0.023596
0.000000
0.000000
0.000000
0.012827
0.000000
0.000000
0.000000
0.008675
0.000000
0.000000
0.000000
Little, D.J.
Li, G.
Ing, C.
DiFrancesco, B.
Bamford, N.C.
Robinson, H.
Nitz, M.
Pomes, R.
Howell, P.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
42.380
77.958
115.276
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
O
N
76
N
C
N
77
N
O
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
N
N
85
S
C
N
86
N
C
N
87
N
O
N
88
N
C
N
89
N
C
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
O
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
N
N
105
S
C
N
106
N
C
N
107
N
O
N
108
N
C
N
109
N
C
N
110
N
C
N
111
N
O
N
112
N
O
N
113
N
O
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
Y
138
N
C
Y
139
N
N
Y
140
N
C
Y
141
N
C
Y
142
N
N
N
143
N
O
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
S
C
N
162
N
C
N
163
N
C
N
164
N
C
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
N
N
202
S
C
N
203
N
C
N
204
N
O
N
205
N
C
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
N
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
S
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
R
C
N
247
R
C
N
248
R
C
N
249
S
C
N
250
R
C
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
N
N
255
N
O
N
256
N
O
N
257
N
O
N
258
N
O
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
O
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
R
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
N
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
C
N
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
Y
136
N
sing
Y
137
N
doub
Y
138
N
doub
N
139
N
sing
Y
140
N
sing
N
141
N
sing
Y
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
doub
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
Y
274
N
doub
Y
275
N
sing
Y
276
N
sing
N
277
N
sing
Y
278
N
doub
N
279
N
sing
Y
280
N
doub
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
doub
N
355
N
sing
Y
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
1091-6490
111
11013
11018
10.1073/pnas.1406388111
24994902
Modification and periplasmic translocation of the biofilm exopolysaccharide poly-beta-1,6-N-acetyl-D-glucosamine.
2014
10.2210/pdb4p7q/pdb
pdb_00004p7q
100
1
CCD
2013-07-05
RAYONIX MX-300
double crystal Si(111)
SINGLE WAVELENGTH
M
x-ray
1
1.08
1.0
08ID-1
CLSI
1.08
SYNCHROTRON
CLSI BEAMLINE 08ID-1
42441.867
Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase
3.5.1.-
UNP residues 310-672
1
man
polymer
62.068
1,2-ETHANEDIOL
2
syn
non-polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
4
syn
non-polymer
18.015
water
300
nat
water
PgaB, Poly-beta-1,6-GlcNAc N-deacetylase
no
no
GSHMEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRV
AWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFH
DDALLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIFALPVI
QPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQAKDKSILELQAQNWQKNGQHQAISSQ
QLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIRPEFSTAWYPKND
GSHMEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRV
AWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFH
DDALLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIFALPVI
QPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQAKDKSILELQAQNWQKNGQHQAISSQ
QLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIRPEFSTAWYPKND
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
K12
sample
1
367
pgaB, ycdR, b1023, JW5142
83333
Escherichia coli
511693
Escherichia coli
BL21
plasmid
Biological sequence
pET28A
1
2.24
45.17
