0.022453 0.000000 0.000000 0.000000 0.013359 0.000000 0.000000 0.000000 0.010950 0.000000 0.000000 0.000000 Hodge, C.D. Edwards, R.A. Glover, J.N.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 44.538 74.855 91.325 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C11 H9 N O5 S 267.258 2-[(4-methylphenyl)sulfonyl]-5-nitrofuran NSC697923 non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Acs Chem.Biol. 1554-8929 10 1718 1728 10.1021/acschembio.5b00222 25909880 Covalent Inhibition of Ubc13 Affects Ubiquitin Signaling and Reveals Active Site Elements Important for Targeting. 2015 105 1 Mirrors CCD 2012-08-21 RAYONIX MX300HE SINGLE WAVELENGTH M x-ray 1 1.03321 1.0 08B1-1 CLSI 1.03321 SYNCHROTRON CLSI BEAMLINE 08B1-1 17165.590 Ubiquitin-conjugating enzyme E2 variant 2 1 man polymer 17942.631 Ubiquitin-conjugating enzyme E2 N 6.3.2.19 1 man polymer 92.094 GLYCEROL 1 syn non-polymer 267.258 2-[(4-methylphenyl)sulfonyl]-5-nitrofuran 1 syn non-polymer 18.015 water 212 nat water DDVit 1, Enterocyte differentiation-associated factor 1, EDAF-1, Enterocyte differentiation-promoting factor 1, EDPF-1, MMS2 homolog, Vitamin D3-inducible protein Bendless-like ubiquitin-conjugating enzyme, Ubc13, UbcH13, Ubiquitin carrier protein N, Ubiquitin-protein ligase N no no GPLGSPEFMAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN GPLGSPEFMAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPK YPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN A polypeptide(L) no no GPLGSPEFMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFM TKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI GPLGSPEFMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFM TKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample MMS2, UBE2V2, UEV2 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) plasmid pGEX6p1 human sample BLU, UBE2N 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) plasmid pGEX6p1 1 2.17 43.27 VAPOR DIFFUSION, SITTING DROP 7.4 100 mM sodium citrate, 15% PEG 8000, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 pdbx_unobs_or_zero_occ_atoms software repository Initial release Database references Advisory Refinement description 1 0 2015-05-06 1 1 2015-08-05 1 2 2017-11-22 _software.classification _software.contact_author _software.contact_author_email _software.date _software.language _software.location _software.name _software.type _software.version RCSB Y RCSB 2014-01-28 REL REL GOL GLYCEROL N2F 2-[(4-methylphenyl)sulfonyl]-5-nitrofuran HOH water THE COMPOUND N2F LOSES THE 4-METHYLBENZENE-SULFINIC ACID GROUP ON INERACTING WITH UBC13 AND THE