0.021030 0.000000 0.007123 0.000000 0.030469 0.000000 0.000000 0.000000 0.020049 0.00000 0.00000 0.00000 Kondo, J. Francois, B. Russell, R.J.M. Murray, J.B. Westhof, E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 108.710 90.000 47.550 32.820 52.660 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C22 H43 N5 O13 585.603 (2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide AMIKACIN non-polymer C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 R C N 39 R C N 40 S C N 41 S C N 42 R C N 43 N C N 44 N O N 45 N O N 46 N O N 47 N N N 48 R C N 49 N N N 50 N C N 51 S C N 52 N N N 53 R C N 54 S C N 55 N O N 56 S C N 57 N O N 58 S C N 59 R C N 60 N O N 61 S C N 62 N N N 63 S C N 64 N O N 65 R C N 66 N O N 67 N C N 68 N O N 69 N O N 70 N O N 71 N N N 72 N C N 73 N O N 74 S C N 75 N C N 76 N C N 77 N O N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N O N 122 N P N 123 N O N 124 N O N 125 N O N 126 N C N 127 R C N 128 N O N 129 S C N 130 N O N 131 R C N 132 N O N 133 R C N 134 N N N 135 N C N 136 N O N 137 N N N 138 N C N 139 N N N 140 N C N 141 N C N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N O N 157 N P N 158 N O N 159 N O N 160 N O N 161 N C N 162 R C N 163 N O N 164 S C N 165 N O N 166 R C N 167 N O N 168 R C Y 169 N N Y 170 N C Y 171 N N Y 172 N C N 173 N C N 174 N O N 175 N N N 176 N C N 177 N N N 178 N N Y 179 N C N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N O N 195 N H N 196 N H N 197 N O N 198 N P N 199 N O N 200 N O N 201 N O N 202 N C N 203 R C N 204 N O N 205 S C N 206 N O N 207 R C N 208 N O N 209 R C N 210 N N N 211 N C N 212 N O N 213 N N N 214 N C N 215 N O N 216 N C N 217 N C N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N doub N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing Y 185 N sing Y 186 N sing Y 187 N doub N 188 N sing Y 189 N sing N 190 N sing Y 191 N doub N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N doub N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N doub N 236 N sing N 237 N sing FR Biochimie BICMBE 0466 0300-9084 88 1027 1031 10.1016/j.biochi.2006.05.017 16806634 Crystal structure of the bacterial ribosomal decoding site complexed with amikacin containing the gamma-amino-alpha-hydroxybutyryl (haba) group. 