VAPOR DIFFUSION, HANGING DROP
6.5
18% PEG3350, 0.1 M Bis-Tris, 0.5 M N-acetylglucosamine
293
citation
entity
entity_src_gen
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_assembly_prop
pdbx_struct_oper_list
software
pdbx_audit_support
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
refine_hist
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Database references
Database references
Derived calculations
Other
Refinement description
Source and taxonomy
Structure summary
Author supporting evidence
Data collection
Derived calculations
Refinement description
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2014-07-02
1
1
2014-07-23
1
2
2014-10-01
1
3
2017-11-22
1
4
2020-01-08
1
5
2020-07-29
1
6
2023-09-27
_citation.journal_id_CSD
_entity.pdbx_description
_entity_src_gen.pdbx_alt_source_flag
_pdbx_database_status.pdb_format_compatible
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_oper_list.symmetry_operation
_pdbx_audit_support.funding_organization
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_refine_hist.pdbx_number_atoms_nucleic_acid
_refine_hist.pdbx_number_atoms_protein
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Canada
Canadian Institutes of Health Research (CIHR)
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
Escherichia coli PgaB C-terminal domain apo form
Escherichia coli PgaB C-terminal domain in complex with glucosamine
Escherichia coli PgaB C-terminal domain apo form, P1 crystal form
Escherichia coli PgaB C-terminal domain in complex with a poly-alpha-1,6-N-acetyl-D-glucosamine (PNAG) hexamer
N
RCSB
Y
RCSB
2014-03-27
REL
REL
1
A
O
HOH
1054
5.83
EDO
1,2-ETHANEDIOL
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
HOH
water
4P7L
PDB entry 4P7L
PDB
experimental model
EDO
1
2
EDO
EDO
701
A
EDO
2
2
EDO
EDO
702
A
NAG
1
3
NAG
NAG
703
A
NAG
2
3
NAG
NAG
704
A
NAG
3
3
NAG
NAG
705
A
NAG
4
3
NAG
NAG
706
A
HOH
300
4
HOH
HOH
801
A
HOH
268
4
HOH
HOH
802
A
HOH
137
4
HOH
HOH
803
A
HOH
130
4
HOH
HOH
804
A
HOH
107
4
HOH
HOH
805
A
HOH
83
4
HOH
HOH
806
A
HOH
294
4
HOH
HOH
807
A
HOH
102
4
HOH
HOH
808
A
HOH
53
4
HOH
HOH
809
A
HOH
72
4
HOH
HOH
810
A
HOH
74
4
HOH
HOH
811
A
HOH
103
4
HOH
HOH
812
A
HOH
19
4
HOH
HOH
813
A
HOH
97
4
HOH
HOH
814
A
HOH
139
4
HOH
HOH
815
A
HOH
34
4
HOH
HOH
816
A
HOH
171
4
HOH
HOH
817
A
HOH
59
4
HOH
HOH
818
A
HOH
144
4
HOH
HOH
819
A
HOH
189
4
HOH
HOH
820
A
HOH
179
4
HOH
HOH
821
A
HOH
121
4
HOH
HOH
822
A
HOH
168
4
HOH
HOH
823
A
HOH
66
4
HOH
HOH
824
A
HOH
117
4
HOH
HOH
825
A
HOH
30
4
HOH
HOH
826
A
HOH
105
4
HOH
HOH
827
A
HOH
225
4
HOH
HOH
828
A
HOH
65
4
HOH
HOH
829
A
HOH
28
4
HOH
HOH
830
A
HOH
94
4
HOH
HOH
831
A
HOH
233
4
HOH
HOH
832
A
HOH
101
4
HOH
HOH
833
A
HOH
95
4
HOH
HOH
834
A
HOH
192
4
HOH
HOH
835
A
HOH
154
4
HOH
HOH
836
A
HOH
176
4
HOH
HOH
837
A
HOH
18
4
HOH
HOH
838
A
HOH
151
4
HOH
HOH
839
A
HOH
213
4
HOH
HOH
840
A
HOH
206
4
HOH
HOH
841
A
HOH
301
4
HOH
HOH
842
A
HOH
96
4
HOH
HOH
843
A
HOH
99
4
HOH
HOH
844
A
HOH
56
4
HOH
HOH
845
A
HOH
203
4
HOH
HOH
846
A
HOH
153
4
HOH
HOH
847
A
HOH
12
4
HOH
HOH
848
A
HOH
52
4
HOH
HOH
849
A
HOH
135
4
HOH
HOH
850
A
HOH
64
4
HOH
HOH
851
A
HOH
277
4
HOH
HOH
852
A
HOH
127
4
HOH
HOH
853
A
HOH
204
4
HOH
HOH
854
A
HOH
198
4
HOH
HOH
855
A
HOH
205
4
HOH
HOH
856
A
HOH
231
4
HOH
HOH
857
A
HOH
237
4
HOH
HOH
858
A
HOH
33
4
HOH
HOH
859
A
HOH
269
4
HOH
HOH
860
A
HOH
122
4
HOH
HOH
861
A
HOH
123
4
HOH
HOH
862
A
HOH
116
4
HOH
HOH
863
A
HOH
100
4
HOH
HOH
864
A
HOH
244
4
HOH
HOH
865
A
HOH
61
4
HOH
HOH
866
A
HOH
258
4
HOH
HOH
867
A
HOH
159
4
HOH
HOH
868
A
HOH
180
4