REMAINING PART OF N2F FORMS A COVALENT BOND WITH THE SG ATOM OF CYS B87 GOL 1 3 GOL GOL 201 A N2F 999 4 N2F N2F 201 B HOH 1 5 HOH HOH 301 A HOH 3 5 HOH HOH 302 A HOH 5 5 HOH HOH 303 A HOH 6 5 HOH HOH 304 A HOH 7 5 HOH HOH 305 A HOH 8 5 HOH HOH 306 A HOH 9 5 HOH HOH 307 A HOH 10 5 HOH HOH 308 A HOH 11 5 HOH HOH 309 A HOH 12 5 HOH HOH 310 A HOH 13 5 HOH HOH 311 A HOH 15 5 HOH HOH 312 A HOH 16 5 HOH HOH 313 A HOH 18 5 HOH HOH 314 A HOH 19 5 HOH HOH 315 A HOH 20 5 HOH HOH 316 A HOH 21 5 HOH HOH 317 A HOH 23 5 HOH HOH 318 A HOH 26 5 HOH HOH 319 A HOH 27 5 HOH HOH 320 A HOH 29 5 HOH HOH 321 A HOH 32 5 HOH HOH 322 A HOH 33 5 HOH HOH 323 A HOH 34 5 HOH HOH 324 A HOH 35 5 HOH HOH 325 A HOH 36 5 HOH HOH 326 A HOH 40 5 HOH HOH 327 A HOH 42 5 HOH HOH 328 A HOH 44 5 HOH HOH 329 A HOH 47 5 HOH HOH 330 A HOH 53 5 HOH HOH 331 A HOH 55 5 HOH HOH 332 A HOH 57 5 HOH HOH 333 A HOH 59 5 HOH HOH 334 A HOH 60 5 HOH HOH 335 A HOH 61 5 HOH HOH 336 A HOH 63 5 HOH HOH 337 A HOH 64 5 HOH HOH 338 A HOH 65 5 HOH HOH 339 A HOH 67 5 HOH HOH 340 A HOH 69 5 HOH HOH 341 A HOH 70 5 HOH HOH 342 A HOH 71 5 HOH HOH 343 A HOH 76 5 HOH HOH 344 A HOH 77 5 HOH HOH 345 A HOH 78 5 HOH HOH 346 A HOH 79 5 HOH HOH 347 A HOH 81 5 HOH HOH 348 A HOH 83 5 HOH HOH 349 A HOH 85 5 HOH HOH 350 A HOH 87 5 HOH HOH 351 A HOH 88 5 HOH HOH 352 A HOH 89 5 HOH HOH 353 A HOH 90 5 HOH HOH 354 A HOH 93 5 HOH HOH 355 A HOH 94 5 HOH HOH 356 A HOH 95 5 HOH HOH 357 A HOH 96 5 HOH HOH 358 A HOH 98 5 HOH HOH 359 A HOH 99 5 HOH HOH 360 A HOH 100 5 HOH HOH 361 A HOH 101 5 HOH HOH 362 A HOH 103 5 HOH HOH 363 A HOH 105 5 HOH HOH 364 A HOH 106 5 HOH HOH 365 A HOH 112 5 HOH HOH 366 A HOH 113 5 HOH HOH 367 A HOH 114 5 HOH HOH 368 A HOH 115 5 HOH HOH 369 A HOH 118 5 HOH HOH 370 A HOH 119 5 HOH HOH 371 A HOH 121 5 HOH HOH 372 A HOH 122 5 HOH HOH 373 A HOH 130 5 HOH HOH 374 A HOH 133 5 HOH HOH 375 A HOH 134 5 HOH HOH 376 A HOH 135 5 HOH HOH 377 A HOH 137 5 HOH HOH 378 A HOH 138 5 HOH HOH 379 A HOH 140 5 HOH HOH 380 A HOH 142 5 HOH HOH 381 A HOH 143 5 HOH HOH 382 A HOH 144 5 HOH HOH 383 A HOH 151 5 HOH HOH 384 A HOH 153 5 HOH HOH 385 A HOH 155 5 HOH HOH 386 A HOH 156 5 HOH HOH 387 A HOH 162 5 HOH HOH 388 A HOH 164 5 HOH HOH 389 A HOH 165 5 HOH HOH 390 A HOH 171 5 HOH HOH 391 A HOH 172 5 HOH HOH 392 A HOH 174 5 HOH HOH 393 A HOH 175 5 HOH HOH 394 A HOH 181 5 HOH HOH 395 A HOH 183 5 HOH HOH 396 A HOH 186 5 HOH HOH 397 A HOH 191 5 HOH HOH 398 A HOH 192 5 HOH HOH 399 A HOH 193 5 HOH HOH 400 A HOH 194 5 HOH HOH 401 A HOH 201 5 HOH HOH 402 A HOH 202 5 HOH HOH 403 A HOH 204 5 HOH HOH 404 A HOH 205 5 HOH HOH 405 A HOH 206 5 HOH HOH 406 A HOH 209 5 