0.006587
0.000000
0.000000
0.000000
0.006587
0.000000
0.000000
0.000000
0.018913
0.00000
0.00000
0.00000
Jiang, Y.
Trescott, L.
Holcomb, J.
Brunzelle, J.
Sirinupong, N.
Shi, X.
Yang, Z.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
151.810
151.810
52.873
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Ni 2
58.693
NICKEL (II) ION
non-polymer
C16 H34 O9
370.436
3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C14 H20 N6 O5 S
384.411
n
S-ADENOSYL-L-HOMOCYSTEINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
NI
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
C
N
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
N
N
351
S
C
N
352
N
C
N
353
N
C
N
354
N
S
N
355
N
C
N
356
N
O
N
357
N
O
N
358
N
C
N
359
S
C
N
360
N
O
N
361
S
C
N
362
N
O
N
363
R
C
N
364
N
O
N
365
R
C
Y
366
N
N
Y
367
N
C
Y
368
N
N
Y
369
N
C
Y
370
N
C
N
371
N
N
Y
372
N
N
Y
373
N
C
Y
374
N
N
Y
375
N
C
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
R
C
N
415
N
O
N
416
N
C
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
N
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
N
N
455
S
C
N
456
N
C
N
457
N
O
N
458
N
C
Y
459
N
C
Y
460
N
C
Y
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
N
465
N
O
N
466
N
O
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
N
N
479
S
C
N
480
N
C
N
481
N
O
N
482
N
C
N
483
N
C
N
484
N
C
N
485
N
O
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
Y
306
N
doub
Y
307
N
sing
Y
308
N
sing
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
doub
N
313
N
sing
Y
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
doub
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
sing
Y
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
sing
Y
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
N
378
N
sing
Y
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
doub
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
Y
423
N
doub
Y
424
N
sing
Y
425
N
sing
N
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
Y
451
N
doub
Y
452
N
sing
Y
453
N
sing
N
454
N
sing
Y
455
N
doub
N
456
N
sing
Y
457
N
doub
N
458
N
sing
Y
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
doub
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
426
3413
3425
10.1016/j.jmb.2014.02.019
24594358
Structural Insights into Estrogen Receptor alpha Methylation by Histone Methyltransferase SMYD2, a Cellular Event Implicated in Estrogen Signaling Regulation.
2014
10.2210/pdb4o6f/pdb
pdb_00004o6f
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2013-07-22
MARMOSAIC 300 mm CCD
Kohzu
SINGLE WAVELENGTH
M
x-ray
1
1.0781
1.0
21-ID-G
APS
1.0781
SYNCHROTRON
APS BEAMLINE 21-ID-G
49832.164
N-lysine methyltransferase SMYD2
2.1.1.-, 2.1.1.43
G165E
1
man
polymer
1372.689
Estrogen receptor
UNP residues 261-271
1
syn
polymer
65.409
ZINC ION
3
syn
non-polymer
384.411
S-ADENOSYL-L-HOMOCYSTEINE
1
syn
non-polymer
370.436
3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL
1
syn
non-polymer
58.693
NICKEL (II) ION
2
syn
non-polymer
18.015
water
94
nat
water
HSKM-B, Histone methyltransferase SMYD2, Lysine N-methyltransferase 3C, SET and MYND domain-containing protein 2
ER, ER-alpha, Estradiol receptor, Nuclear receptor subfamily 3 group A member 1
no
no
MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQK
EDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFY
SKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSY
IDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEI
CELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAA
GEKALKKAIAIMEVAHGKDHPYISEIKQEIESH
MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQK
EDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFY
SKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSY
IDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEI
CELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAA
GEKALKKAIAIMEVAHGKDHPYISEIKQEIESH
A
polypeptide(L)
no
no
GGRMLKHKRQR
GGRMLKHKRQR
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
KMT3C, SMYD2
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
Plasmid
pSUMO
1
2.97
58.65
VAPOR DIFFUSION, HANGING DROP
7.5
20% polyethylene glycol 3350, 100 mM Tris pH 7.5, 5% ethanol, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2014-03-26
1
1
2014-10-08
1
2
2023-09-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2013-12-20
REL
REL
ZN
ZINC ION
SAH
S-ADENOSYL-L-HOMOCYSTEINE
PE8
3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL
NI
NICKEL (II) ION
HOH
water
This sequence occurs naturally in humans.