HOH
HOH
869
A
HOH
184
4
HOH
HOH
870
A
HOH
169
4
HOH
HOH
871
A
HOH
46
4
HOH
HOH
872
A
HOH
287
4
HOH
HOH
873
A
HOH
299
4
HOH
HOH
874
A
HOH
270
4
HOH
HOH
875
A
HOH
134
4
HOH
HOH
876
A
HOH
279
4
HOH
HOH
877
A
HOH
210
4
HOH
HOH
878
A
HOH
264
4
HOH
HOH
879
A
HOH
292
4
HOH
HOH
880
A
HOH
238
4
HOH
HOH
881
A
HOH
190
4
HOH
HOH
882
A
HOH
196
4
HOH
HOH
883
A
HOH
149
4
HOH
HOH
884
A
HOH
227
4
HOH
HOH
885
A
HOH
172
4
HOH
HOH
886
A
HOH
232
4
HOH
HOH
887
A
HOH
145
4
HOH
HOH
888
A
HOH
216
4
HOH
HOH
889
A
HOH
178
4
HOH
HOH
890
A
HOH
265
4
HOH
HOH
891
A
HOH
305
4
HOH
HOH
892
A
HOH
182
4
HOH
HOH
893
A
HOH
164
4
HOH
HOH
894
A
HOH
175
4
HOH
HOH
895
A
HOH
253
4
HOH
HOH
896
A
HOH
1
4
HOH
HOH
897
A
HOH
2
4
HOH
HOH
898
A
HOH
3
4
HOH
HOH
899
A
HOH
4
4
HOH
HOH
900
A
HOH
5
4
HOH
HOH
901
A
HOH
6
4
HOH
HOH
902
A
HOH
7
4
HOH
HOH
903
A
HOH
8
4
HOH
HOH
904
A
HOH
9
4
HOH
HOH
905
A
HOH
10
4
HOH
HOH
906
A
HOH
11
4
HOH
HOH
907
A
HOH
13
4
HOH
HOH
908
A
HOH
14
4
HOH
HOH
909
A
HOH
15
4
HOH
HOH
910
A
HOH
16
4
HOH
HOH
911
A
HOH
17
4
HOH
HOH
912
A
HOH
20
4
HOH
HOH
913
A
HOH
21
4
HOH
HOH
914
A
HOH
22
4
HOH
HOH
915
A
HOH
23
4
HOH
HOH
916
A
HOH
24
4
HOH
HOH
917
A
HOH
25
4
HOH
HOH
918
A
HOH
26
4
HOH
HOH
919
A
HOH
27
4
HOH
HOH
920
A
HOH
29
4
HOH
HOH
921
A
HOH
31
4
HOH
HOH
922
A
HOH
32
4
HOH
HOH
923
A
HOH
35
4
HOH
HOH
924
A
HOH
36
4
HOH
HOH
925
A
HOH
37
4
HOH
HOH
926
A
HOH
38
4
HOH
HOH
927
A
HOH
39
4
HOH
HOH
928
A
HOH
40
4
HOH
HOH
929
A
HOH
41
4
HOH
HOH
930
A
HOH
42
4
HOH
HOH
931
A
HOH
43
4
HOH
HOH
932
A
HOH
44
4
HOH
HOH
933
A
HOH
45
4
HOH
HOH
934
A
HOH
47
4
HOH
HOH
935
A
HOH
48
4
HOH
HOH
936
A
HOH
49
4
HOH
HOH
937
A
HOH
50
4
HOH
HOH
938
A
HOH
51
4
HOH
HOH
939
A
HOH
54
4
HOH
HOH
940
A
HOH
55
4
HOH
HOH
941
A
HOH
57
4
HOH
HOH
942
A
HOH
58
4
HOH
HOH
943
A
HOH
60
4
HOH
HOH
944
A
HOH
62
4
HOH
HOH
945
A
HOH
63
4
HOH
HOH
946
A
HOH
67
4
HOH
HOH
947
A
HOH
68
4
HOH
HOH
948
A
HOH
69
4
HOH
HOH
949
A
HOH
70
4
HOH
HOH
950
A
HOH
71
4
HOH
HOH
951
A
HOH
73
4
HOH
HOH
952
A
HOH
75
4
HOH
HOH
953
A
HOH
76
4
HOH
HOH
954
A
HOH
77
4
HOH
HOH
955
A
HOH
78
4
HOH
HOH
956
A
HOH
79
4
HOH
HOH
957
A
HOH
80
4
HOH
HOH
958
A
HOH
81
4
HOH
HOH
959
A
HOH
82
4
HOH
HOH
960
A
HOH
84
4
HOH
HOH
961
A
HOH
85
4
HOH
HOH
962
A
HOH
86
4
HOH
HOH
963
A
HOH
87
4
HOH
HOH
964
A
HOH
88
4
HOH
HOH
965
A
HOH
89
4
HOH
HOH
966
A
HOH
90
4
HOH
HOH
967
A
HOH
91
4
HOH
HOH
968
A
HOH
92
4
HOH
HOH
969
A
HOH
93
4
HOH
HOH
970
A
HOH
98
4
HOH
HOH
971
A
HOH
104
4
HOH
HOH
972
A
HOH
106
4
HOH
HOH
973
A
HOH
108
4
HOH
HOH
974
A
HOH
109
4
HOH
HOH
975
A
HOH
110
4
HOH
HOH
976
A
HOH
111
4
HOH
HOH
977
A
HOH
112
4
HOH
HOH
978
A
HOH
113
4
HOH
HOH
979
A
HOH
114
4
HOH
HOH
980
A
HOH
115
4
HOH
HOH
981
A
HOH
118
4
HOH
HOH
982
A
HOH
119
4
HOH
HOH
983
A
HOH
120
4
HOH
HOH
984
A
HOH
124
4
HOH
HOH
985
A
HOH
125
4
HOH
HOH
986
A
HOH
126
4
HOH
HOH
987
A
HOH
128
4
HOH
HOH
988
A
HOH
129
4
HOH
HOH
989
A
HOH
131
4
HOH
HOH
990
A
HOH
132
4
HOH
HOH
991
A
HOH
133
4
HOH
HOH
992
A
HOH
136
4
HOH
HOH
993
A
HOH
138
4
HOH
HOH
994
A
HOH
140
4
HOH
HOH
995
A
HOH
141
4
HOH
HOH
996
A
HOH
142
4
HOH
HOH
997
A
HOH
143
4
HOH
HOH
998
A
HOH
146
4
HOH
HOH
999
A
HOH
147
4
HOH
HOH
1000
A
HOH
148
4
HOH
HOH
1001
A
HOH
150
4
HOH
HOH
1002
A
HOH
152
4
HOH
HOH
1003
A
HOH
155
4
HOH
HOH
1004
A
HOH
156
4
HOH
HOH
1005
A
HOH
157
4
HOH
HOH
1006
A
HOH
158
4
HOH
HOH
1007
A
HOH
160
4
HOH
HOH
1008
A
HOH
161
4
HOH
HOH
1009
A
HOH
162
4
HOH
HOH
1010
A
HOH
163
4
HOH
HOH
1011
A
HOH
165
4
HOH
HOH
1012
A
HOH
166
4
HOH
HOH
1013
A
HOH
167
4
HOH
HOH
1014
A
HOH
170
4
HOH
HOH
1015
A
HOH
173
4
HOH
HOH
1016
A
HOH
174
4
HOH
HOH