HOH HOH 407 A HOH 211 5 HOH HOH 408 A HOH 213 5 HOH HOH 409 A HOH 214 5 HOH HOH 410 A HOH 215 5 HOH HOH 411 A HOH 216 5 HOH HOH 412 A HOH 2 5 HOH HOH 301 B HOH 4 5 HOH HOH 302 B HOH 14 5 HOH HOH 303 B HOH 17 5 HOH HOH 304 B HOH 22 5 HOH HOH 305 B HOH 24 5 HOH HOH 306 B HOH 25 5 HOH HOH 307 B HOH 28 5 HOH HOH 308 B HOH 30 5 HOH HOH 309 B HOH 37 5 HOH HOH 310 B HOH 38 5 HOH HOH 311 B HOH 39 5 HOH HOH 312 B HOH 43 5 HOH HOH 313 B HOH 45 5 HOH HOH 314 B HOH 46 5 HOH HOH 315 B HOH 48 5 HOH HOH 316 B HOH 49 5 HOH HOH 317 B HOH 50 5 HOH HOH 318 B HOH 51 5 HOH HOH 319 B HOH 52 5 HOH HOH 320 B HOH 54 5 HOH HOH 321 B HOH 56 5 HOH HOH 322 B HOH 58 5 HOH HOH 323 B HOH 62 5 HOH HOH 324 B HOH 66 5 HOH HOH 325 B HOH 68 5 HOH HOH 326 B HOH 73 5 HOH HOH 327 B HOH 74 5 HOH HOH 328 B HOH 75 5 HOH HOH 329 B HOH 80 5 HOH HOH 330 B HOH 82 5 HOH HOH 331 B HOH 84 5 HOH HOH 332 B HOH 86 5 HOH HOH 333 B HOH 91 5 HOH HOH 334 B HOH 92 5 HOH HOH 335 B HOH 97 5 HOH HOH 336 B HOH 102 5 HOH HOH 337 B HOH 104 5 HOH HOH 338 B HOH 107 5 HOH HOH 339 B HOH 108 5 HOH HOH 340 B HOH 109 5 HOH HOH 341 B HOH 110 5 HOH HOH 342 B HOH 111 5 HOH HOH 343 B HOH 116 5 HOH HOH 344 B HOH 117 5 HOH HOH 345 B HOH 120 5 HOH HOH 346 B HOH 123 5 HOH HOH 347 B HOH 124 5 HOH HOH 348 B HOH 125 5 HOH HOH 349 B HOH 126 5 HOH HOH 350 B HOH 127 5 HOH HOH 351 B HOH 128 5 HOH HOH 352 B HOH 129 5 HOH HOH 353 B HOH 131 5 HOH HOH 354 B HOH 132 5 HOH HOH 355 B HOH 136 5 HOH HOH 356 B HOH 139 5 HOH HOH 357 B HOH 141 5 HOH HOH 358 B HOH 145 5 HOH HOH 359 B HOH 146 5 HOH HOH 360 B HOH 147 5 HOH HOH 361 B HOH 148 5 HOH HOH 362 B HOH 149 5 HOH HOH 363 B HOH 150 5 HOH HOH 364 B HOH 152 5 HOH HOH 365 B HOH 154 5 HOH HOH 366 B HOH 157 5 HOH HOH 367 B HOH 158 5 HOH HOH 368 B HOH 159 5 HOH HOH 369 B HOH 160 5 HOH HOH 370 B HOH 161 5 HOH HOH 371 B HOH 163 5 HOH HOH 372 B HOH 166 5 HOH HOH 373 B HOH 167 5 HOH HOH 374 B HOH 168 5 HOH HOH 375 B HOH 169 5 HOH HOH 376 B HOH 170 5 HOH HOH 377 B HOH 173 5 HOH HOH 378 B HOH 176 5 HOH HOH 379 B HOH 177 5 HOH HOH 380 B HOH 178 5 HOH HOH 381 B HOH 179 5 HOH HOH 382 B HOH 180 5 HOH HOH 383 B HOH 182 5 HOH HOH 384 B HOH 184 5 HOH HOH 385 B HOH 185 5 HOH HOH 386 B HOH 187 5 HOH HOH 387 B HOH 188 5 HOH HOH 388 B HOH 189 5 HOH HOH 389 B HOH 190 5 HOH HOH 390 B HOH 195 5 HOH HOH 391 B HOH 196 5 HOH HOH 392 B HOH 197 5 HOH HOH 393 B HOH 198 5 HOH HOH 394 B HOH 200 5 HOH HOH 395 B HOH 203 5 HOH HOH 396 B HOH 207 5 HOH HOH 397 B HOH 208 5 HOH HOH 398 B HOH 210 5 HOH HOH 399 B HOH 212 5 HOH HOH 400 B n 1 -7 A n 2 -6 A n 3 -5 A n 4 -4 A n 5 -3 A n 6 -2 A n 7 -1 A n 8 0 A n 9 1 A n 10 2 A n 11 3 A n 12 4 A n 