0.013024
0.000000
0.000000
0.000000
0.008819
0.000000
0.000000
0.000000
0.007127
0.000000
0.000000
0.000000
Yatime, L.
Andersen, G.R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
76.780
113.390
140.320
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
CA
N
82
N
CL
N
83
N
N
N
84
R
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
S
N
89
N
O
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
N
N
98
S
C
N
99
N
C
N
100
N
O
N
101
N
C
N
102
N
C
N
103
N
C
N
104
N
O
N
105
N
N
N
106
N
O
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
C
N
124
N
O
N
125
N
O
N
126
N
O
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
N
C
N
138
N
C
N
139
N
O
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
S
C
N
148
N
C
N
149
N
O
N
150
N
C
Y
151
N
C
Y
152
N
N
Y
153
N
C
Y
154
N
C
Y
155
N
N
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
S
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
N
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
S
N
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
Y
264
N
C
Y
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
S
C
N
284
N
C
N
285
N
O
N
286
N
C
N
287
N
C
N
288
N
C
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
O
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
R
C
N
318
N
O
N
319
N
C
N
320
N
O
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
N
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
N
344
N
O
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
N
368
N
O
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
N
386
N
C
N
387
N
C
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
ZN
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
Y
146
N
sing
Y
147
N
doub
Y
148
N
doub
N
149
N
sing
Y
150
N
sing
N
151
N
sing
Y
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
Y
254
N
doub
Y
255
N
sing
Y
256
N
sing
N
257
N
sing
Y
258
N
doub
N
259
N
sing
Y
260
N
doub
N
261
N
sing
Y
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
doub
Y
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
doub
N
358
N
sing
Y
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
UK
Structure
STRUE6
2005
0969-2126
10.1016/j.str.2016.09.011
27818100
The Structure of the RAGE:S100A6 Complex Reveals a Unique Mode of Homodimerization for S100 Proteins.
2016
10.2210/pdb4p2y/pdb
pdb_00004p2y
100
1
CCD
2012-02-19
MAR CCD 165 mm
Si(111)
SINGLE WAVELENGTH
x-ray
1
1.041
1.0
I911-2
MAX II
1.041
SYNCHROTRON
MAX II BEAMLINE I911-2
32680.297
Advanced glycosylation end product-specific receptor
V, C1 and C2 domains (VC1C2 module), full-length ectodomain, UNP residues 23-323
1
man
polymer
10192.740
Protein S100-A6
1
man
polymer
65.409
ZINC ION
6
syn
non-polymer
35.453
CHLORIDE ION
6
syn
non-polymer
59.044
ACETATE ION
7
syn
non-polymer
40.078
CALCIUM ION
2
syn
non-polymer
18.015
water
186
nat
water
Receptor for advanced glycosylation end products
5B10, Calcyclin, Prolactin receptor-associated protein, S100 calcium-binding protein A6
no
no
GAMAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRC
QAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRR
HPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTC
EVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP
GAMAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRC
QAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRR
HPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTC
EVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP
A
polypeptide(L)
no
no
GAMACPLDQAIGLLVAIFHKYSGKEGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMDDLDRNKDQEVNFQEYVAFLG
ALALIYNEALK
GAMACPLDQAIGLLVAIFHKYSGKEGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMDDLDRNKDQEVNFQEYVAFLG
ALALIYNEALK
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
304
AGER, RAGE
9606
Homo sapiens
562
Escherichia coli
Shuffle T7 Express
plasmid
Biological sequence
pETM11
Mouse
sample
1
91
S100a6, Cacy
10090
Mus musculus
469008
Escherichia coli
BL21(DE3)
plasmid
Biological sequence
pETM11
1
3.61
65.90
VAPOR DIFFUSION, HANGING DROP
6.5
0.2 M Zn acetate, 0.1 M Na cacodylate pH 6.5, 10% isopropanol
277
citation
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Database references
Database references
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2015-03-11
1
1
2016-11-23
1
2
2017-11-22
1
3
2023-09-27
_citation.journal_id_CSD
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_symmetry
4LP5 is the structure of the apo-ectodomain of the same receptor
4LP4 is the structure of the apo-VC1 fragment from the ectodomain of the same receptor
N
RCSB
Y
RCSB
2014-03-05
REL
REL
ZN
ZINC ION
CL
CHLORIDE ION
ACT
ACETATE ION
CA
CALCIUM ION
HOH
water
4LP5
4LP5, 1K96
PDB
experimental model
1K96
4LP5, 1K96
PDB
experimental model
ZN
1001
3
ZN
ZN
1001
A
ZN
1003
3
ZN
ZN
1002
A
ZN
1004
3
ZN
ZN
1003
A
ZN
1005
3
ZN
ZN
1004
A
CL
2002
4
CL
CL
1005
A
CL
2003
4
CL
CL
1006
A
CL
2004
4
CL
CL
1007
A
CL
2005
4
CL
CL
1008
A
CL
2006
4
CL
CL
1009
A
ACT
1
5
ACT
ACT
1010
A
ACT
2
5
ACT
ACT
