0.008351
0.004821
0.000000
0.000000
0.009643
0.000000
0.000000
0.000000
0.011956
0.000000
0.000000
0.000000
Johnson, Z.L.
Lee, S.-Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
119.749
119.749
83.638
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C22 H42 O11
482.562
DECYL-BETA-D-MALTOPYRANOSIDE
DECYLMALTOSIDE
D-saccharide
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C8 H12 N4 O5
244.205
1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide
Ribavirin
non-polymer
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
R
C
N
89
R
C
N
90
S
C
N
91
R
C
N
92
N
O
N
93
R
C
N
94
N
O
N
95
N
O
N
96
N
C
N
97
N
C
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
C
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
C
N
109
N
O
N
110
R
C
N
111
S
C
N
112
S
C
N
113
R
C
N
114
N
O
N
115
R
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
C
N
120
N
O
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
N
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
O
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
N
N
216
S
C
N
217
N
C
N
218
N
O
N
219
S
C
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
O
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
O
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
N
N
268
N
O
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
S
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
NA
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
Y
345
N
N
Y
346
N
N
Y
347
N
C
N
348
N
N
N
349
N
O
Y
350
N
N
Y
351
N
C
N
352
N
C
N
353
R
C
N
354
R
C
N
355
N
O
N
356
S
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
N
379
N
O
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
N
N
389
S
C
N
390
N
C
N
391
N
O
N
392
R
C
N
393
N
O
N
394
N
C
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
N
N
406
S
C
N
407
N
C
N
408
N
O
N
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
N
Y
414
N
C
Y
415
N
C
Y
416
N
C
Y
417
N
C
Y
418
N
C
N
419
N
O
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
N
N
433
S
C
N
434
N
C
N
435
N
O
N
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
N
443
N
O
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
N
N
457
S
C
N
458
N
C
N
459
N
O
N
460
N
C
N
461
N
C
N
462
N
C
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
doub
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
doub
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
Y
303
N
doub
Y
304
N
sing
Y
305
N
sing
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
sing
Y
333
N
sing
N
334
N
sing
Y
335
N
doub
Y
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
Y
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
doub
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
Y
402
N
doub
Y
403
N
sing
Y
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
sing
Y
411
N
doub
N
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
doub
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
Y
430
N
doub
Y
431
N
sing
Y
432
N
sing