9606
human
Homo sapiens
sample
3QWW
PDB ENTRY 3QWW
PDB
experimental model
ZN
435
3
ZN
ZN
501
A
ZN
436
3
ZN
ZN
502
A
ZN
437
3
ZN
ZN
503
A
SAH
434
4
SAH
SAH
504
A
PE8
1
5
PE8
PE8
505
A
NI
1
6
NI
NI
506
A
NI
2
6
NI
NI
507
A
HOH
1
7
HOH
HOH
601
A
HOH
2
7
HOH
HOH
602
A
HOH
3
7
HOH
HOH
603
A
HOH
4
7
HOH
HOH
604
A
HOH
5
7
HOH
HOH
605
A
HOH
6
7
HOH
HOH
606
A
HOH
7
7
HOH
HOH
607
A
HOH
8
7
HOH
HOH
608
A
HOH
9
7
HOH
HOH
609
A
HOH
10
7
HOH
HOH
610
A
HOH
11
7
HOH
HOH
611
A
HOH
12
7
HOH
HOH
612
A
HOH
13
7
HOH
HOH
613
A
HOH
14
7
HOH
HOH
614
A
HOH
15
7
HOH
HOH
615
A
HOH
16
7
HOH
HOH
616
A
HOH
17
7
HOH
HOH
617
A
HOH
18
7
HOH
HOH
618
A
HOH
19
7
HOH
HOH
619
A
HOH
20
7
HOH
HOH
620
A
HOH
21
7
HOH
HOH
621
A
HOH
22
7
HOH
HOH
622
A
HOH
23
7
HOH
HOH
623
A
HOH
24
7
HOH
HOH
624
A
HOH
25
7
HOH
HOH
625
A
HOH
26
7
HOH
HOH
626
A
HOH
27
7
HOH
HOH
627
A
HOH
28
7
HOH
HOH
628
A
HOH
29
7
HOH
HOH
629
A
HOH
30
7
HOH
HOH
630
A
HOH
31
7
HOH
HOH
631
A
HOH
32
7
HOH
HOH
632
A
HOH
33
7
HOH
HOH
633
A
HOH
34
7
HOH
HOH
634
A
HOH
35
7
HOH
HOH
635
A
HOH
36
7
HOH
HOH
636
A
HOH
37
7
HOH
HOH
637
A
HOH
38
7
HOH
HOH
638
A
HOH
39
7
HOH
HOH
639
A
HOH
40
7
HOH
HOH
640
A
HOH
41
7
HOH
HOH
641
A
HOH
42
7
HOH
HOH
642
A
HOH
43
7
HOH
HOH
643
A
HOH
44
7
HOH
HOH
644
A
HOH
45
7
HOH
HOH
645
A
HOH
46
7
HOH
HOH
646
A
HOH
47
7
HOH
HOH
647
A
HOH
48
7
HOH
HOH
648
A
HOH
49
7
HOH
HOH
649
A
HOH
50
7
HOH
HOH
650
A
HOH
51
7
HOH
HOH
651
A
HOH
52
7
HOH
HOH
652
A
HOH
53
7
HOH
HOH
653
A
HOH
54
7
HOH
HOH
654
A
HOH
55
7
HOH
HOH
655
A
HOH
56
7
HOH
HOH
656
A
HOH
57
7
HOH
HOH
657
A
HOH
59
7
HOH
HOH
658
A
HOH
60
7
HOH
HOH
659
A
HOH
61
7
HOH
HOH
660
A
HOH
62
7
HOH
HOH
661
A
HOH
63
7
HOH
HOH
662
A
HOH
64
7
HOH
HOH
663
A
HOH
65
7
HOH
HOH
664
A
HOH
66
7
HOH
HOH
665
A
HOH
67
7
HOH
HOH
666
A
HOH
68
7
HOH
HOH
667
A
HOH
69
7
HOH
HOH
668
A
HOH
70
7
HOH
HOH
669
A
HOH
71
7
HOH
HOH
670
A
HOH
72
7
HOH
HOH
671
A
HOH
73
7
HOH
HOH
672
A
HOH
74
7
HOH
HOH
673
A
HOH
75
7
HOH
HOH
674
A
HOH
76
7
HOH
HOH
675
A
HOH
77
7
HOH
HOH
676
A
HOH
78
7
HOH
HOH
677
A
HOH
79
7
HOH
HOH
678
A
HOH
81
7
HOH
HOH
679
A
HOH
83
7
HOH
HOH
680
A
HOH
84
7
HOH
HOH
681
A
HOH
86
7
HOH
HOH
682
A
HOH
87
7
HOH
HOH
683
A
HOH
88
7
HOH
HOH
684
A
HOH
89
7
HOH
HOH
685
A
HOH
90
7
HOH
HOH
686
A
HOH
91
7
HOH
HOH
687
A
HOH
93
7
HOH
HOH
688
A
HOH
95
7
HOH
HOH
689
A
HOH
96
7
HOH
HOH
690
A
HOH
97
7
HOH
HOH
691
A
HOH
99
7
HOH
HOH
692
A
HOH
58
7
HOH
HOH
301
B
HOH
82
7
HOH
HOH
302
B
n
1
1
A
n
2
2
A
ALA
3
n
3
ALA
3
A
GLU
4
n
4
GLU
4
A
GLY
5
n
5
GLY
5
A
LEU
6
n
6
LEU
6
A
GLY
7
n
7
GLY
7
A
GLY
8
n
8
GLY
8
A
LEU
9
n
9
LEU
9
A
GLU
10
n
10
GLU
10
A
ARG
11
n
11
ARG
11
A
PHE
12
n
12
PHE
12
A
CYS
13
n
13
CYS
13
A
SER
14
n
14
SER
14
A
PRO
15
n
15
PRO
15
A
GLY
16
n
16
GLY
16
A
LYS
17
n
17
LYS
17
A
GLY
18
n
18
GLY
18
A
ARG
19
n
19
ARG
19
A
GLY
20
n
20
GLY
20
A
LEU
21
n
21
LEU
21
A
ARG
22
n
22
ARG
22
A
ALA
23
n
23
ALA
23
A
LEU
24
n
24
LEU
24
A
GLN
25
n
25
GLN
25
A
PRO
26
n
26