13 5 A GLY 6 n 14 GLY 6 A VAL 7 n 15 VAL 7 A LYS 8 n 16 LYS 8 A VAL 9 n 17 VAL 9 A PRO 10 n 18 PRO 10 A ARG 11 n 19 ARG 11 A ASN 12 n 20 ASN 12 A PHE 13 n 21 PHE 13 A ARG 14 n 22 ARG 14 A LEU 15 n 23 LEU 15 A LEU 16 n 24 LEU 16 A GLU 17 n 25 GLU 17 A GLU 18 n 26 GLU 18 A LEU 19 n 27 LEU 19 A GLU 20 n 28 GLU 20 A GLU 21 n 29 GLU 21 A GLY 22 n 30 GLY 22 A GLN 23 n 31 GLN 23 A LYS 24 n 32 LYS 24 A GLY 25 n 33 GLY 25 A VAL 26 n 34 VAL 26 A GLY 27 n 35 GLY 27 A ASP 28 n 36 ASP 28 A GLY 29 n 37 GLY 29 A THR 30 n 38 THR 30 A VAL 31 n 39 VAL 31 A SER 32 n 40 SER 32 A TRP 33 n 41 TRP 33 A GLY 34 n 42 GLY 34 A LEU 35 n 43 LEU 35 A GLU 36 n 44 GLU 36 A ASP 37 n 45 ASP 37 A ASP 38 n 46 ASP 38 A GLU 39 n 47 GLU 39 A ASP 40 n 48 ASP 40 A MET 41 n 49 MET 41 A THR 42 n 50 THR 42 A LEU 43 n 51 LEU 43 A THR 44 n 52 THR 44 A ARG 45 n 53 ARG 45 A TRP 46 n 54 TRP 46 A THR 47 n 55 THR 47 A GLY 48 n 56 GLY 48 A MET 49 n 57 MET 49 A ILE 50 n 58 ILE 50 A ILE 51 n 59 ILE 51 A GLY 52 n 60 GLY 52 A PRO 53 n 61 PRO 53 A PRO 54 n 62 PRO 54 A ARG 55 n 63 ARG 55 A THR 56 n 64 THR 56 A ASN 57 n 65 ASN 57 A TYR 58 n 66 TYR 58 A GLU 59 n 67 GLU 59 A ASN 60 n 68 ASN 60 A ARG 61 n 69 ARG 61 A ILE 62 n 70 ILE 62 A TYR 63 n 71 TYR 63 A SER 64 n 72 SER 64 A LEU 65 n 73 LEU 65 A LYS 66 n 74 LYS 66 A VAL 67 n 75 VAL 67 A GLU 68 n 76 GLU 68 A CYS 69 n 77 CYS 69 A GLY 70 n 78 GLY 70 A PRO 71 n 79 PRO 71 A LYS 72 n 80 LYS 72 A TYR 73 n 81 TYR 73 A PRO 74 n 82 PRO 74 A GLU 75 n 83 GLU 75 A ALA 76 n 84 ALA 76 A PRO 77 n 85 PRO 77 A PRO 78 n 86 PRO 78 A SER 79 n 87 SER 79 A VAL 80 n 88 VAL 80 A ARG 81 n 89 ARG 81 A PHE 82 n 90 PHE 82 A VAL 83 n 91 VAL 83 A THR 84 n 92 THR 84 A LYS 85 n 93 LYS 85 A ILE 86 n 94 ILE 86 A ASN 87 n 95 ASN 87 A MET 88 n 96 MET 88 A ASN 89 n 97 ASN 89 A GLY 90 n 98 GLY 90 A ILE 91 n 99 ILE 91 A ASN 92 n 100 ASN 92 A ASN 93 n 101 ASN 93 A SER 94 n 102 SER 94 A SER 95 n 103 SER 95 A GLY 96 n 104 GLY 96 A MET 97 n 105 MET 97 A VAL 98 n 106 VAL 98 A ASP 99 n 107 ASP 99 A ALA 100 n 108 ALA 100 A ARG 101 n 109 ARG 101 A SER 102 n 110 SER 102 A ILE 103 n 111 ILE 103 A PRO 104 n 112 PRO 104 A VAL 105 n 113 VAL 105 A LEU 106 n 114 LEU 106 A ALA 107 n 115 ALA 107 A LYS 108 n 116 LYS 108 A TRP 109 n 117 TRP 109 A GLN 110 n 118 GLN 110 A ASN 111 n 119 ASN 111 A SER 112 n 120 SER 112 A TYR 113 n 121 TYR 113 A SER 114 n 122 SER 114 A ILE 115 n 123 ILE 115 A LYS 116 n 124 LYS 116 A VAL 117 n 125 VAL 117 A VAL 118 n 126 VAL 118 A LEU 119 n 127 LEU 119 A GLN 120 n 128 GLN 120 A GLU 121 n 129 GLU 121 A LEU 122 n 130 LEU 122 A ARG 123 n 131 ARG 123 A ARG 124 n 132 ARG 124 A LEU 125 n 133 LEU 125 A