2006 10.2210/pdb4p20/pdb pdb_00004p20 100 1 CCD 2004-06-26 ADSC QUANTUM 4 SINGLE WAVELENGTH x-ray 1 0.9357 1.0 ID14-4 ESRF 0.9357 SYNCHROTRON ESRF BEAMLINE ID14-4 7355.409 5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' 2 syn polymer 585.603 (2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide 2 syn non-polymer 18.015 water 75 nat water no no UUGCGUCACACCGGUGAAGUCGC UUGCGUCACACCGGUGAAGUCGC A,B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n 1 2.65 53.51 VAPOR DIFFUSION 6.4 MPF, Na Cacodylate, NaCl, KCl 310 3.829 1 19 A 2 B 44 1.850 A_G2:C44_B 1 -7.384 -0.192 0.383 -0.153 -1.454 1 19 A 3 B 43 -1.760 A_C3:G43_B 2 -12.569 0.090 0.267 -0.025 3.609 1 19 A 4 B 42 1.583 A_G4:C42_B 3 -5.903 -0.317 0.040 -0.010 10.070 A 5 B 41 -27.554 A_U5:U41_B 4 -9.261 -2.758 -1.270 -1.071 -5.086 1 19 A 6 B 40 -1.470 A_C6:G40_B 5 -0.342 0.373 -0.196 -0.208 7.101 1 19 A 8 B 37 0.320 A_C8:G37_B 6 -20.838 0.214 0.011 -0.132 1.076 1 20 A 9 B 36 1.939 A_A9:U36_B 7 -18.388 0.124 -0.161 -0.080 6.331 1 19 A 10 B 35 -0.089 A_C10:G35_B 8 -18.283 0.296 0.056 -0.190 -2.146 1 19 A 11 B 34 2.117 A_C11:G34_B 9 -4.110 0.053 0.442 -0.122 -0.590 1 19 A 12 B 33 -0.388 A_G12:C33_B 10 -9.055 -0.076 0.319 -0.109 -5.961 1 19 A 13 B 32 2.168 A_G13:C32_B 11 -17.569 -0.049 -0.107 -0.018 4.930 1 20 A 14 B 31 0.705 A_U14:A31_B 12 -11.392 -0.015 -0.137 -0.131 -15.766 1 19 A 15 B 30 0.003 A_G15:C30_B 13 -25.962 -0.335 -0.052 -0.046 4.399 1 19 A 18 B 28 -2.127 A_G18:C28_B 14 1.924 -0.242 -0.233 -0.229 1.451 A 19 B 27 -28.908 A_U19:U27_B 15 -6.581 2.017 -0.475 -1.312 4.101 1 19 A 20 B 26 -0.239 A_C20:G26_B 16 -0.051 0.325 -0.129 -0.251 -2.854 1 19 A 21 B 25 3.969 A_G21:C25_B 17 -2.231 -0.152 0.226 -0.052 -0.635 1 19 A 22 B 24 6.447 A_C22:G24_B 18 -3.250 0.365 0.434 -0.076 3.313 34.126 A A 2 3 3.396 B B 44 43 3.416 1.992 -0.342 -1.866 AA_G2C3:G43C44_BB 1 -0.982 1.675 34.056 -3.506 0.422 2.461 28.287 A A 3 4 13.136 B B 43 42 2.969 6.366 -0.301 -1.947 AA_C3G4:C42G43_BB 2 0.498 -1.027 27.571 -5.226 0.713 2.314 20.150 A A 4 5 10.661 B B 42 41 3.212 3.628 -0.712 -2.139 AA_G4U5:U41C42_BB 3 7.205 -21.176 18.480 -7.584 4.954 3.545 47.141 A A 5 6 5.578 B B 41 40 4.004 4.448 2.036 -2.448 AA_U5C6:G40U41_BB 4 -5.027 6.305 46.687 -3.483 -3.023 5.592 79.009 A A 6 8 11.286 B B 40 37 6.352 14.274 1.314 -3.303 AA_C6C8:G37G40_BB 5 -10.294 8.139 77.339 -3.317 -1.553 2.283 34.127 A A 8 9 27.653 B B 37 36 3.340 15.652 -0.071 -1.563 AA_C8A9:U36G37_BB 6 1.036 -1.831 30.404 -4.930 0.271 2.925 31.539 A A 9 10 5.743 B B 36 35 3.109 3.116 0.670 -1.825 AA_A9C10:G35U36_BB 7 0.305 -0.563 31.387 -3.894 -1.180 3.272 31.260 A A 10 11 7.365 B B 35 34 3.496 3.943 -0.628 -2.050 AA_C10C11:G34G35_BB 8 -4.864 9.086 30.642 -4.584 0.202 2.630 31.215 A A 11 12 13.191 B B 34 33 3.072 7.040 -0.125 -1.656 AA_C11G12:C33G34_BB 9 0.295 -0.552 30.429 -4.259 0.281 2.710 34.694 A A 12 13 16.297 B B 33 32 