0.016488 0.000000 0.000000 0.000000 0.016488 0.000000 0.000000 0.000000 0.011960 0.00000 0.00000 0.00000 Grondin, J.M. Allingham, J.S. Boraston, A.B. Smith, S.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 60.650 60.650 83.610 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-galactopyranose N-acetyl-beta-D-galactosamine; 2-acetamido-2-deoxy-beta-D-galactose; 2-acetamido-2-deoxy-D-galactose; 2-acetamido-2-deoxy-galactose; N-ACETYL-D-GALACTOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 S C N 77 N C N 78 N O N 79 N C N 80 N C N 81 N C N 82 N O N 83 N N N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N C N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N N N 115 N C N 116 N C N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N N N 125 S C N 126 N C N 127 N O N 128 N C Y 129 N C Y 130 N N Y 131 N C Y 132 N C Y 133 N N N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 S C N 153 N C N 154 N C N 155 N C N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N C N 177 N C N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C N 197 N C N 198 N C N 199 N C N 200 N N N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N S N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 R C N 238 R C N 239 R C N 240 R C N 241 R C N 242 N C N 243 N C N 244 N C N 245 N N N 246 N O N 247 N O N 248 N O N 249 N O N 250 N O N 251 N O N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C Y 272 N C Y 273 N C Y 274 N C Y 275 N C Y 276 N C Y 277 N C N 278 N O N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C N 312 N O N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N N N 322 S C N 323 N C N 324 N O N 325 R C N 326 N O N 327 N C N 328 N O N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N N Y 347 N C Y 348 N C Y 349 N C Y 350 N C Y 351 N C N 352 N O N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N C Y 374 N C Y 375 N C N 376 N O N 377 N O N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 N C N 394 N C N 395 N C N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing Y 265 N doub Y 266 N sing Y 267 N sing N 268 N sing Y 269 N doub N 270 N sing Y 271 N doub N 272 N sing Y 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N doub N 330 N sing N 331 N sing N 332 N sing N 333 N sing Y 334 N doub Y 335 N sing Y 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N sing Y 343 N doub N 344 N sing Y 345 N doub N 346 N sing Y 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing Y 362 N doub Y 363 N sing Y 