0.023864
0.000000
0.000000
-0.000000
0.023864
0.000000
0.000000
-0.000000
0.009290
0.00000
0.00000
0.00000
Clements, J.H.
Martin, S.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
41.905
41.905
107.642
C7 H13 N O2
143.184
n
1-aminocyclohexanecarboxylic acid
peptide linking
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C12 H13 N O2
203.237
3-(1-methyl-1H-indol-3-yl)propanoic acid
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H12 N O6 P
261.168
n
O-PHOSPHOTYROSINE
PHOSPHONOTYROSINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
C
N
3
N
C
N
4
N
C
N
5
N
C
N
6
N
C
N
7
N
N
N
8
N
C
N
9
N
C
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
O
N
22
N
H
N
23
N
H
N
24
N
C
N
25
N
O
N
26
N
O
N
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
N
N
32
S
C
N
33
N
C
N
34
N
O
N
35
N
C
N
36
N
O
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
N
N
45
S
C
N
46
N
C
N
47
N
O
N
48
N
C
N
49
N
C
N
50
N
C
N
51
N
N
N
52
N
C
N
53
N
N
N
54
N
N
N
55
N
O
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
N
N
72
S
C
N
73
N
C
N
74
N
O
N
75
N
C
N
76
N
C
N
77
N
O
N
78
N
N
N
79
N
O
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
CL
N
105
N
N
N
106
S
C
N
107
N
C
N
108
N
O
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
S
C
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
C
N
155
N
O
N
156
N
C
N
157
N
O
N
158
N
C
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
N
N
169
S
C
N
170
N
C
N
171
N
O
N
172
N
C
Y
173
N
C
Y
174
N
N
Y
175
N
C
Y
176
N
C
Y
177
N
N
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
S
C
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
N
C
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
N
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
N
266
N
C
N
267
N
S
N
268
N
C
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
N
N
282
N
H
N
283
N
H
N
284
N
C
Y
285
N
N
Y
286
N
C
Y
287
N
C
Y
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
N
340
N
C
N
341
N
C
N
342
N
O
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
P
N
366
N
O
N
367
N
O
N
368
N
O
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
N
N
382
S
C
N
383
N
C
N
384
N
O
N
385
N
C
N
386
N
O
N
387
N
O
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
R
C
N
400
N
O
N
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
N
N
413
S
C
N
414
N
C
N
415
N
O
N
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
N
Y
421
N
C
Y
422
N
C
Y
423
N
C
Y
424
N
C
Y
425
N
C
N
426
N
O
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
N
N
440
S
C
N
441
N
C
N
442
N
O
N
443
N
C
Y
444
N
C
Y
445
N
C
Y
446
N
C
Y
447
N
C
Y
448
N
C
Y
449
N
C
N
450
N
O
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
N
N
464
S
C
N
465
N
C
N
466
N
O
N
467
N
C
N
468
N
C
N
469
N
C
N
470
N
O
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
doub
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
doub
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
doub
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
doub
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
Y
169
N
sing
Y
170
N
doub
Y
171
N
doub
N
172
N
sing
Y
173
N
sing
N
174
N
sing
Y
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
Y
268
N
doub
Y
269
N
sing
Y
270
N
sing
Y
271
N
doub
Y
272
N
doub
Y
273
N
sing
Y
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
Y
278
N
sing
Y
279
N
doub
N
280
N
doub
Y
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
doub
N
313
N
sing
Y
314
N
doub
N
315
N
sing
Y
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
Y
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
Y
434
N
doub
Y
435
N
sing
Y
436
N
sing
N
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
doub
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
UK
Bioorg.Med.Chem.Lett.
BMCLE8
1127
1464-3405
24
3164
3167
10.1016/j.bmcl.2014.04.114
24856058
Protein-ligand interactions: Probing the energetics of a putative cation-pi interaction.