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
doub
N
437
N
sing
Y
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
US
Elife
2050-084X
3
e03604
e03604
10.7554/eLife.03604
25082345
Structural basis of nucleoside and nucleoside drug selectivity by concentrative nucleoside transporters.
2014
10.2210/pdb4pb1/pdb
pdb_00004pb1
100
1
CCD
2011-08-22
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
24-ID-C
APS
0.97918
SYNCHROTRON
APS BEAMLINE 24-ID-C
44151.848
NupC family protein
L7C, I8C
1
man
polymer
244.205
1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
482.562
DECYL-BETA-D-MALTOPYRANOSIDE
1
man
non-polymer
18.015
water
2
nat
water
no
no
GPAVPRMSLFMSCCGMAVLLGIAVLLSSNRKAINLRTVGGAFAIQFSLGAFILYVPWGQELLRGFSDAVSNVINYGNDGT
SFLFGGLVSGKMFEVFGGGGFIFAFRVLPTLIFFSALISVLYYLGVMQWVIRILGGGLQKALGTSRAESMSAAANIFVGQ
TEAPLVVRPFVPKMTQSELFAVMCGGLASIAGGVLAGYASMGVKIEYLVAASFMAAPGGLLFAKLMMPETEKPQDNEDIT
LDGGDDKPANVIDAAAGGASAGLQLALNVGAMLIAFIGLIALINGMLGGIGGWFGMPELKLEMLLGWLFAPLAFLIGVPW
NEATVAGEFIGLKTVANEFVAYSQFAPYLTEAAPVVLSEKTKAIISFALCGFANLSSIAILLGGLGSLAPKRRGDIARMG
VKAVIAGTLSNLMAATIAGFFLSF
GPAVPRMSLFMSCCGMAVLLGIAVLLSSNRKAINLRTVGGAFAIQFSLGAFILYVPWGQELLRGFSDAVSNVINYGNDGT
SFLFGGLVSGKMFEVFGGGGFIFAFRVLPTLIFFSALISVLYYLGVMQWVIRILGGGLQKALGTSRAESMSAAANIFVGQ
TEAPLVVRPFVPKMTQSELFAVMCGGLASIAGGVLAGYASMGVKIEYLVAASFMAAPGGLLFAKLMMPETEKPQDNEDIT
LDGGDDKPANVIDAAAGGASAGLQLALNVGAMLIAFIGLIALINGMLGGIGGWFGMPELKLEMLLGWLFAPLAFLIGVPW
NEATVAGEFIGLKTVANEFVAYSQFAPYLTEAAPVVLSEKTKAIISFALCGFANLSSIAILLGGLGSLAPKRRGDIARMG
VKAVIAGTLSNLMAATIAGFFLSF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 39315 / El Tor Inaba N16961
sample
1
424
VC_2352
243277
Vibrio cholerae serotype O1
562
Escherichia coli
C41 (DE3)
plasmid
Biological sequence
pET26
1
4.12
70.14
LIQUID DIFFUSION
7.5
37-42% PEG 400, 100 mM CaCl2
290
entity
entity_src_gen
pdbx_audit_support
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
software
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
refine_hist
repository
Initial release
Database references
Author supporting evidence
Derived calculations
Other
Refinement description
Source and taxonomy
Structure summary
Author supporting evidence
Data collection
Database references
Refinement description
1
0
2014-08-13
1
1
2014-10-01
1
2
2017-09-20
1
3
2019-12-25
1
4
2023-09-27
_entity.pdbx_description
_entity.src_method
_entity_src_gen.pdbx_alt_source_flag
_pdbx_audit_support.funding_organization
_pdbx_database_status.pdb_format_compatible
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_oper_list.symmetry_operation
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_refine_hist.pdbx_number_atoms_nucleic_acid
_refine_hist.pdbx_number_atoms_protein
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
R01-GM100984
3TIJ contains wildtype vcCNT bound to uridine
N
RCSB
Y
RCSB
2014-04-11
REL
REL
RBV
1-(beta-D-ribofuranosyl)-1H-1,2,4-triazole-3-carboxamide
NA
SODIUM ION
DMU
DECYL-BETA-D-MALTOPYRANOSIDE
HOH