1011
A
ACT
3
5
ACT
ACT
1012
A
ACT
4
5
ACT
ACT
1013
A
ACT
5
5
ACT
ACT
1014
A
ACT
6
5
ACT
ACT
1015
A
ZN
1002
3
ZN
ZN
101
B
CL
2001
4
CL
CL
102
B
CA
101
6
CA
CA
103
B
CA
102
6
CA
CA
104
B
ZN
201
3
ZN
ZN
105
B
ACT
7
5
ACT
ACT
106
B
HOH
28
7
HOH
HOH
1101
A
HOH
153
7
HOH
HOH
1102
A
HOH
131
7
HOH
HOH
1103
A
HOH
167
7
HOH
HOH
1104
A
HOH
58
7
HOH
HOH
1105
A
HOH
54
7
HOH
HOH
1106
A
HOH
185
7
HOH
HOH
1107
A
HOH
102
7
HOH
HOH
1108
A
HOH
178
7
HOH
HOH
1109
A
HOH
169
7
HOH
HOH
1110
A
HOH
97
7
HOH
HOH
1111
A
HOH
162
7
HOH
HOH
1112
A
HOH
92
7
HOH
HOH
1113
A
HOH
24
7
HOH
HOH
1114
A
HOH
136
7
HOH
HOH
1115
A
HOH
141
7
HOH
HOH
1116
A
HOH
71
7
HOH
HOH
1117
A
HOH
129
7
HOH
HOH
1118
A
HOH
138
7
HOH
HOH
1119
A
HOH
16
7
HOH
HOH
1120
A
HOH
176
7
HOH
HOH
1121
A
HOH
179
7
HOH
HOH
1122
A
HOH
57
7
HOH
HOH
1123
A
HOH
101
7
HOH
HOH
1124
A
HOH
25
7
HOH
HOH
1125
A
HOH
163
7
HOH
HOH
1126
A
HOH
23
7
HOH
HOH
1127
A
HOH
6
7
HOH
HOH
1128
A
HOH
19
7
HOH
HOH
1129
A
HOH
81
7
HOH
HOH
1130
A
HOH
44
7
HOH
HOH
1131
A
HOH
1
7
HOH
HOH
1132
A
HOH
116
7
HOH
HOH
1133
A
HOH
105
7
HOH
HOH
1134
A
HOH
21
7
HOH
HOH
1135
A
HOH
125
7
HOH
HOH
1136
A
HOH
38
7
HOH
HOH
1137
A
HOH
75
7
HOH
HOH
1138
A
HOH
2
7
HOH
HOH
1139
A
HOH
111
7
HOH
HOH
1140
A
HOH
56
7
HOH
HOH
1141
A
HOH
108
7
HOH
HOH
1142
A
HOH
182
7
HOH
HOH
1143
A
HOH
89
7
HOH
HOH
1144
A
HOH
121
7
HOH
HOH
1145
A
HOH
124
7
HOH
HOH
1146
A
HOH
55
7
HOH
HOH
1147
A
HOH
148
7
HOH
HOH
1148
A
HOH
130
7
HOH
HOH
1149
A
HOH
160
7
HOH
HOH
1150
A
HOH
94
7
HOH
HOH
1151
A
HOH
117
7
HOH
HOH
1152
A
HOH
170
7
HOH
HOH
1153
A
HOH
62
7
HOH
HOH
1154
A
HOH
41
7
HOH
HOH
1155
A
HOH
120
7
HOH
HOH
1156
A
HOH
127
7
HOH
HOH
1157
A
HOH
184
7
HOH
HOH
1158
A
HOH
3
7
HOH
HOH
1159
A
HOH
4
7
HOH
HOH
1160
A
HOH
5
7
HOH
HOH
1161
A
HOH
9
7
HOH
HOH
1162
A
HOH
10
7
HOH
HOH
1163
A
HOH
11
7
HOH
HOH
1164
A
HOH
12
7
HOH
HOH
1165
A
HOH
13
7
HOH
HOH
1166
A
HOH
14
7
HOH
HOH
1167
A
HOH
15
7
HOH
HOH
1168
A
HOH
18
7
HOH
HOH
1169
A
HOH
20
7
HOH
HOH
1170
A
HOH
26
7
HOH
HOH
1171
A
HOH
32
7
HOH
HOH
1172
A
HOH
33
7
HOH
HOH
1173
A
HOH
35
7
HOH
HOH
1174
A
HOH
36
7
HOH
HOH
1175
A
HOH
39
7
HOH
HOH
1176
A
HOH
42
7
HOH
HOH
1177
A
HOH
43
7
HOH
HOH
1178
A
HOH
45
7
HOH
HOH
1179
A
HOH
46
7
HOH
HOH
1180
A
HOH
47
7
HOH
HOH
1181
A
HOH
49
7
HOH
HOH
1182
A
HOH
51
7
HOH
HOH
1183
A
HOH
52
7
HOH
HOH
1184
A
HOH
59
7
HOH
HOH
1185
A
HOH
60
7
HOH
HOH
1186
A
HOH
61
7
HOH
HOH
1187
A
HOH
63
7
HOH
HOH
1188
A
HOH
64
7
HOH
HOH
1189
A
HOH
65
7
HOH
HOH
1190
A
HOH
66
7
HOH
HOH
1191
A
HOH
67
7
HOH
HOH
1192
A
HOH
68
7
HOH
HOH
1193
A
HOH
69
7
HOH
HOH
1194
A
HOH
70
7
HOH
HOH
1195
A
HOH
72
7
HOH
HOH
1196
A
HOH
73
7
HOH
HOH
1197
A
HOH
74
7
HOH
HOH
1198
A
HOH
76
7
HOH
HOH
1199
A
HOH
77
7
HOH
HOH
1200
A
HOH
78
7
HOH
HOH
1201
A
HOH
79
7
HOH
HOH
1202
A
HOH
80
7
HOH
HOH
1203
A
HOH
82
7
HOH
HOH
1204
A
HOH
83
7
HOH
HOH
1205
A
HOH
90
7
HOH
HOH
1206
A
HOH
91
7
HOH
HOH
1207
A
HOH
95
7
HOH
HOH
1208
A
HOH
96
7
HOH
HOH
1209
A
HOH
100
7
HOH
HOH
1210
A
HOH
103
7
HOH
HOH
1211
A
HOH
104
7
HOH
HOH
1212
A
HOH
106
7
HOH
HOH
1213
A
HOH
109
7
HOH
HOH
1214
A
HOH
110
7
HOH
HOH
1215
A
HOH
112
7
HOH
HOH
1216
A
HOH
113
7
HOH
HOH
1217
A
HOH
114
7
HOH
HOH
1218
A
HOH
115
7
HOH
HOH
1219
A
HOH
118
7
HOH
HOH
1220
A
HOH
119
7
HOH
HOH
1221
A
HOH
122
7
HOH
HOH
1222
A
HOH
123
7
HOH
HOH
1223
A
HOH
126
7
HOH
HOH
1224
A
HOH
128
7
HOH
HOH
1225
A
HOH
132
7
HOH
HOH
1226
A
HOH
133
7
HOH
HOH
1227
A
HOH
134
7
HOH
HOH
1228
A
HOH
135
7
HOH
HOH
1229
A
HOH
137
7
HOH
HOH
1230
A
HOH
140
7
HOH
HOH
1231
A
HOH
142
7
HOH
HOH
1232
A
HOH
143
7
HOH
HOH
1233
A
HOH
144
7
HOH
HOH
1234
A
HOH
145
7
HOH
HOH
1235
A
HOH
147
7
HOH
HOH
1236
A
HOH
149
7
HOH
HOH
1237
A
HOH
150
7
HOH
HOH
1238
A
HOH
151
7
HOH
HOH
1239
A
HOH
154
7
HOH
HOH
1240
A
HOH
155
7
HOH
HOH
1241
A
HOH
156
7
HOH
HOH
1242
A
HOH
158
7
HOH
HOH
1243
A
HOH
159
7
HOH
HOH
1244
A
HOH
161
7
HOH
HOH
1245
A
HOH
164
7
HOH
HOH
1246
A
HOH
165
7
HOH
HOH
1247
A
HOH
166
7
HOH
HOH
1248
A
HOH
171
7
HOH
HOH
1249
A
HOH
172
7
HOH
HOH
1250
A
HOH
173
7
HOH
HOH
1251
A
HOH
177
7
HOH
HOH
1252
A
HOH
181
7
HOH
HOH
1253
A
HOH
183
7
HOH
HOH
1254
A
HOH
180
7
HOH
HOH
201
B
HOH
93
7
HOH
HOH
202
B
HOH
168
7
HOH
HOH
203
B
HOH
7
7
HOH
HOH
204
B
HOH
30
7
HOH
HOH
205
B
HOH
98
7
HOH
HOH
206
B
HOH
146
7
HOH
HOH
207
B
HOH
186
7
HOH
HOH
208
B
HOH
53
7
HOH
HOH
209
B
HOH
31
7
HOH
HOH
210
B
HOH
17
7
HOH
HOH
211
B
HOH
152
7
HOH
HOH
212
B
HOH
50
7
HOH
HOH
213
B
HOH
87
7
HOH
HOH
214
B
HOH
174
7
HOH
HOH
215
B
HOH
48
7
HOH
HOH
216
B
HOH
8
7
HOH
HOH
217
B
HOH
22
7
HOH
HOH
218
B
HOH
27
7
HOH
HOH
219
B
HOH
29
7
HOH
HOH
220
B
HOH
34
7
HOH
HOH
221
B
HOH
37
7
HOH
HOH
222
B
HOH
40
7
HOH
HOH
223
B
HOH
84
7
HOH
HOH
224
B
HOH
85
7
HOH
HOH
225
B
HOH
86
7
HOH
HOH
226
B
HOH
88
7
HOH
HOH
227
B
HOH
99
7
HOH
HOH
228
B
HOH
107
7
HOH
HOH
229
B
HOH
139
7
HOH
HOH
230
B
HOH
157
7
HOH
HOH
231
B
HOH
175
7
HOH
HOH
232
B
n
1
20
A
ALA
21
n
2
ALA
21
A
MET
22
n
3
MET
22
A
ALA
23
n
4
ALA
23
A
GLN
24
n
5
GLN
24
A
ASN
25
n
6
ASN
25
A
ILE
26
n
7
ILE
26
A
THR
27
n
8
THR
27
A
ALA
28
n
9
ALA
28
A
ARG
29
n
10
ARG
29
A
ILE