1017
A
HOH
177
4
HOH
HOH
1018
A
HOH
181
4
HOH
HOH
1019
A
HOH
183
4
HOH
HOH
1020
A
HOH
185
4
HOH
HOH
1021
A
HOH
186
4
HOH
HOH
1022
A
HOH
187
4
HOH
HOH
1023
A
HOH
188
4
HOH
HOH
1024
A
HOH
191
4
HOH
HOH
1025
A
HOH
193
4
HOH
HOH
1026
A
HOH
194
4
HOH
HOH
1027
A
HOH
195
4
HOH
HOH
1028
A
HOH
197
4
HOH
HOH
1029
A
HOH
199
4
HOH
HOH
1030
A
HOH
200
4
HOH
HOH
1031
A
HOH
201
4
HOH
HOH
1032
A
HOH
202
4
HOH
HOH
1033
A
HOH
207
4
HOH
HOH
1034
A
HOH
208
4
HOH
HOH
1035
A
HOH
209
4
HOH
HOH
1036
A
HOH
211
4
HOH
HOH
1037
A
HOH
212
4
HOH
HOH
1038
A
HOH
214
4
HOH
HOH
1039
A
HOH
215
4
HOH
HOH
1040
A
HOH
217
4
HOH
HOH
1041
A
HOH
218
4
HOH
HOH
1042
A
HOH
219
4
HOH
HOH
1043
A
HOH
220
4
HOH
HOH
1044
A
HOH
221
4
HOH
HOH
1045
A
HOH
223
4
HOH
HOH
1046
A
HOH
224
4
HOH
HOH
1047
A
HOH
226
4
HOH
HOH
1048
A
HOH
228
4
HOH
HOH
1049
A
HOH
230
4
HOH
HOH
1050
A
HOH
234
4
HOH
HOH
1051
A
HOH
235
4
HOH
HOH
1052
A
HOH
236
4
HOH
HOH
1053
A
HOH
239
4
HOH
HOH
1054
A
HOH
240
4
HOH
HOH
1055
A
HOH
241
4
HOH
HOH
1056
A
HOH
242
4
HOH
HOH
1057
A
HOH
243
4
HOH
HOH
1058
A
HOH
245
4
HOH
HOH
1059
A
HOH
246
4
HOH
HOH
1060
A
HOH
247
4
HOH
HOH
1061
A
HOH
248
4
HOH
HOH
1062
A
HOH
249
4
HOH
HOH
1063
A
HOH
250
4
HOH
HOH
1064
A
HOH
251
4
HOH
HOH
1065
A
HOH
254
4
HOH
HOH
1066
A
HOH
255
4
HOH
HOH
1067
A
HOH
256
4
HOH
HOH
1068
A
HOH
257
4
HOH
HOH
1069
A
HOH
259
4
HOH
HOH
1070
A
HOH
260
4
HOH
HOH
1071
A
HOH
261
4
HOH
HOH
1072
A
HOH
262
4
HOH
HOH
1073
A
HOH
263
4
HOH
HOH
1074
A
HOH
266
4
HOH
HOH
1075
A
HOH
267
4
HOH
HOH
1076
A
HOH
271
4
HOH
HOH
1077
A
HOH
272
4
HOH
HOH
1078
A
HOH
273
4
HOH
HOH
1079
A
HOH
274
4
HOH
HOH
1080
A
HOH
275
4
HOH
HOH
1081
A
HOH
278
4
HOH
HOH
1082
A
HOH
280
4
HOH
HOH
1083
A
HOH
281
4
HOH
HOH
1084
A
HOH
282
4
HOH
HOH
1085
A
HOH
283
4
HOH
HOH
1086
A
HOH
284
4
HOH
HOH
1087
A
HOH
285
4
HOH
HOH
1088
A
HOH
286
4
HOH
HOH
1089
A
HOH
288
4
HOH
HOH
1090
A
HOH
289
4
HOH
HOH
1091
A
HOH
290
4
HOH
HOH
1092
A
HOH
291
4
HOH
HOH
1093
A
HOH
293
4
HOH
HOH
1094
A
HOH
295
4
HOH
HOH
1095
A
HOH
296
4
HOH
HOH
1096
A
HOH
297
4
HOH
HOH
1097
A
HOH
298
4
HOH
HOH
1098
A
HOH
302
4
HOH
HOH
1099
A
HOH
306
4
HOH
HOH
1100
A
n
1
306
A
n
2
307
A
n
3
308
A
n
4
309
A
GLU
310
n
5
GLU
310
A
LYS
311
n
6
LYS
311
A
SER
312
n
7
SER
312
A
PRO
313
n
8
PRO
313
A
GLN
314
n
9
GLN
314
A
ARG
315
n
10
ARG
315
A
ILE
316
n
11
ILE
316
A
MET
317
n
12
MET
317
A
HIS
318
n
13
HIS
318
A
ILE
319
n
14
ILE
319
A
ASP
320
n
15
ASP
320
A
LEU
321
n
16
LEU
321
A
ASP
322
n
17
ASP
322
A
TYR
323
n
18
TYR
323
A
VAL
324
n
19
VAL
324
A
TYR
325
n
20
TYR
325
A
ASP
326
n
21
ASP
326
A
GLU
327
n
22
GLU
327
A
ASN
328
n
23
ASN
328
A
LEU
329
n
24
LEU
329
A
GLN
330
n
25
GLN
330
A
GLN
331
n
26
GLN
331
A
MET
332
n
27
MET
332
A
ASP
333
n
28
ASP
333
A
ARG
334
n
29
ARG
334
A
ASN
335
n
30
ASN
335
A
ILE
336
n
31
ILE
336
A
ASP
337
n
32
ASP
337
A
VAL
338
n
33
VAL
338
A
LEU
339
n
34
LEU
339
A
ILE
340
n
35
ILE
340
A
GLN
341
n
36
GLN
341
A
ARG
342
n
37
ARG
342
A
VAL
343
n
38
VAL
343
A
LYS
344
n
39
LYS
344
A
ASP
345
n
40
ASP
345
A
MET
346
n
41
MET
346
A
GLN
347
n
42
GLN
347
A
ILE
348
n
43
ILE
348
A
SER
349
n
44
SER
349
A
THR
350
n
45
THR
350
A
VAL
351
n
46
VAL
351
A
TYR
352
n
47
TYR
352
A
LEU
353
n
48
LEU
353
A
GLN
354
n
49
GLN
354
A
ALA
355
n
50
ALA
355
A
PHE
356
n
51
PHE
356
A
ALA
357
n
52
ALA
357
A
ASP
358
n
53
ASP
358
A
PRO
359
n
54
PRO
359
A
ASP
360
n
55
ASP
360
A
GLY
361
n
56
GLY
361
A
ASP
362
n
57
ASP
362
A
GLY
363
n
58
GLY
363
A
LEU
364
n
59
LEU
364
A
VAL
365
n
60
VAL
365
A
LYS
366
n
61
LYS
366
A
GLU
367
n
62
GLU
367
A
VAL
368
n
63
VAL
368
A
TRP
369
n
64
TRP
