0.014420 0.000000 0.000000 0.000000 0.012013 0.000000 0.000000 0.000000 0.008388 0.000000 0.000000 0.000000 Yatime, L. Schatz-Jakobsen, J.A. Larsen, C. Andersen, G.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 32 90.000 90.000 90.000 69.350 83.240 119.220 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N O N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 R C N 309 N O N 310 N C N 311 N O N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 N C Y 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C N 332 N O N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N C N 351 N C N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub N 322 N sing Y 323 N doub N 324 N sing Y 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing US Acta Crystallogr. D Biol. Crystallogr. ABCRE6 1399-0047 70 1704 1717 10.1107/S139900471400844X 24914981 Structural and functional characterization of human and murine C5a anaphylatoxins. 2014 10.2210/pdb4p39/pdb pdb_00004p39 100 1 PIXEL 2012-11-24 PSI PILATUS 6M Si(111) SINGLE WAVELENGTH x-ray 1 1.000 1.0 X06SA SLS 1.000 SYNCHROTRON SLS BEAMLINE X06SA 8365.678 Complement C5 UNP residues 678-743 C704R 4 man polymer 18.015 water 22 nat water C3 and PZP-like alpha-2-macroglobulin domain-containing protein 4 no no GAGAAGSTLQKKIEEIAAKYKHSVVKKCCYDGARVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISFKRS GAGAAGSTLQKKIEEIAAKYKHSVVKKCCYDGARVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISFKRS A,B,C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 77 C5, CPAMD4 9606 Homo sapiens 562 Escherichia coli Shuffle T7 Express plasmid Biological sequence pET32a 1 2.57 52.16 VAPOR DIFFUSION, HANGING DROP 5.6 20% 2-propanol, 20% PEG 4000, 0.1 M Na citrate pH 5.6 277 citation entity_src_gen pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list software chem_comp_atom chem_comp_bond database_2 diffrn_radiation_wavelength pdbx_initial_refinement_model refine_hist repository Initial release Database references Database references Derived calculations Non-polymer description Other Refinement description Source and taxonomy Structure summary Data collection Database references Refinement description 1 0 2014-06-11 1 1 2014-06-25 2 0 2017-09-27 2 1 2023-09-27 _chem_comp.formula _chem_comp.id _chem_comp.name _citation.country _citation.journal_id_ASTM _entity_src_gen.pdbx_alt_source_flag _pdbx_database_status.pdb_format_compatible _pdbx_struct_assembly.oligomeric_details _pdbx_struct_oper_list.symmetry_operation _database_2.pdbx_DOI _database_2.pdbx_database_accession _refine_hist.pdbx_number_atoms_nucleic_acid _refine_hist.pdbx_number_atoms_protein 3HQA