PRO
26
A
PHE
27
n
27
PHE
27
A
GLN
28
n
28
GLN
28
A
VAL
29
n
29
VAL
29
A
GLY
30
n
30
GLY
30
A
ASP
31
n
31
ASP
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
PHE
34
n
34
PHE
34
A
SER
35
n
35
SER
35
A
CYS
36
n
36
CYS
36
A
PRO
37
n
37
PRO
37
A
ALA
38
n
38
ALA
38
A
TYR
39
n
39
TYR
39
A
ALA
40
n
40
ALA
40
A
TYR
41
n
41
TYR
41
A
VAL
42
n
42
VAL
42
A
LEU
43
n
43
LEU
43
A
THR
44
n
44
THR
44
A
VAL
45
n
45
VAL
45
A
ASN
46
n
46
ASN
46
A
GLU
47
n
47
GLU
47
A
ARG
48
n
48
ARG
48
A
GLY
49
n
49
GLY
49
A
ASN
50
n
50
ASN
50
A
HIS
51
n
51
HIS
51
A
CYS
52
n
52
CYS
52
A
GLU
53
n
53
GLU
53
A
TYR
54
n
54
TYR
54
A
CYS
55
n
55
CYS
55
A
PHE
56
n
56
PHE
56
A
THR
57
n
57
THR
57
A
ARG
58
n
58
ARG
58
A
LYS
59
n
59
LYS
59
A
GLU
60
n
60
GLU
60
A
GLY
61
n
61
GLY
61
A
LEU
62
n
62
LEU
62
A
SER
63
n
63
SER
63
A
LYS
64
n
64
LYS
64
A
CYS
65
n
65
CYS
65
A
GLY
66
n
66
GLY
66
A
ARG
67
n
67
ARG
67
A
CYS
68
n
68
CYS
68
A
LYS
69
n
69
LYS
69
A
GLN
70
n
70
GLN
70
A
ALA
71
n
71
ALA
71
A
PHE
72
n
72
PHE
72
A
TYR
73
n
73
TYR
73
A
CYS
74
n
74
CYS
74
A
ASN
75
n
75
ASN
75
A
VAL
76
n
76
VAL
76
A
GLU
77
n
77
GLU
77
A
CYS
78
n
78
CYS
78
A
GLN
79
n
79
GLN
79
A
LYS
80
n
80
LYS
80
A
GLU
81
n
81
GLU
81
A
ASP
82
n
82
ASP
82
A
TRP
83
n
83
TRP
83
A
PRO
84
n
84
PRO
84
A
MET
85
n
85
MET
85
A
HIS
86
n
86
HIS
86
A
LYS
87
n
87
LYS
87
A
LEU
88
n
88
LEU
88
A
GLU
89
n
89
GLU
89
A
CYS
90
n
90
CYS
90
A
SER
91
n
91
SER
91
A
PRO
92
n
92
PRO
92
A
MET
93
n
93
MET
93
A
VAL
94
n
94
VAL
94
A
VAL
95
n
95
VAL
95
A
PHE
96
n
96
PHE
96
A
GLY
97
n
97
GLY
97
A
GLU
98
n
98
GLU
98
A
ASN
99
n
99
ASN
99
A
TRP
100
n
100
TRP
100
A
ASN
101
n
101
ASN
101
A
PRO
102
n
102
PRO
102
A
SER
103
n
103
SER
103
A
GLU
104
n
104
GLU
104
A
THR
105
n
105
THR
105
A
VAL
106
n
106
VAL
106
A
ARG
107
n
107
ARG
107
A
LEU
108
n
108
LEU
108
A
THR
109
n
109
THR
109
A
ALA
110
n
110
ALA
110
A
ARG
111
n
111
ARG
111
A
ILE
112
n
112
ILE
112
A
LEU
113
n
113
LEU
113
A
ALA
114
n
114
ALA
114
A
LYS
115
n
115
LYS
115
A
GLN
116
n
116
GLN
116
A
LYS
117
n
117
LYS
117
A
ILE
118
n
118
ILE
118
A
HIS
119
n
119
HIS
119
A
PRO
120
n
120
PRO
120
A
GLU
121
n
121
GLU
121
A
ARG
122
n
122
ARG
122
A
THR
123
n
123
THR
123
A
PRO
124
n
124
PRO
124
A
SER
125
n
125
SER
125
A
GLU
126
n
126
GLU
126
A
LYS
127
n
127
LYS
127
A
LEU
128
n
128
LEU
128
A
LEU
129
n
129
LEU
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
LYS
132
n
132
LYS
132
A
GLU
133
n
133
GLU
133
A
PHE
134
n
134
PHE
134
A
GLU
135
n
135
GLU
135
A
SER
136
n
136
SER
136
A
HIS
137
n
137
HIS
137
A
LEU
138
n
138
LEU
138
A
ASP
139
n
139
ASP
139
A
LYS
140
n
140
LYS
140
A
LEU
141
n
141
LEU
141
A
ASP
142
n
142
ASP
142
A
ASN
143
n
143
ASN
143
A
GLU
144
n
144
GLU
144
A
LYS
145
n
145
LYS
145
A
LYS
146
n
146
LYS
146
A
ASP
147
n
147
ASP
147
A
LEU
148
n
148
LEU
148
A
ILE
149
n
149
ILE
149
A
GLN
150
n
150
GLN
150
A
SER
151
n
151
SER
151
A
ASP
152
n
152
ASP
152
A
ILE
153
n
153
ILE
153
A
ALA
154
n
154
ALA
154