364 N sing N 365 N sing Y 366 N doub N 367 N sing Y 368 N doub N 369 N sing Y 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N doub N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing US PLoS ONE 1932-6203 12 e0171606 e0171606 10.1371/journal.pone.0171606 28158290 Diverse modes of galacto-specific carbohydrate recognition by a family 31 glycoside hydrolase from Clostridium perfringens. 2017 10.2210/pdb4p5y/pdb pdb_00004p5y 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 93.15 1 CCD 2014-02-16 MARMOSAIC 325 mm CCD SINGLE WAVELENGTH x-ray 1 0.97946 1.0 BL14-1 SSRL 0.97946 SYNCHROTRON SSRL BEAMLINE BL14-1 18993.844 Glycosyl hydrolase, family 31/fibronectin type III domain protein UNP residues 1640-1785 1 man polymer 221.208 2-acetamido-2-deoxy-beta-D-galactopyranose 1 man non-polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 52 nat water no no MHHHHHHITSLYKKAGSEFALDSSKLEAIYATSEADRDYKENAVDGDENTIWHSAYQAADKLPVSITIKLDKAYDLNQID YLPRQNSRNGHVTEYKIETSLDNENWTEVRTGNLEVNEAGNALANRGYNPIRFNTINAQYLRFTALKTLGDTNNKYASAA ELVFYGK MHHHHHHITSLYKKAGSEFALDSSKLEAIYATSEADRDYKENAVDGDENTIWHSAYQAADKLPVSITIKLDKAYDLNQID YLPRQNSRNGHVTEYKIETSLDNENWTEVRTGNLEVNEAGNALANRGYNPIRFNTINAQYLRFTALKTLGDTNNKYASAA ELVFYGK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n ATCC 13124 / NCTC 8237 / Type A sample 1 167 CPF_1301 195103 Clostridium perfringens 562 Escherichia coli Biological sequence 2.03 39.35 VAPOR DIFFUSION, HANGING DROP 8.0 1.4M ammonium citrate 298 pdbx_audit_support chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Database references Author supporting evidence Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2015-10-07 1 1 2017-03-08 1 2 2020-01-08 1 3 2020-07-29 1 4 2023-09-27 _pdbx_audit_support.funding_organization _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession Canada Canadian Institutes of Health Research (CIHR) MOP 68913 DGalpNAcb N-acetyl-b-D-galactopyranosamine b-D-GalpNAc GalNAc 4LKS contains the same protein complexed with galactose 4LQR contains the same protein in apo form N RCSB Y RCSB 2014-03-04 REL REL 1 A O HOH 324 5.89 1 A O HOH 337 6.45 NGA 2-acetamido-2-deoxy-beta-D-galactopyranose CA CALCIUM ION HOH water 4LKS PDB experimental model NGA 1 2 NGA NGA 201 A CA 1 3 CA CA 202 A HOH 42 4 HOH HOH 301 A HOH 46 4 HOH HOH 302 A HOH 21 4 HOH HOH 303 A HOH 47 4 HOH HOH 304 A HOH 20 4 HOH HOH 305 A HOH 41 4 HOH HOH 306 A HOH 48 4 HOH HOH 307 A HOH 29 4 HOH HOH 308 A HOH 10 4 HOH HOH 309 A HOH 45 4 HOH HOH 310 A HOH 44 