3.236 9.563 0.391 -1.598 AA_G12G13:C32C33_BB 10 5.249 -8.945 32.985 -4.049 0.096 3.194 29.168 A A 13 14 -3.543 B B 32 31 3.108 -1.783 -0.163 -1.509 AA_G13U14:A31C32_BB 11 -0.267 0.531 29.114 -2.622 0.267 2.259 40.363 A A 14 15 33.729 B B 31 30 3.559 22.078 0.390 -1.453 AA_U14G15:C30A31_BB 12 2.059 -3.146 33.941 -4.531 -0.338 5.336 77.633 A A 15 18 11.823 B B 30 28 6.085 14.748 -1.554 -3.469 AA_G15G18:C28C30_BB 13 5.801 -4.650 76.250 -3.506 1.530 3.620 45.371 A A 18 19 -2.495 B B 28 27 3.553 -1.924 -1.645 -2.417 AA_G18U19:U27C28_BB 14 0.779 -1.010 45.326 -2.947 2.209 2.177 24.053 A A 19 20 20.536 B B 27 26 3.293 8.383 0.674 -2.647 AA_U19C20:G26U27_BB 15 -0.172 0.421 22.565 -8.680 -1.665 2.869 28.502 A A 20 21 11.269 B B 26 25 3.288 5.512 0.737 -1.668 AA_C20G21:C25G26_BB 16 -1.505 3.078 27.935 -4.585 -1.823 3.194 34.640 A A 21 22 -1.019 B B 25 24 3.149 -0.607 0.374 -2.243 AA_G21C22:G24C25_BB 17 0.826 -1.387 34.625 -3.676 -0.505 citation pdbx_database_status pdbx_entity_src_syn pdbx_struct_assembly pdbx_struct_oper_list software struct_keywords chem_comp chem_comp_atom chem_comp_bond database_2 entity pdbx_entity_nonpoly refine_hist repository Initial release Database references Database references Derived calculations Other Refinement description Source and taxonomy Structure summary Data collection Database references Derived calculations Refinement description Structure summary 1 0 2014-05-07 1 1 2015-01-07 1 2 2017-11-22 1 3 2023-12-27 _citation.journal_id_CSD _pdbx_database_status.pdb_format_compatible _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_struct_assembly.oligomeric_details _pdbx_struct_oper_list.symmetry_operation _struct_keywords.text _chem_comp.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.pdbx_description _pdbx_entity_nonpoly.name _refine_hist.number_atoms_total _refine_hist.pdbx_number_atoms_nucleic_acid _refine_hist.pdbx_number_atoms_protein 2014-05-07 SPRSDE N RCSB Y RCSB 2014-02-28 REL REL 1 B O HOH 223 5.86 AKN (2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide HOH water 32630 synthetic construct sample 1 23 AMI 52 2 AKN AKN 101 A AMI 51 2 AKN AKN 101 B HOH 153 3 HOH HOH 201 A HOH 118 3 HOH HOH 202 A HOH 149 3 HOH HOH 203 A HOH 131 3 HOH HOH 204 A HOH 162 3 HOH HOH 205 A HOH 154 3 HOH HOH 206 A HOH 175 3 HOH HOH 207 A HOH 155 3 HOH HOH 208 A HOH 174 3 HOH HOH 209 A HOH 166 3 HOH HOH 210 A HOH 168 3 HOH HOH 211 A HOH 102 3 HOH HOH 212 A HOH 108 3 HOH HOH 213 A HOH 110 3 HOH HOH 214 A HOH 112 3 HOH HOH 215 A HOH 113 3 HOH HOH 216 A HOH 114 3 HOH HOH 217 A HOH 115 3 HOH HOH 