A
ALA
155
n
155
ALA
155
A
LEU
156
n
156
LEU
156
A
HIS
157
n
157
HIS
157
A
HIS
158
n
158
HIS
158
A
PHE
159
n
159
PHE
159
A
TYR
160
n
160
TYR
160
A
SER
161
n
161
SER
161
A
LYS
162
n
162
LYS
162
A
HIS
163
n
163
HIS
163
A
LEU
164
n
164
LEU
164
A
GLU
165
n
165
GLU
165
A
PHE
166
n
166
PHE
166
A
PRO
167
n
167
PRO
167
A
ASP
168
n
168
ASP
168
A
ASN
169
n
169
ASN
169
A
ASP
170
n
170
ASP
170
A
SER
171
n
171
SER
171
A
LEU
172
n
172
LEU
172
A
VAL
173
n
173
VAL
173
A
VAL
174
n
174
VAL
174
A
LEU
175
n
175
LEU
175
A
PHE
176
n
176
PHE
176
A
ALA
177
n
177
ALA
177
A
GLN
178
n
178
GLN
178
A
VAL
179
n
179
VAL
179
A
ASN
180
n
180
ASN
180
A
CYS
181
n
181
CYS
181
A
ASN
182
n
182
ASN
182
A
GLY
183
n
183
GLY
183
A
PHE
184
n
184
PHE
184
A
THR
185
n
185
THR
185
A
ILE
186
n
186
ILE
186
A
GLU
187
n
187
GLU
187
A
ASP
188
n
188
ASP
188
A
GLU
189
n
189
GLU
189
A
GLU
190
n
190
GLU
190
A
LEU
191
n
191
LEU
191
A
SER
192
n
192
SER
192
A
HIS
193
n
193
HIS
193
A
LEU
194
n
194
LEU
194
A
GLY
195
n
195
GLY
195
A
SER
196
n
196
SER
196
A
ALA
197
n
197
ALA
197
A
ILE
198
n
198
ILE
198
A
PHE
199
n
199
PHE
199
A
PRO
200
n
200
PRO
200
A
ASP
201
n
201
ASP
201
A
VAL
202
n
202
VAL
202
A
ALA
203
n
203
ALA
203
A
LEU
204
n
204
LEU
204
A
MET
205
n
205
MET
205
A
ASN
206
n
206
ASN
206
A
HIS
207
n
207
HIS
207
A
SER
208
n
208
SER
208
A
CYS
209
n
209
CYS
209
A
CYS
210
n
210
CYS
210
A
PRO
211
n
211
PRO
211
A
ASN
212
n
212
ASN
212
A
VAL
213
n
213
VAL
213
A
ILE
214
n
214
ILE
214
A
VAL
215
n
215
VAL
215
A
THR
216
n
216
THR
216
A
TYR
217
n
217
TYR
217
A
LYS
218
n
218
LYS
218
A
GLY
219
n
219
GLY
219
A
THR
220
n
220
THR
220
A
LEU
221
n
221
LEU
221
A
ALA
222
n
222
ALA
222
A
GLU
223
n
223
GLU
223
A
VAL
224
n
224
VAL
224
A
ARG
225
n
225
ARG
225
A
ALA
226
n
226
ALA
226
A
VAL
227
n
227
VAL
227
A
GLN
228
n
228
GLN
228
A
GLU
229
n
229
GLU
229
A
ILE
230
n
230
ILE
230
A
LYS
231
n
231
LYS
231
A
PRO
232
n
232
PRO
232
A
GLY
233
n
233
GLY
233
A
GLU
234
n
234
GLU
234
A
GLU
235
n
235
GLU
235
A
VAL
236
n
236
VAL
236
A
PHE
237
n
237
PHE
237
A
THR
238
n
238
THR
238
A
SER
239
n
239
SER
239
A
TYR
240
n
240
TYR
240
A
ILE
241
n
241
ILE
241
A
ASP
242
n
242
ASP
242
A
LEU
243
n
243
LEU
243
A
LEU
244
n
244
LEU
244
A
TYR
245
n
245
TYR
245
A
PRO
246
n
246
PRO
246
A
THR
247
n
247
THR
247
A
GLU
248
n
248
GLU
248
A
ASP
249
n
249
ASP
249
A
ARG
250
n
250
ARG
250
A
ASN
251
n
251
ASN
251
A
ASP
252
n
252
ASP
252
A
ARG
253
n
253
ARG
253
A
LEU
254
n
254
LEU
254
A
ARG
255
n
255
ARG
255
A
ASP
256
n
256
ASP
256
A
SER
257
n
257
SER
257
A
TYR
258
n
258
TYR
258
A
PHE
259
n
259
PHE
259
A
PHE
260
n
260
PHE
260
A
THR
261
n
261
THR
261
A
CYS
262
n
262
CYS
262
A
GLU
263
n
263
GLU
263
A
CYS
264
n
264
CYS
264
A
GLN
265
n
265
GLN
265
A
GLU
266
n
266
GLU
266
A
CYS
267
n
267
CYS
267
A
THR
268
n
268
THR
268
A
THR
269
n
269
THR
269
A
LYS
270
n
270
LYS
270
A
ASP
271
n
271
ASP
271
A
LYS
272
n
272
LYS
272
A
ASP
273
n
273
ASP
273
A
LYS