2014
10.2210/pdb4p9z/pdb
pdb_00004p9z
100
1
IMAGE PLATE
2010-12-10
RIGAKU RAXIS IV++
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
13758.543
Growth factor receptor-bound protein 2
1
man
polymer
683.669
NMI-PTR-02K-ASN-NH2
1
syn
polymer
92.094
GLYCEROL
1
syn
non-polymer
59.044
ACETATE ION
2
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
66
nat
water
Adapter protein GRB2,Protein Ash,SH2/SH3 adapter GRB2
no
no
IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV
DYHRSTSVSRNQQIFLRDIEQVPQQPTYVQAHHHHHH
IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV
DYHRSTSVSRNQQIFLRDIEQVPQQPTYVQAHHHHHH
A
polypeptide(L)
no
yes
(NMI)(PTR)(02K)N(NH2)
XYANX
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
117
GRB2, ASH
9606
Homo sapiens
562
Escherichia coli
SG13009
Plasmid
Biological sequence
PQE-60
1
1.64
24.82
VAPOR DIFFUSION, HANGING DROP
8.5
0.2 M sodium acetate trihydrate, 0.1 M TRIS hydrochloride, 30% w/v polyethylene glycol 4000
296
citation
entity_src_gen
pdbx_database_status
pdbx_entity_src_syn
pdbx_struct_assembly
pdbx_struct_oper_list
struct_keywords
pdbx_audit_support
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
refine_hist
repository
Initial release
Database references
Database references
Derived calculations
Other
Source and taxonomy
Structure summary
Author supporting evidence
Author supporting evidence
Data collection
Database references
Refinement description
1
0
2014-06-18
1
1
2014-07-16
1
2
2017-08-09
1
3
2017-09-27
1
4
2019-11-27
1
5
2023-12-27
_citation.journal_id_CSD
_entity_src_gen.pdbx_alt_source_flag
_pdbx_database_status.pdb_format_compatible
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_oper_list.symmetry_operation
_struct_keywords.text
_pdbx_audit_support.funding_organization
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_refine_hist.number_atoms_solvent
_refine_hist.number_atoms_total
_refine_hist.pdbx_number_atoms_ligand
_refine_hist.pdbx_number_atoms_nucleic_acid
_refine_hist.pdbx_number_atoms_protein
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM 84965
United States
National Science Foundation (NSF, United States)
CHE 0750329
United States
Robert A. Welch Foundation
F-652
3S8O contains the same protein complexed with a similar ligand
N
RCSB
Y
RCSB
2014-04-06
REL
REL
GOL
GLYCEROL
ACT
ACETATE ION
CL
CHLORIDE ION
HOH
water
32630
synthetic construct
sample
1
5
GOL
1
3
GOL
GOL
201
A
ACT
2
4
ACT
ACT
202
A
ACT
3
4
ACT
ACT
203
A
CL
4
5
CL
CL
204
A
HOH
53
6
HOH
HOH
301
A
HOH
52
6
HOH
HOH
302
A
HOH
37
6
HOH
HOH
303
A
HOH
36
6
HOH
HOH
304
A
HOH
22
6
HOH
HOH
305
A
HOH
49
6
HOH
HOH
306
A
HOH
16
6
HOH
HOH
307
A
HOH
21
6
HOH
HOH
308
A
HOH
13
6
HOH
HOH
309
A
HOH
11
6
HOH
HOH
310
A
HOH
32
6
