
A
ALA
103
9
1_555
A
GLN
285
A
GLN
144
9
1_555
A
PHE
288
A
PHE
147
9
1_555
A
TRP
299
A
TRP
158
9
1_555
A
TYR
306
A
TYR
165
9
1_555
A
HIS
407
A
HIS
266
9
1_555
A
HOH
605
D
HOH
9
1_555
A
THR
161
A
THR
20
7
1_555
A
PHE
162
A
PHE
21
7
1_555
A
ASP
163
A
ASP
22
7
1_555
A
TYR
249
A
TYR
108
7
1_555
A
MET
250
A
MET
109
7
1_555
A
GLY
253
A
GLY
112
7
1_555
A
ARG
287
A
ARG
146
7
1_555
96
P 43 21 2