contains the structure of the desarginated version of the human C5a anaphylatoxin 3HQB contains the structure of the desarginated version of the human C5a anaphylatoxin N RCSB Y RCSB 2014-03-06 REL REL HOH water 3HQA PDB experimental model HOH 11 2 HOH HOH 801 A HOH 6 2 HOH HOH 802 A HOH 4 2 HOH HOH 803 A HOH 2 2 HOH HOH 804 A HOH 7 2 HOH HOH 805 A HOH 8 2 HOH HOH 806 A HOH 12 2 HOH HOH 807 A HOH 14 2 HOH HOH 808 A HOH 20 2 HOH HOH 809 A HOH 21 2 HOH HOH 810 A HOH 22 2 HOH HOH 811 A HOH 1 2 HOH HOH 801 B HOH 3 2 HOH HOH 802 B HOH 5 2 HOH HOH 803 B HOH 10 2 HOH HOH 804 B HOH 16 2 HOH HOH 801 C HOH 17 2 HOH HOH 802 C HOH 15 2 HOH HOH 803 C HOH 9 2 HOH HOH 801 D HOH 18 2 HOH HOH 802 D HOH 13 2 HOH HOH 803 D HOH 19 2 HOH HOH 804 D n 1 671 A n 2 672 A n 3 673 A n 4 674 A n 5 675 A n 6 676 A SER 677 n 7 SER 677 A THR 678 n 8 THR 678 A LEU 679 n 9 LEU 679 A GLN 680 n 10 GLN 680 A LYS 681 n 11 LYS 681 A LYS 682 n 12 LYS 682 A ILE 683 n 13 ILE 683 A GLU 684 n 14 GLU 684 A GLU 685 n 15 GLU 685 A ILE 686 n 16 ILE 686 A ALA 687 n 17 ALA 687 A ALA 688 n 18 ALA 688 A LYS 689 n 19 LYS 689 A TYR 690 n 20 TYR 690 A LYS 691 n 21 LYS 691 A HIS 692 n 22 HIS 692 A SER 693 n 23 SER 693 A VAL 694 n 24 VAL 694 A VAL 695 n 25 VAL 695 A LYS 696 n 26 LYS 696 A LYS 697 n 27 LYS 697 A CYS 698 n 28 CYS 698 A CYS 699 n 29 CYS 699 A TYR 700 n 30 TYR 700 A ASP 701 n 31 ASP 701 A GLY 702 n 32 GLY 702 A ALA 703 n 33 ALA 703 A ARG 704 n 34 ARG 704 A VAL 705 n 35 VAL 705 A ASN 706 n 36 ASN 706 A ASN 707 n 37 ASN 707 A ASP 708 n 38 ASP 708 A GLU 709 n 39 GLU 709 A THR 710 n 40 THR 710 A CYS 711 n 41 CYS 711 A GLU 712 n 42 GLU 712 A GLN 713 n 43 GLN 713 A ARG 714 n 44 ARG 714 A ALA 715 n 45 ALA 715 A ALA 716 n 46 ALA 716 A ARG 717 n 47 ARG 717 A ILE 718 n 48 ILE 718 A SER 719 n 49 SER 719 A LEU 720 n 50 LEU 720 A GLY 721 n 51 GLY 721 A PRO 722 n 52 PRO 722 A ARG 723 n 53 ARG 723 A CYS 724 n 54 CYS 724 A ILE 725 n 55 ILE 725 A LYS 726 n 56 LYS 726 A ALA 727 n 57 ALA 727 A PHE 728 n 58 PHE 728 A THR 729 n 59 THR 729 A GLU 730 n 60 GLU 730 A CYS 731 n 61 CYS 731 A CYS 732 n 62 CYS 732 A VAL 733 n 63 VAL 733 A VAL 734 n 64 VAL 734 A ALA 735 n 65 ALA 735 A SER 736 n 66 SER 736 A GLN 737 n 67 GLN 737 A LEU 738 n 68 LEU 738 A ARG 739 n 69 ARG 739 A ALA 740 n 70 ALA 740 A ASN 741 n 71 ASN 741 A ILE 742 n 72 ILE 742 A SER 743 n 73 SER 743 A PHE 744 n 74 PHE 744 A LYS 745 n 75 LYS 745 A n 76 746 A n 77 747 A n 1 671 B n 2 672 B n 3 673 B n 4 674 B n 5 675 B n 6 676 B SER 677 n 7 SER 677 B THR 678 n 8 THR 678 B LEU 679 n 9 LEU 679 B GLN 680 n 10 GLN 680 B LYS 681 n 11 LYS 681 B LYS 682 n 12 LYS 682 B ILE 683 n 13 ILE 683 B GLU 684 n 14 GLU 684 B GLU 