MET 126 n 134 MET 126 A MET 127 n 135 MET 127 A SER 128 n 136 SER 128 A LYS 129 n 137 LYS 129 A GLU 130 n 138 GLU 130 A ASN 131 n 139 ASN 131 A MET 132 n 140 MET 132 A LYS 133 n 141 LYS 133 A LEU 134 n 142 LEU 134 A PRO 135 n 143 PRO 135 A GLN 136 n 144 GLN 136 A PRO 137 n 145 PRO 137 A PRO 138 n 146 PRO 138 A GLU 139 n 147 GLU 139 A GLY 140 n 148 GLY 140 A GLN 141 n 149 GLN 141 A THR 142 n 150 THR 142 A TYR 143 n 151 TYR 143 A ASN 144 n 152 ASN 144 A ASN 145 n 153 ASN 145 A n 1 -7 B n 2 -6 B n 3 -5 B n 4 -4 B n 5 -3 B n 6 -2 B n 7 -1 B n 8 0 B n 9 1 B ALA 2 n 10 ALA 2 B GLY 3 n 11 GLY 3 B LEU 4 n 12 LEU 4 B PRO 5 n 13 PRO 5 B ARG 6 n 14 ARG 6 B ARG 7 n 15 ARG 7 B ILE 8 n 16 ILE 8 B ILE 9 n 17 ILE 9 B LYS 10 n 18 LYS 10 B GLU 11 n 19 GLU 11 B THR 12 n 20 THR 12 B GLN 13 n 21 GLN 13 B ARG 14 n 22 ARG 14 B LEU 15 n 23 LEU 15 B LEU 16 n 24 LEU 16 B ALA 17 n 25 ALA 17 B GLU 18 n 26 GLU 18 B PRO 19 n 27 PRO 19 B VAL 20 n 28 VAL 20 B PRO 21 n 29 PRO 21 B GLY 22 n 30 GLY 22 B ILE 23 n 31 ILE 23 B LYS 24 n 32 LYS 24 B ALA 25 n 33 ALA 25 B GLU 26 n 34 GLU 26 B PRO 27 n 35 PRO 27 B ASP 28 n 36 ASP 28 B GLU 29 n 37 GLU 29 B SER 30 n 38 SER 30 B ASN 31 n 39 ASN 31 B ALA 32 n 40 ALA 32 B ARG 33 n 41 ARG 33 B TYR 34 n 42 TYR 34 B PHE 35 n 43 PHE 35 B HIS 36 n 44 HIS 36 B VAL 37 n 45 VAL 37 B VAL 38 n 46 VAL 38 B ILE 39 n 47 ILE 39 B ALA 40 n 48 ALA 40 B GLY 41 n 49 GLY 41 B PRO 42 n 50 PRO 42 B GLN 43 n 51 GLN 43 B ASP 44 n 52 ASP 44 B SER 45 n 53 SER 45 B PRO 46 n 54 PRO 46 B PHE 47 n 55 PHE 47 B GLU 48 n 56 GLU 48 B GLY 49 n 57 GLY 49 B GLY 50 n 58 GLY 50 B THR 51 n 59 THR 51 B PHE 52 n 60 PHE 52 B LYS 53 n 61 LYS 53 B LEU 54 n 62 LEU 54 B GLU 55 n 63 GLU 55 B LEU 56 n 64 LEU 56 B PHE 57 n 65 PHE 57 B LEU 58 n 66 LEU 58 B PRO 59 n 67 PRO 59 B GLU 60 n 68 GLU 60 B GLU 61 n 69 GLU 61 B TYR 62 n 70 TYR 62 B PRO 63 n 71 PRO 63 B MET 64 n 72 MET 64 B ALA 65 n 73 ALA 65 B ALA 66 n 74 ALA 66 B PRO 67 n 75 PRO 67 B LYS 68 n 76 LYS 68 B VAL 69 n 77 VAL 69 B ARG 70 n 78 ARG 70 B PHE 71 n 79 PHE 71 B MET 72 n 80 MET 72 B THR 73 n 81 THR 73 B LYS 74 n 82 LYS 74 B ILE 75 n 83 ILE 75 B TYR 76 n 84 TYR 76 B HIS 77 n 85 HIS 77 B PRO 78 n 86 PRO 78 B ASN 79 n 87 ASN 79 B VAL 80 n 88 VAL 80 B ASP 81 n 89 ASP 81 B LYS 82 n 90 LYS 82 B LEU 83 n 91 LEU 83 B GLY 84 n 92 GLY 84 B ARG 85 n 93 ARG 85 B ILE 86 n 94 ILE 86 B CYS 87 n 95 CYS 87 B LEU 88 n 96 LEU 88 B ASP 89 n 97 ASP 89 B ILE 90 n 98 ILE 90 B LEU 91 n 99 LEU 91 B LYS 92 n 100 LYS 92 B ASP 93 n 101 ASP 93 B LYS 94 n 102 LYS 94 B TRP 95 n 103 TRP 95 B SER 96 n 104 SER 96 B PRO 97 n 105 PRO 97 B ALA 98 n 106 ALA 98 B LEU 99 n 107 LEU 