274
n
274
LYS
274
A
ALA
275
n
275
ALA
275
A
LYS
276
n
276
LYS
276
A
VAL
277
n
277
VAL
277
A
GLU
278
n
278
GLU
278
A
ILE
279
n
279
ILE
279
A
ARG
280
n
280
ARG
280
A
LYS
281
n
281
LYS
281
A
LEU
282
n
282
LEU
282
A
SER
283
n
283
SER
283
A
ASP
284
n
284
ASP
284
A
PRO
285
n
285
PRO
285
A
PRO
286
n
286
PRO
286
A
LYS
287
n
287
LYS
287
A
ALA
288
n
288
ALA
288
A
GLU
289
n
289
GLU
289
A
ALA
290
n
290
ALA
290
A
ILE
291
n
291
ILE
291
A
ARG
292
n
292
ARG
292
A
ASP
293
n
293
ASP
293
A
MET
294
n
294
MET
294
A
VAL
295
n
295
VAL
295
A
ARG
296
n
296
ARG
296
A
TYR
297
n
297
TYR
297
A
ALA
298
n
298
ALA
298
A
ARG
299
n
299
ARG
299
A
ASN
300
n
300
ASN
300
A
VAL
301
n
301
VAL
301
A
ILE
302
n
302
ILE
302
A
GLU
303
n
303
GLU
303
A
GLU
304
n
304
GLU
304
A
PHE
305
n
305
PHE
305
A
ARG
306
n
306
ARG
306
A
ARG
307
n
307
ARG
307
A
ALA
308
n
308
ALA
308
A
LYS
309
n
309
LYS
309
A
HIS
310
n
310
HIS
310
A
TYR
311
n
311
TYR
311
A
LYS
312
n
312
LYS
312
A
SER
313
n
313
SER
313
A
PRO
314
n
314
PRO
314
A
SER
315
n
315
SER
315
A
GLU
316
n
316
GLU
316
A
LEU
317
n
317
LEU
317
A
LEU
318
n
318
LEU
318
A
GLU
319
n
319
GLU
319
A
ILE
320
n
320
ILE
320
A
CYS
321
n
321
CYS
321
A
GLU
322
n
322
GLU
322
A
LEU
323
n
323
LEU
323
A
SER
324
n
324
SER
324
A
GLN
325
n
325
GLN
325
A
GLU
326
n
326
GLU
326
A
LYS
327
n
327
LYS
327
A
MET
328
n
328
MET
328
A
SER
329
n
329
SER
329
A
SER
330
n
330
SER
330
A
VAL
331
n
331
VAL
331
A
PHE
332
n
332
PHE
332
A
GLU
333
n
333
GLU
333
A
ASP
334
n
334
ASP
334
A
SER
335
n
335
SER
335
A
ASN
336
n
336
ASN
336
A
VAL
337
n
337
VAL
337
A
TYR
338
n
338
TYR
338
A
MET
339
n
339
MET
339
A
LEU
340
n
340
LEU
340
A
HIS
341
n
341
HIS
341
A
MET
342
n
342
MET
342
A
MET
343
n
343
MET
343
A
TYR
344
n
344
TYR
344
A
GLN
345
n
345
GLN
345
A
ALA
346
n
346
ALA
346
A
MET
347
n
347
MET
347
A
GLY
348
n
348
GLY
348
A
VAL
349
n
349
VAL
349
A
CYS
350
n
350
CYS
350
A
LEU
351
n
351
LEU
351
A
TYR
352
n
352
TYR
352
A
MET
353
n
353
MET
353
A
GLN
354
n
354
GLN
354
A
ASP
355
n
355
ASP
355
A
TRP
356
n
356
TRP
356
A
GLU
357
n
357
GLU
357
A
GLY
358
n
358
GLY
358
A
ALA
359
n
359
ALA
359
A
LEU
360
n
360
LEU
360
A
GLN
361
n
361
GLN
361
A
TYR
362
n
362
TYR
362
A
GLY
363
n
363
GLY
363
A
GLN
364
n
364
GLN
364
A
LYS
365
n
365
LYS
365
A
ILE
366
n
366
ILE
366
A
ILE
367
n
367
ILE
367
A
LYS
368
n
368
LYS
368
A
PRO
369
n
369
PRO
369
A
TYR
370
n
370
TYR
370
A
SER
371
n
371
SER
371
A
LYS
372
n
372
LYS
372
A
HIS
373
n
373
HIS
373
A
TYR
374
n
374
TYR
374
A
PRO
375
n
375
PRO
375
A
LEU
376
n
376
LEU
376
A
TYR
377
n
377
TYR
377
A
SER
378
n
378
SER
378
A
LEU
379
n
379
LEU
379
A
ASN
380
n
380
ASN
380
A
VAL
381
n
381
VAL
381
A
ALA
382
n
382
ALA
382
A
SER
383
n
383
SER
383
A
MET
384
n
384
MET
384
A
TRP
385
n
385
TRP
385
A
LEU
386
n
386
LEU
386
A
LYS
387
n
387
LYS
387
A
LEU
388
n
388
LEU
388
A
GLY
389
n
389
GLY
389
A
ARG
390
n
390
ARG
390
A
LEU
391
n
391
LEU
391
A
TYR
392
n
392
TYR
392
A
MET
393
n
393