water
3TIJ
PDB
experimental model
RVN
1
2
RBV
RBV
501
A
NA
1
3
NA
NA
502
A
DMU
503
4
DMU
DMU
503
A
HOH
1
5
HOH
HOH
601
A
HOH
2
5
HOH
HOH
602
A
n
1
-5
A
n
2
-4
A
n
3
-3
A
n
4
-2
A
n
5
-1
A
n
6
0
A
n
7
1
A
SER
2
n
8
SER
2
A
LEU
3
n
9
LEU
3
A
PHE
4
n
10
PHE
4
A
MET
5
n
11
MET
5
A
SER
6
n
12
SER
6
A
CYS
7
n
13
CYS
7
A
CYS
8
n
14
CYS
8
A
GLY
9
n
15
GLY
9
A
MET
10
n
16
MET
10
A
ALA
11
n
17
ALA
11
A
VAL
12
n
18
VAL
12
A
LEU
13
n
19
LEU
13
A
LEU
14
n
20
LEU
14
A
GLY
15
n
21
GLY
15
A
ILE
16
n
22
ILE
16
A
ALA
17
n
23
ALA
17
A
VAL
18
n
24
VAL
18
A
LEU
19
n
25
LEU
19
A
LEU
20
n
26
LEU
20
A
SER
21
n
27
SER
21
A
SER
22
n
28
SER
22
A
ASN
23
n
29
ASN
23
A
ARG
24
n
30
ARG
24
A
LYS
25
n
31
LYS
25
A
ALA
26
n
32
ALA
26
A
ILE
27
n
33
ILE
27
A
ASN
28
n
34
ASN
28
A
LEU
29
n
35
LEU
29
A
ARG
30
n
36
ARG
30
A
THR
31
n
37
THR
31
A
VAL
32
n
38
VAL
32
A
GLY
33
n
39
GLY
33
A
GLY
34
n
40
GLY
34
A
ALA
35
n
41
ALA
35
A
PHE
36
n
42
PHE
36
A
ALA
37
n
43
ALA
37
A
ILE
38
n
44
ILE
38
A
GLN
39
n
45
GLN
39
A
PHE
40
n
46
PHE
40
A
SER
41
n
47
SER
41
A
LEU
42
n
48
LEU
42
A
GLY
43
n
49
GLY
43
A
ALA
44
n
50
ALA
44
A
PHE
45
n
51
PHE
45
A
ILE
46
n
52
ILE
46
A
LEU
47
n
53
LEU
47
A
TYR
48
n
54
TYR
48
A
VAL
49
n
55
VAL
49
A
PRO
50
n
56
PRO
50
A
TRP
51
n
57
TRP
51
A
GLY
52
n
58
GLY
52
A
GLN
53
n
59
GLN
53
A
GLU
54
n
60
GLU
54
A
LEU
55
n
61
LEU
55
A
LEU
56
n
62
LEU
56
A
ARG
57
n
63
ARG
57
A
GLY
58
n
64
GLY
58
A
PHE
59
n
65
PHE
59
A
SER
60
n
66
SER
60
A
ASP
61
n
67
ASP
61
A
ALA
62
n
68
ALA
62
A
VAL
63
n
69
VAL
63
A
SER
64
n
70
SER
64
A
ASN
65
n
71
ASN
65
A
VAL
66
n
72
VAL
66
A
ILE
67
n
73
ILE
67
A
ASN
68
n
74
ASN
68
A
TYR
69
n
75
TYR
69
A
GLY
70
n
76
GLY
70
A
ASN
71
n
77
ASN
71
A
ASP
72
n
78
ASP
72
A
GLY
73
n
79
GLY
73
A
THR
74
n
80
THR
74
A
SER
75
n
81
SER
75
A
PHE
76
n
82
PHE
76
A
LEU
77
n
83
LEU
77
A
PHE
78
n
84
PHE
78
A
GLY
79
n
85
GLY
79
A
GLY
80
n
86
GLY
80
A
LEU
81
n
87
LEU
81
A
VAL
82
n
88
VAL
82
A
SER
83
n
89
SER
83
A
GLY
84
n
90
GLY
84
A
LYS
85
n
91
LYS
85
A
MET
86
n
92
MET
86
A
PHE
87
n
93
PHE
87
A
GLU
88
n
94
GLU
88
A
VAL
89
n
95
VAL
89
A
PHE
90
n
96
PHE
90
A
GLY
91
n
97
GLY
91
A
GLY
92
n
98
GLY
92
A
GLY
93
n
99
GLY
93
A
GLY
94
n
100
GLY
94
A
PHE
95
n
101
PHE
95
A
ILE
96
n
102
ILE
96
A
PHE
97
n
103
PHE
97
A
ALA
98
n
104
ALA
98
A
PHE
99
n
105
PHE
99
A
ARG
100
n
106
ARG
100
A
VAL
101
n
107
VAL
101
A
LEU
102
n
108
LEU
102
A
PRO
103
n
109
PRO
103
A
THR
104
n
110
THR
104
A
LEU
105
n
111
LEU
105
A
ILE
106
n
112
ILE
106
A
PHE
107
n
113
PHE
107
A
PHE
108
n
114
PHE
108
A
SER
109
n
115
SER
109
A
ALA
110
n
116
ALA
110
A
LEU
111
n
117
LEU
111
A
ILE
112
n
118
ILE
112
A
SER
113
n
119
SER
113
A
VAL
114
n
120
VAL
114
A
LEU
115
n
121
LEU
115
A
TYR
116
n
122
TYR
116
A
TYR
117
n
123
TYR
117
A
LEU
118
n
124
LEU
118
A
GLY
119
n
125
GLY
119
A
VAL
120
n
126
VAL
120
A
MET
121
n
127
MET
121
A
GLN
122
n
128
GLN
122
A
TRP
123
n
129
TRP
123
A
VAL
124
n
130
VAL
124
A
ILE
125
n
131
ILE
125
A
ARG
126
n
132
ARG
126
A
ILE
127
n
133
ILE
127
A
LEU
128
n
134