218 A HOH 121 3 HOH HOH 219 A HOH 122 3 HOH HOH 220 A HOH 123 3 HOH HOH 221 A HOH 124 3 HOH HOH 222 A HOH 125 3 HOH HOH 223 A HOH 128 3 HOH HOH 224 A HOH 129 3 HOH HOH 225 A HOH 130 3 HOH HOH 226 A HOH 135 3 HOH HOH 227 A HOH 136 3 HOH HOH 228 A HOH 139 3 HOH HOH 229 A HOH 143 3 HOH HOH 230 A HOH 158 3 HOH HOH 231 A HOH 160 3 HOH HOH 232 A HOH 171 3 HOH HOH 233 A HOH 172 3 HOH HOH 234 A HOH 176 3 HOH HOH 235 A HOH 104 3 HOH HOH 201 B HOH 159 3 HOH HOH 202 B HOH 148 3 HOH HOH 203 B HOH 134 3 HOH HOH 204 B HOH 120 3 HOH HOH 205 B HOH 150 3 HOH HOH 206 B HOH 117 3 HOH HOH 207 B HOH 127 3 HOH HOH 208 B HOH 107 3 HOH HOH 209 B HOH 142 3 HOH HOH 210 B HOH 152 3 HOH HOH 211 B HOH 119 3 HOH HOH 212 B HOH 133 3 HOH HOH 213 B HOH 170 3 HOH HOH 214 B HOH 161 3 HOH HOH 215 B HOH 145 3 HOH HOH 216 B HOH 169 3 HOH HOH 217 B HOH 101 3 HOH HOH 218 B HOH 103 3 HOH HOH 219 B HOH 105 3 HOH HOH 220 B HOH 106 3 HOH HOH 221 B HOH 109 3 HOH HOH 222 B HOH 116 3 HOH HOH 223 B HOH 126 3 HOH HOH 224 B HOH 132 3 HOH HOH 225 B HOH 137 3 HOH HOH 226 B HOH 138 3 HOH HOH 227 B HOH 140 3 HOH HOH 228 B HOH 141 3 HOH HOH 229 B HOH 144 3 HOH HOH 230 B HOH 146 3 HOH HOH 231 B HOH 147 3 HOH HOH 232 B HOH 151 3 HOH HOH 233 B HOH 156 3 HOH HOH 234 B HOH 157 3 HOH HOH 235 B HOH 163 3 HOH HOH 236 B HOH 164 3 HOH HOH 237 B HOH 165 3 HOH HOH 238 B HOH 167 3 HOH HOH 239 B HOH 173 3 HOH HOH 240 B n 1 0 A n 2 1 A G 2 n 3 G 2 A C 3 n 4 C 3 A G 4 n 5 G 4 A U 5 n 6 U 5 A C 6 n 7 C 6 A A 7 n 8 A 7 A C 8 n 9 C 8 A A 9 n 10 A 9 A C 10 n 11 C 10 A C 11 n 12 C 11 A G 12 n 13 G 12 A G 13 n 14 G 13 A U 14 n 15 U 14 A G 15 n 16 G 15 A A 16 n 17 A 16 A A 17 n 18 A 17 A G 18 n 19 G 18 A U 19 n 20 U 19 A C 20 n 21 C 20 A G 21 n 22 G 21 A C 22 n 23 C 22 A n 1 22 B n 2 23 B G 24 n 3 G 24 B C 25 n 4 C 25 B G 26 n 5 G 26 B U 27 n 6 U 27 B C 28 n 7 C 28 B A 29 n 8 A 29 B C 30 n 9 C 30 B A 31 n 10 A 31 B C 32 n 11 C 32 B C 33 n 12 C 33 B G 34 n 13 G 34 B G 35 n 14 G 35 B U 36 n 15 U 36 B G 37 n 16 G 37 B A 38 n 17 A 38 B A 39 n 18 A 39 B G 40 n 19 G 40 B U 41 n 20 U 41 B C 42 n 21 C 42 B G 43 n 22 G 43 B C 44 n 23 C 44 B software_defined_assembly PISA 2 dimeric 4210 -23 7660 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A U 0 A U 1 1 Y 1 A U 1 A U 2 1 Y 1 B U 22 B U 1 1 Y 1 B U 23 B U 2 1 Y 1 A U 5 0.071 SIDE CHAIN CNS_TOPPAR:protein_rep.param CNS_TOPPAR:dna-rna_rep.param CNS_TOPPAR:water_rep.param CNS_TOPPAR:ion.param amika_xplor.param 120.730 45.5528 10.200 -9.8000 0.0000 11.5700 1.7740 0.0000 8.0260 0.2679 0.2134 2.7000 10.0000 425 3693 4118 9.9000 95.7000 0.8070 1 FREE