MET
393
A
GLY
394
n
394
GLY
394
A
LEU
395
n
395
LEU
395
A
GLU
396
n
396
GLU
396
A
HIS
397
n
397
HIS
397
A
LYS
398
n
398
LYS
398
A
ALA
399
n
399
ALA
399
A
ALA
400
n
400
ALA
400
A
GLY
401
n
401
GLY
401
A
GLU
402
n
402
GLU
402
A
LYS
403
n
403
LYS
403
A
ALA
404
n
404
ALA
404
A
LEU
405
n
405
LEU
405
A
LYS
406
n
406
LYS
406
A
LYS
407
n
407
LYS
407
A
ALA
408
n
408
ALA
408
A
ILE
409
n
409
ILE
409
A
ALA
410
n
410
ALA
410
A
ILE
411
n
411
ILE
411
A
MET
412
n
412
MET
412
A
GLU
413
n
413
GLU
413
A
VAL
414
n
414
VAL
414
A
ALA
415
n
415
ALA
415
A
HIS
416
n
416
HIS
416
A
GLY
417
n
417
GLY
417
A
LYS
418
n
418
LYS
418
A
ASP
419
n
419
ASP
419
A
HIS
420
n
420
HIS
420
A
PRO
421
n
421
PRO
421
A
TYR
422
n
422
TYR
422
A
ILE
423
n
423
ILE
423
A
SER
424
n
424
SER
424
A
GLU
425
n
425
GLU
425
A
ILE
426
n
426
ILE
426
A
LYS
427
n
427
LYS
427
A
GLN
428
n
428
GLN
428
A
GLU
429
n
429
GLU
429
A
ILE
430
n
430
ILE
430
A
GLU
431
n
431
GLU
431
A
SER
432
n
432
SER
432
A
n
433
433
A
n
1
261
B
GLY
262
n
2
GLY
262
B
ARG
263
n
3
ARG
263
B
MET
264
n
4
MET
264
B
LEU
265
n
5
LEU
265
B
LYS
266
n
6
LYS
266
B
HIS
267
n
7
HIS
267
B
LYS
268
n
8
LYS
268
B
ARG
269
n
9
ARG
269
B
GLN
270
n
10
GLN
270
B
ARG
271
n
11
ARG
271
B
author_and_software_defined_assembly
PISA
2
dimeric
1970
2
20860
A
CYS
52
A
SG
CYS
52
1_555
A
ZN
501
C
ZN
ZN
1_555
A
CYS
55
A
SG
CYS
55
1_555
104.8
A
CYS
52
A
SG
CYS
52
1_555
A
ZN
501
C
ZN
ZN
1_555
A
CYS
74
A
SG
CYS
74
1_555
101.6
A
CYS
55
A
SG
CYS
55
1_555
A
ZN
501
C
ZN
ZN
1_555
A
CYS
74
A
SG
CYS
74
1_555
102.6
A
CYS
52
A
SG
CYS
52
1_555
A
ZN
501
C
ZN
ZN
1_555
A
CYS
78
A
SG
CYS
78
1_555
97.0
A
CYS
55
A
SG
CYS
55
1_555
A
ZN
501
C
ZN
ZN
1_555
A
CYS
78
A
SG
CYS
78
1_555
123.5
A
CYS
74
A
SG
CYS
74
1_555
A
ZN
501
C
ZN
ZN
1_555
A
CYS
78
A
SG
CYS
78
1_555
123.3
A
CYS
65
A
SG
CYS
65
1_555
A
ZN
502
D
ZN
ZN
1_555
A
CYS
68
A
SG
CYS
68
1_555
107.7
A
CYS
65
A
SG
CYS
65
1_555
A
ZN
502
D
ZN
ZN
1_555
A
HIS
86
A
NE2
HIS
86
1_555
112.4
A
CYS
68
A
SG
CYS
68
1_555
A
ZN
502
D
ZN
ZN
1_555
A
HIS
86
A
NE2
HIS
86
1_555
96.8
A
CYS
65
A
SG
CYS
65
1_555
A
ZN
502
D
ZN
ZN
1_555
A
CYS
90
A
SG
CYS
90
1_555
111.9
A
CYS
68
A
SG
CYS
68
1_555
A
ZN
502
D
ZN
ZN
1_555
A
CYS
90
A
SG
CYS
90
1_555
121.9
A
HIS
86
A
NE2
HIS
86
1_555
A
ZN
502
D
ZN
ZN
1_555
A
CYS
90
A
SG
CYS
90
1_555
105.1
A
CYS
209
A
SG
CYS
209
1_555
A
ZN
503
E
ZN
ZN
1_555
A
CYS
262
A
SG
CYS
262
1_555
112.3
A
CYS
209
A
SG
CYS
209
1_555
A
ZN
503
E
ZN
ZN
1_555
A
CYS
264
A
SG
CYS
264
1_555
110.0
A
CYS
262
A
SG
CYS
262
1_555
A
ZN
503
E
ZN
ZN
1_555
A
CYS
264
A
SG
CYS
264
1_555
103.0
A
CYS
209
A
SG
CYS
209
1_555
A
ZN
503
E
ZN
ZN
1_555
A
CYS
267
A
SG
CYS
267
1_555
101.6
A
CYS
262
A
SG
CYS
262
1_555
A
ZN
503
E
ZN
ZN
1_555
A
CYS
267
A
SG
CYS
267
1_555
116.8
A
CYS
264
A
SG
CYS
264
1_555
A
ZN
503
E
ZN
ZN
1_555
A
CYS
267
A
SG
CYS
267
1_555
113.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
12
A
N
PHE
12
A
O
GLY
20
A
O
GLY
20
A
