0.019427 0.000000 0.002938 0.000000 0.016794 0.000000 0.000000 0.000000 0.017037 0.00000 0.00000 0.00000 Kolli, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 98.60 90.00 51.474 59.545 59.362 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N O N 90 N C N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 S C N 100 N C N 101 N O N 102 N C N 103 N C N 104 N C N 105 N O N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 N C N 139 N C N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N C N 148 N O N 149 N C N 150 N O N 151 N C N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 N C Y 166 N C Y 167 N N Y 168 N C Y 169 N C Y 170 N N N 171 N O N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N O N 183 N H N 184 N H N 185 N N N 186 S C N 187 N C N 188 N O N 189 S C N 190 N C N 191 N C N 192 N C N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N N N 208 S C N 209 N C N 210 N O N 211 N C N 212 N C N 213 N C N 214 N C N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N N N 230 S C N 231 N C N 232 N O N 233 N C N 234 N C N 235 N C N 236 N C N 237 N N N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N S N 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C Y 279 N C Y 280 N C Y 281 N C Y 282 N C Y 283 N C Y 284 N C N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N N N 298 S C N 299 N C N 300 N O N 301 N C N 302 N C N 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 N C N 319 N O N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 R C N 333 N O N 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C Y 350 N C Y 351 N C Y 352 N C Y 353 N N Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C N 359 N O N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C Y 381 N C Y 382 N C N 383 N O N 384 N O N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C N 401 N C N 402 N C N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N doub N 158 N sing N 159 N sing N 160 N sing N 161 N sing Y 162 N sing Y 163 N doub Y 164 N doub N 165 N sing Y 166 N sing N 167 N sing Y 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing Y 270 N doub Y 271 N sing Y 272 N sing N 273 N sing Y 274 N doub N 275 N sing Y 276 N doub N 277 N sing Y 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing Y 339 N doub Y 340 N sing Y 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N sing Y 348 N doub N 349 N sing Y 350 N doub N 351 N sing Y 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing Y 367 N doub Y 368 N sing Y 369 N sing N 370 N sing Y 371 N doub N 372 N sing Y 373 N doub N 374 N sing Y 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing US J.Virol. JOVIAM 0825 0022-538X 88 7145 7154 10.1128/JVI.00266-14 24719428 HIV-1 protease-substrate coevolution in nelfinavir resistance. 2014 10.2210/pdb4obd/pdb pdb_00004obd 100 1 Mirrors CCD 2009-03-09 MAR CCD 165 mm Si(111) double-crystal SINGLE WAVELENGTH M x-ray 1 1.033 1.0 14-ID-B APS 1.033 SYNCHROTRON APS BEAMLINE 14-ID-B 10814.804 HIV-1 Protease 3.4.23.16 Q7K, D25N, D30N, N88D 4 man polymer 1234.366 p1-p6 peptide UNP residues 446-455 L6F, S8N 2 syn polymer 92.094 GLYCEROL 1 syn non-polymer 62.068 1,2-ETHANEDIOL 3 syn non-polymer 18.015 water 83 nat water PR, Retropepsin no no PQITLWKRPLVTIRIGGQLKEALLNTGADNTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPT PVNIIGRDLLTQIGCTLNF PQITLWKRPLVTIRIGGQLKEALLNTGADNTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPT PVNIIGRDLLTQIGCTLNF