685 n 15 GLU 685 B ILE 686 n 16 ILE 686 B ALA 687 n 17 ALA 687 B ALA 688 n 18 ALA 688 B LYS 689 n 19 LYS 689 B TYR 690 n 20 TYR 690 B LYS 691 n 21 LYS 691 B HIS 692 n 22 HIS 692 B SER 693 n 23 SER 693 B VAL 694 n 24 VAL 694 B VAL 695 n 25 VAL 695 B LYS 696 n 26 LYS 696 B LYS 697 n 27 LYS 697 B CYS 698 n 28 CYS 698 B CYS 699 n 29 CYS 699 B TYR 700 n 30 TYR 700 B ASP 701 n 31 ASP 701 B GLY 702 n 32 GLY 702 B ALA 703 n 33 ALA 703 B ARG 704 n 34 ARG 704 B VAL 705 n 35 VAL 705 B ASN 706 n 36 ASN 706 B ASN 707 n 37 ASN 707 B ASP 708 n 38 ASP 708 B GLU 709 n 39 GLU 709 B THR 710 n 40 THR 710 B CYS 711 n 41 CYS 711 B GLU 712 n 42 GLU 712 B GLN 713 n 43 GLN 713 B ARG 714 n 44 ARG 714 B ALA 715 n 45 ALA 715 B ALA 716 n 46 ALA 716 B ARG 717 n 47 ARG 717 B ILE 718 n 48 ILE 718 B SER 719 n 49 SER 719 B LEU 720 n 50 LEU 720 B GLY 721 n 51 GLY 721 B PRO 722 n 52 PRO 722 B ARG 723 n 53 ARG 723 B CYS 724 n 54 CYS 724 B ILE 725 n 55 ILE 725 B LYS 726 n 56 LYS 726 B ALA 727 n 57 ALA 727 B PHE 728 n 58 PHE 728 B THR 729 n 59 THR 729 B GLU 730 n 60 GLU 730 B CYS 731 n 61 CYS 731 B CYS 732 n 62 CYS 732 B VAL 733 n 63 VAL 733 B VAL 734 n 64 VAL 734 B ALA 735 n 65 ALA 735 B SER 736 n 66 SER 736 B GLN 737 n 67 GLN 737 B LEU 738 n 68 LEU 738 B ARG 739 n 69 ARG 739 B ALA 740 n 70 ALA 740 B ASN 741 n 71 ASN 741 B ILE 742 n 72 ILE 742 B SER 743 n 73 SER 743 B PHE 744 n 74 PHE 744 B LYS 745 n 75 LYS 745 B n 76 746 B n 77 747 B n 1 671 C n 2 672 C n 3 673 C n 4 674 C n 5 675 C n 6 676 C n 7 677 C THR 678 n 8 THR 678 C LEU 679 n 9 LEU 679 C GLN 680 n 10 GLN 680 C LYS 681 n 11 LYS 681 C LYS 682 n 12 LYS 682 C ILE 683 n 13 ILE 683 C GLU 684 n 14 GLU 684 C GLU 685 n 15 GLU 685 C ILE 686 n 16 ILE 686 C ALA 687 n 17 ALA 687 C ALA 688 n 18 ALA 688 C LYS 689 n 19 LYS 689 C TYR 690 n 20 TYR 690 C LYS 691 n 21 LYS 691 C HIS 692 n 22 HIS 692 C SER 693 n 23 SER 693 C VAL 694 n 24 VAL 694 C VAL 695 n 25 VAL 695 C LYS 696 n 26 LYS 696 C LYS 697 n 27 LYS 697 C CYS 698 n 28 CYS 698 C CYS 699 n 29 CYS 699 C TYR 700 n 30 TYR 700 C ASP 701 n 31 ASP 701 C GLY 702 n 32 GLY 702 C ALA 703 n 33 ALA 703 C ARG 704 n 34 ARG 704 C VAL 705 n 35 VAL 705 C ASN 706 n 36 ASN 706 C ASN 707 n 37 ASN 707 C ASP 708 n 38 ASP 708 C GLU 709 n 39 GLU 709 C THR 710 n 40 THR 710 C CYS 711 n 41 CYS 711 C GLU 712 n 42 GLU 712 C GLN 713 n 43 GLN 713 C ARG 714 n 44 ARG 714 C ALA 715 n 45 ALA 715 C ALA 716 n 46 ALA 716 C ARG 717 n 47 ARG 717 C ILE 718 n 48 ILE 718 C SER 719 n 49 SER 719 C LEU 720 n 50 LEU 720 C GLY 721 n 51 GLY 721 C PRO 722 n 52 PRO 722 C ARG 723 n 53 ARG 723 C CYS 724 n 54 CYS 724 C ILE 725 n 55 ILE 725 C LYS 726 n 56 LYS 726 C ALA 727 n 57 ALA 727 C PHE 728 