N
CYS
36
A
N
CYS
36
A
O
ALA
222
A
O
ALA
222
A
O
GLU
223
A
O
GLU
223
A
N
THR
216
A
N
THR
216
A
N
VAL
42
A
N
VAL
42
A
O
SER
196
A
O
SER
196
A
O
LEU
194
A
O
LEU
194
A
N
ILE
186
A
N
ILE
186
A
N
SER
63
A
N
SER
63
A
O
TYR
73
A
O
TYR
73
A
N
ASN
206
A
N
ASN
206
A
O
THR
238
A
O
THR
238
1
A
MET
1
A
MET
1
1
Y
1
A
ARG
2
A
ARG
2
1
Y
1
A
HIS
433
A
HIS
433
1
Y
1
B
GLY
261
B
GLY
1
1
Y
0.2355
0.1749
0.1780
2.822
75.9
620
12038
5.15
81.46
0.38
1
1.37
MOLECULAR REPLACEMENT
23.65
0.90
1.11
PDB ENTRY 3QWW
ML
FLAT BULK SOLVENT MODEL
2.822
75.9
94
3697
56
0
3547
0.006
3681
1.486
4949
16.467
1425
0.096
523
0.006
634
0.3130
0.2382
3.1057
162
2952
85.00
0.2492
0.1956
3.5551
145
2930
84.00
0.2116
0.1495
4.4790
155
2837
82.00
0.2214
0.1623
75.9324
158
2699
76.00
48.34
2.82
75.9
4O6F
12051
0
0
0.11
0.11
1
10.8
3.8
83.6
0.446
2.82
3.15
2.5
0.446
1
3.6
86.4
data collection
HKL-2000
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.8.2_1309)
data reduction
HKL-2000
data scaling
HKL-2000
Structural Basis of Estrogen Receptor Alpha Methylation Mediated by Histone Methyltransferase SmyD2
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
7
N
N
7
N
N
A
VAL
45
A
VAL
45
HELX_P
A
ARG
48
A
ARG
48
5
1
4
A
ASN
75
A
ASN
75
HELX_P
A
LYS
87
A
LYS
87
1
2
13
A
GLU
89
A
GLU
89
HELX_P
A
PHE
96
A
PHE
96
1
3
8
A
SER
103
A
SER
103
HELX_P
A
HIS
119
A
HIS
119
1
4
17
A
THR
123
A
THR
123
HELX_P
A
LYS
127
A
LYS
127
5
5
5
A
ALA
130
A
ALA
130
HELX_P
A
PHE
134
A
PHE
134
5
6
5
A
HIS
137
A
HIS
137
HELX_P
A
LEU
141
A
LEU
141
5
7
5
A
ASP
142
A
ASP
142
HELX_P
A
SER
161
A
SER
161
1
8
20
A
ASP
168
A
ASP
168
HELX_P
A
GLY
183
A
GLY
183
1
9
16
A
PHE
199
A
PHE
199
HELX_P
A
LEU
204
A
LEU
204
1
10
6
A
PRO
246
A
PRO
246
HELX_P
A
PHE
259
A
PHE
259
1
11
14
A
CYS
264
A
CYS
264
HELX_P
A
LYS
270
A
LYS
270
1
12
7
A
LYS
272
A
LYS
272
HELX_P
A
VAL
277
A
VAL
277
1
13
6
A
LYS
287
A
LYS
287
HELX_P
A
LYS
309
A
LYS
309
1
14
23
A
SER
313
A
SER
313
HELX_P
A
SER
329
A
SER
329
1
15
17
A
ASN
336
A
ASN
336
HELX_P
A
MET
353
A
MET
353
1
16
18
A
ASP
355
A
ASP
355
HELX_P
A
TYR
374
A
TYR
374
1
17
20
A
SER
378
A
SER
378
HELX_P
A
LEU
395
A
LEU
395
1
18
18
A
HIS
397
A
HIS
397
HELX_P
A
GLY
417
A
GLY
417
1
19
21
A
HIS
420
A
HIS
420
HELX_P
A
GLU
431
A
GLU
431
1
20
12
metalc
2.615
A
CYS
52
A
SG
CYS
52
1_555
A
ZN
501
C
ZN
ZN
1_555
metalc
2.338
A
CYS
55
A
SG
CYS
55
1_555
A
ZN
501
C
ZN
ZN
1_555
metalc
2.478
A
CYS
65
A
SG
CYS
65
1_555
A
ZN
502
D
ZN
ZN
1_555
metalc
2.207
A
CYS
68
A
SG
CYS
68
1_555
A
ZN
502
D
ZN
ZN
1_555
metalc
2.439
A
CYS
74
A
SG
CYS
74
1_555
A
ZN
501
C
ZN
ZN
1_555
metalc
2.333
A
CYS
78
A
SG
CYS
78
1_555
A
ZN
501
C
ZN
ZN
1_555
metalc
1.982
A
HIS
86
A
NE2
HIS
86
1_555
A
ZN
502
D
ZN
ZN
1_555
metalc
2.415
A
CYS
90
A
SG
CYS
90
1_555
A
ZN
502
D
ZN
ZN
1_555
metalc
2.426
A
CYS
209
A
SG
CYS
209
1_555
A
ZN
503
E
ZN
ZN
1_555
metalc
2.514
A
A
CYS
210
A
SG
CYS
210
1_555
A
NI
507
I
NI
NI
1_555
metalc
2.272
A
CYS