A,B,C,D polypeptide(L) no no RPGNFFQNRP RPGNFFQNRP E,F polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HIV-1 group M subtype B (isolate ARV2/SF2) sample gag-pol 11685 Human immunodeficiency virus type 1 562 Escherichia coli TAP106 Plasmid pXC35 1 1.97 37.55 VAPOR DIFFUSION, HANGING DROP 6.5 24% PEG 5000, 0.3M ammonium sulfate, 0.5M MES monohydrate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Refinement description Data collection Database references Derived calculations Refinement description 1 0 2014-11-26 1 1 2017-11-22 1 2 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2014-01-07 REL REL GOL GLYCEROL EDO 1,2-ETHANEDIOL HOH water 11676 HIV-1 Human immunodeficiency virus 1 sample 1T3R PDB entry 1T3R PDB experimental model GOL 1 3 GOL GOL 101 B EDO 1 4 EDO EDO 102 B EDO 1 4 EDO EDO 101 C EDO 1 4 EDO EDO 101 E HOH 1 5 HOH HOH 101 A HOH 41 5 HOH HOH 102 A HOH 55 5 HOH HOH 103 A HOH 70 5 HOH HOH 104 A HOH 73 5 HOH HOH 105 A HOH 78 5 HOH HOH 106 A HOH 83 5 HOH HOH 107 A HOH 92 5 HOH HOH 108 A HOH 97 5 HOH HOH 109 A HOH 104 5 HOH HOH 110 A HOH 106 5 HOH HOH 111 A HOH 115 5 HOH HOH 112 A HOH 118 5 HOH HOH 113 A HOH 120 5 HOH HOH 114 A HOH 121 5 HOH HOH 115 A HOH 122 5 HOH HOH 116 A HOH 128 5 HOH HOH 117 A HOH 132 5 HOH HOH 118 A HOH 151 5 HOH HOH 119 A HOH 155 5 HOH HOH 120 A HOH 158 5 HOH HOH 121 A HOH 157 5 HOH HOH 122 A HOH 4 5 HOH HOH 201 B HOH 5 5 HOH HOH 202 B HOH 15 5 HOH HOH 203 B HOH 16 5 HOH HOH 204 B HOH 20 5 HOH HOH 205 B HOH 22 5 HOH HOH 206 B HOH 27 5 HOH HOH 207 B HOH 37 5 HOH HOH 208 B HOH 40 5 HOH HOH 209 B HOH 42 5 HOH HOH 210 B HOH 43 5 HOH HOH 211 B HOH 44 5 HOH HOH 212 B HOH 46 5 HOH HOH 213 B HOH 51 5 HOH HOH 214 B HOH 54 5 HOH HOH 215 B HOH 58 5 HOH HOH 216 B HOH 60 5 HOH HOH 217 B HOH 69 5 HOH HOH 218 B HOH 79 5 HOH HOH 219 B HOH 80 5 HOH HOH 220 B HOH 82 5 HOH HOH 221 B HOH 89 5 HOH HOH 222 B HOH 98 5 HOH HOH 223 B HOH 101 5 HOH HOH 224 B HOH 108 5 HOH HOH 225 B HOH 111 5 HOH HOH 226 B HOH 114 5 HOH HOH 227 B HOH 116 5 HOH HOH 228 B HOH 126 5 HOH HOH 229 B HOH 136 5 HOH HOH 230 B HOH 150 5 HOH HOH 231 B HOH 159 5 HOH HOH 232 B HOH 19 5 HOH HOH 201 C HOH 36 5 HOH HOH 202 C HOH 45 5 HOH HOH 203 C HOH 61 5 HOH HOH 204 C HOH 72 5 HOH HOH 205 C HOH 109 5 HOH HOH 206 C HOH 135 5 HOH HOH 207 C HOH 146 5 HOH HOH 208 C HOH 160 5 HOH HOH 209 C HOH 161 5 HOH HOH 210 C HOH 14 5 HOH HOH 101 D HOH 39 5 HOH HOH 102 D HOH 48 5 HOH HOH 103 D HOH 52 5 HOH HOH 104 D HOH 53 5 HOH HOH 105 D HOH 74 5 HOH HOH 106 D HOH 75 5 HOH HOH 107 D HOH 84 5 HOH HOH 108 D HOH 100 5 HOH HOH 109 D HOH 107 5 HOH HOH 110 D HOH 123 5 HOH HOH 111 D HOH 125 5 HOH HOH 112 D HOH 152 5 HOH HOH 113 D HOH 162 5 HOH HOH 114 D HOH 163 5 HOH HOH 115 D HOH 12 5 HOH HOH 201 E HOH 18 5 HOH HOH 202 E HOH 23 5 HOH HOH 101 F HOH 164 5 HOH HOH 102 F 45.420 2.500 2.500 38.690 38.690 Phaser MODE: MR_AUTO PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A ARG 14 n 14 ARG 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASN 25 n 25 ASN 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASN 30 n 30 ASN 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A ASN 37 n 37 ASN 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A LYS 41 n 41 LYS 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A PRO 63 n 63 PRO 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASP 88 n 88 ASP 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B LYS 7 n 7 LYS 