30
n
11
ILE
30
A
GLY
31
n
12
GLY
31
A
GLU
32
n
13
GLU
32
A
PRO
33
n
14
PRO
33
A
LEU
34
n
15
LEU
34
A
VAL
35
n
16
VAL
35
A
LEU
36
n
17
LEU
36
A
LYS
37
n
18
LYS
37
A
CYS
38
n
19
CYS
38
A
LYS
39
n
20
LYS
39
A
GLY
40
n
21
GLY
40
A
ALA
41
n
22
ALA
41
A
PRO
42
n
23
PRO
42
A
LYS
43
n
24
LYS
43
A
LYS
44
n
25
LYS
44
A
PRO
45
n
26
PRO
45
A
PRO
46
n
27
PRO
46
A
GLN
47
n
28
GLN
47
A
ARG
48
n
29
ARG
48
A
LEU
49
n
30
LEU
49
A
GLU
50
n
31
GLU
50
A
TRP
51
n
32
TRP
51
A
LYS
52
n
33
LYS
52
A
LEU
53
n
34
LEU
53
A
ASN
54
n
35
ASN
54
A
THR
55
n
36
THR
55
A
GLY
56
n
37
GLY
56
A
ARG
57
n
38
ARG
57
A
THR
58
n
39
THR
58
A
GLU
59
n
40
GLU
59
A
ALA
60
n
41
ALA
60
A
TRP
61
n
42
TRP
61
A
LYS
62
n
43
LYS
62
A
VAL
63
n
44
VAL
63
A
LEU
64
n
45
LEU
64
A
SER
65
n
46
SER
65
A
PRO
66
n
47
PRO
66
A
GLN
67
n
48
GLN
67
A
GLY
68
n
49
GLY
68
A
GLY
69
n
50
GLY
69
A
GLY
70
n
51
GLY
70
A
PRO
71
n
52
PRO
71
A
TRP
72
n
53
TRP
72
A
ASP
73
n
54
ASP
73
A
SER
74
n
55
SER
74
A
VAL
75
n
56
VAL
75
A
ALA
76
n
57
ALA
76
A
ARG
77
n
58
ARG
77
A
VAL
78
n
59
VAL
78
A
LEU
79
n
60
LEU
79
A
PRO
80
n
61
PRO
80
A
ASN
81
n
62
ASN
81
A
GLY
82
n
63
GLY
82
A
SER
83
n
64
SER
83
A
LEU
84
n
65
LEU
84
A
PHE
85
n
66
PHE
85
A
LEU
86
n
67
LEU
86
A
PRO
87
n
68
PRO
87
A
ALA
88
n
69
ALA
88
A
VAL
89
n
70
VAL
89
A
GLY
90
n
71
GLY
90
A
ILE
91
n
72
ILE
91
A
GLN
92
n
73
GLN
92
A
ASP
93
n
74
ASP
93
A
GLU
94
n
75
GLU
94
A
GLY
95
n
76
GLY
95
A
ILE
96
n
77
ILE
96
A
PHE
97
n
78
PHE
97
A
ARG
98
n
79
ARG
98
A
CYS
99
n
80
CYS
99
A
GLN
100
n
81
GLN
100
A
ALA
101
n
82
ALA
101
A
MET
102
n
83
MET
102
A
ASN
103
n
84
ASN
103
A
ARG
104
n
85
ARG
104
A
ASN
105
n
86
ASN
105
A
GLY
106
n
87
GLY
106
A
LYS
107
n
88
LYS
107
A
GLU
108
n
89
GLU
108
A
THR
109
n
90
THR
109
A
LYS
110
n
91
LYS
110
A
SER
111
n
92
SER
111
A
ASN
112
n
93
ASN
112
A
TYR
113
n
94
TYR
113
A
ARG
114
n
95
ARG
114
A
VAL
115
n
96
VAL
115
A
ARG
116
n
97
ARG
116
A
VAL
117
n
98
VAL
117
A
TYR
118
n
99
TYR
118
A
GLN
119
n
100
GLN
119
A
ILE
120
n
101
ILE
120
A
PRO
121
n
102
PRO
121
A
GLY
122
n
103
GLY
122
A
LYS
123
n
104
LYS
123
A
PRO
124
n
105
PRO
124
A
GLU
125
n
106
GLU
125
A
ILE
126
n
107
ILE
126
A
VAL
127
n
108
VAL
127
A
ASP
128
n
109
ASP
128
A
SER
129
n
110
SER
129
A
ALA
130
n
111
ALA
130
A
SER
131
n
112
SER
131
A
GLU
132
n
113
GLU
132
A
LEU
133
n
114
LEU
133
A
THR
134
n
115
THR
134
A
ALA
135
n
116
ALA
135
A
GLY
136
n
117
GLY
136
A
VAL
137
n
118
VAL
137
A
PRO
138
n
119
PRO
138
A
ASN
139
n
120
ASN
139
A
LYS
140
n
121
LYS
140
A
VAL
141
n
122
VAL
141
A
GLY
142
n
123
GLY
142
A
THR
143
n
124
THR
143
A
CYS
144
n
125
CYS
144
A
VAL
145
n
126
VAL
145
A
SER
146
n
127
SER
146
A
GLU
147
n
128
GLU
147
A
GLY
148
n
129
GLY
148
A
SER
149
n
130
SER
149
A
TYR
150
n
131
TYR
150
A
PRO
151
n
132
PRO
151
A
ALA
152
n
133
ALA
152
A
GLY
153
n
134
GLY
153
A
THR
154
n
135
THR
154
A
LEU
155
n
136
LEU
155
A
SER
156
n
137
SER
156
A
TRP
157
n
138
TRP
157
A
HIS
158
n
139
HIS
158
A
LEU
159
n
140
LEU
159
A
ASP
160
n
141
ASP
160
A
GLY
161
n
142
GLY
161
A
LYS
162
n
143
LYS
162
A
PRO
163
n
144
PRO
163
A
LEU
164
n
145
LEU
164
A
VAL
165
n
146
VAL
165
A
PRO
166
n
147
PRO
166
A
ASN
167
n
148
ASN
167
A
GLU
168
n
149
GLU
168
A
LYS
169
n
150
LYS
169
A
GLY
170
n
151
GLY
170
A
VAL
171
n
152
VAL
171
A
SER
172
n
153
SER
172
A
VAL
173
n
154
VAL
173
A
LYS
174
n
155
LYS
174
A
GLU
175
n
156
GLU
175
A
GLN
176
n
157
GLN
176
A
THR
177
n
158
THR
177
A
ARG
178
n
159
ARG
178
A
ARG
179
n
160
ARG
179
A
HIS
180
n
161
HIS
180
A
PRO
181
n
162
PRO
181
A
GLU
182
n
163
GLU
182
A
THR
183
n
164
THR
183
A
GLY
184
n
165
GLY
184
A
LEU
185
n
166
LEU
185
A
PHE
186
n
167
PHE
186
A
THR
187
n
168
THR
187
A
LEU
188
n
169
LEU
188
A
GLN
189
n
170
GLN
189
A
SER
190
n
171
SER
190
A
GLU
191
n
172
GLU
191
A
LEU
192
n
173
LEU
192
A
MET
193
n
174
MET
193
A
VAL
194
n
175
VAL
194
A
THR
195
n
176
THR
195
A
PRO
196
n
177
PRO
196
A
ALA
197
n
178
ALA
197
A
ARG
198
n
179
ARG
198
A
GLY
199
n
180
GLY
199
A
GLY
200
n
181
GLY
200
A
ASP
201
n
182
ASP
201
A
PRO
202
n
183
PRO
202
A
ARG
203
n
184
ARG
203
A
PRO
204
n
185
PRO
204
A
THR
205
n
186
THR
205
A
PHE
206
n
187
PHE
206
A
SER
207
n
188
SER
207
A
CYS
208
n
189
CYS
208
A
SER
209
n
190
SER
209
A
PHE
210
n
191
PHE
210
A
SER
211
n
192
SER
211
A
PRO
212
n
193
PRO
212
A
GLY
213
n
194
GLY
213
A
LEU
214
n
195
LEU
214
A
PRO
215
n
196
PRO
215
A
ARG
216
n
197
ARG
216
A
HIS
217
n
198
HIS
217
A
ARG
218
n
199
ARG
218
A
ALA
219
n
200
ALA
219
A
LEU
220
n
201
LEU
220
A
ARG
221
n
202
ARG
221
A
THR
222
n
203
THR
222
A
ALA
223
n
204
ALA
223
A
PRO
224
n
205
PRO
224
A
ILE
225
n
206
ILE
225
A
GLN
226
n
207
GLN
226
A
PRO
227
n
208
PRO
227
A
ARG
228
n
209
ARG
228
A
VAL
229
n
210
VAL
229
A
TRP
230
n
211
TRP
230
A
GLU
231
n
212
GLU
231
A
PRO
232
n
213
PRO
232
A
VAL
233
n
214
VAL
233
A
PRO
234
n
215
PRO
234
A
LEU
235
n
216
LEU
235
A
GLU
236
n
217
GLU
236
A
GLU
237
n
218
GLU
237
A
VAL
238
n
219
VAL
238
A
GLN
239
n
220
GLN
239
A
LEU
240
n
221
LEU
240
A
VAL
241
n
222
VAL
241
A
VAL
242
n
223
VAL
242
A
GLU
243
n
224
GLU
243
A
PRO
244
n
225
PRO
244
A
GLU
245