HOH
HOH
311
A
HOH
43
6
HOH
HOH
312
A
HOH
46
6
HOH
HOH
313
A
HOH
20
6
HOH
HOH
314
A
HOH
19
6
HOH
HOH
315
A
HOH
12
6
HOH
HOH
316
A
HOH
55
6
HOH
HOH
317
A
HOH
66
6
HOH
HOH
318
A
HOH
4
6
HOH
HOH
319
A
HOH
44
6
HOH
HOH
320
A
HOH
18
6
HOH
HOH
321
A
HOH
48
6
HOH
HOH
322
A
HOH
33
6
HOH
HOH
323
A
HOH
31
6
HOH
HOH
324
A
HOH
35
6
HOH
HOH
325
A
HOH
42
6
HOH
HOH
326
A
HOH
41
6
HOH
HOH
327
A
HOH
34
6
HOH
HOH
328
A
HOH
7
6
HOH
HOH
329
A
HOH
63
6
HOH
HOH
330
A
HOH
2
6
HOH
HOH
331
A
HOH
38
6
HOH
HOH
332
A
HOH
10
6
HOH
HOH
333
A
HOH
5
6
HOH
HOH
334
A
HOH
15
6
HOH
HOH
335
A
HOH
50
6
HOH
HOH
336
A
HOH
47
6
HOH
HOH
337
A
HOH
1
6
HOH
HOH
338
A
HOH
64
6
HOH
HOH
339
A
HOH
59
6
HOH
HOH
340
A
HOH
58
6
HOH
HOH
341
A
HOH
54
6
HOH
HOH
342
A
HOH
61
6
HOH
HOH
343
A
HOH
3
6
HOH
HOH
344
A
HOH
8
6
HOH
HOH
345
A
HOH
9
6
HOH
HOH
346
A
HOH
14
6
HOH
HOH
347
A
HOH
17
6
HOH
HOH
348
A
HOH
23
6
HOH
HOH
349
A
HOH
24
6
HOH
HOH
350
A
HOH
25
6
HOH
HOH
351
A
HOH
26
6
HOH
HOH
352
A
HOH
27
6
HOH
HOH
353
A
HOH
29
6
HOH
HOH
354
A
HOH
30
6
HOH
HOH
355
A
HOH
39
6
HOH
HOH
356
A
HOH
40
6
HOH
HOH
357
A
HOH
45
6
HOH
HOH
358
A
HOH
56
6
HOH
HOH
359
A
HOH
60
6
HOH
HOH
360
A
HOH
65
6
HOH
HOH
361
A
HOH
67
6
HOH
HOH
362
A
HOH
62
6
HOH
HOH
101
B
HOH
6
6
HOH
HOH
102
B
HOH
28
6
HOH
HOH
103
B
HOH
51
6
HOH
HOH
104
B
n
1
53
A
GLU
54
n
2
GLU
54
A
MET
55
n
3
MET
55
A
LYS
56
n
4
LYS
56
A
PRO
57
n
5
PRO
57
A
HIS
58
n
6
HIS
58
A
PRO
59
n
7
PRO
59
A
TRP
60
n
8
TRP
60
A
PHE
61
n
9
PHE
61
A
PHE
62
n
10
PHE
62
A
GLY
63
n
11
GLY
63
A
LYS
64
n
12
LYS
64
A
ILE
65
n
13
ILE
65
A
PRO
66
n
14
PRO
66
A
ARG
67
n
15
ARG
67
A
ALA
68
n
16
ALA
68
A
LYS
69
n
17
LYS
69
A
ALA
70
n
18
ALA
70
A
GLU
71
n
19
GLU
71
A
GLU
72
n
20
GLU
72
A
MET
73
n
21
MET
73
A
LEU
74
n
22
LEU
74
A
SER
75
n
23
SER
75
A
LYS
76
n
24
LYS
76
A
GLN
77
n
25
GLN
77
A
ARG
78
n
26
ARG
78
A
HIS
79
n
27
HIS
79
A
ASP
80
n
28
ASP
80
A
GLY
81
n
29
GLY
81
A
ALA
82
n
30
ALA
82
A
PHE
83
n
31
PHE
83
A
LEU
84
n
32
LEU
84
A
ILE
85
n
33
ILE
85
A
ARG
86
n
34
ARG
86
A
GLU
87
n
35
GLU
87
A
SER
88
n
36
SER
88
A
GLU
89
n
37
GLU
89
A
SER
90
n
38
SER
90
A
ALA
91
n
39
ALA
91
A
PRO
92
n
40
PRO
92
A
GLY
93
n
41
GLY
93
A
ASP
94
n
42
ASP
94
A
PHE
95
n
43
PHE
95
A
SER
96
n
44
SER
96
A
LEU
97
n
45
LEU
97
A
SER
98
n
46
SER
98
A
VAL
99
n
47
VAL
99
A
LYS
100
n
48
LYS
100
A
PHE
101
n
49
PHE
101
A
GLY
102
n
50
GLY
102
A
ASN
103
n
51
ASN
103
A
ASP
104
n
52
ASP
104
A
VAL
105
n
53
VAL
105
A
GLN
106
n
54
GLN
106
A
HIS
107
n
55
HIS
107
A
PHE
108
n
56
PHE
108
A
LYS
109
n
57
LYS
109
A
VAL
110
n
58
VAL
110
A
LEU
111
n
59
LEU
111
A
ARG
112
n
60
ARG
112
A
ASP
113
n
61
ASP
113
A
GLY
114
n
62
GLY
114
A
ALA
115
n
63
ALA
115
A
GLY
116
n
64
GLY
116
A
LYS
117
n
65
LYS
117
A
TYR
118
n
66
TYR
118
A
PHE
119
n
67
PHE