4 HOH HOH 311 A HOH 52 4 HOH HOH 312 A HOH 17 4 HOH HOH 313 A HOH 5 4 HOH HOH 314 A HOH 30 4 HOH HOH 315 A HOH 43 4 HOH HOH 316 A HOH 1 4 HOH HOH 317 A HOH 19 4 HOH HOH 318 A HOH 24 4 HOH HOH 319 A HOH 2 4 HOH HOH 320 A HOH 3 4 HOH HOH 321 A HOH 4 4 HOH HOH 322 A HOH 6 4 HOH HOH 323 A HOH 7 4 HOH HOH 324 A HOH 8 4 HOH HOH 325 A HOH 9 4 HOH HOH 326 A HOH 11 4 HOH HOH 327 A HOH 12 4 HOH HOH 328 A HOH 13 4 HOH HOH 329 A HOH 14 4 HOH HOH 330 A HOH 15 4 HOH HOH 331 A HOH 16 4 HOH HOH 332 A HOH 18 4 HOH HOH 333 A HOH 22 4 HOH HOH 334 A HOH 23 4 HOH HOH 335 A HOH 25 4 HOH HOH 336 A HOH 26 4 HOH HOH 337 A HOH 27 4 HOH HOH 338 A HOH 28 4 HOH HOH 339 A HOH 31 4 HOH HOH 340 A HOH 32 4 HOH HOH 341 A HOH 33 4 HOH HOH 342 A HOH 34 4 HOH HOH 343 A HOH 35 4 HOH HOH 344 A HOH 36 4 HOH HOH 345 A HOH 37 4 HOH HOH 346 A HOH 38 4 HOH HOH 347 A HOH 39 4 HOH HOH 348 A HOH 40 4 HOH HOH 349 A HOH 49 4 HOH HOH 350 A HOH 50 4 HOH HOH 351 A HOH 51 4 HOH HOH 352 A n 1 -4 A n 2 -3 A n 3 -2 A n 4 -1 A n 5 0 A n 6 1 A n 7 2 A n 8 3 A n 9 4 A n 10 5 A LEU 6 n 11 LEU 6 A TYR 7 n 12 TYR 7 A LYS 8 n 13 LYS 8 A LYS 9 n 14 LYS 9 A ALA 10 n 15 ALA 10 A GLY 11 n 16 GLY 11 A SER 12 n 17 SER 12 A GLU 13 n 18 GLU 13 A PHE 14 n 19 PHE 14 A ALA 15 n 20 ALA 15 A LEU 16 n 21 LEU 16 A ASP 17 n 22 ASP 17 A SER 18 n 23 SER 18 A SER 19 n 24 SER 19 A LYS 20 n 25 LYS 20 A LEU 21 n 26 LEU 21 A GLU 22 n 27 GLU 22 A ALA 23 n 28 ALA 23 A ILE 24 n 29 ILE 24 A TYR 25 n 30 TYR 25 A ALA 26 n 31 ALA 26 A THR 27 n 32 THR 27 A SER 28 n 33 SER 28 A GLU 29 n 34 GLU 29 A ALA 30 n 35 ALA 30 A ASP 31 n 36 ASP 31 A ARG 32 n 37 ARG 32 A ASP 33 n 38 ASP 33 A TYR 34 n 39 TYR 34 A LYS 35 n 40 LYS 35 A GLU 36 n 41 GLU 36 A ASN 37 n 42 ASN 37 A ALA 38 n 43 ALA 38 A VAL 39 n 44 VAL 39 A ASP 40 n 45 ASP 40 A GLY 41 n 46 GLY 41 A ASP 42 n 47 ASP 42 A GLU 43 n 48 GLU 43 A ASN 44 n 49 ASN 44 A THR 45 n 50 THR 45 A ILE 46 n 51 ILE 46 A TRP 47 n 52 TRP 47 A HIS 48 n 53 HIS 48 A SER 49 n 54 SER 49 A ALA 50 n 55 ALA 50 A TYR 51 n 56 TYR 51 A GLN 52 n 57 GLN 52 A ALA 53 n 58 ALA 53 A ALA 54 n 59 ALA 54 A ASP 55 n 60 ASP 55 A LYS 56 n 61 LYS 56 A LEU 57 n 62 LEU 57 A PRO 58 n 63 PRO 58 A VAL 59 n 64 VAL 59 A SER 60 n 65 SER 60 A ILE 61 n 66 ILE 61 A THR 62 n 67 THR 62 A ILE 63 n 68 ILE 63 A LYS 64 n 69 LYS 64 A LEU 65 n 70 LEU 65 A ASP 66 n 71 ASP 66 A LYS 67 n 72 LYS 67 A ALA 68 n 73 ALA 68 A TYR 69 n 74 TYR 69 A ASP 70 n 75 ASP 70 A LEU 71 n 76 LEU 71 A ASN 72 n 77 ASN 72 A GLN 73 n 78 GLN 73 A ILE 74 n 79 ILE 74 A ASP 75 n 