n
226
GLU
245
A
GLY
246
n
227
GLY
246
A
GLY
247
n
228
GLY
247
A
ALA
248
n
229
ALA
248
A
VAL
249
n
230
VAL
249
A
ALA
250
n
231
ALA
250
A
PRO
251
n
232
PRO
251
A
GLY
252
n
233
GLY
252
A
GLY
253
n
234
GLY
253
A
THR
254
n
235
THR
254
A
VAL
255
n
236
VAL
255
A
THR
256
n
237
THR
256
A
LEU
257
n
238
LEU
257
A
THR
258
n
239
THR
258
A
CYS
259
n
240
CYS
259
A
GLU
260
n
241
GLU
260
A
VAL
261
n
242
VAL
261
A
PRO
262
n
243
PRO
262
A
ALA
263
n
244
ALA
263
A
GLN
264
n
245
GLN
264
A
PRO
265
n
246
PRO
265
A
SER
266
n
247
SER
266
A
PRO
267
n
248
PRO
267
A
GLN
268
n
249
GLN
268
A
ILE
269
n
250
ILE
269
A
HIS
270
n
251
HIS
270
A
TRP
271
n
252
TRP
271
A
MET
272
n
253
MET
272
A
LYS
273
n
254
LYS
273
A
ASP
274
n
255
ASP
274
A
GLY
275
n
256
GLY
275
A
VAL
276
n
257
VAL
276
A
PRO
277
n
258
PRO
277
A
LEU
278
n
259
LEU
278
A
PRO
279
n
260
PRO
279
A
LEU
280
n
261
LEU
280
A
PRO
281
n
262
PRO
281
A
PRO
282
n
263
PRO
282
A
SER
283
n
264
SER
283
A
PRO
284
n
265
PRO
284
A
VAL
285
n
266
VAL
285
A
LEU
286
n
267
LEU
286
A
ILE
287
n
268
ILE
287
A
LEU
288
n
269
LEU
288
A
PRO
289
n
270
PRO
289
A
GLU
290
n
271
GLU
290
A
ILE
291
n
272
ILE
291
A
GLY
292
n
273
GLY
292
A
PRO
293
n
274
PRO
293
A
GLN
294
n
275
GLN
294
A
ASP
295
n
276
ASP
295
A
GLN
296
n
277
GLN
296
A
GLY
297
n
278
GLY
297
A
THR
298
n
279
THR
298
A
TYR
299
n
280
TYR
299
A
SER
300
n
281
SER
300
A
CYS
301
n
282
CYS
301
A
VAL
302
n
283
VAL
302
A
ALA
303
n
284
ALA
303
A
THR
304
n
285
THR
304
A
HIS
305
n
286
HIS
305
A
SER
306
n
287
SER
306
A
SER
307
n
288
SER
307
A
HIS
308
n
289
HIS
308
A
GLY
309
n
290
GLY
309
A
PRO
310
n
291
PRO
310
A
GLN
311
n
292
GLN
311
A
GLU
312
n
293
GLU
312
A
SER
313
n
294
SER
313
A
ARG
314
n
295
ARG
314
A
ALA
315
n
296
ALA
315
A
VAL
316
n
297
VAL
316
A
SER
317
n
298
SER
317
A
ILE
318
n
299
ILE
318
A
SER
319
n
300
SER
319
A
ILE
320
n
301
ILE
320
A
ILE
321
n
302
ILE
321
A
n
303
322
A
n
304
323
A
n
1
-1
B
n
2
0
B
n
3
1
B
ALA
2
n
4
ALA
2
B
CYS
3
n
5
CYS
3
B
PRO
4
n
6
PRO
4
B
LEU
5
n
7
LEU
5
B
ASP
6
n
8
ASP
6
B
GLN
7
n
9
GLN
7
B
ALA
8
n
10
ALA
8
B
ILE
9
n
11
ILE
9
B
GLY
10
n
12
GLY
10
B
LEU
11
n
13
LEU
11
B
LEU
12
n
14
LEU
12
B
VAL
13
n
15
VAL
13
B
ALA
14
n
16
ALA
14
B
ILE
15
n
17
ILE
15
B
PHE
16
n
18
PHE
16
B
HIS
17
n
19
HIS
17
B
LYS
18
n
20
LYS
18
B
TYR
19
n
21
TYR
19
B
SER
20
n
22
SER
20
B
GLY
21
n
23
GLY
21
B
LYS
22
n
24
LYS
22
B
GLU
23
n
25
GLU
23
B
GLY
24
n
26
GLY
24
B
ASP
25
n
27
ASP
25
B
LYS
26
n
28
LYS
26
B
HIS
27
n
29
HIS
27
B
THR
28
n
30
THR
28
B
LEU
29
n
31
LEU
29
B
SER
30
n
32
SER
30
B
LYS
31
n
33
LYS
31
B
LYS
32
n
34
LYS
32
B
GLU
33
n
35
GLU
33
B
LEU
34
n
36
LEU
34
B
LYS
35
n
37
LYS
35
B
GLU
36
n
38
GLU
36
B
LEU
37
n
39
LEU
37
B
ILE
38
n
40
ILE
38
B
GLN
39
n
41
GLN
39
B
LYS
40
n
42
LYS
40
B
GLU
41
n
43
GLU
41
B
LEU
42
n
44
LEU
42
B
THR
43
n
45
THR
43
B
ILE
44
n
46
ILE
44
B
GLY
45
n
47
GLY
45
B
SER
46
n
48
SER
46
B
LYS
47
n
49
LYS
47
B
LEU
48
n
50
LEU
48
B
GLN
49
n
51
GLN
49
B
ASP
50
n
52
ASP
50
B
ALA
51
n
53
ALA
51
B
GLU
52
n
54
GLU
52
B
ILE
53
n
55
ILE
53
B
ALA
54
n
56
ALA
54
B
ARG
55
n
57
ARG
55
B
LEU
56
n
58
LEU
56
B
MET
57
n
59
MET
57
B
ASP
58
n
60
ASP
58
B
ASP
59
n
61
ASP
59
B
LEU
60
n
62
LEU
60
B
ASP
61
n
63
ASP
61
B
ARG
62
n
64
ARG
62
B
ASN
63
n
65
ASN
63
B
LYS
64
n
66
LYS
64
B
ASP
65
n
67
ASP
65
B
GLN
66
n
68
GLN
66
B
GLU
67
n
69
GLU
67
B
VAL
68
n
70
VAL
68
B
ASN
69
n
71
ASN
69
B
PHE
70
n
72
PHE
70
B
GLN
71
n
73
GLN
71
B
GLU
72
n
74
GLU
72
B
TYR
73
n
75
TYR
73
B
VAL
74
n
76
VAL
74
B
ALA
75
n
77
ALA
75
B
PHE
76
n
78
PHE
76
B
LEU
77
n
79
LEU
77
B
GLY
78
n
80
GLY
78
B
ALA
79
n
81
ALA
79
B
LEU
80
n
82
LEU
80
B
ALA
81
n
83
ALA
81
B
LEU
82
n
84
LEU
82
B
ILE
83
n
85
ILE
83
B
TYR
84
n
86
TYR
84
B
ASN
85
n
87
ASN
85
B
GLU
86
n
88
GLU
86
B
ALA
87
n
89
ALA
87
B
LEU
88
n
90
LEU
88
B
LYS
89
n
91
LYS
89
B
5.2586
1.3576
-0.8532
6.2348
1.3170
5.5520
0.0424
-0.7148
0.3924
0.7979
0.0170
-0.0176
-0.2583
0.1279
-0.0255
0.2713
0.0264
-0.0352
0.3278
-0.0535
0.2445
refined
5.7784
131.0963
33.1544
X-RAY DIFFRACTION
1.0619
0.0162
0.3126
5.9860
3.8046
3.5627
-0.0417
-0.0812
0.0141
0.3018
0.1680
-0.3939
0.2008
0.3851
-0.1505
0.1478
0.0026
-0.0059
0.2987
0.0110
0.2594
refined
12.5367
106.7029
13.7986
X-RAY DIFFRACTION
2.3074
-2.3078
-0.8326
2.6207
1.8920
3.7491
-0.2407
-0.0960
-0.5876
0.5576
-0.2483
1.0794
0.6888
-0.5168
0.4850
0.5915
-0.0676
0.2838
0.5948
-0.1669
0.7468
refined
22.5598
71.4764
-29.0933
X-RAY DIFFRACTION
1.2301
0.9628
-0.1819
1.1474
0.9420
9.2523
0.1848
0.1715
-0.3187
-0.1810
0.0013
-0.1814
1.0179
0.9888
-0.1769
0.4040
0.0847
0.0819
0.2663
-0.0723
0.3729
refined
9.2012
79.3921
-9.1961
X-RAY DIFFRACTION
4.6970
-2.6336
-0.1351
7.3386
-0.1474
4.3816
-0.0699
0.3665
-1.0798
-0.7550
0.1432
0.3736
1.4669
-0.4051
-0.0600
0.8158
-0.1259
0.0775
0.3298
-0.1158
0.5179
refined
-2.6922
71.4549
-15.5723
X-RAY DIFFRACTION
3.2449
-1.3026
0.7946
8.0662
-4.6966
5.3045
-0.0631
-0.0860
-0.2634
0.4769
0.1294
0.3357
0.4278
-0.1710
-0.0673
0.5125
-0.0722
0.0559
0.2682
-0.0657
0.2953
refined
-3.6536
77.2660
-6.3623