119
A
LEU
120
n
68
LEU
120
A
TRP
121
n
69
TRP
121
A
VAL
122
n
70
VAL
122
A
VAL
123
n
71
VAL
123
A
LYS
124
n
72
LYS
124
A
PHE
125
n
73
PHE
125
A
ASN
126
n
74
ASN
126
A
SER
127
n
75
SER
127
A
LEU
128
n
76
LEU
128
A
ASN
129
n
77
ASN
129
A
GLU
130
n
78
GLU
130
A
LEU
131
n
79
LEU
131
A
VAL
132
n
80
VAL
132
A
ASP
133
n
81
ASP
133
A
TYR
134
n
82
TYR
134
A
HIS
135
n
83
HIS
135
A
ARG
136
n
84
ARG
136
A
SER
137
n
85
SER
137
A
THR
138
n
86
THR
138
A
SER
139
n
87
SER
139
A
VAL
140
n
88
VAL
140
A
SER
141
n
89
SER
141
A
ARG
142
n
90
ARG
142
A
ASN
143
n
91
ASN
143
A
GLN
144
n
92
GLN
144
A
GLN
145
n
93
GLN
145
A
ILE
146
n
94
ILE
146
A
PHE
147
n
95
PHE
147
A
LEU
148
n
96
LEU
148
A
ARG
149
n
97
ARG
149
A
ASP
150
n
98
ASP
150
A
ILE
151
n
99
ILE
151
A
GLU
152
n
100
GLU
152
A
GLN
153
n
101
GLN
153
A
VAL
154
n
102
VAL
154
A
PRO
155
n
103
PRO
155
A
GLN
156
n
104
GLN
156
A
GLN
157
n
105
GLN
157
A
PRO
158
n
106
PRO
158
A
THR
159
n
107
THR
159
A
TYR
160
n
108
TYR
160
A
VAL
161
n
109
VAL
161
A
GLN
162
n
110
GLN
162
A
n
111
163
A
n
112
164
A
n
113
165
A
n
114
166
A
n
115
167
A
n
116
168
A
n
117
169
A
NMI
1
n
1
NMI
1
B
PTR
2
n
2
PTR
2
B
C6C
3
n
3
02K
3
B
ASN
4
n
4
ASN
4
B
NH2
5
n
5
NH2
5
B
author_defined_assembly
2
dimeric
software_defined_assembly
PISA
4
tetrameric
5860
-50
12250
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_645
y+1,x-1,-z
crystal symmetry operation
41.9050000000
-41.9050000000
0.0000000000
A
O
ASP
104
A
O
ASP
52
A
N
PHE
101
A
N
PHE
49
A
O
SER
98
A
O
SER
46
A
N
LEU
84
A
N
LEU
32
A
N
PHE
83
A
N
PHE
31
A
O
ARG
149
A
O
ARG
97
A
N
LEU
111
A
N
LEU
59
A
O
PHE
119
A
O
PHE
67
A
N
TYR
118
A
N
TYR
66
A
O
PHE
125
A
O
PHE
73
1
A
HOH
302
G
HOH
1
A
N
GLU
54
A
N
GLU
2
1
Y
1
A
CB
GLU
54
A
CB
GLU
2
1
Y
1
A
CG
GLU
54
A
CG
GLU
2
1
Y
1
A
CD
GLU
54
A
CD
GLU
2
1
Y
1
A
OE1
GLU
54
A
OE1
GLU
2
1
Y
1
A
OE2
GLU
54
A
OE2
GLU
2
1
Y
1
A
ILE
53
A
ILE
1
1
Y
1
A
ALA
163
A
ALA
111
1
Y
1
A
HIS
164
A
HIS
112
1
Y
1
A
HIS
165
A
HIS
113
1
Y
1
A
HIS
166
A
HIS
114
1
Y
1
A
HIS
167
A
HIS
115
1
Y
1
A
HIS
168
A
HIS
116
1
Y
1
A
HIS
169
A
HIS
117
1
Y
1
B
PTR
2
11.13
1
B
B
C
N
PTR
02K
2
3
0.152
0.023
1.336
1.488
Y
1
B
B
C
N
02K
ASN
3
4
0.205
0.023
1.336
1.541
Y
1
A
MET
55
37.89
69.38
1
A
TRP
121
-128.56
-66.26
1
A
GLN
153
127.55
-60.11
1
A
VAL
154
69.40
69.65
1
A
GLN
156
35.90
100.33
27.728
0.05
-0.00
-0.00
0.05
0.00
-0.10
0.955
0.938
HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT
0.23943
0.18093
0.18367
1.80
6.00
432
8591
4.8
94.93
3.445
0.109
RANDOM
1
THROUGHOUT
0.168
0.157
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
1.80
6.00
66
1024
15
0
943
0.017
0.020
1033
1.889
1.982
1398
7.972
5.000
120
33.584
23.600
50
16.408
15.000
174
21.157
15.000
7
0.121
0.200
140
0.011
0.021
805
