0.019105 0.000000 0.000000 -0.000000 0.018599 0.000000 0.000000 -0.000000 0.011799 0.00000 0.00000 0.00000 Chen, S. Pojer, F. Heinis, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 52.343 53.766 84.751 C5 H11 N O2 S2 181.276 (4S)-4,5-disulfanyl-L-norvaline L-peptide linking C2 H3 O2 -1 59.044 ACETATE ION non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nat Chem 1755-4349 6 1009 1016 10.1038/nchem.2043 25343607 Dithiol amino acids can structurally shape and enhance the ligand-binding properties of polypeptides. 2014 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 PIXEL 2013-03-18 DECTRIS PILATUS 2M-F Si(111) SINGLE WAVELENGTH M x-ray 1 1 1.0 X06DA SLS 1 SYNCHROTRON SLS BEAMLINE X06DA 27586.420 Urokinase-type plasminogen activator 3.4.21.73 catalytic domain (UNP residues 179-423) C122A, N145Q 1 man polymer 1478.791 bicyclic peptide UK602 (bicyclic 1) 1 syn polymer 96.063 SULFATE ION 2 syn non-polymer 59.044 ACETATE ION 2 syn non-polymer 18.015 water 125 nat water U-plasminogen activator, uPA, Urokinase-type plasminogen activator long chain A, Urokinase-type plasminogen activator short chain A, Urokinase-type plasminogen activator chain B no no IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHT IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHT A polypeptide(L) no yes G(81S)LGRGCENHRCL(NH2) GXLGRGCENHRCLX B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human human sample PLAU 9606 Homo sapiens HEK293 9606 Homo sapiens plasmid pSecTagA 1 2.05 40.04 VAPOR DIFFUSION, HANGING DROP 4.5 21% PEG4000, 15% glycerol, 0.17 M ammonium sulfate, 0.1 M sodium acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K 291 software entity_src_gen struct_conn struct_ref_seq_dif struct_site repository Initial release Database references Refinement description Database references Derived calculations Source and taxonomy 1 0 2014-09-24 1 1 2014-11-05 1 2 2017-11-22 1 3 2021-06-02 _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_strain _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Human urokinase-type plasminogen activator uPA in complex with the two-disulfide bridge peptide UK504 Crystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK601 (bicyclic 1) Crystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK603 (bicyclic 1) Crystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK603 (bicyclic 2) Crystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK604 (bicyclic 2) Crystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK607 (bicyclic) RCSB Y RCSB 2014-02-12 REL REL SO4 SULFATE ION ACT ACETATE ION HOH water Inhibitor bicyclic peptide UK602 (bicyclic 1) Cyclic peptide SO4 1 3 SO4 SO4 301 A SO4 2 3 SO4 SO4 302 A ACT 1 4 ACT ACT 303 A ACT 2 4 ACT ACT 304 A HOH 2 5 HOH HOH 401 A HOH 3 5 HOH HOH 402 A HOH 4 5 HOH HOH 403 A HOH 5 5 HOH HOH 404 A HOH 6 5 HOH HOH 405 A HOH 8 5 HOH HOH 406 A HOH 9 5 HOH HOH 407 A HOH 10 5 HOH HOH 408 A HOH 11 5 HOH HOH 409 A HOH 12 5 HOH HOH 410 A HOH 13 5 HOH HOH 411 A HOH 14 5 HOH HOH 412 A HOH 15 5 HOH HOH 413 A HOH 17 5 HOH HOH 414 A HOH 18 5 HOH HOH 415 A HOH 19 5 HOH HOH 416 A HOH 20 5 HOH HOH 417 A HOH 21 5 HOH HOH 418 A HOH 22 5 HOH HOH 419 A HOH 23 5 HOH HOH 420 A HOH 24 5 HOH HOH 421 A HOH 25 5 HOH HOH 422 A HOH 26 5 HOH HOH 423 A HOH 27 5 HOH HOH 424 A HOH 28 5 HOH HOH 425 A HOH 29 5 HOH HOH 426 A HOH 30 5 HOH HOH 427 A HOH 31 5 HOH HOH 428 A HOH 32 5 HOH HOH 429 A HOH 33 5 HOH HOH 430 A HOH 34 5 HOH HOH 431 A HOH 35 5 HOH HOH 432 A HOH 36 5 HOH HOH 433 A HOH 37 5 HOH HOH 434 A HOH 38 5 HOH HOH 435 A HOH 41 5 HOH HOH 436 A HOH 43 5 HOH HOH 437 A HOH 44 5 HOH HOH 438 A HOH 45 5 HOH HOH 439 A HOH 46 5 HOH HOH 440 A HOH 47 5 HOH HOH 441 A HOH 48 5 HOH HOH 442 A HOH 51 5 HOH HOH 443 A HOH 53 5 HOH HOH 444 A HOH 54 5 HOH HOH 445 A HOH 57 5 HOH HOH 446 A HOH 58 5 HOH HOH 447 A HOH 59 5 HOH HOH 448 A HOH 61 5 HOH HOH 449 A HOH 62 5 HOH HOH 450 A HOH 63 5 HOH HOH 451 A HOH 65 5 HOH HOH 452 A HOH 66 5 HOH HOH 453 A HOH 67 5 HOH HOH 454 A HOH 69 5 HOH HOH 455 A HOH 71 5 HOH HOH 456 A HOH 72 5 HOH HOH 457 A HOH 74 5 HOH HOH 458 A HOH 75 5 HOH HOH 459 A HOH 76 5 HOH HOH 460 A HOH 77 5 HOH HOH 461 A HOH 79 5 HOH HOH 462 A HOH 82 5 HOH HOH 463 A HOH 83 5 HOH HOH 464 A HOH 84 5 HOH HOH 465 A HOH 88 5 HOH HOH 466 A HOH 89 5 HOH HOH 467 A HOH 91 5 HOH HOH 468 A HOH 94 5 HOH HOH 469 A HOH 96 5 HOH HOH 470 A HOH 97 5 HOH HOH 471 A HOH 98 5 HOH HOH 472 A HOH 99 5 HOH HOH 473 A HOH 100 5 HOH HOH 474 A HOH 101 5 HOH HOH 475 A HOH 103 5 HOH HOH 476 A HOH 105 5 HOH HOH 477 A HOH 109 5 HOH HOH 478 A HOH 113 5 HOH HOH 479 A HOH 114 5 HOH HOH 480 A HOH 115 5 HOH HOH 481 A HOH 116 5 HOH HOH 482 A HOH 120 5 HOH HOH 483 A HOH 124 5 HOH HOH 484 A HOH 125 5 HOH HOH 485 A HOH 130 5 HOH HOH 486 A HOH 132 5 HOH HOH 487 A HOH 133 5 HOH HOH 488 A HOH 135 5 HOH HOH 489 A HOH 136 5 HOH HOH 490 A HOH 137 5 HOH HOH 491 A HOH 138 5 HOH HOH 492 A HOH 139 5 HOH HOH 493 A HOH 140 5 HOH HOH 494 A HOH 141 5 HOH HOH 495 A HOH 