99 B GLN 100 n 108 GLN 100 B ILE 101 n 109 ILE 101 B ARG 102 n 110 ARG 102 B THR 103 n 111 THR 103 B VAL 104 n 112 VAL 104 B LEU 105 n 113 LEU 105 B LEU 106 n 114 LEU 106 B SER 107 n 115 SER 107 B ILE 108 n 116 ILE 108 B GLN 109 n 117 GLN 109 B ALA 110 n 118 ALA 110 B LEU 111 n 119 LEU 111 B LEU 112 n 120 LEU 112 B SER 113 n 121 SER 113 B ALA 114 n 122 ALA 114 B PRO 115 n 123 PRO 115 B ASN 116 n 124 ASN 116 B PRO 117 n 125 PRO 117 B ASP 118 n 126 ASP 118 B ASP 119 n 127 ASP 119 B PRO 120 n 128 PRO 120 B LEU 121 n 129 LEU 121 B ALA 122 n 130 ALA 122 B ASN 123 n 131 ASN 123 B ASP 124 n 132 ASP 124 B VAL 125 n 133 VAL 125 B ALA 126 n 134 ALA 126 B GLU 127 n 135 GLU 127 B GLN 128 n 136 GLN 128 B TRP 129 n 137 TRP 129 B LYS 130 n 138 LYS 130 B THR 131 n 139 THR 131 B ASN 132 n 140 ASN 132 B GLU 133 n 141 GLU 133 B ALA 134 n 142 ALA 134 B GLN 135 n 143 GLN 135 B ALA 136 n 144 ALA 136 B ILE 137 n 145 ILE 137 B GLU 138 n 146 GLU 138 B THR 139 n 147 THR 139 B ALA 140 n 148 ALA 140 B ARG 141 n 149 ARG 141 B ALA 142 n 150 ALA 142 B TRP 143 n 151 TRP 143 B THR 144 n 152 THR 144 B ARG 145 n 153 ARG 145 B LEU 146 n 154 LEU 146 B TYR 147 n 155 TYR 147 B ALA 148 n 156 ALA 148 B MET 149 n 157 MET 149 B ASN 150 n 158 ASN 150 B n 159 151 B n 160 152 B author_and_software_defined_assembly PISA 2 dimeric 1720 -10 15180 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 34 A N GLY 42 A O THR 47 A O THR 55 A N ILE 50 A N ILE 58 A O TYR 63 A O TYR 71 A N GLU 68 A N GLU 76 A O SER 79 A O SER 87 B N GLU 26 B N GLU 34 B O HIS 36 B O HIS 44 B N PHE 35 B N PHE 43 B O LEU 56 B O LEU 64 B N GLU 55 B N GLU 63 B O ARG 70 B O ARG 78 1 A GLY -7 A GLY 1 1 Y 1 A PRO -6 A PRO 2 1 Y 1 A LEU -5 A LEU 3 1 Y 1 A GLY -4 A GLY 4 1 Y 1 A SER -3 A SER 5 1 Y 1 A PRO -2 A PRO 6 1 Y 1 A GLU -1 A GLU 7 1 Y 1 A PHE 0 A PHE 8 1 Y 1 A MET 1 A MET 9 1 Y 1 A ALA 2 A ALA 10 1 Y 1 A VAL 3 A VAL 11 1 Y 1 A SER 4 A SER 12 1 Y 1 A THR 5 A THR 13 1 Y 1 B GLY -7 B GLY 1 1 Y 1 B PRO -6 B PRO 2 1 Y 1 B LEU -5 B LEU 3 1 Y 1 B GLY -4 B GLY 4 1 Y 1 B SER -3 B SER 5 1 Y 1 B PRO -2 B PRO 6 1 Y 1 B GLU -1 B GLU 7 1 Y 1 B PHE 0 B PHE 8 1 Y 1 B MET 1 B MET 9 1 Y 1 B ASN 151 B ASN 159 1 Y 1 B ILE 152 B ILE 160 1 Y 1 B LYS 92 -132.51 -108.53 79.900 25.0600 9.150 0.1923 0.1590 0.1607 1.3500 24.271 3585 67463 5.3100 99.4400 0.8944 0.1400 1 1.350 MOLECULAR REPLACEMENT 17.3000 0.9000 1.1100 ML FLAT BULK SOLVENT MODEL 1.3500 24.271 212 2521 14 0 2295 0.013 2475 1.440 3377 0.095 359 0.008 450 13.111 973 0.2864 0.2441 1.3675 144 2320 2464 26 97.0000 0.2645 0.2164 1.3862 134 2441 2575 26 99.0000 0.2514 0.1945 1.4060 135 2402 2537 26 