369
A
PHE
370
n
65
PHE
370
A
PRO
371
n
66
PRO
371
A
ASN
372
n
67
ASN
372
A
ARG
373
n
68
ARG
373
A
LEU
374
n
69
LEU
374
A
LEU
375
n
70
LEU
375
A
PRO
376
n
71
PRO
376
A
MET
377
n
72
MET
377
A
LYS
378
n
73
LYS
378
A
ALA
379
n
74
ALA
379
A
ASP
380
n
75
ASP
380
A
ILE
381
n
76
ILE
381
A
PHE
382
n
77
PHE
382
A
SER
383
n
78
SER
383
A
ARG
384
n
79
ARG
384
A
VAL
385
n
80
VAL
385
A
ALA
386
n
81
ALA
386
A
TRP
387
n
82
TRP
387
A
GLN
388
n
83
GLN
388
A
LEU
389
n
84
LEU
389
A
ARG
390
n
85
ARG
390
A
THR
391
n
86
THR
391
A
ARG
392
n
87
ARG
392
A
SER
393
n
88
SER
393
A
GLY
394
n
89
GLY
394
A
VAL
395
n
90
VAL
395
A
ASN
396
n
91
ASN
396
A
ILE
397
n
92
ILE
397
A
TYR
398
n
93
TYR
398
A
ALA
399
n
94
ALA
399
A
TRP
400
n
95
TRP
400
A
MET
401
n
96
MET
401
A
PRO
402
n
97
PRO
402
A
VAL
403
n
98
VAL
403
A
LEU
404
n
99
LEU
404
A
SER
405
n
100
SER
405
A
TRP
406
n
101
TRP
406
A
ASP
407
n
102
ASP
407
A
LEU
408
n
103
LEU
408
A
ASP
409
n
104
ASP
409
A
PRO
410
n
105
PRO
410
A
THR
411
n
106
THR
411
A
LEU
412
n
107
LEU
412
A
THR
413
n
108
THR
413
A
ARG
414
n
109
ARG
414
A
VAL
415
n
110
VAL
415
A
LYS
416
n
111
LYS
416
A
TYR
417
n
112
TYR
417
A
LEU
418
n
113
LEU
418
A
PRO
419
n
114
PRO
419
A
THR
420
n
115
THR
420
A
GLY
421
n
116
GLY
421
A
GLU
422
n
117
GLU
422
A
LYS
423
n
118
LYS
423
A
LYS
424
n
119
LYS
424
A
ALA
425
n
120
ALA
425
A
GLN
426
n
121
GLN
426
A
ILE
427
n
122
ILE
427
A
HIS
428
n
123
HIS
428
A
PRO
429
n
124
PRO
429
A
GLU
430
n
125
GLU
430
A
GLN
431
n
126
GLN
431
A
TYR
432
n
127
TYR
432
A
HIS
433
n
128
HIS
433
A
ARG
434
n
129
ARG
434
A
LEU
435
n
130
LEU
435
A
SER
436
n
131
SER
436
A
PRO
437
n
132
PRO
437
A
PHE
438
n
133
PHE
438
A
ASP
439
n
134
ASP
439
A
ASP
440
n
135
ASP
440
A
ARG
441
n
136
ARG
441
A
VAL
442
n
137
VAL
442
A
ARG
443
n
138
ARG
443
A
ALA
444
n
139
ALA
444
A
GLN
445
n
140
GLN
445
A
VAL
446
n
141
VAL
446
A
GLY
447
n
142
GLY
447
A
MET
448
n
143
MET
448
A
LEU
449
n
144
LEU
449
A
TYR
450
n
145
TYR
450
A
GLU
451
n
146
GLU
451
A
ASP
452
n
147
ASP
452
A
LEU
453
n
148
LEU
453
A
ALA
454
n
149
ALA
454
A
GLY
455
n
150
GLY
455
A
HIS
456
n
151
HIS
456
A
ALA
457
n
152
ALA
457
A
ALA
458
n
153
ALA
458
A
PHE
459
n
154
PHE
459
A
ASP
460
n
155
ASP
460
A
GLY
461
n
156
GLY
461
A
ILE
462
n
157
ILE
462
A
LEU
463
n
158
LEU
463
A
PHE
464
n
159
PHE
464
A
HIS
465
n
160
HIS
465
A
ASP
466
n
161
ASP
466
A
ASP
467
n
162
ASP
467
A
ALA
468
n
163
ALA
468
A
LEU
469
n
164
LEU
469
A
LEU
470
n
165
LEU
470
A
SER
471
n
166
SER
471
A
ASP
472
n
167
ASP
472
A
TYR
473
n
168
TYR
473
A
GLU
474
n
169
GLU
474
A
ASP
475
n
170
ASP
475
A
ALA
476
n
171
ALA
476
A
SER
477
n
172
SER
477
A
ALA
478
n
173
ALA
478
A
PRO
479
n
174
PRO
479
A
ALA
480
n
175
ALA
480
A
ILE
481
n
176
ILE
481
A
THR
482
n
177
THR
482
A
ALA
483
n
178
ALA
483
A
TYR
484
n
179
TYR
484
A
GLN
485
n
180
GLN
485
A
GLN
486
n
181
GLN
486
A
ALA
487
n
182
ALA
487
A
GLY
488
n
183
GLY
488
A
PHE
489
n
184
PHE
489
A
SER
490
n
185
SER
490
A
GLY
491
n
186
GLY
491
A
SER
492
n
187
SER
492
A
LEU
493
n
188
LEU
493
A
SER
494
n
189
SER
494
A
GLU
495
n
190
GLU
495
A
ILE
496
n
191
ILE
496
A
ARG
497
n
192
ARG
497
A
GLN
498
n
193
GLN
498
A
ASN
499
n
194
ASN
499
A
PRO
500
n
195
PRO
500
A
GLU
501
n
196
GLU
501
A
GLN
502
n
197
GLN
502
A
PHE
503
n
198
PHE
503
A
LYS
504
n
199
LYS
504
A
GLN
505
n
200
GLN
505
A
TRP
506
n
201
TRP
506
A
ALA
507
n
202
ALA
507
A
ARG
508
n
203
ARG
508
A
PHE
509
n
204
PHE
509
A
LYS
510
n
205
LYS
510
A
SER
511
n
206
SER
511
A
ARG
512
n
207
ARG
512
A
ALA
513
n
208
ALA
513
A
LEU
514
n
209
LEU
514
A
THR
515
n
210
THR
515
A
ASP
516
n
211