80 ASP 75 A TYR 76 n 81 TYR 76 A LEU 77 n 82 LEU 77 A PRO 78 n 83 PRO 78 A ARG 79 n 84 ARG 79 A GLN 80 n 85 GLN 80 A ASN 81 n 86 ASN 81 A SER 82 n 87 SER 82 A ARG 83 n 88 ARG 83 A ASN 84 n 89 ASN 84 A GLY 85 n 90 GLY 85 A HIS 86 n 91 HIS 86 A VAL 87 n 92 VAL 87 A THR 88 n 93 THR 88 A GLU 89 n 94 GLU 89 A TYR 90 n 95 TYR 90 A LYS 91 n 96 LYS 91 A ILE 92 n 97 ILE 92 A GLU 93 n 98 GLU 93 A THR 94 n 99 THR 94 A SER 95 n 100 SER 95 A LEU 96 n 101 LEU 96 A ASP 97 n 102 ASP 97 A ASN 98 n 103 ASN 98 A GLU 99 n 104 GLU 99 A ASN 100 n 105 ASN 100 A TRP 101 n 106 TRP 101 A THR 102 n 107 THR 102 A GLU 103 n 108 GLU 103 A VAL 104 n 109 VAL 104 A ARG 105 n 110 ARG 105 A THR 106 n 111 THR 106 A GLY 107 n 112 GLY 107 A ASN 108 n 113 ASN 108 A LEU 109 n 114 LEU 109 A GLU 110 n 115 GLU 110 A VAL 111 n 116 VAL 111 A ASN 112 n 117 ASN 112 A GLU 113 n 118 GLU 113 A ALA 114 n 119 ALA 114 A GLY 115 n 120 GLY 115 A ASN 116 n 121 ASN 116 A ALA 117 n 122 ALA 117 A LEU 118 n 123 LEU 118 A ALA 119 n 124 ALA 119 A ASN 120 n 125 ASN 120 A ARG 121 n 126 ARG 121 A GLY 122 n 127 GLY 122 A TYR 123 n 128 TYR 123 A ASN 124 n 129 ASN 124 A PRO 125 n 130 PRO 125 A ILE 126 n 131 ILE 126 A ARG 127 n 132 ARG 127 A PHE 128 n 133 PHE 128 A ASN 129 n 134 ASN 129 A THR 130 n 135 THR 130 A ILE 131 n 136 ILE 131 A ASN 132 n 137 ASN 132 A ALA 133 n 138 ALA 133 A GLN 134 n 139 GLN 134 A TYR 135 n 140 TYR 135 A LEU 136 n 141 LEU 136 A ARG 137 n 142 ARG 137 A PHE 138 n 143 PHE 138 A THR 139 n 144 THR 139 A ALA 140 n 145 ALA 140 A LEU 141 n 146 LEU 141 A LYS 142 n 147 LYS 142 A THR 143 n 148 THR 143 A LEU 144 n 149 LEU 144 A GLY 145 n 150 GLY 145 A ASP 146 n 151 ASP 146 A THR 147 n 152 THR 147 A ASN 148 n 153 ASN 148 A ASN 149 n 154 ASN 149 A LYS 150 n 155 LYS 150 A TYR 151 n 156 TYR 151 A ALA 152 n 157 ALA 152 A SER 153 n 158 SER 153 A ALA 154 n 159 ALA 154 A ALA 155 n 160 ALA 155 A GLU 156 n 161 GLU 156 A LEU 157 n 162 LEU 157 A VAL 158 n 163 VAL 158 A PHE 159 n 164 PHE 159 A TYR 160 n 165 TYR 160 A GLY 161 n 166 GLY 161 A LYS 162 n 167 LYS 162 A author_and_software_defined_assembly PISA 1 monomeric 340 3 7480 A ASN 37 A O ASN 42 1_555 A CA 202 C CA CA 1_555 A ASP 40 A OD1 ASP 45 1_555 76.7 A ASN 37 A O ASN 42 1_555 A CA 202 C CA CA 1_555 A ASP 42 A O ASP 47 1_555 173.6 A ASP 40 A OD1 ASP 45 1_555 A CA 202 C CA CA 1_555 A ASP 42 A O ASP 47 1_555 99.9 A ASN 37 A O ASN 42 1_555 A CA 202 C CA CA 1_555 A THR 45 A O THR 50 1_555 99.1 A ASP 40 A OD1 ASP 45 1_555 A CA 202 C CA CA 1_555 A THR 45 A O