99.0000 0.2116 0.1734 1.4270 128 2406 2534 26 99.0000 0.2297 0.1655 1.4493 149 2418 2567 26 99.0000 0.1945 0.1524 1.4731 120 2445 2565 26 99.0000 0.1943 0.1496 1.4984 151 2398 2549 26 99.0000 0.1843 0.1452 1.5257 114 2436 2550 26 99.0000 0.1788 0.1361 1.5550 144 2413 2557 26 99.0000 0.2060 0.1318 1.5868 126 2445 2571 26 99.0000 0.1749 0.1261 1.6213 139 2425 2564 26 99.0000 0.1718 0.1218 1.6590 143 2441 2584 26 99.0000 0.1758 0.1233 1.7004 151 2442 2593 26 100.0000 0.1485 0.1241 1.7464 150 2412 2562 26 100.0000 0.1973 0.1260 1.7978 133 2463 2596 26 100.0000 0.1881 0.1313 1.8558 151 2472 2623 26 100.0000 0.1765 0.1307 1.9221 124 2451 2575 26 100.0000 0.1900 0.1403 1.9990 137 2463 2600 26 100.0000 0.1687 0.1372 2.0899 133 2475 2608 26 100.0000 0.2004 0.1515 2.2001 125 2491 2616 26 100.0000 0.1828 0.1530 2.3378 158 2475 2633 26 100.0000 0.2093 0.1643 2.5181 142 2478 2620 26 100.0000 0.2174 0.1803 2.7712 154 2500 2654 26 100.0000 0.2225 0.1827 3.1715 137 2525 2662 26 100.0000 0.2119 0.1671 3.9928 130 2560 2690 26 100.0000 0.1513 0.1682 24.271 133 2681 2814 26 100.0000 16.790 1.350 50.000 4ONM 67525 0.039 1.000 1 16.500 4.700 99.500 0.679 1.350 1.370 3291 1.012 1 4.000 98.600 0.595 1.370 1.400 3288 0.938 1 4.000 98.700 0.467 1.400 1.430 3331 0.925 1 4.000 98.800 0.391 1.430 1.450 3299 0.935 1 4.000 99.000 0.311 1.450 1.490 3348 1.000 1 4.000 99.200 0.276 1.490 1.520 3306 0.985 1 4.000 99.000 0.218 1.520 1.560 3348 1.007 1 4.000 99.400 0.175 1.560 1.600 3329 0.972 1 4.100 99.300 0.143 1.600 1.650 3333 1.092 1 4.100 99.600 0.127 1.650 1.700 3378 1.064 1 4.100 99.600 0.108 1.700 1.760 3350 1.034 1 4.100 99.700 0.086 1.760 1.830 3340 1.086 1 4.100 99.800 0.065 1.830 1.920 3392 1.022 1 4.100 99.900 0.056 1.920 2.020 3398 1.034 1 4.100 99.900 0.056 2.020 2.140 3405 1.047 1 4.100 99.900 0.060 2.140 2.310 3396 0.960 1 4.100 99.800 0.048 2.310 2.540 3419 0.983 1 4.700 99.900 0.047 2.540 2.910 3448 1.079 1 8.100 100.000 0.033 2.910 3.660 3482 0.926 1 8.000 100.000 0.024 3.660 50.000 3644 0.946 1 7.000 99.200 data reduction Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ DENZO package data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ SCALEPACK package refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.8.3_1479 data extraction PDB deposit@deposit.rcsb.org Dec. 10, 2013 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.14 Ubiquitin-conjugating enzyme E2 variant 2, Ubiquitin-conjugating enzyme E2 N (E.C.6.3.2.19) Crystal structure of human Mms2/Ubc13 - NSC697923 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N A PRO 10 A PRO 18 HELX_P A GLY 25 A GLY 