LEU
128
A
GLY
129
n
135
GLY
129
A
GLY
130
n
136
GLY
130
A
GLY
131
n
137
GLY
131
A
LEU
132
n
138
LEU
132
A
GLN
133
n
139
GLN
133
A
LYS
134
n
140
LYS
134
A
ALA
135
n
141
ALA
135
A
LEU
136
n
142
LEU
136
A
GLY
137
n
143
GLY
137
A
THR
138
n
144
THR
138
A
SER
139
n
145
SER
139
A
ARG
140
n
146
ARG
140
A
ALA
141
n
147
ALA
141
A
GLU
142
n
148
GLU
142
A
SER
143
n
149
SER
143
A
MET
144
n
150
MET
144
A
SER
145
n
151
SER
145
A
ALA
146
n
152
ALA
146
A
ALA
147
n
153
ALA
147
A
ALA
148
n
154
ALA
148
A
ASN
149
n
155
ASN
149
A
ILE
150
n
156
ILE
150
A
PHE
151
n
157
PHE
151
A
VAL
152
n
158
VAL
152
A
GLY
153
n
159
GLY
153
A
GLN
154
n
160
GLN
154
A
THR
155
n
161
THR
155
A
GLU
156
n
162
GLU
156
A
ALA
157
n
163
ALA
157
A
PRO
158
n
164
PRO
158
A
LEU
159
n
165
LEU
159
A
VAL
160
n
166
VAL
160
A
VAL
161
n
167
VAL
161
A
ARG
162
n
168
ARG
162
A
PRO
163
n
169
PRO
163
A
PHE
164
n
170
PHE
164
A
VAL
165
n
171
VAL
165
A
PRO
166
n
172
PRO
166
A
LYS
167
n
173
LYS
167
A
MET
168
n
174
MET
168
A
THR
169
n
175
THR
169
A
GLN
170
n
176
GLN
170
A
SER
171
n
177
SER
171
A
GLU
172
n
178
GLU
172
A
LEU
173
n
179
LEU
173
A
PHE
174
n
180
PHE
174
A
ALA
175
n
181
ALA
175
A
VAL
176
n
182
VAL
176
A
MET
177
n
183
MET
177
A
CYS
178
n
184
CYS
178
A
GLY
179
n
185
GLY
179
A
GLY
180
n
186
GLY
180
A
LEU
181
n
187
LEU
181
A
ALA
182
n
188
ALA
182
A
SER
183
n
189
SER
183
A
ILE
184
n
190
ILE
184
A
ALA
185
n
191
ALA
185
A
GLY
186
n
192
GLY
186
A
GLY
187
n
193
GLY
187
A
VAL
188
n
194
VAL
188
A
LEU
189
n
195
LEU
189
A
ALA
190
n
196
ALA
190
A
GLY
191
n
197
GLY
191
A
TYR
192
n
198
TYR
192
A
ALA
193
n
199
ALA
193
A
SER
194
n
200
SER
194
A
MET
195
n
201
MET
195
A
GLY
196
n
202
GLY
196
A
VAL
197
n
203
VAL
197
A
LYS
198
n
204
LYS
198
A
ILE
199
n
205
ILE
199
A
GLU
200
n
206
GLU
200
A
TYR
201
n
207
TYR
201
A
LEU
202
n
208
LEU
202
A
VAL
203
n
209
VAL
203
A
ALA
204
n
210
ALA
204
A
ALA
205
n
211
ALA
205
A
SER
206
n
212
SER
206
A
PHE
207
n
213
PHE
207
A
MET
208
n
214
MET
208
A
ALA
209
n
215
ALA
209
A
ALA
210
n
216
ALA
210
A
PRO
211
n
217
PRO
211
A
GLY
212
n
218
GLY
212
A
GLY
213
n
219
GLY
213
A
LEU
214
n
220
LEU
214
A
LEU
215
n
221
LEU
215
A
PHE
216
n
222
PHE
216
A
ALA
217
n
223
ALA
217
A
LYS
218
n
224
LYS
218
A
LEU
219
n
225
LEU
219
A
MET
220
n
226
MET
220
A
MET
221
n
227
MET
221
A
PRO
222
n
228
PRO
222
A
GLU
223
n
229
GLU
223
A
THR
224
n
230
THR
224
A
GLU
225
n
231
GLU
225
A
LYS
226
n
232
LYS
226
A
PRO
227
n
233
PRO
227
A
GLN
228
n
234
GLN
228
A
ALA
229
n
235
ASP
229
A
n
236
230
A
n
237
231
A
n
238
232
A
n
239
233
A
n
240
234
A
n
241
235
A
n
242
236
A
n
243
237
A
n
244
238
A
n
245
239
A
n
246
240
A
LYS
241
n
247
LYS
241
A
PRO
242
n
248
PRO
242
A
ALA
243
n
249
ALA
243
A
ASN
244
n
250
ASN
244
A
VAL
245
n
251
VAL
245
A
ILE
246
n
252
ILE
246
A
ASP
247
n
253
ASP
247
A
ALA
248
n
254
ALA
248
A
ALA
249
n
255
ALA
249
A
ALA
250
n
256
ALA
250
A
GLY
251
n
257
GLY
251
A
GLY
252
n
258
GLY
252
A
ALA
253
n
259
ALA
253
A
SER
254
n
260
SER
254
A
ALA
255
n
261
ALA
255
A
GLY
256