THR 50 1_555 152.8 A ASP 42 A O ASP 47 1_555 A CA 202 C CA CA 1_555 A THR 45 A O THR 50 1_555 86.4 A ASN 37 A O ASN 42 1_555 A CA 202 C CA CA 1_555 A THR 45 A OG1 THR 50 1_555 95.3 A ASP 40 A OD1 ASP 45 1_555 A CA 202 C CA CA 1_555 A THR 45 A OG1 THR 50 1_555 77.5 A ASP 42 A O ASP 47 1_555 A CA 202 C CA CA 1_555 A THR 45 A OG1 THR 50 1_555 89.2 A THR 45 A O THR 50 1_555 A CA 202 C CA CA 1_555 A THR 45 A OG1 THR 50 1_555 76.2 A ASN 37 A O ASN 42 1_555 A CA 202 C CA CA 1_555 A ALA 155 A O ALA 160 1_555 80.2 A ASP 40 A OD1 ASP 45 1_555 A CA 202 C CA CA 1_555 A ALA 155 A O ALA 160 1_555 125.6 A ASP 42 A O ASP 47 1_555 A CA 202 C CA CA 1_555 A ALA 155 A O ALA 160 1_555 97.7 A THR 45 A O THR 50 1_555 A CA 202 C CA CA 1_555 A ALA 155 A O ALA 160 1_555 79.0 A THR 45 A OG1 THR 50 1_555 A CA 202 C CA CA 1_555 A ALA 155 A O ALA 160 1_555 153.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 22 A N GLU 27 A O LYS 64 A O LYS 69 A N TYR 69 A N TYR 74 A O ALA 133 A O ALA 138 A O LEU 141 A O LEU 146 A N GLU 89 A N GLU 94 A N ILE 92 A N ILE 97 A O VAL 104 A O VAL 109 A N GLU 22 A N GLU 27 A O LYS 64 A O LYS 69 A N LEU 77 A N LEU 82 A O GLU 156 A O GLU 161 A N TRP 47 A N TRP 52 A O ALA 154 A O ALA 159 1 A CG LYS 9 A CG LYS 14 1 Y 1 A CD LYS 9 A CD LYS 14 1 Y 1 A CE LYS 9 A CE LYS 14 1 Y 1 A NZ LYS 9 A NZ LYS 14 1 Y 1 A CD LYS 56 A CD LYS 61 1 Y 1 A CE LYS 56 A CE LYS 61 1 Y 1 A NZ LYS 56 A NZ LYS 61 1 Y 1 A NZ LYS 67 A NZ LYS 72 1 Y 1 A CG GLU 99 A CG GLU 104 1 Y 1 A CD GLU 99 A CD GLU 104 1 Y 1 A OE1 GLU 99 A OE1 GLU 104 1 Y 1 A OE2 GLU 99 A OE2 GLU 104 1 Y 1 A NZ LYS 142 A NZ LYS 147 1 Y 1 A CG LYS 162 A CG LYS 167 1 Y 1 A CD LYS 162 A CD LYS 167 1 Y 1 A CE LYS 162 A CE LYS 167 1 Y 1 A NZ LYS 162 A NZ LYS 167 1 Y 1 A MET -4 A MET 1 1 Y 1 A HIS -3 A HIS 2 1 Y 1 A HIS -2 A HIS 3 1 Y 1 A HIS -1 A HIS 4 1 Y 1 A HIS 0 A HIS 5 1 Y 1 A HIS 1 A HIS 6 1 Y 1 A HIS 2 A HIS 7 1 Y 1 A ILE 3 A ILE 8 1 Y 1 A THR 4 A THR 9 1 Y 1 A SER 5 A SER 10 1 Y 1 A A O O ASN HOH 108 301 1.95 1 A A O O HOH HOH 301 302 2.00 1 A A O O HOH HOH 318 320 2.10 1 A A O O HOH HOH 306 307 2.18 1 A A O O HOH HOH 304 316 2.13 1_555 3_554 1 A ASP 31 53.53 -128.85 1 A ASN 72 -140.11 16.29 1 A GLN 73 -176.11 142.10 0.221 0.174 0.176 2.50 42.89 302 5797 5.210 99.9 0.250 1 FREE R-VALUE 1.340 MOLECULAR REPLACEMENT 20.800 0.90 1.11 4LKS ML FLAT BULK SOLVENT MODEL 2.50 42.89 52 1303 16 0 1235 0.007 1273 1.016 1732 16.788 457 0.037 193 0.004 228 0.2532 0.1837 3.1496 142 2674 100.00 0.2088 0.1695 42.8923 160 