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B ARG 14 n 14 ARG 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASN 25 n 25 ASN 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASN 30 n 30 ASN 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B LEU 33 n 33 LEU 33 B GLU 34 n 34 GLU 34 B GLU 35 n 35 GLU 35 B MET 36 n 36 MET 36 B ASN 37 n 37 ASN 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B LYS 41 n 41 LYS 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B PRO 63 n 63 PRO 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B CYS 67 n 67 CYS 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASP 88 n 88 ASP 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B CYS 95 n 95 CYS 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B PRO 1 n 1 PRO 1 C GLN 2 n 2 GLN 2 C ILE 3 n 3 ILE 3 C THR 4 n 4 THR 4 C LEU 5 n 5 LEU 5 C TRP 6 n 6 TRP 6 C LYS 7 n 7 LYS 7 C ARG 8 n 8 ARG 8 C PRO 9 n 9 PRO 9 C LEU 10 n 10 LEU 10 C VAL 11 n 11 VAL 11 C THR 12 n 12 THR 12 C ILE 13 n 13 ILE 13 C ARG 14 n 14 ARG 14 C ILE 15 n 15 ILE 15 C GLY 16 n 16 GLY 16 C GLY 17 n 17 GLY 17 C GLN 18 n 18 GLN 18 C LEU 19 n 19 LEU 19 C LYS 20 n 20 LYS 20 C GLU 21 n 21 GLU 21 C ALA 22 n 22 ALA 22 C LEU 23 n 23 LEU 23 C LEU 24 n 24 LEU 24 C ASN 25 n 25 ASN 25 C THR 26 n 26 THR 26 C GLY 27 n 27 GLY 27 C ALA 28 n 28 ALA 28 C ASP 29 n 29 ASP 29 C ASN 30 n 30 ASN 30 C THR 31 n 31 THR 31 C VAL 32 n 32 VAL 32 C LEU 33 n 33 LEU 33 C GLU 34 n 34 GLU 34 C GLU 35 n 35 GLU 35 C MET 36 n 36 MET 36 C ASN 37 n 37 ASN 37 C LEU 38 n 38 LEU 38 C PRO 39 n 39 PRO 39 C GLY 40 n 40 GLY 40 C LYS 41 n 41 LYS 41 C TRP 42 n 42 TRP 42 C LYS 43 n 43 LYS 43 C PRO 44 n 44 PRO 44 C LYS 45 n 45 LYS 45 C MET 46 n 46 MET 46 C ILE 47 n 47 ILE 47 C GLY 48 n 48 GLY 48 C GLY 49 n 49 GLY 49 C ILE 50 n 50 ILE 50 C GLY 51 n 51 GLY 51 C GLY 52 n 52 GLY 52 C PHE 53 n 53 PHE 53 C ILE 54 n 54 ILE 54 C LYS 55 n 55 LYS 55 C VAL 56 n 56 VAL 56 C ARG 57 n 57 ARG 57 C GLN 58 n 58 GLN 58 C TYR 59 n 59 TYR 59 C ASP 60 n 60 ASP 60 C GLN 61 n 61 GLN 61 C ILE 62 n 62 ILE 62 C PRO 63 n 63 PRO 63 C ILE 64 n 64 ILE 64 C GLU 65 n 65 GLU 65 C ILE 66 n 66 ILE 66 C CYS 67 n 67 CYS 67 C GLY 68 n 68 GLY 68 C HIS 69 n 69 HIS 69 C LYS 70 n 70 LYS 70 C ALA 71 n 71 ALA 71 C ILE 72 n 72 ILE 72 C GLY 73 n 73 GLY 73 C THR 74 n 74 THR 74 C VAL 75 n 75 VAL 75 C LEU 76 n 76 LEU 76 C VAL 77 n 77 VAL 77 C GLY 78 n 78 GLY 78 C PRO 79 n 79 PRO 79 C THR 80 n 80 THR 80 C PRO 81 n 81 PRO 81 C VAL 82 n 82 VAL 82 C ASN 83 n 83 ASN 83 C ILE 84 n 84 ILE 84 C ILE 85 n 85 ILE 85 C GLY 86 n 86 GLY 86 C ARG 87 n 87 ARG 87 C ASP 88 n 88 ASP 88 C LEU 89 n 89 LEU 89 C LEU 90 n 90 LEU 90 C THR 91 n 91 THR 91 C GLN 92 n 92 GLN 92 C ILE 93 n 93 ILE 93 C GLY 94 n 94 GLY 94 C CYS 95 n 95 CYS 95 C THR 96 n 96 THR 96 C LEU 97 n 97 LEU 97 C ASN 98 n 98 ASN 98 C PHE 99 n 99 PHE 99 C PRO 1 n 1 PRO 1 D GLN 2 n 2 GLN 2 D ILE 3 n 3 ILE 3 D THR 4 n 4 THR 4 D LEU 5 n 5 LEU 5 D TRP 6 n 6 TRP 6 D LYS 7 n 7 LYS 7 D ARG 8 n 8 ARG 8 D PRO 9 n 9 PRO 9 D LEU 10 n 10 LEU 10 D VAL 11 n 11 VAL 11 D THR 12 n 12 THR 12 D ILE 13 n 13 ILE 13 D ARG 14 n 14 ARG 14 D ILE 15 n 15 ILE 15 D GLY 16 n 16 GLY 16 D GLY 17 n 17 GLY 17 D GLN 18 n 18 GLN 18 D LEU 19 n 19 LEU 19 D LYS 20 n 20 LYS 20 D GLU 21 n 21 GLU 21 D ALA 22 n 22 ALA 22 D LEU 23 n 23 LEU 23 D LEU 24 n 24 LEU 24 D ASN 25 n 25 ASN 25 D THR 26 n 26 THR 26 D GLY 27 n 27 GLY 27 D ALA 28 n 28 ALA 28 D ASP 29 n 29 ASP 29 D ASN 30 n 30 ASN 30 D THR 31 n 31 THR 31 D