n
262
GLY
256
A
LEU
257
n
263
LEU
257
A
GLN
258
n
264
GLN
258
A
LEU
259
n
265
LEU
259
A
ALA
260
n
266
ALA
260
A
LEU
261
n
267
LEU
261
A
ASN
262
n
268
ASN
262
A
VAL
263
n
269
VAL
263
A
GLY
264
n
270
GLY
264
A
ALA
265
n
271
ALA
265
A
MET
266
n
272
MET
266
A
LEU
267
n
273
LEU
267
A
ILE
268
n
274
ILE
268
A
ALA
269
n
275
ALA
269
A
PHE
270
n
276
PHE
270
A
ILE
271
n
277
ILE
271
A
GLY
272
n
278
GLY
272
A
LEU
273
n
279
LEU
273
A
ILE
274
n
280
ILE
274
A
ALA
275
n
281
ALA
275
A
LEU
276
n
282
LEU
276
A
ILE
277
n
283
ILE
277
A
ASN
278
n
284
ASN
278
A
GLY
279
n
285
GLY
279
A
MET
280
n
286
MET
280
A
LEU
281
n
287
LEU
281
A
GLY
282
n
288
GLY
282
A
GLY
283
n
289
GLY
283
A
ILE
284
n
290
ILE
284
A
GLY
285
n
291
GLY
285
A
GLY
286
n
292
GLY
286
A
TRP
287
n
293
TRP
287
A
PHE
288
n
294
PHE
288
A
GLY
289
n
295
GLY
289
A
MET
290
n
296
MET
290
A
PRO
291
n
297
PRO
291
A
GLU
292
n
298
GLU
292
A
LEU
293
n
299
LEU
293
A
LYS
294
n
300
LYS
294
A
LEU
295
n
301
LEU
295
A
GLU
296
n
302
GLU
296
A
MET
297
n
303
MET
297
A
LEU
298
n
304
LEU
298
A
LEU
299
n
305
LEU
299
A
GLY
300
n
306
GLY
300
A
TRP
301
n
307
TRP
301
A
LEU
302
n
308
LEU
302
A
PHE
303
n
309
PHE
303
A
ALA
304
n
310
ALA
304
A
PRO
305
n
311
PRO
305
A
LEU
306
n
312
LEU
306
A
ALA
307
n
313
ALA
307
A
PHE
308
n
314
PHE
308
A
LEU
309
n
315
LEU
309
A
ILE
310
n
316
ILE
310
A
GLY
311
n
317
GLY
311
A
VAL
312
n
318
VAL
312
A
PRO
313
n
319
PRO
313
A
TRP
314
n
320
TRP
314
A
ASN
315
n
321
ASN
315
A
GLU
316
n
322
GLU
316
A
ALA
317
n
323
ALA
317
A
THR
318
n
324
THR
318
A
VAL
319
n
325
VAL
319
A
ALA
320
n
326
ALA
320
A
GLY
321
n
327
GLY
321
A
GLU
322
n
328
GLU
322
A
PHE
323
n
329
PHE
323
A
ILE
324
n
330
ILE
324
A
GLY
325
n
331
GLY
325
A
LEU
326
n
332
LEU
326
A
LYS
327
n
333
LYS
327
A
THR
328
n
334
THR
328
A
VAL
329
n
335
VAL
329
A
ALA
330
n
336
ALA
330
A
ASN
331
n
337
ASN
331
A
GLU
332
n
338
GLU
332
A
PHE
333
n
339
PHE
333
A
VAL
334
n
340
VAL
334
A
ALA
335
n
341
ALA
335
A
TYR
336
n
342
TYR
336
A
SER
337
n
343
SER
337
A
GLN
338
n
344
GLN
338
A
PHE
339
n
345
PHE
339
A
ALA
340
n
346
ALA
340
A
PRO
341
n
347
PRO
341
A
TYR
342
n
348
TYR
342
A
LEU
343
n
349
LEU
343
A
THR
344
n
350
THR
344
A
GLU
345
n
351
GLU
345
A
ALA
346
n
352
ALA
346
A
ALA
347
n
353
ALA
347
A
PRO
348
n
354
PRO
348
A
VAL
349
n
355
VAL
349
A
VAL
350
n
356
VAL
350
A
LEU
351
n
357
LEU
351
A
SER
352
n
358
SER
352
A
GLU
353
n
359
GLU
353
A
LYS
354
n
360
LYS
354
A
THR
355
n
361
THR
355
A
LYS
356
n
362
LYS
356
A
ALA
357
n
363
ALA
357
A
ILE
358
n
364
ILE
358
A
ILE
359
n
365
ILE
359
A
SER
360
n
366
SER
360
A
PHE
361
n
367
PHE
361
A
ALA
362
n
368
ALA
362
A
LEU
363
n
369
LEU
363
A
CYS
364
n
370
CYS
364
A
GLY
365
n
371
GLY
365
A
PHE
366
n
372
PHE
366
A
ALA
367
n
373
ALA
367
A
ASN
368
n
374
ASN
368
A
LEU
369
n
375
LEU
369
A
SER
370
n
376
SER
370
A
SER
371
n
377
SER
371
A
ILE
372
n
378
ILE
372
A
ALA
373
n
379
ALA
373
A
ILE
374
n
380
ILE
374
A
LEU
375
n
381
LEU
375
A
LEU
376
n
382
LEU
376
A
GLY
377
n
383
GLY
377
A
GLY
378
n