X-RAY DIFFRACTION
A
21
A
94
X-RAY DIFFRACTION
1
chain 'A' and (resseq 21:94)
A
95
A
230
X-RAY DIFFRACTION
2
chain 'A' and (resseq 95:230)
A
231
A
321
X-RAY DIFFRACTION
3
chain 'A' and (resseq 231:321)
B
2
B
30
X-RAY DIFFRACTION
4
chain 'B' and (resseq 2:30)
B
31
B
60
X-RAY DIFFRACTION
5
chain 'B' and (resseq 31:60)
B
61
B
89
X-RAY DIFFRACTION
6
chain 'B' and (resseq 61:89)
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
8
octameric
software_defined_assembly
PISA
4
tetrameric
3820
-259
22530
31060
-1338
74340
11970
-616
40730
A
GLU
32
A
OE1
GLU
13
1_555
A
ZN
1003
E
ZN
ZN
2_575
A
HIS
217
A
ND1
HIS
198
1_555
44.2
A
GLU
32
A
OE1
GLU
13
1_555
A
ZN
1003
E
ZN
ZN
2_575
A
HOH
1144
X
O
HOH
1_555
43.9
A
HIS
217
A
ND1
HIS
198
1_555
A
ZN
1003
E
ZN
ZN
2_575
A
HOH
1144
X
O
HOH
1_555
11.6
A
GLU
32
A
OE1
GLU
13
1_555
A
ZN
1003
E
ZN
ZN
2_575
A
HOH
1147
X
O
HOH
2_575
36.5
A
HIS
217
A
ND1
HIS
198
1_555
A
ZN
1003
E
ZN
ZN
2_575
A
HOH
1147
X
O
HOH
2_575
8.3
A
HOH
1144
X
O
HOH
1_555
A
ZN
1003
E
ZN
ZN
2_575
A
HOH
1147
X
O
HOH
2_575
10.5
A
ASP
128
A
OD1
ASP
109
1_555
A
ZN
1001
C
ZN
ZN
4_575
A
ASP
128
A
OD2
ASP
109
1_555
53.9
A
ASP
128
A
OD1
ASP
109
1_555
A
ZN
1001
C
ZN
ZN
4_575
A
HIS
180
A
ND1
HIS
161
1_555
106.7
A
ASP
128
A
OD2
ASP
109
1_555
A
ZN
1001
C
ZN
ZN
4_575
A
HIS
180
A
ND1
HIS
161
1_555
87.3
A
ASP
128
A
OD1
ASP
109
1_555
A
ZN
1001
C
ZN
ZN
4_575
A
GLU
182
A
OE2
GLU
163
1_555
110.4
A
ASP
128
A
OD2
ASP
109
1_555
A
ZN
1001
C
ZN
ZN
4_575
A
GLU
182
A
OE2
GLU
163
1_555
94.7
A
HIS
180
A
ND1
HIS
161
1_555
A
ZN
1001
C
ZN
ZN
4_575
A
GLU
182
A
OE2
GLU
163
1_555
7.4
A
GLU
132
A
OE1
GLU
113
1_555
B
ZN
101
R
ZN
ZN
1_555
B
HIS
17
B
NE2
HIS
19
1_555
105.3
A
GLU
132
A
OE1
GLU
113
1_555
B
ZN
101
R
ZN
ZN
1_555
B
HIS
27
B
ND1
HIS
29
1_555
106.8
B
HIS
17
B
NE2
HIS
19
1_555
B
ZN
101
R
ZN
ZN
1_555
B
HIS
27
B
ND1
HIS
29
1_555
105.6
A
ASP
160
A
OD2
ASP
141
1_555
A
ZN
1002
D
ZN
ZN
1_555
A
ASP
201
A
OD2
ASP
182
1_555
106.6
A
HIS
270
A
ND1
HIS
251
1_555
A
ZN
1004
F
ZN
ZN
1_555
A
HOH
1105
X
O
HOH
5_544
107.5
B
CYS
3
B
SG
CYS
5
1_555
B
ZN
105
V
ZN
ZN
1_555
B
ARG
55
B
NH1
ARG
57
1_555
66.1
B
CYS
3
B
SG
CYS
5
1_555
B
ZN
105
V
ZN
ZN
1_555
B
ASP
59
B
OD2
ASP
61
1_555
61.7
B
ARG
55
B
NH1
ARG
57
1_555
B
ZN
105
V
ZN
ZN
1_555
B
ASP
59
B
OD2
ASP
61
1_555
6.0
B
CYS
3
B
SG
CYS
5
1_555
B
ZN
105
V
ZN
ZN
1_555
B
HOH
208
Y
O
HOH
3_555
113.1
B
ARG
55
B
NH1
ARG
57
1_555
B
ZN
105
V
ZN
ZN
1_555
B
HOH
208
Y
O
HOH
3_555
48.3
B
ASP
59
B
OD2
ASP
61
1_555
B
ZN
105
V
ZN
ZN
1_555
B
HOH
208
Y
O
HOH
3_555
53.7
B
SER
20
B
O
SER
22
1_555
B
CA
104
U
CA
CA
1_555
B
GLU
23
B
O
GLU
25
1_555
105.4
B
SER
20
B
O
SER
22
1_555
B
CA
104
U
CA
CA
1_555
B
ASP
25
B
O
ASP
27
1_555
80.2
B
GLU
23
B
O
GLU
25
1_555
B
CA
104
U
CA
CA
1_555
B
ASP
25
B
O
ASP
27
1_555
91.6
B
SER
20
B
O
SER
22
1_555
B
CA
104
U
CA
CA
1_555
B
THR
28
B
O
THR
30
1_555
90.5
B
GLU
23
B
O
GLU
25
1_555
B
CA
104
U
CA
CA
1_555
B
THR
28
B
O
THR
30
1_555
161.1
B
ASP
25
B
O
ASP
27
1_555
B
CA
104
U
CA
CA
1_555
B
THR
28
B
O
THR
30
1_555
81.1
B
SER
20
B
O
SER
22
1_555
B
CA
104
U
CA
CA
1_555
B
GLU
33
B
OE1
GLU
35
1_555
101.3
B
GLU
23
B
O
GLU
25
1_555
B
CA
104
U
CA
CA
1_555
B
GLU
33
B
OE1
GLU
35
1_555
109.5
B
ASP
25
B
O
ASP
27
1_555
B
CA
104
U
CA
CA
1_555
B
GLU
33
B
OE1
GLU
35
1_555
157.3
B
THR
28
B
O
THR
30
1_555
B
CA
104
U
CA
CA
1_555
B
GLU
33
B
OE1
GLU
35
1_555
76.2
B
SER
20
B
O
SER
22
1_555
B
CA
104
U
CA
CA
1_555
B
GLU
33
B
OE2
GLU
35
1_555
78.1
B
GLU
23
B
O
GLU
25
1_555
B
CA
104
U
CA
CA
1_555
B
GLU
33
B
OE2
GLU
35
1_555
71.5
B
ASP
25
B
O
ASP
27
1_555
B
CA
104
U
CA
CA
1_555
B
GLU
33
B
OE2
GLU
35
1_555
147.5
B
THR
28
B
O
THR
30
1_555
B
CA
104
U
CA
CA
1_555
B
GLU
33
B
OE2
GLU
35
1_555
122.7
B
GLU
33
B
OE1
GLU
35
1_555
B
CA
104
U
CA
CA
1_555
B
GLU
33
B
OE2
GLU
35
1_555
52.4
B
SER
20
B
O
SER
22
1_555
B
CA
104
U
CA
CA
1_555
B
HOH
209
Y
O
HOH
1_555
169.0
B
GLU
23
B
O
GLU
25
1_555
B
CA
104
U
CA
CA
1_555
B
HOH
209
Y
O
HOH
1_555
82.7
B
ASP
25
B
O
ASP
27
1_555
B
CA
104
U
CA
CA
1_555
B
HOH
209
Y
O
HOH
1_555
92.4
B
THR
28
B
O
THR
30
1_555
B
CA
104
U
CA
CA
1_555
B
HOH
209
Y
O
HOH
1_555
80.2
B
GLU
33
B
OE1
GLU
35
1_555
B
CA
104
U
CA
CA
1_555
B
HOH
209
Y
O
HOH
1_555
82.4
B
GLU
33
B
OE2
GLU
35
1_555
B
CA
104
U
CA
CA
1_555
B
HOH
209
Y
O
HOH
1_555
111.9
B
ASP
61
B
OD1
ASP
63
1_555
B
CA
103
T
CA
CA
1_555
B
ASN
63
B
OD1
ASN
65
1_555
80.6
B
ASP
61
B
OD1
ASP
63
1_555
B
CA
103
T
CA
CA
1_555
B
ASP
65
B
OD1
ASP
67
1_555
77.2
B
ASN
63
B
OD1
ASN
65
1_555
B
CA
103
T
CA
CA
1_555
B
ASP
65
B
OD1
ASP
67
1_555
78.4
B
ASP
61
B
OD1
ASP
63
1_555
B
CA
103
T
CA
CA
1_555
B
GLU
67
B
O
GLU
69
1_555
88.5
B
ASN
63
B
OD1
ASN
65
1_555
B
CA
103
T
CA
CA
1_555
B
GLU
67
B
O
GLU
69
1_555
157.4
B
ASP
65
B
OD1
ASP
67
1_555
B
CA
103
T
CA
CA
1_555
B
GLU
67
B
O
GLU
69
1_555
79.9
B
ASP
61
B
OD1
ASP
63
1_555
B
CA
103
T
CA
CA
1_555
B
GLU
72
B
OE1
GLU
74
1_555
124.0
B
ASN
63
B
OD1
ASN
65
1_555
B
CA
103
T
CA
CA
1_555
B
GLU
72
B
OE1
GLU
74
1_555
122.1
B
ASP
65
B
OD1
ASP
67
1_555
B
CA
103
T
CA
CA
1_555
B
GLU
72
B
OE1
GLU
74
1_555
150.4
B