VAL 32 n 32 VAL 32 D LEU 33 n 33 LEU 33 D GLU 34 n 34 GLU 34 D GLU 35 n 35 GLU 35 D MET 36 n 36 MET 36 D ASN 37 n 37 ASN 37 D LEU 38 n 38 LEU 38 D PRO 39 n 39 PRO 39 D GLY 40 n 40 GLY 40 D LYS 41 n 41 LYS 41 D TRP 42 n 42 TRP 42 D LYS 43 n 43 LYS 43 D PRO 44 n 44 PRO 44 D LYS 45 n 45 LYS 45 D MET 46 n 46 MET 46 D ILE 47 n 47 ILE 47 D GLY 48 n 48 GLY 48 D GLY 49 n 49 GLY 49 D ILE 50 n 50 ILE 50 D GLY 51 n 51 GLY 51 D GLY 52 n 52 GLY 52 D PHE 53 n 53 PHE 53 D ILE 54 n 54 ILE 54 D LYS 55 n 55 LYS 55 D VAL 56 n 56 VAL 56 D ARG 57 n 57 ARG 57 D GLN 58 n 58 GLN 58 D TYR 59 n 59 TYR 59 D ASP 60 n 60 ASP 60 D GLN 61 n 61 GLN 61 D ILE 62 n 62 ILE 62 D PRO 63 n 63 PRO 63 D ILE 64 n 64 ILE 64 D GLU 65 n 65 GLU 65 D ILE 66 n 66 ILE 66 D CYS 67 n 67 CYS 67 D GLY 68 n 68 GLY 68 D HIS 69 n 69 HIS 69 D LYS 70 n 70 LYS 70 D ALA 71 n 71 ALA 71 D ILE 72 n 72 ILE 72 D GLY 73 n 73 GLY 73 D THR 74 n 74 THR 74 D VAL 75 n 75 VAL 75 D LEU 76 n 76 LEU 76 D VAL 77 n 77 VAL 77 D GLY 78 n 78 GLY 78 D PRO 79 n 79 PRO 79 D THR 80 n 80 THR 80 D PRO 81 n 81 PRO 81 D VAL 82 n 82 VAL 82 D ASN 83 n 83 ASN 83 D ILE 84 n 84 ILE 84 D ILE 85 n 85 ILE 85 D GLY 86 n 86 GLY 86 D ARG 87 n 87 ARG 87 D ASP 88 n 88 ASP 88 D LEU 89 n 89 LEU 89 D LEU 90 n 90 LEU 90 D THR 91 n 91 THR 91 D GLN 92 n 92 GLN 92 D ILE 93 n 93 ILE 93 D GLY 94 n 94 GLY 94 D CYS 95 n 95 CYS 95 D THR 96 n 96 THR 96 D LEU 97 n 97 LEU 97 D ASN 98 n 98 ASN 98 D PHE 99 n 99 PHE 99 D n 1 1 E PRO 2 n 2 PRO 2 E GLY 3 n 3 GLY 3 E ASN 4 n 4 ASN 4 E PHE 5 n 5 PHE 5 E PHE 6 n 6 PHE 6 E GLN 7 n 7 GLN 7 E ASN 8 n 8 ASN 8 E ARG 9 n 9 ARG 9 E PRO 10 n 10 PRO 10 E n 1 1 F PRO 2 n 2 PRO 2 F GLY 3 n 3 GLY 3 F ASN 4 n 4 ASN 4 F PHE 5 n 5 PHE 5 F PHE 6 n 6 PHE 6 F GLN 7 n 7 GLN 7 F ASN 8 n 8 ASN 8 F ARG 9 n 9 ARG 9 F n 10 10 F 2.2307 1.9797 1.4829 2.2003 0.2432 3.5844 -0.1901 0.2104 0.0157 -0.1318 0.2339 0.0329 -0.2158 0.0183 -0.0438 0.1205 -0.0186 -0.0034 0.0525 0.0344 0.0355 refined -5.4561 3.8512 -12.2458 X-RAY DIFFRACTION 8.0950 -1.3823 -4.0686 0.2891 0.7097 2.0492 0.0328 -0.2704 0.2903 0.0068 0.0787 0.0642 -0.0148 0.1448 -0.1115 0.0824 -0.0060 0.0299 0.0329 0.0529 0.2551 refined -6.0752 7.0953 0.6419 X-RAY DIFFRACTION 7.0485 -0.3763 -0.9459 1.7083 0.1684 0.1353 -0.0585 0.4493 -0.2477 0.0307 0.0581 -0.4311 0.0071 -0.0530 0.0004 0.0608 -0.0212 0.0039 0.0658 -0.0436 0.1274 refined -4.8511 -9.2293 -12.0064 X-RAY DIFFRACTION 0.9892 -0.3408 -1.4816 0.2311 0.7978 2.9480 0.0790 0.1013 0.0623 0.0408 0.0181 -0.0210 0.0673 -0.0232 -0.0971 0.1404 -0.0017 -0.0110 0.0540 0.0130 0.0388 refined -11.2311 -4.4137 -2.6257 X-RAY DIFFRACTION 7.4826 1.3068 1.2932 7.7675 1.2478 1.1925 0.0593 0.0571 0.1371 0.2367 -0.0422 0.2915 -0.1224 -0.2372 -0.0171 0.0552 0.0231 0.0255 0.1035 0.0196 0.0193 refined -25.1982 -10.2650 3.0178 X-RAY DIFFRACTION 2.7612 -1.7272 0.4773 1.1237 -0.0451 2.1683 0.0382 0.1244 -0.0025 0.0060 -0.0664 -0.0053 -0.1079 0.0360 0.0282 0.1604 -0.0122 -0.0172 0.0687 -0.0193 0.0318 refined 0.6411 -2.8926 -1.9581 X-RAY DIFFRACTION 4.8630 -1.3085 -2.2346 3.7306 2.7775 2.4312 -0.1553 -0.3462 -0.0884 -0.0543 0.2846 -0.2376 0.0171 0.3010 -0.1293 0.0387 0.0542 0.0156 0.1469 0.0157 0.0302 refined 15.1126 -6.8008 5.6847 X-RAY DIFFRACTION 6.9738 1.5346 1.0726 1.6486 0.4825 0.3126 -0.0180 0.0452 -0.0895 0.0551 -0.0160 0.0421 0.0182 0.0188 0.0340 0.0796 -0.0000 0.0074 0.0501 0.0024 0.0567 refined -13.2290 -17.0493 4.1479 X-RAY DIFFRACTION 6.1530 2.4415 0.9522 1.7901 -0.8238 