384
GLY
378
A
LEU
379
n
385
LEU
379
A
GLY
380
n
386
GLY
380
A
SER
381
n
387
SER
381
A
LEU
382
n
388
LEU
382
A
ALA
383
n
389
ALA
383
A
PRO
384
n
390
PRO
384
A
LYS
385
n
391
LYS
385
A
ARG
386
n
392
ARG
386
A
ARG
387
n
393
ARG
387
A
GLY
388
n
394
GLY
388
A
ASP
389
n
395
ASP
389
A
ILE
390
n
396
ILE
390
A
ALA
391
n
397
ALA
391
A
ARG
392
n
398
ARG
392
A
MET
393
n
399
MET
393
A
GLY
394
n
400
GLY
394
A
VAL
395
n
401
VAL
395
A
LYS
396
n
402
LYS
396
A
ALA
397
n
403
ALA
397
A
VAL
398
n
404
VAL
398
A
ILE
399
n
405
ILE
399
A
ALA
400
n
406
ALA
400
A
GLY
401
n
407
GLY
401
A
THR
402
n
408
THR
402
A
LEU
403
n
409
LEU
403
A
SER
404
n
410
SER
404
A
ASN
405
n
411
ASN
405
A
LEU
406
n
412
LEU
406
A
MET
407
n
413
MET
407
A
ALA
408
n
414
ALA
408
A
ALA
409
n
415
ALA
409
A
THR
410
n
416
THR
410
A
ILE
411
n
417
ILE
411
A
ALA
412
n
418
ALA
412
A
GLY
413
n
419
GLY
413
A
PHE
414
n
420
PHE
414
A
PHE
415
n
421
PHE
415
A
LEU
416
n
422
LEU
416
A
n
423
417
A
n
424
418
A
author_and_software_defined_assembly
PISA
3
trimeric
10370
-151
45150
A
ASN
149
A
O
ASN
155
1_555
A
NA
502
C
NA
NA
1_555
A
ASN
149
A
OD1
ASN
155
1_555
104.7
A
ASN
149
A
O
ASN
155
1_555
A
NA
502
C
NA
NA
1_555
A
VAL
152
A
O
VAL
158
1_555
81.4
A
ASN
149
A
OD1
ASN
155
1_555
A
NA
502
C
NA
NA
1_555
A
VAL
152
A
O
VAL
158
1_555
92.9
A
ASN
149
A
O
ASN
155
1_555
A
NA
502
C
NA
NA
1_555
A
SER
183
A
OG
SER
189
1_555
84.3
A
ASN
149
A
OD1
ASN
155
1_555
A
NA
502
C
NA
NA
1_555
A
SER
183
A
OG
SER
189
1_555
84.1
A
VAL
152
A
O
VAL
158
1_555
A
NA
502
C
NA
NA
1_555
A
SER
183
A
OG
SER
189
1_555
164.2
A
ASN
149
A
O
ASN
155
1_555
A
NA
502
C
NA
NA
1_555
A
ILE
184
A
O
ILE
190
1_555
92.6
A
ASN
149
A
OD1
ASN
155
1_555
A
NA
502
C
NA
NA
1_555
A
ILE
184
A
O
ILE
190
1_555
158.3
A
VAL
152
A
O
VAL
158
1_555
A
NA
502
C
NA
NA
1_555
A
ILE
184
A
O
ILE
190
1_555
76.5
A
SER
183
A
OG
SER
189
1_555
A
NA
502
C
NA
NA
1_555
A
ILE
184
A
O
ILE
190
1_555
111.0
A
ASN
149
A
O
ASN
155
1_555
A
NA
502
C
NA
NA
1_555
A
HOH
601
E
O
HOH
1_555
161.2
A
ASN
149
A
OD1
ASN
155
1_555
A
NA
502
C
NA
NA
1_555
A
HOH
601
E
O
HOH
1_555
93.7
A
VAL
152
A
O
VAL
158
1_555
A
NA
502
C
NA
NA
1_555
A
HOH
601
E
O
HOH
1_555
102.1
A
SER
183
A
OG
SER
189
1_555
A
NA
502
C
NA
NA
1_555
A
HOH
601
E
O
HOH
1_555
93.6
A
ILE
184
A
O
ILE
190
1_555
A
NA
502
C
NA
NA
1_555
A
HOH
601
E
O
HOH
1_555
70.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_545
-y,x-y-1,z
crystal symmetry operation
59.8745000000
-103.7056760778
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_655
-x+y+1,-x,z
crystal symmetry operation
119.7490000000
0.0000000000
0.0000000000
1
A
CD
LYS
226
A
CD
LYS
232
1
Y
1
A
CE
LYS
226
A
CE
LYS
232
1
Y
1
A
NZ
LYS
226
A
NZ
LYS
232
1
Y
1
A
CG
ASP
229
A
CG
ASP
235
1
Y
1
A
OD1
ASP
229
A
OD1
ASP
235
1
Y
1
A
OD2
ASP
229
A
OD2
ASP
235
1
Y
1
A
CG
GLU
345
A
CG
GLU
351
1
Y
1
A
CD
GLU
345
A
CD
GLU
351
1
Y
1
A
OE1
GLU
345
A
OE1
GLU
351
1
Y
1
A
OE2
GLU
345
A
OE2
GLU
351
1
Y
1
A
GLY
-5
A
GLY
1
1
Y
1
A
PRO
-4
A
PRO
2
1
Y
1
A
ALA
-3
A
ALA