2821 100.00 2.50 42.89 4P5Y 5836 1 14.3 6.0 100 2.50 2.60 3.8 1 100 refinement PHENIX (PHENIX.REFINE: 1.8.4_1496) Structure of CBM32-3 from a family 31 glycoside hydrolase from Clostridium perfringens in complex with N-acetylgalactosamine 1 N N 2 N N 3 N N 4 N N A ASP 17 A ASP 22 HELX_P A SER 19 A SER 24 5 AA1 3 A TYR 34 A TYR 39 HELX_P A VAL 39 A VAL 44 5 AA2 6 metalc 2.231 A ASN 37 A O ASN 42 1_555 A CA 202 C CA CA 1_555 metalc 2.521 A ASP 40 A OD1 ASP 45 1_555 A CA 202 C CA CA 1_555 metalc 2.363 A ASP 42 A O ASP 47 1_555 A CA 202 C CA CA 1_555 metalc 2.582 A THR 45 A O THR 50 1_555 A CA 202 C CA CA 1_555 metalc 2.400 A THR 45 A OG1 THR 50 1_555 A CA 202 C CA CA 1_555 metalc 2.423 A ALA 155 A O ALA 160 1_555 A CA 202 C CA CA 1_555 SUGAR BINDING PROTEIN B-sandwich, carbohydrate-binding, N-acetylgalactosamine, SUGAR BINDING PROTEIN A LEU 57 A LEU 62 1 A PRO 58 A PRO 63 -3.59 Q0TRJ3_CLOP1 UNP 1 1640 Q0TRJ3 DSSKLEAIYATSEADRDYKENAVDGDENTIWHSAYQAADKLPVSITIKLDKAYDLNQIDYLPRQNSRNGHVTEYKIETSL DNENWTEVRTGNLEVNEAGNALANRGYNPIRFNTINAQYLRFTALKTLGDTNNKYASAAELVFYGK 1640 1785 4P5Y 17 162 Q0TRJ3 A 1 22 167 1 initiating methionine MET -4 4P5Y A Q0TRJ3 UNP 1 1 expression tag HIS -3 4P5Y A Q0TRJ3 UNP 2 1 expression tag HIS -2 4P5Y A Q0TRJ3 UNP 3 1 expression tag HIS -1 4P5Y A Q0TRJ3 UNP 4 1 expression tag HIS 0 4P5Y A Q0TRJ3 UNP 5 1 expression tag HIS 1 4P5Y A Q0TRJ3 UNP 6 1 expression tag HIS 2 4P5Y A Q0TRJ3 UNP 7 1 expression tag ILE 3 4P5Y A Q0TRJ3 UNP 8 1 expression tag THR 4 4P5Y A Q0TRJ3 UNP 9 1 expression tag SER 5 4P5Y A Q0TRJ3 UNP 10 1 expression tag LEU 6 4P5Y A Q0TRJ3 UNP 11 1 expression tag TYR 7 4P5Y A Q0TRJ3 UNP 12 1 expression tag LYS 8 4P5Y A Q0TRJ3 UNP 13 1 expression tag LYS 9 4P5Y A Q0TRJ3 UNP 14 1 expression tag ALA 10 4P5Y A Q0TRJ3 UNP 15 1 expression tag GLY 11 4P5Y A Q0TRJ3 UNP 16 1 expression tag SER 12 4P5Y A Q0TRJ3 UNP 17 1 expression tag GLU 13 4P5Y A Q0TRJ3 UNP 18 1 expression tag PHE 14 4P5Y A Q0TRJ3 UNP 19 1 expression tag ALA 15 4P5Y A Q0TRJ3 UNP 20 1 expression tag LEU 16 4P5Y A Q0TRJ3 UNP 21 5 3 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A LEU 21 A LEU 26 A ALA 26 A ALA 31 A VAL 59 A VAL 64 A LEU 77 A LEU 82 A ASN 124 A ASN 129 A THR 143 A THR 148 A VAL 87 A VAL 92 A SER 95 A SER 100 A THR 102 A THR 107 A ASN 108 A ASN 113 A LEU 21 A LEU 26 A ALA 26 A ALA 31 A VAL 59 A VAL 64 A LEU 77 A LEU 82 A GLU 156 A GLU 161 A LYS 162 A LYS 167 A TRP 47 A TRP 52 A HIS 48 A HIS 53 A SER 153 A SER 158 A ALA 154 A ALA 159 96 P 43 21 2