142 5 HOH HOH 496 A HOH 143 5 HOH HOH 497 A HOH 144 5 HOH HOH 498 A HOH 145 5 HOH HOH 499 A HOH 146 5 HOH HOH 500 A HOH 147 5 HOH HOH 501 A HOH 148 5 HOH HOH 502 A HOH 149 5 HOH HOH 503 A HOH 150 5 HOH HOH 504 A HOH 151 5 HOH HOH 505 A HOH 152 5 HOH HOH 506 A HOH 153 5 HOH HOH 507 A HOH 154 5 HOH HOH 508 A HOH 155 5 HOH HOH 509 A HOH 156 5 HOH HOH 510 A HOH 157 5 HOH HOH 511 A HOH 159 5 HOH HOH 512 A HOH 160 5 HOH HOH 513 A HOH 161 5 HOH HOH 514 A HOH 162 5 HOH HOH 515 A HOH 163 5 HOH HOH 516 A HOH 164 5 HOH HOH 517 A HOH 7 5 HOH HOH 101 B HOH 39 5 HOH HOH 102 B HOH 40 5 HOH HOH 103 B HOH 50 5 HOH HOH 104 B HOH 52 5 HOH HOH 105 B HOH 78 5 HOH HOH 106 B HOH 85 5 HOH HOH 107 B HOH 90 5 HOH HOH 108 B ILE 16 n 1 ILE 16 A ILE 17 n 2 ILE 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A GLU 20 n 5 GLU 20 A PHE 21 n 6 PHE 21 A THR 22 n 7 THR 22 A THR 23 n 8 THR 23 A ILE 24 n 9 ILE 24 A GLU 25 n 10 GLU 25 A ASN 26 n 11 ASN 26 A GLN 27 n 12 GLN 27 A PRO 28 n 13 PRO 28 A TRP 29 n 14 TRP 29 A PHE 30 n 15 PHE 30 A ALA 31 n 16 ALA 31 A ALA 32 n 17 ALA 32 A ILE 33 n 18 ILE 33 A TYR 34 n 19 TYR 34 A ARG 35 n 20 ARG 35 A ARG 36 n 21 ARG 36 A HIS 37 n 22 HIS 37 A ARG 37 n 23 A ARG 37 A GLY 37 n 24 B GLY 37 A GLY 37 n 25 C GLY 37 A SER 37 n 26 D SER 37 A VAL 38 n 27 VAL 38 A THR 39 n 28 THR 39 A TYR 40 n 29 TYR 40 A VAL 41 n 30 VAL 41 A CYS 42 n 31 CYS 42 A GLY 43 n 32 GLY 43 A GLY 44 n 33 GLY 44 A SER 45 n 34 SER 45 A LEU 46 n 35 LEU 46 A ILE 47 n 36 ILE 47 A SER 48 n 37 SER 48 A PRO 49 n 38 PRO 49 A CYS 50 n 39 CYS 50 A TRP 51 n 40 TRP 51 A VAL 52 n 41 VAL 52 A ILE 53 n 42 ILE 53 A SER 54 n 43 SER 54 A ALA 55 n 44 ALA 55 A THR 56 n 45 THR 56 A HIS 57 n 46 HIS 57 A CYS 58 n 47 CYS 58 A PHE 59 n 48 PHE 59 A ILE 60 n 49 ILE 60 A ASP 60 n 50 A ASP 60 A TYR 60 n 51 B TYR 60 A PRO 60 n 52 C PRO 60 A LYS 61 n 53 LYS 61 A LYS 62 n 54 LYS 62 A GLU 62 n 55 A GLU 62 A ASP 63 n 56 ASP 63 A TYR 64 n 57 TYR 64 A ILE 65 n 58 ILE 65 A VAL 66 n 59 VAL 66 A TYR 67 n 60 TYR 67 A LEU 68 n 61 LEU 68 A GLY 69 n 62 GLY 69 A ARG 70 n 63 ARG 70 A SER 71 n 64 SER 71 A ARG 72 n 65 ARG 72 A LEU 73 n 66 LEU 73 A ASN 74 n 67 ASN 74 A SER 75 n 68 SER 75 A ASN 76 n 69 ASN 76 A THR 77 n 70 THR 77 A GLN 78 n 71 GLN 78 A GLY 79 n 72 GLY 79 A GLU 80 n 73 GLU 80 A MET 81 n 74 MET 81 A LYS 82 n 75 LYS 82 A PHE 83 n 76 PHE 83 A GLU 84 n 77 GLU 84 A VAL 85 n 78 VAL 85 A GLU 86 n 79 GLU 86 A ASN 87 n 80 ASN 87 A LEU 88 n 81 LEU 88 A ILE 89 n 82 ILE 89 A LEU 90 n 83 LEU 90 A HIS 