n 58 PHE 728 C THR 729 n 59 THR 729 C GLU 730 n 60 GLU 730 C CYS 731 n 61 CYS 731 C CYS 732 n 62 CYS 732 C VAL 733 n 63 VAL 733 C VAL 734 n 64 VAL 734 C ALA 735 n 65 ALA 735 C SER 736 n 66 SER 736 C GLN 737 n 67 GLN 737 C LEU 738 n 68 LEU 738 C ARG 739 n 69 ARG 739 C ALA 740 n 70 ALA 740 C ASN 741 n 71 ASN 741 C ILE 742 n 72 ILE 742 C SER 743 n 73 SER 743 C PHE 744 n 74 PHE 744 C LYS 745 n 75 LYS 745 C ARG 746 n 76 ARG 746 C n 77 747 C n 1 671 D n 2 672 D n 3 673 D n 4 674 D n 5 675 D n 6 676 D n 7 677 D THR 678 n 8 THR 678 D LEU 679 n 9 LEU 679 D GLN 680 n 10 GLN 680 D LYS 681 n 11 LYS 681 D LYS 682 n 12 LYS 682 D ILE 683 n 13 ILE 683 D GLU 684 n 14 GLU 684 D GLU 685 n 15 GLU 685 D ILE 686 n 16 ILE 686 D ALA 687 n 17 ALA 687 D ALA 688 n 18 ALA 688 D LYS 689 n 19 LYS 689 D TYR 690 n 20 TYR 690 D LYS 691 n 21 LYS 691 D HIS 692 n 22 HIS 692 D SER 693 n 23 SER 693 D VAL 694 n 24 VAL 694 D VAL 695 n 25 VAL 695 D LYS 696 n 26 LYS 696 D LYS 697 n 27 LYS 697 D CYS 698 n 28 CYS 698 D CYS 699 n 29 CYS 699 D TYR 700 n 30 TYR 700 D ASP 701 n 31 ASP 701 D GLY 702 n 32 GLY 702 D ALA 703 n 33 ALA 703 D ARG 704 n 34 ARG 704 D VAL 705 n 35 VAL 705 D ASN 706 n 36 ASN 706 D ASN 707 n 37 ASN 707 D ASP 708 n 38 ASP 708 D GLU 709 n 39 GLU 709 D THR 710 n 40 THR 710 D CYS 711 n 41 CYS 711 D GLU 712 n 42 GLU 712 D GLN 713 n 43 GLN 713 D ARG 714 n 44 ARG 714 D ALA 715 n 45 ALA 715 D ALA 716 n 46 ALA 716 D ARG 717 n 47 ARG 717 D ILE 718 n 48 ILE 718 D SER 719 n 49 SER 719 D LEU 720 n 50 LEU 720 D GLY 721 n 51 GLY 721 D PRO 722 n 52 PRO 722 D ARG 723 n 53 ARG 723 D CYS 724 n 54 CYS 724 D ILE 725 n 55 ILE 725 D LYS 726 n 56 LYS 726 D ALA 727 n 57 ALA 727 D PHE 728 n 58 PHE 728 D THR 729 n 59 THR 729 D GLU 730 n 60 GLU 730 D CYS 731 n 61 CYS 731 D CYS 732 n 62 CYS 732 D VAL 733 n 63 VAL 733 D VAL 734 n 64 VAL 734 D ALA 735 n 65 ALA 735 D SER 736 n 66 SER 736 D GLN 737 n 67 GLN 737 D LEU 738 n 68 LEU 738 D ARG 739 n 69 ARG 739 D ALA 740 n 70 ALA 740 D ASN 741 n 71 ASN 741 D ILE 742 n 72 ILE 742 D SER 743 n 73 SER 743 D PHE 744 n 74 PHE 744 D LYS 745 n 75 LYS 745 D n 76 746 D n 77 747 D 9.5832 2.2847 2.6479 0.7369 0.5337 4.0155 -0.1008 0.3520 0.3275 -0.0904 0.1529 0.1299 0.0106 -0.2248 -0.0473 0.2743 -0.0341 0.0461 0.3842 -0.0066 0.4154 refined -18.2692 -4.6303 -33.7529 X-RAY DIFFRACTION 8.9387 -5.6177 -3.4417 8.4399 5.0026 5.5574 -0.4890 -0.3008 -0.4825 0.7267 0.1073 0.4243 0.2041 -0.1518 0.2950 0.3487 0.0305 0.1082 0.3942 0.0419 0.4356 refined -17.6707 -1.3487 -18.9607 X-RAY DIFFRACTION 2.0604 -2.6216 0.6405 9.9639 2.2064 5.5717 0.4349 0.0780 -0.3562 -0.0948 -0.2323 0.4920 -0.0147 -0.0986 -0.1505 0.7570 0.0464 0.0121 0.3935 -0.0564 0.4969 refined 4.0642 -17.8306 -3.6020 X-RAY DIFFRACTION 4.1721 -2.5611 1.5876 9.3821 -1.9964 5.1644 0.2406 0.4335 0.2413 0.0737 -0.4369 -0.8348 0.5099 0.1884 0.2323 0.4288 0.0791 0.0465 0.3797 0.0601 0.3627 refined -29.7003 -22.5699 -10.1950 X-RAY DIFFRACTION A 677 A 745 X-RAY DIFFRACTION 1 chain A B 677 B 745 X-RAY DIFFRACTION 2 chain B C 678 C 746 X-RAY DIFFRACTION 3 chain C D 678 D 745 X-RAY DIFFRACTION 4 chain D author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric software_defined_assembly PISA 4 tetrameric software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 2 dimeric 4210 -42 19290 1460 -16 10210 1570 -16 10260 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 3_454 -x-1,y,-z-1/2 crystal symmetry operation -69.3500000000 0.0000000000 -59.6100000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 5_455 x-1/2,y+1/2,z crystal symmetry operation -34.6750000000 41.6200000000 0.0000000000 1 A HOH 803 E HOH 1 A GLY 671 A GLY 1 1 Y 1 A ALA 672 A ALA 2 1 Y 1 A GLY 673 A GLY 3 1 Y 1 A ALA 674 A ALA 4 1 Y 1 A ALA 675 A ALA 5 1 Y 1 A GLY 676 A GLY 6 1 Y 1 A ARG 746 A ARG 76 1 Y 1 A SER 747 A SER 77 1 Y 1 B GLY 671 B GLY 1 1 Y 1 B ALA 672 B ALA 2 1 Y 1 B GLY 673 B GLY 3 1 Y 1 B ALA 674 B ALA 4 1 Y 1 B ALA 675 B ALA 5 1 Y 1 B GLY 676 B GLY 6 1 Y 1 B ARG 746 B ARG 76 1 Y 1 B SER 747 B SER 77 1 Y 1 C GLY 671 C GLY 1 1 Y 1 C ALA 672 C ALA 2 1 Y 1 C GLY 673 C GLY 3 1 Y 1 C ALA 674 C ALA 4 1 Y 1 C ALA 675 C ALA 5 1 Y 1 C GLY 676 C GLY 6 1 Y 1 C SER 677 C SER 7 1 Y 1 C SER 747 C SER 77 1 Y 1 D GLY 671 D GLY 1 1 Y 1 D ALA 672 D ALA 2 1 Y 1 D GLY 673 D GLY 3 1 Y 1 D ALA 674 D ALA 4 1 Y 1 D ALA 675 D ALA 5 1 Y 1 D GLY 676 D GLY 6 1 Y 1 D SER 677 D SER 7 1 Y 1 D ARG 746 D ARG 76 1 Y 1 D SER 747 D SER 77 1 Y 154.050 68.0900 28.720 0.2377 0.2236 0.2247 2.4010 48.6440 1023 12409 13432 7.6200 97.1300 0.7890 0.3100 random 1 FREE R-VALUE 2.000 MOLECULAR REPLACEMENT 26.8900 0.9000 1.1100 3HQA ML FLAT BULK SOLVENT MODEL 2.4010 48.6440 22 2165 61.30 0 0 2143 275 0.002 2175 0.463 2890 0.019 331 0.002 368 12.943 838 0.3339 0.2736 2.5277 141 1661 1802 7 93.0000 0.3199 0.2778 2.6860 164 1711 1875 7 96.0000 0.2800 0.2589 2.8934 143 1734 1877 7 97.0000 0.3300 0.2671 3.1845 139 1784 1923 7 98.0000 0.2304 0.2366 3.6452 136 1807 1943 7 99.0000 0.2186 0.2007 4.5920 132 1825 1957 7 99.0000 0.1938 0.1962 48.6544 168 1887 2055 7 99.0000 50.000 0.995 2.400 50 4P39 13812 2 -3.000 0.080 0.088 1.017 1 17.070 85853 6.2 99.600 0.903 0.552 2.400 2.500 3.810 9381 1564 1541 0.604 1 6.1 0 98.500 0.959 0.422 2.500 2.600 5.430 8888 1349 1346 0.459 1 0 99.800 0.974 0.327 2.600 2.700 7.040 7301 1146 1144 0.356 1 0 