1.9116 0.0504 -0.2035 0.0097 -0.0209 -0.0822 -0.0100 0.0591 -0.0018 0.0318 0.0850 -0.0109 -0.0112 0.1122 0.0244 0.0206 refined 2.6734 -6.7405 12.1455 X-RAY DIFFRACTION 2.2683 2.7535 -0.8904 5.4018 -3.8260 4.0100 -0.0824 0.0590 -0.1745 -0.0938 0.3414 0.0373 0.0298 -0.3912 -0.2589 0.0635 -0.0326 0.0193 0.0996 -0.0041 0.0603 refined -24.0689 -12.8516 -1.4005 X-RAY DIFFRACTION 8.4601 3.8435 -2.3477 1.7904 -0.9167 1.1778 0.0575 0.0032 -0.2299 0.0368 0.0238 -0.1469 -0.0083 0.1055 -0.0813 0.0786 -0.0135 0.0132 0.0894 -0.0028 0.0637 refined -22.4515 1.0468 -6.6783 X-RAY DIFFRACTION 3.5120 -1.4747 1.1124 4.0542 0.3667 0.5547 0.0981 0.3586 -0.2535 -0.2835 0.0552 -0.1768 -0.0255 0.1643 -0.1533 0.1216 -0.0187 0.0293 0.1418 -0.0137 0.0557 refined -21.2805 -5.7829 -7.2882 X-RAY DIFFRACTION 1.2950 0.7125 -0.4064 8.3093 -7.5150 6.8471 0.2089 -0.1766 0.0990 0.0255 -0.4512 -0.2253 0.0088 0.4040 0.2423 0.0797 -0.0374 -0.0158 0.1189 0.0359 0.0524 refined 13.6042 -0.9529 6.1034 X-RAY DIFFRACTION 8.2297 0.7871 3.6466 0.2047 0.5537 2.0374 0.0079 -0.1192 -0.1387 0.0313 0.0030 0.0079 0.0565 -0.1075 -0.0110 0.0846 0.0038 -0.0035 0.0684 0.0032 0.0679 refined 11.6934 -0.3539 -8.1773 X-RAY DIFFRACTION 3.2063 1.1834 -0.9747 0.9717 -0.0068 0.5306 -0.0019 -0.1528 -0.0391 -0.0370 -0.0539 0.0341 -0.0241 0.0535 0.0559 0.1155 -0.0055 -0.0019 0.0586 0.0492 0.0688 refined 10.5982 1.9911 -1.9004 X-RAY DIFFRACTION 4.2386 2.9926 -3.2689 2.6920 -1.8451 2.9142 0.2120 -0.1279 0.0799 0.2330 -0.0734 0.0195 -0.0984 0.1429 -0.1386 0.1014 -0.0026 0.0054 0.0865 -0.0305 0.1021 refined -14.8646 -5.5758 4.2485 X-RAY DIFFRACTION 1.0600 0.5639 1.7498 2.7504 0.0744 3.1927 0.1271 0.0406 -0.0431 0.0012 -0.0298 0.0697 0.2110 0.0924 -0.0973 0.1080 0.0026 0.0145 0.0478 0.0111 0.0548 refined 4.3337 -9.1804 0.8058 X-RAY DIFFRACTION 7.1512 0.2416 1.9215 0.6193 -0.7899 1.7126 -0.0739 0.1260 0.0377 0.0397 0.0771 0.0096 -0.0696 -0.0700 -0.0032 0.1070 0.0055 -0.0107 0.1077 0.0019 0.0015 refined -14.2191 -4.4264 -9.9072 X-RAY DIFFRACTION 6.9672 1.0108 0.2239 1.3332 -0.2412 0.0703 0.0583 -0.0835 0.0719 0.0560 -0.0762 -0.0629 -0.0088 0.0120 0.0179 0.1181 -0.0008 0.0053 0.0296 -0.0039 0.0634 refined 3.4558 4.3427 -3.6863 X-RAY DIFFRACTION A 1 A 5 X-RAY DIFFRACTION 1 A 94 A 99 X-RAY DIFFRACTION 1 B 1 B 5 X-RAY DIFFRACTION 1 B 94 B 99 X-RAY DIFFRACTION 1 A 6 A 10 X-RAY DIFFRACTION 2 B 6 B 10 X-RAY DIFFRACTION 3 A 22 A 32 X-RAY DIFFRACTION 4 A 33 A 43 X-RAY DIFFRACTION 5 B 22 B 32 X-RAY DIFFRACTION 6 B 33 B 43 X-RAY DIFFRACTION 7 A 44 A 49 X-RAY DIFFRACTION 8 A 52 A 56 X-RAY DIFFRACTION 8 B 44 B 49 X-RAY DIFFRACTION 9 B 52 B 56 X-RAY DIFFRACTION 9 A 57 A 62 X-RAY DIFFRACTION 10 A 63 A 68 X-RAY DIFFRACTION 11 A 69 A 76 X-RAY DIFFRACTION 12 B 57 B 62 X-RAY DIFFRACTION 13 B 63 B 68 X-RAY DIFFRACTION 14 B 69 B 76 X-RAY DIFFRACTION 15 A 77 A 85 X-RAY DIFFRACTION 16 B 77 B 85 X-RAY DIFFRACTION 17 A 86 A 93 X-RAY DIFFRACTION 18 B 86 B 93 X-RAY DIFFRACTION 19 author_and_software_defined_assembly PISA 3 trimeric author_and_software_defined_assembly PISA 3 trimeric 5960 -23 9110 5150 -25 8920 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B O THR 96 B O THR 96 A N ASN 98 A N ASN 98 A N LEU 97 A N LEU 97 B O ILE 3 B O ILE 3 A N LYS 43 A N LYS 43 A O GLN 58 A O GLN 58 A N TYR 59 A N TYR 59 A O VAL 75 A O VAL 75 A O LEU 76 A O LEU 76 A N LEU 33 A N LEU 33 A N VAL 32 A N VAL 32 A O ILE 84 A O ILE 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O