R-VALUE 179.000 MOLECULAR REPLACEMENT 64.5977 2.7000 10.0000 75 1053 42.97 39.55 80 898 0 42 0.000 1.500 5.008 2.000 0.000 2.000 6.969 2.500 2.700 32.820 4P20 4398 0.160 0.960 1 4.800 15897 3.590 120 100.000 0.432 2.700 2.800 2.000 1607 445 0.590 1 3.610 0 100.000 0.304 2.800 2.910 2.600 1555 424 0.610 1 3.670 0 100.000 0.269 2.910 3.040 2.800 1578 431 0.650 1 3.660 0 100.000 0.167 3.040 3.200 4.400 1596 434 0.920 1 3.660 7 100.000 0.151 3.200 3.400 5.200 1608 436 0.990 1 3.660 13 99.800 0.148 3.400 3.660 5.400 1646 447 1.010 1 3.630 22 99.800 0.130 3.660 4.030 7.200 1558 426 1.170 1 3.610 20 99.800 0.180 4.030 4.610 5.200 1599 439 1.240 1 3.620 8 100.000 0.159 4.610 5.810 5.900 1595 450 1.170 1 3.520 11 100.000 0.132 5.810 32.820 7.900 1555 466 1.320 1 3.250 39 100.000 phasing AMoRE refinement CNS data extraction PDB_EXTRACT Crystal structures of the bacterial ribosomal decoding site complexed with amikacin 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N hydrog WATSON-CRICK A G 2 A N1 G 3 1_555 B C 44 B N3 C 23 1_555 hydrog WATSON-CRICK A G 2 A N2 G 3 1_555 B C 44 B O2 C 23 1_555 hydrog WATSON-CRICK A G 2 A O6 G 3 1_555 B C 44 B N4 C 23 1_555 hydrog WATSON-CRICK A C 3 A N3 C 4 1_555 B G 43 B N1 G 22 1_555 hydrog WATSON-CRICK A C 3 A N4 C 4 1_555 B G 43 B O6 G 22 1_555 hydrog WATSON-CRICK A C 3 A O2 C 4 1_555 B G 43 B N2 G 22 1_555 hydrog WATSON-CRICK A G 4 A N1 G 5 1_555 B C 42 B N3 C 21 1_555 hydrog WATSON-CRICK A G 4 A N2 G 5 1_555 B C 42 B O2 C 21 1_555 hydrog WATSON-CRICK A G 4 A O6 G 5 1_555 B C 42 B N4 C 21 1_555 hydrog U-U MISPAIR A U 5 A O4 U 6 1_555 B U 41 B N3 U 20 1_555 hydrog WATSON-CRICK A C 6 A N3 C 7 1_555 B G 40 B N1 G 19 1_555 hydrog WATSON-CRICK A C 6 A N4 C 7 1_555 B G 40 B O6 G 19 1_555 hydrog WATSON-CRICK A C 6 A O2 C 7 1_555 B G 40 B N2 G 19 1_555 hydrog WATSON-CRICK A C 8 A N3 C 9 1_555 B G 37 B N1 G 16 1_555 hydrog WATSON-CRICK A C 8 A N4 C 9 1_555 B G 37 B O6 G 16 1_555 hydrog WATSON-CRICK A C 8 A O2 C 9 1_555 B G 37 B N2 G 16 1_555 hydrog WATSON-CRICK A A 9 A N1 A 10 1_555 B U 36 B N3 U 15 1_555 hydrog WATSON-CRICK A A 9 A N6 A 10 1_555 B U 36 B O4 U 15 1_555 hydrog WATSON-CRICK A C 10 A N3 C 11 1_555 B G 35 B N1 G 14 1_555 hydrog WATSON-CRICK A C 10 A N4 C 11 1_555 B G 35 B O6 G 14 1_555 hydrog WATSON-CRICK A C 10 A O2 C 11 1_555 B G 35 B N2 G 14 1_555 hydrog WATSON-CRICK A C 11 A N3 C 12 1_555 B G 34 B N1 G 13 1_555 hydrog WATSON-CRICK A C 11 A N4 C 12 1_555 B G 34 B O6 G 13 1_555 hydrog WATSON-CRICK A C 11 A O2 C 12 1_555 B G 34 B N2 G 13 1_555 hydrog WATSON-CRICK A G 12 A N1 G 