3
1
Y
1
A
VAL
-2
A
VAL
4
1
Y
1
A
PRO
-1
A
PRO
5
1
Y
1
A
ARG
0
A
ARG
6
1
Y
1
A
MET
1
A
MET
7
1
Y
1
A
ASN
230
A
ASN
236
1
Y
1
A
GLU
231
A
GLU
237
1
Y
1
A
ASP
232
A
ASP
238
1
Y
1
A
ILE
233
A
ILE
239
1
Y
1
A
THR
234
A
THR
240
1
Y
1
A
LEU
235
A
LEU
241
1
Y
1
A
ASP
236
A
ASP
242
1
Y
1
A
GLY
237
A
GLY
243
1
Y
1
A
GLY
238
A
GLY
244
1
Y
1
A
ASP
239
A
ASP
245
1
Y
1
A
ASP
240
A
ASP
246
1
Y
1
A
SER
417
A
SER
423
1
Y
1
A
PHE
418
A
PHE
424
1
Y
1
A
ILE
184
-114.44
-143.45
1
A
ALA
330
-127.56
-103.05
1
A
ALA
346
-95.02
34.85
1
A
ALA
367
-64.51
93.29
1
A
ALA
383
-157.46
78.71
174.170
58.8400
25.950
0.2589
0.2221
0.2238
2.8030
39.1970
853
15987
16840
5.0700
99.7900
0.8042
0.3700
1
FREE R-VALUE
1.380
MOLECULAR REPLACEMENT
27.3000
0.9000
1.1100
3TIJ
ML
FLAT BULK SOLVENT MODEL
2.8030
39.1970
2
3000
66.11
48.10
51
0
2947
404
0.003
3066
0.709
4159
0.023
490
0.003
512
11.008
1052
0.2980
0.2570
2.9784
143
2635
2778
6
100.0000
0.2602
0.2392
3.2082
136
2655
2791
6
100.0000
0.2281
0.2091
3.5309
139
2641
2780
6
100.0000
0.2428
0.2019
4.0414
144
2673
2817
6
100.0000
0.2447
0.2136
5.0900
144
2669
2813
6
100.0000
0.2813
0.2338
39.2009
147
2714
2861
6
99.0000
62.170
2.800
50.000
4PB1
16852
0.114
2.588
1
20.172
8.300
117518
7.000
99.800
0.758
2.800
2.850
823
0.564
1
6.300
0
100.000
0.680
2.850
2.900
840
0.592
1
6.500
0
99.900
0.624
2.900
2.960
831
0.605
1
6.600
0
99.800
0.550
2.960
3.020
838
0.650
1
6.600
0
99.900
0.467
3.020
3.080
843
0.659
1
6.600
0
100.000
0.419
3.080
3.150
833
0.692
1
6.700
0
100.000
0.320
3.150
3.230
848
0.765
1
6.900
0
100.000
0.283
3.230
3.320
840
0.801
1
6.900
0
99.900
0.235
3.320
3.420
832
0.870
1
6.900
0
100.000
0.209
3.420
3.530
839
1.195
1
7.000
0
100.000
0.154
3.530
3.650
849
1.066
1
7.100
0
99.900
0.160
3.650
3.800
833
1.724
1
7.200
0
100.000
0.143
3.800
3.970
850
2.289
1
7.200
0
100.000
0.080
3.970
4.180
838
1.195
1
7.300
0
99.800
0.067
4.180
4.440
848
1.324
1
7.400
0
99.900
0.060
4.440
4.790
846
1.626
1
7.400
0
99.900
0.065
4.790
5.270
845
2.365
1
7.300
0
99.800
0.073
5.270
6.030
855
2.320
1
7.300
0
99.800
0.056
6.030
7.590
851
5.130
1
7.100
0
99.600
0.078
7.590
50.000
870
23.147
1
7.200
0
98.500
refinement
PHENIX
data scaling
SCALEPACK
data extraction
PDB_EXTRACT
3.14
Structure of vcCNT-7C8C bound to ribavirin
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
LEU
3
A
LEU
9
HELX_P
A
LEU
20
A
LEU
26
1
AA1
18
A
ASN
23
A
ASN
29
HELX_P
A
ILE
27
A
ILE
33
5
AA2
5
A
ASN
28
A
ASN
34
HELX_P
A
TYR
48
A
TYR
54
1
AA3
21
A
VAL
49
A
VAL
55
HELX_P
A
GLY
79
A
GLY
85
1
AA4
31
A
GLY
80
A
GLY
86
HELX_P
A
SER
83
A
SER
89
5
AA5
4
A
GLY
84
A
GLY
90
HELX_P
A
GLY
91
A
GLY
97
1
AA6
8
A
GLY
92
A
GLY
98
HELX_P
A
PHE
95
A
PHE
101
5
AA7
4
A
ILE
96
A
ILE
102
HELX_P
A
VAL
101
A
VAL
107
1
AA8
6
A
VAL
101
A
VAL
107
HELX_P
A
LEU
118
A
LEU
124
1
AA9
18
A
GLY
119
A
GLY
125
HELX_P
A
GLY
137
A
GLY
143
1
AB1
19
A
SER
139
A
SER
145
HELX_P
A
ASN
149
A
ASN
155
1
AB2
11
A
GLU
156
A
GLU
162
HELX_P
A
ARG
162
A
ARG
168
5