99.800 0.986 0.223 2.700 2.900 10.370 11249 1839 1838 0.243 1 0 99.900 0.994 0.163 2.900 3.200 15.830 13519 2017 2010 0.177 1 0 99.700 0.995 0.118 3.200 3.500 20.910 8735 1358 1358 0.128 1 0 100.000 0.995 0.098 3.500 4.000 24.020 8621 1471 1469 0.108 1 0 99.900 0.998 0.054 4.000 4.500 30.990 5650 912 910 0.059 1 0 99.800 0.998 0.050 4.500 5.000 33.010 3413 581 580 0.054 1 0 99.800 0.998 0.049 5.000 6.000 30.860 3782 669 667 0.054 1 0 99.700 0.997 0.045 6.000 7.000 32.920 2067 343 342 0.049 1 0 99.700 0.997 0.043 7.000 8.000 34.760 1126 192 191 0.048 1 0 99.500 0.999 0.038 8.000 9.000 34.950 658 123 119 0.042 1 0 96.700 0.998 0.038 9.000 10.000 35.390 371 76 71 0.042 1 0 93.400 0.996 0.043 10.000 15.000 34.130 763 155 153 0.048 1 0 98.700 0.999 0.052 15.000 20.000 32.840 207 42 42 0.056 1 0 100.000 0.998 0.056 20.000 30.000 30.810 100 23 23 0.071 1 0 100.000 0.998 0.032 30.000 26.280 22 12 8 0.040 1 0 66.700 data scaling XDS data scaling XSCALE data extraction PDB_EXTRACT 3.14 phasing PHASER refinement PHENIX (phenix.refine: 1.8.3_1479) Crystal structure of the human C5aR antagonist C5a-A8 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N The biological unit is a monomer. There are 4 biological units in the asymmetric unit (chains A, B, C & D) A THR 678 A THR 8 HELX_P A ALA 703 A ALA 33 1 AA1 26 A THR 710 A THR 40 HELX_P A ALA 716 A ALA 46 1 AA2 7 A GLY 721 A GLY 51 HELX_P A ASN 741 A ASN 71 1 AA3 21 B THR 678 B THR 8 HELX_P B ALA 703 B ALA 33 1 AA4 26 B THR 710 B THR 40 HELX_P B ARG 717 B ARG 47 1 AA5 8 B GLY 721 B GLY 51 HELX_P B ASN 741 B ASN 71 1 AA6 21 C LEU 679 C LEU 9 HELX_P C ARG 704 C ARG 34 1 AA7 26 C THR 710 C THR 40 HELX_P C ARG 717 C ARG 47 1 AA8 8 C GLY 721 C GLY 51 HELX_P C ASN 741 C ASN 71 1 AA9 21 D LEU 679 D LEU 9 HELX_P D ARG 704 D ARG 34 1 AB1 26 D THR 710 D THR 40 HELX_P D ALA 716 D ALA 46 1 AB2 7 D GLY 721 D GLY 51 HELX_P D ASN 741 D ASN 71 1 AB3 21 disulf 2.031 A CYS 698 A SG CYS 28 1_555 A CYS 724 A SG CYS 54 1_555 disulf 2.029 A CYS 699 A SG CYS 29 1_555 A CYS 731 A SG CYS 61 1_555 disulf 2.032 A CYS 711 A SG CYS 41 1_555 A CYS 732 A SG CYS 62 1_555 disulf 2.030 B CYS 698 B SG CYS 28 1_555 B CYS 724 B SG CYS 54 1_555 disulf 2.033 B CYS 699 B SG CYS 29 1_555 B CYS 731 B SG CYS 61 1_555 disulf 2.023 B CYS 711 B SG CYS 41 1_555 B CYS 732 B SG CYS 62 1_555 disulf 2.030 C CYS 698 C SG CYS 28 1_555 C CYS 724 C SG CYS 54 1_555 disulf 2.030 C CYS 699 C SG CYS 29 1_555 C CYS 731 C SG CYS 61 1_555 disulf 2.032 C CYS 711 C SG CYS 41 1_555 C CYS 732 C SG CYS 62 1_555 disulf 2.030 D CYS 698 D SG CYS 28 1_555 D CYS 724 D SG CYS 54 1_555 disulf 2.030 D CYS 699 D SG CYS 29 1_555 D CYS 731 