GLU
67
B
O
GLU
69
1_555
B
CA
103
T
CA
CA
1_555
B
GLU
72
B
OE1
GLU
74
1_555
80.4
B
ASP
61
B
OD1
ASP
63
1_555
B
CA
103
T
CA
CA
1_555
B
GLU
72
B
OE2
GLU
74
1_555
89.4
B
ASN
63
B
OD1
ASN
65
1_555
B
CA
103
T
CA
CA
1_555
B
GLU
72
B
OE2
GLU
74
1_555
81.8
B
ASP
65
B
OD1
ASP
67
1_555
B
CA
103
T
CA
CA
1_555
B
GLU
72
B
OE2
GLU
74
1_555
157.6
B
GLU
67
B
O
GLU
69
1_555
B
CA
103
T
CA
CA
1_555
B
GLU
72
B
OE2
GLU
74
1_555
118.1
B
GLU
72
B
OE1
GLU
74
1_555
B
CA
103
T
CA
CA
1_555
B
GLU
72
B
OE2
GLU
74
1_555
51.6
B
ASP
61
B
OD1
ASP
63
1_555
B
CA
103
T
CA
CA
1_555
B
HOH
223
Y
O
HOH
1_555
159.0
B
ASN
63
B
OD1
ASN
65
1_555
B
CA
103
T
CA
CA
1_555
B
HOH
223
Y
O
HOH
1_555
85.8
B
ASP
65
B
OD1
ASP
67
1_555
B
CA
103
T
CA
CA
1_555
B
HOH
223
Y
O
HOH
1_555
84.4
B
GLU
67
B
O
GLU
69
1_555
B
CA
103
T
CA
CA
1_555
B
HOH
223
Y
O
HOH
1_555
98.3
B
GLU
72
B
OE1
GLU
74
1_555
B
CA
103
T
CA
CA
1_555
B
HOH
223
Y
O
HOH
1_555
76.9
B
GLU
72
B
OE2
GLU
74
1_555
B
CA
103
T
CA
CA
1_555
B
HOH
223
Y
O
HOH
1_555
104.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_575
-x,-y+2,z
crystal symmetry operation
0.0000000000
226.7800000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_575
x,-y+2,-z
crystal symmetry operation
0.0000000000
226.7800000000
0.0000000000
A
N
ILE
26
A
N
ILE
7
A
O
ARG
114
A
O
ARG
95
A
O
THR
109
A
O
THR
90
A
N
ALA
101
A
N
ALA
82
A
O
ARG
98
A
O
ARG
79
A
N
LYS
52
A
N
LYS
33
A
N
TRP
51
A
N
TRP
32
A
O
LEU
64
A
O
LEU
45
A
N
LEU
34
A
N
LEU
15
A
O
LEU
86
A
O
LEU
67
A
O
PHE
85
A
O
PHE
66
A
N
ARG
77
A
N
ARG
58
A
N
VAL
127
A
N
VAL
108
A
O
THR
143
A
O
THR
124
A
N
SER
146
A
N
SER
127
A
O
LEU
188
A
O
LEU
169
A
O
THR
187
A
O
THR
168
A
N
ARG
178
A
N
ARG
159
A
N
LEU
133
A
N
LEU
114
A
O
TRP
230
A
O
TRP
211
A
O
LYS
162
A
O
LYS
143
A
N
LEU
159
A
N
LEU
140
A
N
HIS
158
A
N
HIS
139
A
O
SER
207
A
O
SER
188
A
N
PHE
210
A
N
PHE
191
A
O
LEU
220
A
O
LEU
201
A
N
GLN
239
A
N
GLN
220
A
O
GLU
260
A
O
GLU
241
A
N
VAL
255
A
N
VAL
236
A
O
LEU
288
A
O
LEU
269
A
N
VAL
249
A
N
VAL
230
A
O
SER
319
A
O
SER
300
A
O
VAL
316
A
O
VAL
297
A
N
TYR
299
A
N
TYR
280
A
O
SER
300
A
O
SER
281
A
N
MET
272
A
N
MET
253
A
N
LYS
273
A
N
LYS
254
A
O
VAL
276
A
O
VAL
257
A
N
VAL
249
A
N
VAL
230
A
O
SER
319
A
O
SER
300
A
O
VAL
316
A
O
VAL
297
A
N
TYR
299
A
N
TYR
280
A
N
ALA
303
A
N
ALA
284
A
O
GLN
311
A
O
GLN
292
1
A
GLY
20
A
GLY
1
1
Y
1
A
GLU
322
A
GLU
303
1
Y
1
A
PRO
323
A
PRO
304
1
Y
1
B
GLY
-1
B
GLY
1
1
Y
1
B
ALA
0
B
ALA
2
1
Y
1
B
MET
1
B
MET
3
1
Y
1
A
ASN
167
55.54
17.59
1
A
LYS
169
61.10
-135.11
1
A
PRO
279
-69.88
70.77
1
A
SER
307
76.00
-3.80
165.910
52.4800
17.590
0.2067
0.1866
0.1877
2.3000
27.2420
1355
25709
27064
5.0100
98.0000
0.8478
0.2500
random selection
1
FREE R-VALUE
2.000
MOLECULAR REPLACEMENT
21.9700
0.9000
1.1100
4LP5, 1K96
ML
FLAT BULK SOLVENT MODEL
2.3000
27.2420
186
3202
56.75
46.00
42
0
2974
0.004
3081
0.875
4182
0.059
463
0.003
557
14.740
1170
0.2752
0.2279
131
2520
97.0000
0.2596
0.2188
127
2507
97.0000
0.2750
0.2065
135
2509
97.0000
0.2440
0.2022
131
2544
98.0000
0.2747
0.2045
136
2528
98.0000
0.2344
0.2181
124
2580
99.0000
0.1942
0.1944
145
2577
99.0000
0.1987
0.1731
145
2624
99.0000
0.1606
0.1490
143
2623
99.0000
0.1999
0.1934
27.2439
138
2697
97.0000
44.570
0.998
2.300
35
4P2Y
27554
2
-3.000
0.074
0.080
1.032
1
15.560
7.0
99.700
0.937
0.435
2.300
2.360
4.120
14865
2048
2048
0.469
1
7.2
0
100.000
0.954
0.346
2.360
2.430
5.070
15219
2092
2092
0.373
1
0
100.000
0.972
0.283
2.430
2.500
6.170
13871
1905
1905
0.305
1
0
100.000
0.980
0.214
2.500
2.600
7.980
16993
2343
2343
0.230
1
0
100.000
0.987
0.178
2.600
2.700
9.730
14774
2036
2036
0.191
1
0
100.000
0.991
0.139
2.700
2.850
12.320
18266
2537
2537
0.150
1
0
100.000
0.993
0.112
2.850
3.000
14.880
14673
2042
2042
0.121
1
0
100.000
0.995
0.092
3.000
3.200
17.900
15537
2191
2189
0.099
1
0
99.900
0.996
0.073
3.200
3.500
21.800
16822
2421
2421
0.079
1
0
100.000
0.997
0.065
3.500
4.000
24.470
17456
2586
2584
0.071
1
0
99.900
0.997
0.059
4.000
4.500
26.300
10505
1581
1580
0.064
1
0
99.900
0.998
0.055
4.500
5.000
26.970
6745
1011
1008
0.060
1
0
99.700
0.998
0.053
5.000
5.500
27.190
4686
693
692
0.057
1
0
99.900
0.997
0.055
5.500
7.000
26.720
7175
1086
1083
0.060
1
0
99.700
0.997
0.049
7.000
9.000
27.140
3435
541
536
0.054
1
0
99.100
0.994
0.054
9.000
12.000
26.840
1633
292
278
0.059
1
0
95.200
0.995
0.053
12.000
15.000
25.190
514
108
97
0.059
1
0
89.800
0.991
0.058
15.000
20.000
24.030
268
72
55
0.065
1
0
76.400
0.996
0.062
20.000
17.160
101
57
28
0.070
1
0
49.100
data scaling
XDS
data scaling
XSCALE
data extraction
PDB_EXTRACT
3.14
phasing
PHASER
refinement
PHENIX
(phenix.refine: 1.8.2_1309)
Crystal structure of the human RAGE ectodomain (fragment VC1C2) in complex with mouse S100A6
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
4
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
3
N
N
4
N
N
6
N
N
6
N
N
3
N
N
5
N
N
7
N
N
7
N
N
The biological assembly is a heterotetramer generated from the heterodimer in the asymmetric unit by the operation: -x, y, -z.