91 n 84 HIS 91 A LYS 92 n 85 LYS 92 A ASP 93 n 86 ASP 93 A TYR 94 n 87 TYR 94 A SER 95 n 88 SER 95 A ALA 96 n 89 ALA 96 A ASP 97 n 90 ASP 97 A THR 97 n 91 A THR 97 A LEU 97 n 92 B LEU 97 A ALA 98 n 93 ALA 98 A HIS 99 n 94 HIS 99 A HIS 100 n 95 HIS 100 A ASN 101 n 96 ASN 101 A ASP 102 n 97 ASP 102 A ILE 103 n 98 ILE 103 A ALA 104 n 99 ALA 104 A LEU 105 n 100 LEU 105 A LEU 106 n 101 LEU 106 A LYS 107 n 102 LYS 107 A ILE 108 n 103 ILE 108 A ARG 109 n 104 ARG 109 A SER 110 n 105 SER 110 A LYS 110 n 106 A LYS 110 A GLU 110 n 107 B GLU 110 A GLY 110 n 108 C GLY 110 A ARG 110 n 109 D ARG 110 A CYS 111 n 110 CYS 111 A ALA 112 n 111 ALA 112 A GLN 113 n 112 GLN 113 A PRO 114 n 113 PRO 114 A SER 115 n 114 SER 115 A ARG 116 n 115 ARG 116 A THR 117 n 116 THR 117 A ILE 118 n 117 ILE 118 A GLN 119 n 118 GLN 119 A THR 120 n 119 THR 120 A ILE 121 n 120 ILE 121 A ALA 122 n 121 ALA 122 A LEU 123 n 122 LEU 123 A PRO 124 n 123 PRO 124 A SER 125 n 124 SER 125 A MET 126 n 125 MET 126 A TYR 127 n 126 TYR 127 A ASN 128 n 127 ASN 128 A ASP 129 n 128 ASP 129 A PRO 130 n 129 PRO 130 A GLN 131 n 130 GLN 131 A PHE 132 n 131 PHE 132 A GLY 133 n 132 GLY 133 A THR 134 n 133 THR 134 A SER 135 n 134 SER 135 A CYS 136 n 135 CYS 136 A GLU 137 n 136 GLU 137 A ILE 138 n 137 ILE 138 A THR 139 n 138 THR 139 A GLY 140 n 139 GLY 140 A PHE 141 n 140 PHE 141 A GLY 142 n 141 GLY 142 A LYS 143 n 142 LYS 143 A GLU 144 n 143 GLU 144 A GLN 145 n 144 GLN 145 A SER 146 n 145 SER 146 A THR 147 n 146 THR 147 A ASP 148 n 147 ASP 148 A TYR 149 n 148 TYR 149 A LEU 150 n 149 LEU 150 A TYR 151 n 150 TYR 151 A PRO 152 n 151 PRO 152 A GLU 153 n 152 GLU 153 A GLN 154 n 153 GLN 154 A LEU 155 n 154 LEU 155 A LYS 156 n 155 LYS 156 A MET 157 n 156 MET 157 A THR 158 n 157 THR 158 A VAL 159 n 158 VAL 159 A VAL 160 n 159 VAL 160 A LYS 161 n 160 LYS 161 A LEU 162 n 161 LEU 162 A ILE 163 n 162 ILE 163 A SER 164 n 163 SER 164 A HIS 165 n 164 HIS 165 A ARG 166 n 165 ARG 166 A GLU 167 n 166 GLU 167 A CYS 168 n 167 CYS 168 A GLN 169 n 168 GLN 169 A GLN 170 n 169 GLN 170 A PRO 170 n 170 A PRO 170 A HIS 170 n 171 B HIS 170 A TYR 171 n 172 TYR 171 A TYR 172 n 173 TYR 172 A GLY 173 n 174 GLY 173 A SER 174 n 175 SER 174 A GLU 175 n 176 GLU 175 A VAL 176 n 177 VAL 176 A THR 177 n 178 THR 177 A THR 178 n 179 THR 178 A LYS 179 n 180 LYS 179 A MET 180 n 181 MET 180 A LEU 181 n 182 LEU 181 A CYS 182 n 183 CYS 182 A ALA 183 n 184 ALA 183 A ALA 184 n 185 ALA 184 A ASP 185 n 186 ASP 185 A PRO 185 n 187 A PRO 185 A