33 1 1 16 A ASP 99 A ASP 107 HELX_P A SER 102 A SER 110 5 2 4 A ILE 103 A ILE 111 HELX_P A LYS 108 A LYS 116 1 3 6 A SER 114 A SER 122 HELX_P A MET 127 A MET 135 1 4 14 B PRO 5 B PRO 13 HELX_P B GLU 18 B GLU 26 1 5 14 B LEU 88 B LEU 96 HELX_P B LYS 92 B LYS 100 5 6 5 B GLN 100 B GLN 108 HELX_P B ALA 114 B ALA 122 1 7 15 B VAL 125 B VAL 133 HELX_P B ASN 132 B ASN 140 1 8 8 B ASN 132 B ASN 140 HELX_P B ALA 148 B ALA 156 1 9 17 covale 1.746 B CYS 87 B SG CYS 95 1_555 B N2F 201 D C5 N2F 1_555 LIGASE E2 ubiquitin conjugating enzyme, E1, E3, ubiquitin, covalent adduct, LIGASE A TYR 73 A TYR 81 1 A PRO 74 A PRO 82 1.02 B TYR 62 B TYR 70 1 B PRO 63 B PRO 71 6.67 UB2V2_HUMAN UNP 1 1 Q15819 MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSV RFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN UBE2N_HUMAN UNP 2 1 P61088 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI 1 145 4ONM 1 145 Q15819 A 1 9 153 1 152 4ONM 1 152 P61088 B 2 9 160 1 EXPRESSION TAG GLY -7 4ONM A Q15819 UNP 1 1 EXPRESSION TAG PRO -6 4ONM A Q15819 UNP 2 1 EXPRESSION TAG LEU -5 4ONM A Q15819 UNP 3 1 EXPRESSION TAG GLY -4 4ONM A Q15819 UNP 4 1 EXPRESSION TAG SER -3 4ONM A Q15819 UNP 5 1 EXPRESSION TAG PRO -2 4ONM A Q15819 UNP 6 1 EXPRESSION TAG GLU -1 4ONM A Q15819 UNP 7 1 EXPRESSION TAG PHE 0 4ONM A Q15819 UNP 8 2 EXPRESSION TAG GLY -7 4ONM B P61088 UNP 1 2 EXPRESSION TAG PRO -6 4ONM B P61088 UNP 2 2 EXPRESSION TAG LEU -5 4ONM B P61088 UNP 3 2 EXPRESSION TAG GLY -4 4ONM B P61088 UNP 4 2 EXPRESSION TAG SER -3 4ONM B P61088 UNP 5 2 EXPRESSION TAG PRO -2 4ONM B P61088 UNP 6 2 EXPRESSION TAG GLU -1 4ONM B P61088 UNP 7 2 EXPRESSION TAG PHE 0 4ONM B P61088 UNP 8 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 31 A VAL 39 A LEU 35 A LEU 43 A ARG 45 A ARG 53 A ILE 51 A ILE 59 A ILE 62 A ILE 70 A GLU 68 A GLU 76 A SER 79 A SER 87 A PHE 82 A PHE 90 B ILE 23 B ILE 31 B PRO 27 B PRO 35 B TYR 34 B TYR 42 B ALA 40 B ALA 48 B THR 51 B THR 59 B PHE 57 B PHE 65 B LYS 68 B LYS 76 B PHE 71 B PHE 79 BINDING SITE FOR RESIDUE GOL A 201 Software 8 BINDING SITE FOR RESIDUE N2F B 201 Software 11 A ASN 60 A ASN 68 8 4_455 A ILE 62 A ILE 70 8 4_455 A GLY 90 A GLY 98 8 1_555 A ILE 91 A ILE 99 8 1_555 A ASN 92 A ASN 100 8 1_555 A ASN 93 A ASN 101 8 1_555 A HOH 379 E HOH 8 4_455 A HOH 399 E HOH 8 1_555 B PRO 78 B PRO 86 11 1_555 B ASN 79 B ASN 87 11 1_555 B VAL 80 B VAL 88 11 1_555 B ASP 81 B ASP 89 11 1_555 B ARG 85 B ARG 93 11 1_555 B ILE 86 B ILE 94 11 1_555 B CYS 87 B CYS 95 11 1_555 B LEU 121 B LEU 129 11 1_555 B ALA 122 B ALA 130 11 1_555 B ASN 123 B ASN 131 11 1_555 B HOH 305 F HOH 11 1_555 19 P 21 21 21