A
GLY
90
A
GLY
71
HELX_P
A
ASP
93
A
ASP
74
5
AA1
4
A
GLY
292
A
GLY
273
HELX_P
A
GLN
296
A
GLN
277
5
AA2
5
B
CYS
3
B
CYS
5
HELX_P
B
GLY
21
B
GLY
23
1
AA3
19
B
SER
30
B
SER
32
HELX_P
B
LEU
42
B
LEU
44
1
AA4
13
B
THR
43
B
THR
45
HELX_P
B
SER
46
B
SER
48
5
AA5
4
B
GLN
49
B
GLN
51
HELX_P
B
ASP
61
B
ASP
63
1
AA6
13
B
ASN
69
B
ASN
71
HELX_P
B
LYS
89
B
LYS
91
1
AA7
21
disulf
2.037
A
CYS
38
A
SG
CYS
19
1_555
A
CYS
99
A
SG
CYS
80
1_555
disulf
2.038
A
CYS
144
A
SG
CYS
125
1_555
A
CYS
208
A
SG
CYS
189
1_555
disulf
2.032
A
CYS
259
A
SG
CYS
240
1_555
A
CYS
301
A
SG
CYS
282
1_555
metalc
2.285
A
GLU
32
A
OE1
GLU
13
1_555
A
ZN
1003
E
ZN
ZN
2_575
metalc
2.588
A
ASP
128
A
OD1
ASP
109
1_555
A
ZN
1001
C
ZN
ZN
4_575
metalc
2.191
A
ASP
128
A
OD2
ASP
109
1_555
A
ZN
1001
C
ZN
ZN
4_575
metalc
2.001
A
GLU
132
A
OE1
GLU
113
1_555
B
ZN
101
R
ZN
ZN
1_555
metalc
1.983
A
ASP
160
A
OD2
ASP
141
1_555
A
ZN
1002
D
ZN
ZN
1_555
metalc
2.021
A
HIS
180
A
ND1
HIS
161
1_555
A
ZN
1001
C
ZN
ZN
1_555
metalc
2.015
A
GLU
182
A
OE2
GLU
163
1_555
A
ZN
1001
C
ZN
ZN
1_555
metalc
1.988
A
ASP
201
A
OD2
ASP
182
1_555
A
ZN
1002
D
ZN
ZN
1_555
metalc
2.039
A
HIS
217
A
ND1
HIS
198
1_555
A
ZN
1003
E
ZN
ZN
1_555
metalc
2.033
A
HIS
270
A
ND1
HIS
251
1_555
A
ZN
1004
F
ZN
ZN
1_555
metalc
2.115
A
ZN
1003
E
ZN
ZN
1_555
A
HOH
1144
X
O
HOH
1_555
metalc
2.121
A
ZN
1003
E
ZN
ZN
1_555
A
HOH
1147
X
O
HOH
2_575
metalc
2.099
A
ZN
1004
F
ZN
ZN
1_555
A
HOH
1105
X
O
HOH
5_544
metalc
2.350
B
CYS
3
B
SG
CYS
5
1_555
B
ZN
105
V
ZN
ZN
1_555
metalc
2.027
B
HIS
17
B
NE2
HIS
19
1_555
B
ZN
101
R
ZN
ZN
1_555
metalc
2.342
B
SER
20
B
O
SER
22
1_555
B
CA
104
U
CA
CA
1_555
metalc
2.409
B
GLU
23
B
O
GLU
25
1_555
B
CA
104
U
CA
CA
1_555
metalc
2.411
B
ASP
25
B
O
ASP
27
1_555
B
CA
104
U
CA
CA
1_555
metalc
2.032
B
HIS
27
B
ND1
HIS
29
1_555
B
ZN
101
R
ZN
ZN
1_555
metalc
2.474
B
THR
28
B
O
THR
30
1_555
B
CA
104
U
CA
CA
1_555
metalc
2.394
B
GLU
33
B
OE1
GLU
35
1_555
B
CA
104
U
CA
CA
1_555
metalc
2.548
B
GLU
33
B
OE2
GLU
35
1_555
B
CA
104
U
CA
CA
1_555
metalc
2.281
B
ARG
55
B
NH1
ARG
57
1_555
B
ZN
105
V
ZN
ZN
3_555
metalc
2.316
B
ASP
59
B
OD2
ASP
61
1_555
B
ZN
105
V
ZN
ZN
3_555
metalc
2.306
B
ASP
61
B
OD1
ASP
63
1_555
B
CA
103
T
CA
CA
1_555
metalc
2.361
B
ASN
63
B
OD1
ASN
65
1_555
B
CA
103
T
CA
CA
1_555
metalc
2.487
B
ASP
65
B
OD1
ASP
67
1_555
B
CA
103
T
CA
CA
1_555
metalc
2.254
B
GLU
67
B
O
GLU
69
1_555
B
CA
103
T
CA
CA
1_555
metalc
2.467
B
GLU
72
B
OE1
GLU
74
1_555
B
CA
103
T
CA
CA
1_555
metalc
2.546
B
GLU
72
B
OE2
GLU
74
1_555
B
CA
103
T
CA
CA
1_555
metalc
2.403
B
CA
103
T
CA
CA
1_555
B
HOH
223
Y
O
HOH
1_555
metalc
2.293
B
CA
104
U
CA
CA
1_555
B
HOH
209
Y
O
HOH
1_555
metalc
2.086
B
ZN
105
V
ZN
ZN
1_555
B
HOH
208
Y
O
HOH
3_555
SIGNALING PROTEIN
signaling complex, pattern recognition receptor, dimerization, EF-hand calcium binding protein, SIGNALING PROTEIN
A
PRO
45
A
PRO
26
1
A
PRO
46
A
PRO
27
5.61
A
TYR
150
A
TYR
131
1
A
PRO
151
A
PRO
132
-8.41
A
LYS
169
A
LYS
150
1
A
GLY
170
A
GLY
151
-6.94
A
LEU
214
A
LEU
195
1
A
PRO
215
A
PRO
196
-4.86
A
GLU
243
A
GLU
224
1
A
PRO
244
A
PRO
225
2.96
RAGE_HUMAN
UNP
1
23
Q15109
AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAM
NRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPE
TGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVP
AQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP
S10A6_MOUSE
UNP
2
1
P14069
MACPLDQAIGLLVAIFHKYSGKEGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMDDLDRNKDQEVNFQEYVAFLGAL
ALIYNEALK
23
323
4P2Y
23
323
Q15109
A
1
4
304
1
89
4P2Y
1
89
P14069
B
2
3
91
1
expression tag
GLY
20
4P2Y
A
Q15109
UNP
1
1
expression tag
ALA
21
4P2Y
A
Q15109
UNP
2
1
expression tag
MET
22
4P2Y
A
Q15109
UNP
3
2
expression tag
GLY
-1
4P2Y
B
P14069
UNP
1
2
expression tag
ALA
0
4P2Y
B
P14069
UNP
2
5
3
4
2
4
3
5
4
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
24
A
GLN
5
A
ARG
29
A
ARG
10
A
GLU
108
A
GLU
89
A
TYR
118
A
TYR
99
A
GLY
95
A
GLY
76
A
MET
102
A
MET
83
A
ARG
48
A
ARG
29
A
THR
55
A
THR
36
A
LYS
62
A