GLN 185 n 188 B GLN 185 A TRP 186 n 189 TRP 186 A LYS 187 n 190 LYS 187 A THR 188 n 191 THR 188 A ASP 189 n 192 ASP 189 A SER 190 n 193 SER 190 A CYS 191 n 194 CYS 191 A GLN 192 n 195 GLN 192 A GLY 193 n 196 GLY 193 A ASP 194 n 197 ASP 194 A SER 195 n 198 SER 195 A GLY 196 n 199 GLY 196 A GLY 197 n 200 GLY 197 A PRO 198 n 201 PRO 198 A LEU 199 n 202 LEU 199 A VAL 200 n 203 VAL 200 A CYS 201 n 204 CYS 201 A SER 202 n 205 SER 202 A LEU 203 n 206 LEU 203 A GLN 204 n 207 GLN 204 A GLY 205 n 208 GLY 205 A ARG 206 n 209 ARG 206 A MET 207 n 210 MET 207 A THR 208 n 211 THR 208 A LEU 209 n 212 LEU 209 A THR 210 n 213 THR 210 A GLY 211 n 214 GLY 211 A ILE 212 n 215 ILE 212 A VAL 213 n 216 VAL 213 A SER 214 n 217 SER 214 A TRP 215 n 218 TRP 215 A GLY 216 n 219 GLY 216 A ARG 217 n 220 ARG 217 A GLY 218 n 221 GLY 218 A CYS 220 n 222 CYS 220 A ALA 221 n 223 ALA 221 A LEU 222 n 224 LEU 222 A LYS 223 n 225 LYS 223 A ASP 223 n 226 A ASP 223 A LYS 224 n 227 LYS 224 A PRO 225 n 228 PRO 225 A GLY 226 n 229 GLY 226 A VAL 227 n 230 VAL 227 A TYR 228 n 231 TYR 228 A THR 229 n 232 THR 229 A ARG 230 n 233 ARG 230 A VAL 231 n 234 VAL 231 A SER 232 n 235 SER 232 A HIS 233 n 236 HIS 233 A PHE 234 n 237 PHE 234 A LEU 235 n 238 LEU 235 A PRO 236 n 239 PRO 236 A TRP 237 n 240 TRP 237 A ILE 238 n 241 ILE 238 A ARG 239 n 242 ARG 239 A SER 240 n 243 SER 240 A HIS 241 n 244 HIS 241 A THR 242 n 245 THR 242 A GLY 1 n 1 GLY 1 B B1S 2 n 2 81S 2 B LEU 3 n 3 LEU 3 B GLY 4 n 4 GLY 4 B ARG 5 n 5 ARG 5 B GLY 6 n 6 GLY 6 B CYS 7 n 7 CYS 7 B GLU 8 n 8 GLU 8 B ASN 9 n 9 ASN 9 B HIS 10 n 10 HIS 10 B ARG 11 n 11 ARG 11 B CYS 12 n 12 CYS 12 B LEU 13 n 13 LEU 13 B NH2 14 n 14 NH2 14 B author_and_software_defined_assembly PISA 2 dimeric 2110 -29 11470 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 20 A N GLU 5 A O MET 157 A O MET 156 A N ILE 163 A N ILE 162 A O CYS 182 A O CYS 183 A N LEU 181 A N LEU 182 A O TYR 228 A O TYR 231 A O VAL 227 A O VAL 230 A N TRP 215 A N TRP 218 A O ARG 206 A O ARG 209 A N LEU 203 A N LEU 206 A O VAL 200 A O VAL 203 A N GLU 137 A N GLU 136 A N CYS 136 A N CYS 135 A O VAL 160 A O VAL 159 A N ILE 33 A N ILE 18 A O VAL 41 A O VAL 30 A N SER 45 A N SER 34 A O ILE 53 A O ILE 42 A N VAL 52 A N VAL 41 A O LEU 106 A O LEU 101 A O LEU 105 A O LEU 100 A N ILE 89 A N ILE 82 A O PHE 83 A O PHE 76 A N VAL 66 A N VAL 59 A O ILE 65 A O ILE 58 A N TYR 34 A N TYR 19 A N SER 95 A N SER 88 A O HIS 100 A O HIS 95 1 A N ILE 16 A N ILE 1 1 Y 1 A GLN 27 -140.42 52.87 