ALA 22 A O ALA 22 A N VAL 11 A N VAL 11 A N ARG 14 A N ARG 14 A O GLU 65 A O GLU 65 E O ASN 8 E O ASN 8 B N GLY 48 B N GLY 48 B N LYS 43 B N LYS 43 B O GLN 58 B O GLN 58 B N ILE 64 B N ILE 64 B O ALA 71 B O ALA 71 B O LEU 76 B O LEU 76 B N LEU 33 B N LEU 33 B N VAL 32 B N VAL 32 B O ILE 84 B O ILE 84 B O ASN 83 B O ASN 83 B N LEU 23 B N LEU 23 B O ALA 22 B O ALA 22 B N VAL 11 B N VAL 11 B N ARG 14 B N ARG 14 B O GLU 65 B O GLU 65 C N ILE 3 C N ILE 3 D O LEU 97 D O LEU 97 D O THR 96 D O THR 96 C N ASN 98 C N ASN 98 C N LEU 97 C N LEU 97 D O ILE 3 D O ILE 3 C N LYS 43 C N LYS 43 C O GLN 58 C O GLN 58 C N ARG 57 C N ARG 57 C O VAL 77 C O VAL 77 C O LEU 76 C O LEU 76 C N LEU 33 C N LEU 33 C N VAL 32 C N VAL 32 C O ILE 84 C O ILE 84 C O ILE 85 C O ILE 85 C N LEU 23 C N LEU 23 C O LYS 20 C O LYS 20 C N ILE 13 C N ILE 13 C N ARG 14 C N ARG 14 C O GLU 65 C O GLU 65 D N ILE 47 D N ILE 47 D O ILE 54 D O ILE 54 D N ILE 64 D N ILE 64 D O ALA 71 D O ALA 71 D O LEU 76 D O LEU 76 D N LEU 33 D N LEU 33 D N VAL 32 D N VAL 32 D O ILE 84 D O ILE 84 D O ILE 85 D O ILE 85 D N LEU 23 D N LEU 23 D O LYS 20 D O LYS 20 D N ILE 13 D N ILE 13 D N ARG 14 D N ARG 14 D O GLU 65 D O GLU 65 1 A CG LYS 7 A CG LYS 7 1 Y 1 A CD LYS 7 A CD LYS 7 1 Y 1 A CE LYS 7 A CE LYS 7 1 Y 1 A NZ LYS 7 A NZ LYS 7 1 Y 1 A CG ARG 14 A CG ARG 14 1 Y 1 A CD ARG 14 A CD ARG 14 1 Y 1 A NE ARG 14 A NE ARG 14 1 Y 1 A CZ ARG 14 A CZ ARG 14 1 Y 1 A NH1 ARG 14 A NH1 ARG 14 1 Y 1 A NH2 ARG 14 A NH2 ARG 14 1 Y 1 A CG LYS 20 A CG LYS 20 1 Y 1 A CD LYS 20 A CD LYS 20 1 Y 1 A CE LYS 20 A CE LYS 20 1 Y 1 A NZ LYS 20 A NZ LYS 20 1 Y 1 A CG GLU 35 A CG GLU 35 1 Y 1 A CD GLU 35 A CD GLU 35 1 Y 1 A OE1 GLU 35 A OE1 GLU 35 1 Y 1 A OE2 GLU 35 A OE2 GLU 35 1 Y 1 A CG LYS 41 A CG LYS 41 1 Y 1 A CD LYS 41 A CD LYS 41 1 Y 1 A CE LYS 41 A CE LYS 41 1 Y 1 A NZ LYS 41 A NZ LYS 41 1 Y 1 A CG LYS 43 A CG LYS 43 1 Y 1 A CD LYS 43 A CD LYS 43 1 Y 1 A CE LYS 43 A CE LYS 43 1 Y 1 A NZ LYS 43 A NZ LYS 43 1 Y 1 A CG GLN 61 A CG GLN 61 1 Y 1 A CD GLN 61 A CD GLN 61 1 Y 1 A OE1 GLN 61 A OE1 GLN 61 1 Y 1 A NE2 GLN 61 A NE2 GLN 61 1 Y 1 A CG LYS 70 A CG LYS 70 1 Y 1 A CD LYS 70 A CD LYS 70 1 Y 1 A CE LYS 70 A CE LYS 70 1 Y 1 A NZ LYS 70 A NZ LYS 70 1 Y 1 B CG LYS 7 B CG LYS 7 1 Y 1 B CD LYS 7 B CD LYS 7 1 Y 1 B CE LYS 7 B CE LYS 7 1 Y 1 B NZ LYS 7 B NZ LYS 7 1 Y 1 B CG LYS 43 B CG LYS 43 1 Y 1 B CD LYS 43 B CD LYS 43 1 Y 1 B CE LYS 43 B CE LYS 43 1 Y 1 B NZ LYS 43 B NZ LYS 43 1 Y 1 B CG LYS 70 B CG LYS 70 1 Y 1 B CD LYS 70 B CD LYS 70 1 Y 1 B CE LYS 70 B CE LYS 70 1 Y 1 B NZ LYS 70 B NZ LYS 70 1 Y 1 C CG GLN 2 C CG GLN 2 1 Y 1 C CD GLN 2 C CD GLN 2 1 Y 1 C OE1 GLN 2 C OE1 GLN 2 1 Y 1 C NE2 GLN 2 C NE2 GLN 2 1 Y 1 C CG LYS 7 C CG LYS 7 1 Y 1 C CD LYS 7 C CD LYS 7 1 Y 1 C CE LYS 7 C CE LYS 7 1 Y 1 C NZ LYS 7 C NZ LYS 7 1 Y 1 C CG LYS 41 C CG LYS 41 1 Y 1 C CD LYS 41 C CD LYS 41 1 Y 1 C CE LYS 41 C CE LYS 41 1 Y 1 C NZ LYS 41 C NZ LYS 41 1 Y 1 C CG LYS 55 C CG LYS 55 1 Y 1 C CD LYS 55 C CD LYS 55 1 Y 1 C CE LYS 55 C CE LYS 55 1 Y 1 C NZ LYS 55 C NZ LYS 55 1 Y 1 C CG ASP 60 C CG ASP 60 1 Y 1 C OD1 ASP 60 C OD1 ASP 60 1 Y 1 C OD2 ASP 60 C OD2 ASP 60 1 Y 1 C CG GLN 61 C CG GLN 61 1 Y 1 C CD GLN 61 C CD GLN 61 1 Y 1 C OE1 GLN 61 C OE1 GLN 61 1 Y 1 C NE2 GLN 61 C NE2 GLN 61 1 Y 1 C CG GLU 65 C CG GLU 65 1 Y 1 C CD GLU 65 C CD GLU 65 1 Y 1 C OE1 GLU 65 C OE1 GLU 65 1 Y 1 C OE2 GLU 65 C OE2 GLU 65 1 Y 1 C CG LYS 70 C CG LYS 70 1 Y 1 C CD LYS 70 C CD LYS 