LYS
43
A
LEU
64
A
LEU
45
A
LEU
34
A
LEU
15
A
LEU
36
A
LEU
17
A
LEU
84
A
LEU
65
A
LEU
86
A
LEU
67
A
ARG
77
A
ARG
58
A
VAL
78
A
VAL
59
A
GLU
125
A
GLU
106
A
VAL
127
A
VAL
108
A
ASN
139
A
ASN
120
A
SER
149
A
SER
130
A
PHE
186
A
PHE
167
A
VAL
194
A
VAL
175
A
VAL
171
A
VAL
152
A
ARG
179
A
ARG
160
A
GLU
132
A
GLU
113
A
THR
134
A
THR
115
A
ARG
228
A
ARG
209
A
TRP
230
A
TRP
211
A
LYS
162
A
LYS
143
A
LEU
164
A
LEU
145
A
THR
154
A
THR
135
A
LEU
159
A
LEU
140
A
PHE
206
A
PHE
187
A
SER
211
A
SER
192
A
LEU
220
A
LEU
201
A
ARG
221
A
ARG
202
A
GLN
239
A
GLN
220
A
GLU
243
A
GLU
224
A
VAL
255
A
VAL
236
A
GLU
260
A
GLU
241
A
VAL
285
A
VAL
266
A
LEU
288
A
LEU
269
A
ALA
248
A
ALA
229
A
VAL
249
A
VAL
230
A
VAL
316
A
VAL
297
A
ILE
320
A
ILE
301
A
GLY
297
A
GLY
278
A
HIS
305
A
HIS
286
A
GLN
268
A
GLN
249
A
LYS
273
A
LYS
254
A
VAL
276
A
VAL
257
A
PRO
277
A
PRO
258
A
ALA
248
A
ALA
229
A
VAL
249
A
VAL
230
A
VAL
316
A
VAL
297
A
ILE
320
A
ILE
301
A
GLY
297
A
GLY
278
A
HIS
305
A
HIS
286
A
HIS
308
A
HIS
289
A
GLU
312
A
GLU
293
binding site for residue ZN A 1001
A
ZN
1001
Software
3
binding site for residue ZN A 1002
A
ZN
1002
Software
4
binding site for residue ZN A 1003
A
ZN
1003
Software
4
binding site for residue ZN A 1004
A
ZN
1004
Software
3
binding site for residue CL A 1006
A
CL
1006
Software
5
binding site for residue CL A 1007
A
CL
1007
Software
4
binding site for residue CL A 1008
A
CL
1008
Software
4
binding site for residue CL A 1009
A
CL
1009
Software
2
binding site for residue ACT A 1010
A
ACT
1010
Software
4
binding site for residue ACT A 1011
A
ACT
1011
Software
5
binding site for residue ACT A 1012
A
ACT
1012
Software
3
binding site for residue ACT A 1013
A
ACT
1013
Software
5
binding site for residue ACT A 1014
A
ACT
1014
Software
4
binding site for residue ZN B 101
B
ZN
101
Software
4
binding site for residue CL B 102
B
CL
102
Software
1
binding site for residue CA B 103
B
CA
103
Software
6
binding site for residue CA B 104
B
CA
104
Software
6
binding site for residue ZN B 105
B
ZN
105
Software
4
binding site for residue ACT B 106
B
ACT
106
Software
1
A
ASP
128
A
ASP
109
3
4_575
A
HIS
180
A
HIS
161
3
1_555
A
GLU
182
A
GLU
163
3
1_555
A
ASP
160
A
ASP
141
4
1_555
A
ASP
201
A
ASP
182
4
1_555
A
CL
1007
I
CL
4
1_555
A
CL
1008
J
CL
4
1_555
A
GLU
32
A
GLU
13
4
2_575
A
HIS
217
A
HIS
198
4
1_555
A
HOH
1144
X
HOH
4
1_555
A
HOH
1147
X
HOH
4
2_575
A
HIS
270
A
HIS
251
3
1_555
A
CL
1009
K
CL
3
1_555
A
HOH
1105
X
HOH
3
5_544
A
GLU
132
A
GLU
113
5
1_555
A
ARG
228
A
ARG
209
5
1_555
B
HIS
17
B
HIS
19
5
1_555
B
HIS
27
B
HIS
29
5
1_555
B
ZN
101
R
ZN
5
1_555
A
ASP
160
A
ASP
141
4
1_555
A
ASP
201
A
ASP
182
4
1_555
A
ZN
1002
D
ZN
4
1_555
A
CL
1008
J
CL
4
1_555
A
ASP
160
A
ASP
141
4
1_555
A
ASP
201
A
ASP
182
4
1_555
A
ZN
1002
D
ZN
4
1_555
A
CL
1007
I
CL
4
1_555
A
HIS
270
A
HIS
251
2
1_555
A
ZN
1004
F
ZN
2
1_555
A
THR
55
A
THR
36
4
1_555
A
ARG
57
A
ARG
38
4
1_555
A
TRP
72
A
TRP
53
4
1_555
A
ASP
93
A
ASP
74
4
1_555
A
ASP
73
A
ASP
54
5
1_555
A
HOH
1101
X
HOH
5
1_555
B
ASP
65
B
ASP
67
5
4_575
B
GLN
66
B
GLN
68
5
4_575
B
GLU
67
B
GLU
69
5
4_575
A
ARG
77
A
ARG
58
3
1_555
A
HOH
1102
X
HOH
3
1_555
A
HOH
1105
X
HOH
3
1_555
A
ARG
228
A
ARG
209
5
1_555
A
HOH
1249
X
HOH
5
1_555
B
ASN
69
B
ASN
71
5
1_555
B
GLN
71
B
GLN
73
5
1_555
B
HOH
218
Y
HOH
5
1_555
A
THR
154
A
THR
135
4
1_555
A
LEU
155
A
LEU
136
4
1_555
A
GLU
175
A
GLU
156
4
1_555
A
HOH
1251
X
HOH
4
1_555
A
GLU
132
A
GLU
113
4
1_555
A
CL
1006
H
CL
4
1_555
B
HIS
17
B
HIS
19
4
1_555
B
HIS
27
B
HIS
29
4
1_555
B
ILE
44
B
ILE
46
1
3_555
B
ASP
61
B
ASP
63
6
1_555
B
ASN
63
B
ASN
65
6
1_555
B
ASP
65
B
ASP
67
6
1_555
B
GLU
67
B
GLU
69
6
1_555
B
GLU
72
B
GLU
74
6
1_555
B
HOH
223
Y
HOH
6
1_555
B
SER
20
B
SER
22
6
1_555
B
GLU
23
B
GLU
25
6
1_555
B
ASP
25
B
ASP
27
6
1_555
B
THR
28
B
THR
30
6
1_555
B
GLU
33
B
GLU
35
6
1_555
B
HOH
209
Y
HOH
6
1_555
B
CYS
3
B
CYS
5
4
1_555
B
ARG
55
B
ARG
57
4
3_555
B
ASP
59
B
ASP
61
4
3_555
B
HOH
208
Y
HOH
4
3_555
B
ASP
50
B
ASP
52
1
1_555
23
I 2 2 2