1 A VAL 41 -105.07 -64.72 1 A TYR 171 -89.23 -103.22 1 A SER 214 -123.33 -57.94 24.760 0.15 -0.00 -0.00 0.17 0.00 -0.32 0.959 0.950 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.20734 0.17953 0.18098 0.18098 1.79 45.40 1152 22952 21724 5.0 99.32 2.726 0.084 RANDOM 1 THROUGHOUT 0 0 MOLECULAR REPLACEMENT 0.135 0.120 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 1.79 45.40 125 2175 18 0 2032 0.007 0.019 2117 0.003 0.020 1972 1.291 1.956 2871 0.725 3.005 4533 6.002 5.000 260 32.643 23.043 92 15.136 15.000 355 12.848 15.000 15 0.076 0.200 308 0.005 0.021 2381 0.001 0.020 498 0.308 0.283 1.841 80 1452 20 92.34 16.703 1.79 45.4 4OS2 22952 22952 0 0 0.119 1 9.7 8.4 100 0.491 1.79 1.89 3.9 3168 1 7.9 96.3 phasing PHASES refinement REFMAC 5.7.0029 data reduction XDS data scaling SCALA Urokinase-type plasminogen activator (E.C.3.4.21.73), bicyclic peptide UK602 (bicyclic 1) Crystal structure of urokinase-type plasminogen activator (uPA) complexed with bicyclic peptide UK602 (bicyclic 1) 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N 5 N N 5 N N A THR 23 A THR 8 HELX_P A GLN 27 A GLN 12 5 1 5 A ALA 55 A ALA 44 HELX_P A PHE 59 A PHE 48 5 2 5 A LYS 61 A LYS 53 HELX_P A GLU 62 A GLU 55 5 3 3 A A SER 164 A SER 163 HELX_P A GLN 169 A GLN 168 1 4 6 A TYR 172 A TYR 173 HELX_P A VAL 176 A VAL 177 5 5 5 A PHE 234 A PHE 237 HELX_P A THR 242 A THR 245 1 6 9 disulf 2.041 A CYS 42 A SG CYS 31 1_555 A CYS 58 A SG CYS 47 1_555 disulf 2.030 A CYS 50 A SG CYS 39 1_555 A CYS 111 A SG CYS 110 1_555 disulf 2.031 A CYS 136 A SG CYS 135 1_555 A CYS 201 A SG CYS 204 1_555 disulf 2.038 A CYS 168 A SG CYS 167 1_555 A CYS 182 A SG CYS 183 1_555 disulf 2.049 A CYS 191 A SG CYS 194 1_555 A CYS 220 A SG CYS 222 1_555 covale 1.331 both sing B GLY 1 B C GLY 1 1_555 B 81S 2 B N 81S 2 1_555 covale 1.338 both sing B 81S 2 B C 81S 2 1_555 B LEU 3 B N LEU 3 1_555 covale 2.041 one sing B 81S 2 B SE 81S 2 1_555 B CYS 7 B SG CYS 7 1_555 covale 2.035 one sing B 81S 2 B SD2 81S 2 1_555 B CYS 12 B SG CYS 12 1_555 covale 1.366 both sing B LEU 13 B C LEU 13 1_555 B NH2 14 B N NH2 14 1_555 HYDROLASE/HYDROLASE INHIBITOR bicyclic peptide, inhibitor, protease, disulfide bridges, cyclization, extracellular, HYDROLASE-HYDROLASE INHIBITOR complex UROK_HUMAN UNP 1 179 P00749 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHT 4OS2 PDB 2 1 4OS2 G(81S)LGRGCENHRCL(NH2) 179 423 4OS2 16 242 P00749 A 1 1 245 1 14 4OS2 1 14 4OS2 B 2 1 14 1 CYS engineered mutation ALA 122 