70 1 Y 1 C CE LYS 70 C CE LYS 70 1 Y 1 C NZ LYS 70 C NZ LYS 70 1 Y 1 D CG PRO 1 D CG PRO 1 1 Y 1 D CD PRO 1 D CD PRO 1 1 Y 1 D CG GLN 2 D CG GLN 2 1 Y 1 D CD GLN 2 D CD GLN 2 1 Y 1 D OE1 GLN 2 D OE1 GLN 2 1 Y 1 D NE2 GLN 2 D NE2 GLN 2 1 Y 1 D CG LYS 7 D CG LYS 7 1 Y 1 D CD LYS 7 D CD LYS 7 1 Y 1 D CE LYS 7 D CE LYS 7 1 Y 1 D NZ LYS 7 D NZ LYS 7 1 Y 1 D CG ARG 14 D CG ARG 14 1 Y 1 D CD ARG 14 D CD ARG 14 1 Y 1 D NE ARG 14 D NE ARG 14 1 Y 1 D CZ ARG 14 D CZ ARG 14 1 Y 1 D NH1 ARG 14 D NH1 ARG 14 1 Y 1 D NH2 ARG 14 D NH2 ARG 14 1 Y 1 D CG LEU 19 D CG LEU 19 1 Y 1 D CD1 LEU 19 D CD1 LEU 19 1 Y 1 D CD2 LEU 19 D CD2 LEU 19 1 Y 1 D CG LYS 41 D CG LYS 41 1 Y 1 D CD LYS 41 D CD LYS 41 1 Y 1 D CE LYS 41 D CE LYS 41 1 Y 1 D NZ LYS 41 D NZ LYS 41 1 Y 1 D CG LYS 43 D CG LYS 43 1 Y 1 D CD LYS 43 D CD LYS 43 1 Y 1 D CE LYS 43 D CE LYS 43 1 Y 1 D NZ LYS 43 D NZ LYS 43 1 Y 1 D CG LYS 45 D CG LYS 45 1 Y 1 D CD LYS 45 D CD LYS 45 1 Y 1 D CE LYS 45 D CE LYS 45 1 Y 1 D NZ LYS 45 D NZ LYS 45 1 Y 1 D CG HIS 69 D CG HIS 69 1 Y 1 D ND1 HIS 69 D ND1 HIS 69 1 Y 1 D CD2 HIS 69 D CD2 HIS 69 1 Y 1 D CE1 HIS 69 D CE1 HIS 69 1 Y 1 D NE2 HIS 69 D NE2 HIS 69 1 Y 1 D CG LYS 70 D CG LYS 70 1 Y 1 D CD LYS 70 D CD LYS 70 1 Y 1 D CE LYS 70 D CE LYS 70 1 Y 1 D NZ LYS 70 D NZ LYS 70 1 Y 1 D CG1 ILE 72 D CG1 ILE 72 1 Y 1 D CG2 ILE 72 D CG2 ILE 72 1 Y 1 D CD1 ILE 72 D CD1 ILE 72 1 Y 1 F CG PRO 2 F CG PRO 2 1 Y 1 F CD PRO 2 F CD PRO 2 1 Y 1 F CG ARG 9 F CG ARG 9 1 Y 1 F CD ARG 9 F CD ARG 9 1 Y 1 F NE ARG 9 F NE ARG 9 1 Y 1 F CZ ARG 9 F CZ ARG 9 1 Y 1 F NH1 ARG 9 F NH1 ARG 9 1 Y 1 F NH2 ARG 9 F NH2 ARG 9 1 Y 1 E ARG 1 E ARG 1 1 Y 1 F ARG 1 F ARG 1 1 Y 1 F PRO 10 F PRO 10 1 Y 1 A GLU 35 -39.13 132.62 1 C GLU 35 -39.31 124.44 1 D GLU 35 -36.67 123.79 1 D CYS 67 29.47 61.36 30.998 -3.24 0.00 -0.21 1.02 0.00 2.18 0.946 0.910 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.24797 0.19638 0.19905 1.90 40.0 1412 26425 5.1 98.86 1.000 0.500 5.129 0.119 RANDOM 1 Overall THROUGHOUT MOLECULAR REPLACEMENT 0.182 0.166 0.80 0.80 1.20 PDB entry 1T3R MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.90 40.0 83 3154 18 0 3053 0.008 0.019 3131 0.003 0.020 3103 1.534 1.980 4264 0.726 3.000 7087 7.358 5.000 409 42.266 24.771 109 13.977 15.000 493 16.702 15.000 15 0.101 0.200 512 0.011 0.021 3538 0.001 0.020 663 3.215 2.622 1648 3.216 2.621 1647 4.382 3.906 2050 3.801 3.004 1483 0.240 0.201 1.949 89 1981 20 99.81 1.68 50.00 4OBD 39171 0.00 2.0 0.064 1 16.85 3.8 98.8 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk Thu Nov 13 10:53:32 2008 http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program 2.1.4 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.5.0102 data extraction PDB deposit@deposit.rcsb.org Dec. 10, 2013 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.14 data collection BioCARS-developed GUI data reduction HKL-2000 data scaling HKL-2000 Crystal Structure of Nelfinavir-Resistant, Inactive HIV-1 Protease (D30N/N88D) in Complex with the p1-p6 substrate variant (L449F/S451N) 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 3 N N 4 N N 4 N N 4 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N A GLY 86 A GLY 86 HELX_P A ILE 93 A ILE 93 1 1 8 B GLY 86 B GLY 86 HELX_P B ILE 93 B ILE 93 1 2 8 C GLY 86 C GLY 86 HELX_P C ILE 93 C ILE 93 1 3 8 D GLY 86 D GLY 86 HELX_P D ILE 93 D ILE 93 1 4 8 HYDROLASE Co-evolution, Resistance, Hydrolases, HYDROLASE F PRO 2 F PRO 2 1 F GLY 3 F GLY 3 -18.41 