ASP
516
A
PHE
517
n
212
PHE
517
A
THR
518
n
213
THR
518
A
LEU
519
n
214
LEU
519
A
GLU
520
n
215
GLU
520
A
LEU
521
n
216
LEU
521
A
SER
522
n
217
SER
522
A
ALA
523
n
218
ALA
523
A
ARG
524
n
219
ARG
524
A
VAL
525
n
220
VAL
525
A
LYS
526
n
221
LYS
526
A
ALA
527
n
222
ALA
527
A
ILE
528
n
223
ILE
528
A
ARG
529
n
224
ARG
529
A
GLY
530
n
225
GLY
530
A
PRO
531
n
226
PRO
531
A
HIS
532
n
227
HIS
532
A
ILE
533
n
228
ILE
533
A
LYS
534
n
229
LYS
534
A
THR
535
n
230
THR
535
A
ALA
536
n
231
ALA
536
A
ARG
537
n
232
ARG
537
A
ASN
538
n
233
ASN
538
A
ILE
539
n
234
ILE
539
A
PHE
540
n
235
PHE
540
A
ALA
541
n
236
ALA
541
A
LEU
542
n
237
LEU
542
A
PRO
543
n
238
PRO
543
A
VAL
544
n
239
VAL
544
A
ILE
545
n
240
ILE
545
A
GLN
546
n
241
GLN
546
A
PRO
547
n
242
PRO
547
A
GLU
548
n
243
GLU
548
A
SER
549
n
244
SER
549
A
GLU
550
n
245
GLU
550
A
ALA
551
n
246
ALA
551
A
TRP
552
n
247
TRP
552
A
PHE
553
n
248
PHE
553
A
ALA
554
n
249
ALA
554
A
GLN
555
n
250
GLN
555
A
ASN
556
n
251
ASN
556
A
TYR
557
n
252
TYR
557
A
ALA
558
n
253
ALA
558
A
ASP
559
n
254
ASP
559
A
PHE
560
n
255
PHE
560
A
LEU
561
n
256
LEU
561
A
LYS
562
n
257
LYS
562
A
SER
563
n
258
SER
563
A
TYR
564
n
259
TYR
564
A
ASP
565
n
260
ASP
565
A
TRP
566
n
261
TRP
566
A
THR
567
n
262
THR
567
A
ALA
568
n
263
ALA
568
A
ILE
569
n
264
ILE
569
A
MET
570
n
265
MET
570
A
ALA
571
n
266
ALA
571
A
MET
572
n
267
MET
572
A
PRO
573
n
268
PRO
573
A
TYR
574
n
269
TYR
574
A
LEU
575
n
270
LEU
575
A
GLU
576
n
271
GLU
576
A
GLY
577
n
272
GLY
577
A
VAL
578
n
273
VAL
578
A
ALA
579
n
274
ALA
579
A
GLU
580
n
275
GLU
580
A
LYS
581
n
276
LYS
581
A
SER
582
n
277
SER
582
A
ALA
583
n
278
ALA
583
A
ASP
584
n
279
ASP
584
A
GLN
585
n
280
GLN
585
A
TRP
586
n
281
TRP
586
A
LEU
587
n
282
LEU
587
A
ILE
588
n
283
ILE
588
A
GLN
589
n
284
GLN
589
A
LEU
590
n
285
LEU
590
A
THR
591
n
286
THR
591
A
ASN
592
n
287
ASN
592
A
GLN
593
n
288
GLN
593
A
ILE
594
n
289
ILE
594
A
LYS
595
n
290
LYS
595
A
ASN
596
n
291
ASN
596
A
ILE
597
n
292
ILE
597
A
PRO
598
n
293
PRO
598
A
GLN
599
n
294
GLN
599
A
ALA
600
n
295
ALA
600
A
LYS
601
n
296
LYS
601
A
ASP
602
n
297
ASP
602
A
LYS
603
n
298
LYS
603
A
SER
604
n
299
SER
604
A
ILE
605
n
300
ILE
605
A
LEU
606
n
301
LEU
606
A
GLU
607
n
302
GLU
607
A
LEU
608
n
303
LEU
608
A
GLN
609
n
304
GLN
609
A
ALA
610
n
305
ALA
610
A
GLN
611
n
306
GLN
611
A
ASN
612
n
307
ASN
612
A
TRP
613
n
308
TRP
613
A
GLN
614
n
309
GLN
614
A
LYS
615
n
310
LYS
615
A
ASN
616
n
311
ASN
616
A
GLY
617
n
312
GLY
617
A
GLN
618
n
313
GLN
618
A
HIS
619
n
314
HIS
619
A
GLN
620
n
315
GLN
620
A
ALA
621
n
316
ALA
621
A
ILE
622
n
317
ILE
622
A
SER
623
n
318
SER
623
A
SER
624
n
319
SER
624
A
GLN
625
n
320
GLN
625
A
GLN
626
n
321
GLN
626
A
LEU
627
n
322
LEU
627
A
ALA
628
n
323
ALA
628
A
HIS
629
n
324
HIS
629
A
TRP
630
n
325
TRP
630
A
MET
631
n
326
MET
631
A
SER
632
n
327
SER
632
A
LEU
633
n
328
LEU
633
A
LEU
634
n
329
LEU
634
A
GLN
635
n
330
GLN
635
A
LEU
636
n
331
LEU
636
A
ASN
637
n
332
ASN
637
A
GLY
638
n
333
GLY
638
A
VAL
639
n
334
VAL
639
A
LYS
640
n
335
LYS
640
A
ASN
641
n
336
ASN
641
A
TYR
642
n
337
TYR
642
A
GLY
643
n
338
GLY
643
A
TYR
644
n
339
TYR
644
A
TYR
645
n
340
TYR
645
A
PRO
646
n
341
PRO
646
A
ASP
647
n
342
ASP
647
A
ASN
648
n
343
ASN
648
A
PHE
649
n
344
PHE
649
A
LEU
650
n
345
LEU
650
A
HIS
651
n
346
HIS
651
A
ASN
652
n
347
ASN
652
A
GLN
653
n
348
GLN
653
A
PRO
654
n
349
PRO
654
A
GLU
655
n
350
GLU
655
A
ILE
656
n
351
ILE
656
A
ASP
657
n
352
ASP
657
A
LEU
658
n
353
LEU
658
A
ILE
659
n
354
ILE
659
A
ARG
660
n
355
ARG
660
A
PRO
661
n
356
PRO
661
A