262
A
SG
CYS
262
1_555
A
ZN
503
E
ZN
ZN
1_555
metalc
2.396
A
CYS
264
A
SG
CYS
264
1_555
A
ZN
503
E
ZN
ZN
1_555
metalc
2.295
A
CYS
267
A
SG
CYS
267
1_555
A
ZN
503
E
ZN
ZN
1_555
TRANSFERASE
Histone Methyltransferase, SmyD2, Estrogen Receptor ER Alpha, Methylation, Estrogen Signaling, TRANSFERASE
A
ASP
284
A
ASP
284
1
A
PRO
285
A
PRO
285
-18.28
SMYD2_HUMAN
UNP
1
1
Q9NRG4
MRAEGLGGLERFCSPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFYCNVECQK
EDWPMHKLECSPMVVFGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVKEFESHLDKLDNEKKDLIQSDIAALHHFY
SKHLGFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSY
IDLLYPTEDRNDRLRDSYFFTCECQECTTKDKDKAKVEIRKLSDPPKAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEI
CELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAA
GEKALKKAIAIMEVAHGKDHPYISEIKQEIESH
ESR1_HUMAN
UNP
2
261
P03372
GGRMLKHKRQR
1
433
4O6F
1
433
Q9NRG4
A
1
1
433
261
271
4O6F
261
271
P03372
B
2
1
11
1
GLY
engineered mutation
GLU
165
4O6F
A
Q9NRG4
UNP
165
165
2
3
3
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
LEU
9
A
LEU
9
A
CYS
13
A
CYS
13
A
ARG
19
A
ARG
19
A
ALA
23
A
ALA
23
A
LEU
32
A
LEU
32
A
PRO
37
A
PRO
37
A
LEU
221
A
LEU
221
A
ALA
226
A
ALA
226
A
VAL
213
A
VAL
213
A
LYS
218
A
LYS
218
A
ALA
40
A
ALA
40
A
LEU
43
A
LEU
43
A
HIS
193
A
HIS
193
A
ILE
198
A
ILE
198
A
PHE
184
A
PHE
184
A
GLU
187
A
GLU
187
A
SER
63
A
SER
63
A
LYS
64
A
LYS
64
A
PHE
72
A
PHE
72
A
TYR
73
A
TYR
73
A
ASN
206
A
ASN
206
A
HIS
207
A
HIS
207
A
PHE
237
A
PHE
237
A
THR
238
A
THR
238
BINDING SITE FOR RESIDUE ZN A 501
A
ZN
501
Software
4
BINDING SITE FOR RESIDUE ZN A 502
A
ZN
502
Software
4
BINDING SITE FOR RESIDUE ZN A 503
A
ZN
503
Software
4
BINDING SITE FOR RESIDUE SAH A 504
A
SAH
504
Software
12
BINDING SITE FOR RESIDUE PE8 A 505
A
PE8
505
Software
9
BINDING SITE FOR RESIDUE NI A 506
A
NI
506
Software
1
BINDING SITE FOR RESIDUE NI A 507
A
NI
507
Software
2
A
CYS
52
A
CYS
52
4
1_555
A
CYS
55
A
CYS
55
4
1_555
A
CYS
74
A
CYS
74
4
1_555
A
CYS
78
A
CYS
78
4
1_555
A
CYS
65
A
CYS
65
4
1_555
A
CYS
68
A
CYS
68
4
1_555
A
HIS
86
A
HIS
86
4
1_555
A
CYS
90
A
CYS
90
4
1_555
A
CYS
209
A
CYS
209
4
1_555
A
CYS
262
A
CYS
262
4
1_555
A
CYS
264
A
CYS
264
4
1_555
A
CYS
267
A
CYS
267
4
1_555
A
GLY
16
A
GLY
16
12
1_555
A
LYS
17
A
LYS
17
12
1_555
A
ARG
19
A
ARG
19
12
1_555
A
HIS
137
A
HIS
137
12
1_555
A
ASN
182
A
ASN
182
12
1_555
A
ALA
203
A
ALA
203
12
1_555
A
ASN
206
A
ASN
206
12
1_555
A
HIS
207
A
HIS
207
12
1_555
A
TYR
240
A
TYR
240
12
1_555
A
TYR
258
A
TYR
258
12
1_555
A
PHE
260
A
PHE
260
12
1_555
A
HOH
615
J
HOH
12
1_555
A
GLU
190
A
GLU
190
9
1_555
A
LYS
309
A
LYS
309
9
1_555
A
TYR
344
A
TYR
344
9
1_555
A
GLY
348
A
GLY
348
9
1_555
A
LEU
351
A
LEU
351
9
1_555
A
TRP
356
A
TRP
356
9
1_555
A
LYS
387
A
LYS
387
9
1_555
A
HOH
661
J
HOH
9
1_555
B
ARG
269
B
ARG
9
9
1_555
A
CYS
13
A
CYS
13
1
1_555
A
CYS
210
A
CYS
210
2
1_555
A
HOH
665
J
HOH
2
1_555
79
I 4