POL_HV1A2 UNP 1 491 P03369 PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPVEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF GAG_HV1A2 UNP 2 446 P03349 RPGNFLQSRP 491 589 4OBD 1 99 P03369 A 1 1 99 491 589 4OBD 1 99 P03369 B 1 1 99 491 589 4OBD 1 99 P03369 C 1 1 99 491 589 4OBD 1 99 P03369 D 1 1 99 446 455 4OBD 1 10 P03349 E 2 1 10 446 455 4OBD 1 10 P03349 F 2 1 10 1 GLN engineered mutation LYS 7 4OBD A P03369 UNP 497 7 1 ASP engineered mutation ASN 25 4OBD A P03369 UNP 515 25 1 ASP engineered mutation ASN 30 4OBD A P03369 UNP 520 30 1 ASN engineered mutation ASP 88 4OBD A P03369 UNP 578 88 2 GLN engineered mutation LYS 7 4OBD B P03369 UNP 497 7 2 ASP engineered mutation ASN 25 4OBD B P03369 UNP 515 25 2 ASP engineered mutation ASN 30 4OBD B P03369 UNP 520 30 2 ASN engineered mutation ASP 88 4OBD B P03369 UNP 578 88 3 GLN engineered mutation LYS 7 4OBD C P03369 UNP 497 7 3 ASP engineered mutation ASN 25 4OBD C P03369 UNP 515 25 3 ASP engineered mutation ASN 30 4OBD C P03369 UNP 520 30 3 ASN engineered mutation ASP 88 4OBD C P03369 UNP 578 88 4 GLN engineered mutation LYS 7 4OBD D P03369 UNP 497 7 4 ASP engineered mutation ASN 25 4OBD D P03369 UNP 515 25 4 ASP engineered mutation ASN 30 4OBD D P03369 UNP 520 30 4 ASN engineered mutation ASP 88 4OBD D P03369 UNP 578 88 5 LEU engineered mutation PHE 6 4OBD E P03349 UNP 451 6 5 SER engineered mutation ASN 8 4OBD E P03349 UNP 453 8 6 LEU engineered mutation PHE 6 4OBD F P03349 UNP 451 6 6 SER engineered mutation ASN 8 4OBD F P03349 UNP 453 8 4 8 9 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B ILE 3 B ILE 3 A TRP 42 A TRP 42 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A VAL 32 A VAL 32 A LEU 33 A LEU 33 A ILE 84 A ILE 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 E GLN 7 E GLN 7 E ASN 8 E ASN 8 B TRP 42 B TRP 42 B GLY 49 B GLY 49 B GLY 52 B GLY 52 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B VAL 32 B VAL 32 B LEU 33 B LEU 33 B ASN 83 B ASN 83 B ILE 85 B ILE 85 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B GLY 52 B GLY 52 B ILE 66 B ILE 66 C GLN 2 C GLN 2 C ILE 3 C ILE 3 D THR 96 D THR 96 D ASN 98 D ASN 98 C THR 96 C THR 96 C ASN 98 C ASN 98 D GLN 2 D GLN 2 D ILE 3 D ILE 3 C TRP 42 C TRP 42 C GLY 48 C GLY 48 C PHE 53 C PHE 53 C ILE 66 C ILE 66 C HIS 69 C HIS 69 C VAL 77 C VAL 77 C THR 31 C THR 31 C LEU 33 C LEU 33 C ILE 84 C ILE 84 C ILE 85 C ILE 85 C GLN 18 C GLN 18 C LEU 24 C LEU 24 C LEU 10 C LEU 10 C ILE 15 C ILE 15 C PHE 53 C PHE 53 C ILE 66 C ILE 66 D LYS 43 D LYS 43 D GLY 49 D GLY 49 D GLY 52 D GLY 52 D ILE 66 D ILE 66 D HIS 69 D HIS 69 D GLY 78 D GLY 78 D VAL 32 D VAL 32 D GLU 34 D GLU 34 D ASN 83 D ASN 83 D ILE 85 D ILE 85 D GLN 18 D GLN 18 D LEU 24 D LEU 24 D LEU 10 D LEU 10 D ILE 15 D ILE 15 D GLY 52 D GLY 52 D ILE 66 D ILE 66 BINDING SITE FOR RESIDUE GOL B 101 B GOL 101 Software 4 BINDING SITE FOR RESIDUE EDO B 102 B EDO 102 Software 4 BINDING SITE FOR RESIDUE EDO C 101 C EDO 101 Software 4 BINDING SITE FOR RESIDUE EDO E 101 E EDO 101 Software 4 B LYS 7 B LYS 7 4 1_555 B ARG 8 B ARG 8 4 1_555 B LEU 10 B LEU 10 4 1_555 B HOH 212 L HOH 4 1_555 B GLN 2 B GLN 2 4 1_555 D GLU 35 D GLU 35 4 1_555 D ARG 57 D ARG 57 4 1_555 D PRO 79 D PRO 79 4 1_555 C GLU 21 C GLU 21 4 1_555 C GLU 34 C GLU 34 4 1_555 C VAL 82 C VAL 82 4 1_555 C ASN 83 C ASN 83 4 1_555 A LYS 7 A LYS 7 4 1_555 A ARG 8 A ARG 8 4 1_555 B ARG 87 B ARG 87 4 1_555 E ARG 9 E ARG 9 4 1_555 4 P 1 21 1