GLU
662
n
357
GLU
662
A
PHE
663
n
358
PHE
663
A
SER
664
n
359
SER
664
A
THR
665
n
360
THR
665
A
ALA
666
n
361
ALA
666
A
TRP
667
n
362
TRP
667
A
TYR
668
n
363
TYR
668
A
n
364
669
A
n
365
670
A
n
366
671
A
n
367
672
A
1.6808
-2.1573
0.9104
3.0873
-1.6156
8.6738
0.0871
0.0977
-0.0148
-0.1305
-0.0470
0.0484
-0.0076
0.2066
-0.0553
0.1234
-0.0189
0.0430
0.1669
0.0234
0.2253
refined
-1.4360
88.5909
5.6216
X-RAY DIFFRACTION
1.0147
-1.0211
-0.2272
2.9371
0.2825
1.4878
0.1337
0.1550
0.0428
-0.1821
-0.1424
0.0793
-0.0248
-0.0532
0.0013
0.1378
0.0078
-0.0055
0.1575
0.0205
0.1518
refined
0.5930
87.8348
-1.0951
X-RAY DIFFRACTION
0.8489
-0.4527
0.0724
1.6627
0.1519
1.0460
0.0802
-0.0019
-0.0726
-0.1130
-0.1303
-0.0000
0.1182
0.0278
0.0422
0.1470
-0.0056
0.0014
0.2157
0.0039
0.1865
refined
9.0181
66.0885
6.7664
X-RAY DIFFRACTION
0.9797
1.8090
-2.1193
5.0705
-5.6352
6.5356
0.1014
-0.0802
0.0207
0.1677
-0.4088
-0.4903
-0.0113
0.3982
0.3407
0.1387
-0.0150
-0.0203
0.2351
0.0386
0.2491
refined
16.3711
70.3877
12.2131
X-RAY DIFFRACTION
2.5650
-1.4413
-0.5927
2.6120
0.4465
1.9027
-0.1885
-0.1449
-0.1465
0.4046
0.0750
0.1004
0.0770
-0.0043
0.1068
0.1823
-0.0228
-0.0133
0.1598
0.0070
0.1322
refined
3.0307
76.1417
21.8978
X-RAY DIFFRACTION
3.7242
-1.4585
-1.5177
3.6104
-0.6199
2.5172
0.0178
0.1202
-0.3377
0.0333
-0.0068
0.2986
0.0690
-0.1897
-0.0540
0.1802
-0.0320
0.0088
0.1453
-0.0068
0.1670
refined
-5.8341
83.0104
20.2285
X-RAY DIFFRACTION
5.3686
-1.7708
0.8565
4.5452
-1.0756
3.3863
-0.0878
-0.0816
0.4079
0.1549
0.0951
0.0740
-0.4095
-0.0718
-0.0349
0.1691
-0.0156
0.0295
0.1315
0.0099
0.1626
refined
-7.0266
93.2725
15.5866
X-RAY DIFFRACTION
A
0
A
0
X-RAY DIFFRACTION
1
chain 'A' and (resid 310 through 328 )
A
0
A
0
X-RAY DIFFRACTION
2
chain 'A' and (resid 329 through 391 )
A
0
A
0
X-RAY DIFFRACTION
3
chain 'A' and (resid 392 through 502 )
A
0
A
0
X-RAY DIFFRACTION
4
chain 'A' and (resid 503 through 529 )
A
0
A
0
X-RAY DIFFRACTION
5
chain 'A' and (resid 530 through 595 )
A
0
A
0
X-RAY DIFFRACTION
6
chain 'A' and (resid 596 through 637 )
A
0
A
0
X-RAY DIFFRACTION
7
chain 'A' and (resid 638 through 668 )
author_and_software_defined_assembly
PISA
1
monomeric
1730
18
15620
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
319
A
N
ILE
14
A
O
TYR
352
A
O
TYR
47
A
N
LEU
353
A
N
LEU
48
A
O
TYR
398
A
O
TYR
93
A
N
ALA
399
A
N
ALA
94
A
O
GLY
461
A
O
GLY
156
A
N
PHE
464
A
N
PHE
159
A
O
ALA
536
A
O
ALA
231
A
N
ILE
539
A
N
ILE
234
A
O
MET
570
A
O
MET
265
A
N
ILE
569
A
N
ILE
264
A
O
GLU
607
A
O
GLU
302
A
N
LEU
608
A
N
LEU
303
A
O
GLY
643
A
O
GLY
338
A
O
TYR
644
A
O
TYR
339
A
N
HIS
318
A
N
HIS
13
A
N
ASN
612
A
N
ASN
307
A
O
GLN
620
A
O
GLN
315
1
A
CG
LYS
311
A
CG
LYS
6
1
Y
1
A
CD
LYS
311
A
CD
LYS
6
1
Y
1
A
CE
LYS
311
A
CE
LYS
6
1
Y
1
A
NZ
LYS
311
A
NZ
LYS
6
1
Y
1
A
CG
LYS
423
A
CG
LYS
118
1
Y
1
A
CD
LYS
423
A
CD
LYS
118
1
Y
1
A
CE
LYS
423
A
CE
LYS
118
1
Y
1
A
NZ
LYS
423
A
NZ
LYS
118
1
Y
1
A
CG
LYS
615
A
CG
LYS
310
1
Y
1
A
CD
LYS
615
A
CD
LYS
310
1
Y
1
A
CE
LYS
615
A
CE
LYS
310
1
Y
1
A
NZ
LYS
615
A
NZ
LYS
310
1
Y
1
A
GLY
306
A
GLY
1
1
Y
1
A
SER
307
A
SER
2
1
Y
1
A
HIS
308
A
HIS
3
1
Y
1
A
MET
309
A
MET
4
1
Y
1
A
PRO
669
A
PRO
364
1
Y
1
A
LYS
670
A
LYS
365
1
Y
1
A
ASN
671
A
ASN
366
1
Y
1
A
ASP
672
A
ASP
367
1
Y
1
A
A
OD1
NH2
ASP
ARG
333
384
2.18
1
A
ILE
348
-128.87
-169.88
1
A
ASP
409
-34.20
126.01
1
A
GLN
599
72.11
-0.66
104.750
29.9273
13.530
0.1953
0.1568
0.1585
1.6510
37.2340
2000
44475
46475
4.3000
99.4500
0.1600
Random
1
FREE R-VALUE
1.340
MOLECULAR REPLACEMENT