4OS2 A P00749 UNP 299 121 1 ASN engineered mutation GLN 145 4OS2 A P00749 UNP 322 144 8 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLU 20 A GLU 5 A PHE 21 A PHE 6 A LYS 156 A LYS 155 A ILE 163 A ILE 162 A MET 180 A MET 181 A ALA 184 A ALA 185 A GLY 226 A GLY 229 A ARG 230 A ARG 233 A ARG 206 A ARG 209 A TRP 215 A TRP 218 A PRO 198 A PRO 201 A LEU 203 A LEU 206 A SER 135 A SER 134 A GLY 140 A GLY 139 A LYS 156 A LYS 155 A ILE 163 A ILE 162 A PHE 30 A PHE 15 A ARG 36 A ARG 21 A VAL 38 A VAL 27 A SER 48 A SER 37 A TRP 51 A TRP 40 A SER 54 A SER 43 A ALA 104 A ALA 99 A ARG 109 A ARG 104 A MET 81 A MET 74 A LEU 90 A LEU 83 A TYR 64 A TYR 57 A LEU 68 A LEU 61 A PHE 30 A PHE 15 A ARG 36 A ARG 21 A SER 95 A SER 88 A ALA 96 A ALA 89 A HIS 99 A HIS 94 A HIS 100 A HIS 95 BINDING SITE FOR RESIDUE SO4 A 301 A SO4 301 Software 6 BINDING SITE FOR RESIDUE SO4 A 302 A SO4 302 Software 3 BINDING SITE FOR RESIDUE ACT A 303 A ACT 303 Software 3 BINDING SITE FOR RESIDUE ACT A 304 A ACT 304 Software 5 BINDING SITE FOR CHAIN B OF BICYCLIC PEPTIDE UK602 (BICYCLIC 1) Software 34 A LYS 61 A LYS 53 6 4_475 A HIS 100 A HIS 95 6 1_555 A THR 177 A THR 178 6 1_555 A LYS 179 A LYS 180 6 1_555 A MET 180 A MET 181 6 1_555 A HOH 511 G HOH 6 1_555 A ARG 35 A ARG 20 3 1_555 A HIS 37 A HIS 22 3 1_555 A ARG 37 A ARG 23 A 3 1_555 A THR 23 A THR 8 3 1_555 A SER 71 A SER 64 3 1_555 A ARG 72 A ARG 65 3 1_555 A PHE 132 A PHE 131 5 1_555 A SER 164 A SER 163 5 1_555 A HIS 165 A HIS 164 5 1_555 A ARG 166 A ARG 165 5 1_555 A ARG 206 A ARG 209 5 4_465 A GLU 20 A GLU 5 34 3_755 A PHE 21 A PHE 6 34 3_755 A THR 23 A THR 8 34 3_755 A ARG 35 A ARG 20 34 1_555 A VAL 41 A VAL 30 34 1_555 A HIS 57 A HIS 46 34 1_555 A CYS 58 A CYS 47 34 1_555 A ASP 60 A ASP 50 A 34 1_555 A TYR 60 A TYR 51 B 34 1_555 A TYR 64 A TYR 57 34 1_555 A HIS 99 A HIS 94 34 1_555 A GLN 154 A GLN 153 34 3_755 A SER 174 A SER 175 34 4_575 A ASP 189 A ASP 192 34 1_555 A SER 190 A SER 193 34 1_555 A CYS 191 A CYS 194 34 1_555 A GLN 192 A GLN 195 34 1_555 A GLY 193 A GLY 196 34 1_555 A SER 195 A SER 198 34 1_555 A SER 214 A SER 217 34 1_555 A TRP 215 A TRP 218 34 1_555 A GLY 218 A GLY 221 34 1_555 A GLY 226 A GLY 229 34 1_555 A HOH 414 G HOH 34 1_555 A HOH 429 G HOH 34 1_555 A HOH 449 G HOH 34 1_555 A HOH 502 G HOH 34 3_755 B HOH 101 H HOH 34 1_555 B HOH 102 H HOH 34 1_555 B HOH 103 H HOH 34 1_555 B HOH 104 H HOH 34 1_555 B HOH 105 H HOH 34 1_555 B HOH 107 H HOH 34 1_555 B HOH 108 H HOH 34 1_555 19 P 21 21 21