13 1_555 B C 33 B N3 C 12 1_555 hydrog WATSON-CRICK A G 12 A N2 G 13 1_555 B C 33 B O2 C 12 1_555 hydrog WATSON-CRICK A G 12 A O6 G 13 1_555 B C 33 B N4 C 12 1_555 hydrog WATSON-CRICK A G 13 A N1 G 14 1_555 B C 32 B N3 C 11 1_555 hydrog WATSON-CRICK A G 13 A N2 G 14 1_555 B C 32 B O2 C 11 1_555 hydrog WATSON-CRICK A G 13 A O6 G 14 1_555 B C 32 B N4 C 11 1_555 hydrog WATSON-CRICK A U 14 A N3 U 15 1_555 B A 31 B N1 A 10 1_555 hydrog WATSON-CRICK A U 14 A O4 U 15 1_555 B A 31 B N6 A 10 1_555 hydrog WATSON-CRICK A G 15 A N1 G 16 1_555 B C 30 B N3 C 9 1_555 hydrog WATSON-CRICK A G 15 A N2 G 16 1_555 B C 30 B O2 C 9 1_555 hydrog WATSON-CRICK A G 15 A O6 G 16 1_555 B C 30 B N4 C 9 1_555 hydrog WATSON-CRICK A G 18 A N1 G 19 1_555 B C 28 B N3 C 7 1_555 hydrog WATSON-CRICK A G 18 A N2 G 19 1_555 B C 28 B O2 C 7 1_555 hydrog WATSON-CRICK A G 18 A O6 G 19 1_555 B C 28 B N4 C 7 1_555 hydrog U-U MISPAIR A U 19 A N3 U 20 1_555 B U 27 B O4 U 6 1_555 hydrog WATSON-CRICK A C 20 A N3 C 21 1_555 B G 26 B N1 G 5 1_555 hydrog WATSON-CRICK A C 20 A N4 C 21 1_555 B G 26 B O6 G 5 1_555 hydrog WATSON-CRICK A C 20 A O2 C 21 1_555 B G 26 B N2 G 5 1_555 hydrog WATSON-CRICK A G 21 A N1 G 22 1_555 B C 25 B N3 C 4 1_555 hydrog WATSON-CRICK A G 21 A N2 G 22 1_555 B C 25 B O2 C 4 1_555 hydrog WATSON-CRICK A G 21 A O6 G 22 1_555 B C 25 B N4 C 4 1_555 hydrog WATSON-CRICK A C 22 A N3 C 23 1_555 B G 24 B N1 G 3 1_555 hydrog WATSON-CRICK A C 22 A N4 C 23 1_555 B G 24 B O6 G 3 1_555 hydrog WATSON-CRICK A C 22 A O2 C 23 1_555 B G 24 B N2 G 3 1_555 RNA/ANTIBIOTIC AMINOGLYCOSIDE, HABA GROUP, RIBOSOMAL DECODING SITE, X-RAY ANALYSIS, RNA, AMIKACIN, RNA-ANTIBIOTIC complex 4P20 PDB 1 4P20 0 22 4P20 0 22 4P20 A 1 1 23 22 44 4P20 22 44 4P20 B 1 1 23 binding site for residue AKN A 101 A AKN 101 Software 15 binding site for residue AKN B 101 B AKN 101 Software 16 A G 15 A G 16 15 1_555 A A 16 A A 17 15 1_555 A A 17 A A 18 15 1_555 A G 18 A G 19 15 1_555 A U 19 A U 20 15 1_555 A C 20 A C 21 15 1_555 A G 21 A G 22 15 1_555 A C 22 A C 23 15 1_555 A HOH 233 E HOH 15 1_555 B G 24 B G 3 15 1_555 B C 25 B C 4 15 1_555 B G 26 B G 5 15 1_555 B U 27 B U 6 15 1_555 B C 28 B C 7 15 1_555 B A 29 B A 8 15 1_555 A G 2 A G 3 16 1_555 A C 3 A C 4 16 1_555 A G 4 A G 5 16 1_555 A C 6 A C 7 16 1_555 A A 7 A A 8 16 1_555 B G 37 B G 16 16 1_555 B A 38 B A 17 16 1_555 B A 39 B A 18 16 1_555 B G 40 B G 19 16 1_555 B U 41 B U 20 16 1_555 B C 42 B C 21 16 1_555 B G 43 B G 22 16 1_555 B C 44 B C 23 16 1_555 B HOH 203 F HOH 16 1_555 B HOH 207 F HOH 16 1_555 B HOH 222 F HOH 16 1_555 4 P 1 21 1