19.0100
0.9000
1.1100
PDB entry 4P7L
ML
FLAT BULK SOLVENT MODEL
1.6510
37.2340
300
3293
65.24
40.20
68
0
2925
359
0.006
3071
1.025
4177
0.046
451
0.005
539
13.592
1118
0.2551
0.1979
1.6926
139
3108
3247
14
98.0000
0.2269
0.1872
1.7384
141
3107
3248
14
100.0000
0.2236
0.1802
1.7895
139
3097
3236
14
99.0000
0.2107
0.1676
1.8473
140
3127
3267
14
99.0000
0.2281
0.1647
1.9133
141
3138
3279
14
100.0000
0.2214
0.1635
1.9899
141
3142
3283
14
99.0000
0.2042
0.1643
2.0805
142
3120
3262
14
99.0000
0.1958
0.1635
2.1901
141
3160
3301
14
100.0000
0.1855
0.1569
2.3273
144
3197
3341
14
100.0000
0.1824
0.1639
2.5070
144
3190
3334
14
100.0000
0.2056
0.1773
2.7592
143
3188
3331
14
100.0000
0.2066
0.1635
3.1583
145
3226
3371
14
100.0000
0.1860
0.1455
3.9784
146
3270
3416
14
100.0000
0.1788
0.1397
37.2432
154
3405
3559
14
100.0000
23.770
1.65
50.0
4P7Q
46798
-3
0.077
1
64.8
14.1
99.5
0.592
1.65
1.71
5.2
1
13.9
98.5
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
model building
Coot
data extraction
PDB_EXTRACT
3.14
phasing
PHASER
refinement
PHENIX
(phenix.refine: dev_1615)
Structure of Escherichia coli PgaB C-terminal domain in complex with N-acetylglucosamine
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
4
N
N
biological unit is the same as asym.
A
ASN
328
A
ASN
23
HELX_P
A
GLN
347
A
GLN
42
1
AA1
20
A
ILE
381
A
ILE
76
HELX_P
A
ARG
392
A
ARG
87
1
AA2
12
A
ASP
439
A
ASP
134
HELX_P
A
ALA
457
A
ALA
152
1
AA3
19
A
SER
477
A
SER
172
HELX_P
A
ALA
487
A
ALA
182
1
AA4
11
A
SER
492
A
SER
187
HELX_P
A
GLN
498
A
GLN
193
1
AA5
7
A
GLN
502
A
GLN
197
HELX_P
A
GLY
530
A
GLY
225
1
AA6
29
A
PHE
540
A
PHE
235
HELX_P
A
GLN
546
A
GLN
241
1
AA7
7
A
SER
549
A
SER
244
HELX_P
A
ALA
554
A
ALA
249
1
AA8
6
A
ASN
556
A
ASN
251
HELX_P
A
TYR
564
A
TYR
259
1
AA9
9
A
ALA
579
A
ALA
274
HELX_P
A
LYS
581
A
LYS
276
5
AB1
3
A
SER
582
A
SER
277
HELX_P
A
ASN
596
A
ASN
291
1
AB2
15
A
GLN
599
A
GLN
294
HELX_P
A
ASP
602
A
ASP
297
5
AB3
4
A
SER
623
A
SER
318
HELX_P
A
ASN
637
A
ASN
332
1
AB4
15
A
ASN
648
A
ASN
343
HELX_P
A
ASN
652
A
ASN
347
5
AB5
5
A
GLU
655
A
GLU
350
HELX_P
A
SER
664
A
SER
359
1
AB6
10
HYDROLASE
beta alpha barrel, carbohydrate binding, glycosyl hydrolase fold, complex, HYDROLASE
A
SER
312
A
SER
7
1
A
PRO
313
A
PRO
8
-9.04
A
GLU
474
A
GLU
169
1
A
ASP
475
A
ASP
170
-17.54
A
TYR
645
A
TYR
340
1
A
PRO
646
A
PRO
341
-4.89
A
GLN
653
A
GLN
348
1
A
PRO
654
A
PRO
349
-0.60
PGAB_ECOLI
UNP
1
310
P75906
EKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRVAWQL
RTRSGVNIYAWMPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDAL
LSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIFALPVIQPES
EAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQAKDKSILELQAQNWQKNGQHQAISSQQLAH
WMSLLQLNGVKNYGYYPDNFLHNQPEIDLIRPEFSTAWYPKND
310
672
4P7Q
310
672
P75906
A
1
5
367
1
expression tag
GLY
306
4P7Q
A
P75906
UNP
1
1
expression tag
SER
307
4P7Q
A
P75906
UNP
2
1
expression tag
HIS
308
4P7Q
A
P75906
UNP
3
1
expression tag
MET
309
4P7Q
A
P75906
UNP
4
9
2
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
ARG
315
A
ARG
10
A
ILE
319
A
ILE
14
A
THR
350
A
THR
45
A
GLN
354
A
GLN
49
A
ASN
396
A
ASN
91
A
MET
401
A
MET
96
A
GLY
461
A
GLY
156
A
PHE
464
A
PHE
159
A
LYS
534
A
LYS
229
A
ILE
539
A
ILE
234
A
TRP
566
A
TRP
261
A
MET
570
A
MET
265
A
SER
604
A
SER
299
A
GLN
609
A
GLN
304
A
TYR
642
A
TYR
337
A
TYR
645
A
TYR
340
A
ARG
315
A
ARG
10
A
ILE
319
A
ILE
14
A
GLN
611
A
GLN
306
A
ASN
612
A
ASN
307
A
GLN
620
A
GLN
315
A
ALA
621
A
ALA
316
19
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