0.379
0.229
1.842
35
485
20
98.86
1.80
50.00
4P9Z
9395
0.087
1
19.0
7.1
98.3
0.331
1.80
1.86
8.8
1
7.4
100.0
refinement
REFMAC
5.6.0117
Grb2 SH2 complexed with a pTyr-Ac6c-Asn tripeptide
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
5
N
N
6
N
N
6
N
N
A
PRO
66
A
PRO
14
HELX_P
A
LYS
76
A
LYS
24
1
AA1
11
A
SER
127
A
SER
75
HELX_P
A
HIS
135
A
HIS
83
1
AA2
9
covale
1.587
both
B
NMI
1
B
CAC
NMI
1
1_555
B
PTR
2
B
N
PTR
2
1_555
covale
1.488
both
B
PTR
2
B
C
PTR
2
1_555
B
02K
3
B
N
02K
3
1_555
covale
1.541
both
B
02K
3
B
C
02K
3
1_555
B
ASN
4
B
N
ASN
4
1_555
covale
1.342
both
B
ASN
4
B
C
ASN
4
1_555
B
NH2
5
B
N
NH2
5
1_555
Signaling Protein/Antagonist
Grb2 SH2, Cation-Pi Interaction, Signaling Protein-Antagonist complex
GRB2_HUMAN
UNP
1
53
P62993
IEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELV
DYHRSTSVSRNQQIFLRDIEQVPQQPTYVQA
4P9Z
PDB
2
4P9Z
53
163
4P9Z
53
163
P62993
A
1
1
111
1
5
4P9Z
1
5
4P9Z
B
2
1
5
4
3
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ASP
104
A
ASP
52
A
LYS
109
A
LYS
57
A
PHE
95
A
PHE
43
A
PHE
101
A
PHE
49
A
ALA
82
A
ALA
30
A
GLU
87
A
GLU
35
A
ARG
149
A
ARG
97
A
ASP
150
A
ASP
98
A
LEU
111
A
LEU
59
A
ARG
112
A
ARG
60
A
TYR
118
A
TYR
66
A
PHE
119
A
PHE
67
A
LYS
124
A
LYS
72
A
PHE
125
A
PHE
73
binding site for residue GOL A 201
A
GOL
201
Software
7
binding site for residue ACT A 202
A
ACT
202
Software
6
binding site for residue ACT A 203
A
ACT
203
Software
5
binding site for residue CL A 204
A
CL
204
Software
2
binding site for NMI-PTR-02K-ASN-NH2
B
NMI
1
Software
23
A
PHE
125
A
PHE
73
7
1_555
A
ASN
126
A
ASN
74
7
1_555
A
GLU
130
A
GLU
78
7
1_555
A
ASN
143
A
ASN
91
7
6_545
A
GLN
157
A
GLN
105
7
4_645
A
THR
159
A
THR
107
7
4_645
A
HOH
321
G
HOH
7
6_545
A
VAL
123
A
VAL
71
6
1_555
A
TYR
134
A
TYR
82
6
1_555
A
HIS
135
A
HIS
83
6
1_555
A
THR
138
A
THR
86
6
1_555
A
HOH
318
G
HOH
6
1_555
A
HOH
361
G
HOH
6
1_555
A
LYS
76
A
LYS
24
5
7_655
A
ARG
78
A
ARG
26
5
7_655
A
ASP
94
A
ASP
42
5
1_555
A
LEU
111
A
LEU
59
5
1_555
A
ARG
112
A
ARG
60
5
1_555
A
SER
139
A
SER
87
2
1_555
A
GLN
145
A
GLN
93
2
1_555
A
ARG
67
A
ARG
15
23
1_555
A
ARG
78
A
ARG
26
23
7_655
A
ARG
86
A
ARG
34
23
1_555
A
SER
88
A
SER
36
23
1_555
A
SER
90
A
SER
38
23
1_555
A
SER
96
A
SER
44
23
1_555
A
GLN
106
A
GLN
54
23
1_555
A
HIS
107
A
HIS
55
23
1_555
A
PHE
108
A
PHE
56
23
1_555
A
LYS
109
A
LYS
57
23
1_555
A
LEU
120
A
LEU
68
23
1_555
A
TRP
121
A
TRP
69
23
1_555
A
GLU
152
A
GLU
100
23
7_655
A
VAL
154
A
VAL
102
23
7_655
A
PRO
158
A
PRO
106
23
1_565
A
THR
159
A
THR
107
23
1_565
A
TYR
160
A
TYR
108
23
1_565
A
HOH
322
G
HOH
23
1_555
A
HOH
354
G
HOH
23
1_555
B
HOH
101
H
HOH
23
1_555
B
HOH
102
H
HOH
23
1_555
B
HOH
103
H
HOH
23
1_555
B
HOH
104
H
HOH
23
1_555
96
P 43 21 2