D SG CYS 61 1_555 disulf 2.034 D CYS 711 D SG CYS 41 1_555 D CYS 732 D SG CYS 62 1_555 IMMUNE SYSTEM complement anaphylatoxin, C5a, three-helix bundle, GPCR antagonist, IMMUNE SYSTEM CO5_HUMAN UNP 1 678 P01031 TLQKKIEEIAAKYKHSVVKKCCYDGACVNNDETCEQRAARISLGPRCIKAFTECCVVASQLRANISHKDM 678 747 4P39 678 747 P01031 A 1 8 77 678 747 4P39 678 747 P01031 B 1 8 77 678 747 4P39 678 747 P01031 C 1 8 77 678 747 4P39 678 747 P01031 D 1 8 77 1 expression tag GLY 671 4P39 A P01031 UNP 1 1 expression tag ALA 672 4P39 A P01031 UNP 2 1 expression tag GLY 673 4P39 A P01031 UNP 3 1 expression tag ALA 674 4P39 A P01031 UNP 4 1 expression tag ALA 675 4P39 A P01031 UNP 5 1 expression tag GLY 676 4P39 A P01031 UNP 6 1 expression tag SER 677 4P39 A P01031 UNP 7 1 CYS engineered mutation ARG 704 4P39 A P01031 UNP 704 34 1 HIS engineered mutation PHE 744 4P39 A P01031 UNP 744 74 1 ASP engineered mutation ARG 746 4P39 A P01031 UNP 746 76 1 MET engineered mutation SER 747 4P39 A P01031 UNP 747 77 2 expression tag GLY 671 4P39 B P01031 UNP 1 2 expression tag ALA 672 4P39 B P01031 UNP 2 2 expression tag GLY 673 4P39 B P01031 UNP 3 2 expression tag ALA 674 4P39 B P01031 UNP 4 2 expression tag ALA 675 4P39 B P01031 UNP 5 2 expression tag GLY 676 4P39 B P01031 UNP 6 2 expression tag SER 677 4P39 B P01031 UNP 7 2 CYS engineered mutation ARG 704 4P39 B P01031 UNP 704 34 2 HIS engineered mutation PHE 744 4P39 B P01031 UNP 744 74 2 ASP engineered mutation ARG 746 4P39 B P01031 UNP 746 76 2 MET engineered mutation SER 747 4P39 B P01031 UNP 747 77 3 expression tag GLY 671 4P39 C P01031 UNP 1 3 expression tag ALA 672 4P39 C P01031 UNP 2 3 expression tag GLY 673 4P39 C P01031 UNP 3 3 expression tag ALA 674 4P39 C P01031 UNP 4 3 expression tag ALA 675 4P39 C P01031 UNP 5 3 expression tag GLY 676 4P39 C P01031 UNP 6 3 expression tag SER 677 4P39 C P01031 UNP 7 3 CYS engineered mutation ARG 704 4P39 C P01031 UNP 704 34 3 HIS engineered mutation PHE 744 4P39 C P01031 UNP 744 74 3 ASP engineered mutation ARG 746 4P39 C P01031 UNP 746 76 3 MET engineered mutation SER 747 4P39 C P01031 UNP 747 77 4 expression tag GLY 671 4P39 D P01031 UNP 1 4 expression tag ALA 672 4P39 D P01031 UNP 2 4 expression tag GLY 673 4P39 D P01031 UNP 3 4 expression tag ALA 674 4P39 D P01031 UNP 4 4 expression tag ALA 675 4P39 D P01031 UNP 5 4 expression tag GLY 676 4P39 D P01031 UNP 6 4 expression tag SER 677 4P39 D P01031 UNP 7 4 CYS engineered mutation ARG 704 4P39 D P01031 UNP 704 34 4 HIS engineered mutation PHE 744 4P39 D P01031 UNP 744 74 4 ASP engineered mutation ARG 746 4P39 D P01031 UNP 746 76 4 MET engineered mutation SER 747 4P39 D P01031 UNP 747 77 20 C 2 2 21