AB3
7
A
THR
169
A
THR
175
HELX_P
A
ALA
182
A
ALA
188
1
AB4
14
A
ALA
185
A
ALA
191
HELX_P
A
SER
194
A
SER
200
1
AB5
10
A
LYS
198
A
LYS
204
HELX_P
A
MET
208
A
MET
214
1
AB6
11
A
MET
208
A
MET
214
HELX_P
A
MET
221
A
MET
227
1
AB7
14
A
ASN
244
A
ASN
250
HELX_P
A
TRP
287
A
TRP
293
1
AB8
44
A
LYS
294
A
LYS
300
HELX_P
A
ILE
310
A
ILE
316
1
AB9
17
A
PRO
313
A
PRO
319
HELX_P
A
ASN
315
A
ASN
321
5
AC1
3
A
GLU
316
A
GLU
322
HELX_P
A
ALA
330
A
ALA
336
1
AC2
15
A
ASN
331
A
ASN
337
HELX_P
A
ALA
340
A
ALA
346
1
AC3
10
A
PRO
341
A
PRO
347
HELX_P
A
THR
344
A
THR
350
5
AC4
4
A
SER
352
A
SER
358
HELX_P
A
CYS
364
A
CYS
370
1
AC5
13
A
LEU
369
A
LEU
375
HELX_P
A
LEU
382
A
LEU
388
1
AC6
14
A
ALA
383
A
ALA
389
HELX_P
A
LYS
385
A
LYS
391
5
AC7
3
A
ARG
386
A
ARG
392
HELX_P
A
PHE
415
A
PHE
421
1
AC8
30
metalc
2.406
A
ASN
149
A
O
ASN
155
1_555
A
NA
502
C
NA
NA
1_555
metalc
2.468
A
ASN
149
A
OD1
ASN
155
1_555
A
NA
502
C
NA
NA
1_555
metalc
2.375
A
VAL
152
A
O
VAL
158
1_555
A
NA
502
C
NA
NA
1_555
metalc
2.441
A
SER
183
A
OG
SER
189
1_555
A
NA
502
C
NA
NA
1_555
metalc
2.378
A
ILE
184
A
O
ILE
190
1_555
A
NA
502
C
NA
NA
1_555
metalc
2.329
A
NA
502
C
NA
NA
1_555
A
HOH
601
E
O
HOH
1_555
TRANSPORT PROTEIN
membrane protein, sodium-coupled transporter, ribavirin, drug transporter, TRANSPORT PROTEIN
Q9KPL5_VIBCH
UNP
1
1
Q9KPL5
MSLFMSLIGMAVLLGIAVLLSSNRKAINLRTVGGAFAIQFSLGAFILYVPWGQELLRGFSDAVSNVINYGNDGTSFLFGG
LVSGKMFEVFGGGGFIFAFRVLPTLIFFSALISVLYYLGVMQWVIRILGGGLQKALGTSRAESMSAAANIFVGQTEAPLV
VRPFVPKMTQSELFAVMCGGLASIAGGVLAGYASMGVKIEYLVAASFMAAPGGLLFAKLMMPETEKPQDNEDITLDGGDD
KPANVIDAAAGGASAGLQLALNVGAMLIAFIGLIALINGMLGGIGGWFGMPELKLEMLLGWLFAPLAFLIGVPWNEATVA
GEFIGLKTVANEFVAYSQFAPYLTEAAPVVLSEKTKAIISFALCGFANLSSIAILLGGLGSLAPKRRGDIARMGVKAVIA
GTLSNLMAATIAGFFLSF
1
418
4PB1
1
418
Q9KPL5
A
1
7
424
1
expression tag
GLY
-5
4PB1
A
Q9KPL5
UNP
1
1
expression tag
PRO
-4
4PB1
A
Q9KPL5
UNP
2
1
expression tag
ALA
-3
4PB1
A
Q9KPL5
UNP
3
1
expression tag
VAL
-2
4PB1
A
Q9KPL5
UNP
4
1
expression tag
PRO
-1
4PB1
A
Q9KPL5
UNP
5
1
expression tag
ARG
0
4PB1
A
Q9KPL5
UNP
6
1
LEU
engineered mutation
CYS
7
4PB1
A
Q9KPL5
UNP
7
13
1
ILE
engineered mutation
CYS
8
4PB1
A
Q9KPL5
UNP
8
14
binding site for residue RBV A 501
A
RBV
501
Software
12
binding site for residue NA A 502
A
NA
502
Software
5
binding site for residue DMU A 503
A
DMU
503
Software
5
A
THR
155
A
THR
161
12
1_555
A
GLU
156
A
GLU
162
12
1_555
A
TYR
192
A
TYR
198
12
1_555
A
LEU
259
A
LEU
265
12
1_555
A
ASN
331
A
ASN
337
12
1_555
A
GLU
332
A
GLU
338
12
1_555
A
PHE
333
A
PHE
339
12
1_555
A
PHE
366
A
PHE
372
12
1_555
A
ASN
368
A
ASN
374
12
1_555
A
SER
371
A
SER
377
12
1_555
A
ILE
374
A
ILE
380
12
1_555
A
HOH
602
E
HOH
12
1_555
A
ASN
149
A
ASN
155
5
1_555
A
VAL
152
A
VAL
158
5
1_555
A
SER
183
A
SER
189
5
1_555
A
ILE
184
A
ILE
190
5
1_555
A
HOH
601
E
HOH
5
1_555
A
ALA
243
A
ALA
249
5
3_655
A
ASN
244
A
ASN
250
5
3_655
A
LEU
369
A
LEU
375
5
1_555
A
ALA
391
A
ALA
397
5
1_555
A
VAL
395
A
VAL
401
5
1_555
173
P 63