0.011372
0.000000
0.000000
0.000000
0.007317
0.000000
0.000000
0.000000
0.022109
0.000000
0.000000
0.000000
2.310
1.020
1.589
0.865
20.844
10.208
0.569
51.651
0.216
0.493
0.323
0.140
0.041
10.511
26.126
3.142
57.800
0.003
12.213
3.132
2.013
1.166
0.006
9.893
28.997
0.583
-11.529
3.049
2.287
1.546
0.867
13.277
5.701
0.324
32.909
0.251
6.905
5.203
1.438
1.586
1.468
22.215
0.254
56.172
1.055
Celie, P.
Joosten, R.P.
Perrakis, A.
Neefjes, J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
87.933
136.665
45.231
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
S
C
N
270
N
O
N
271
N
C
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
O
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
R
C
N
345
N
O
N
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
N
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
N
395
N
O
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
N
413
N
C
N
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
Y
282
N
doub
Y
283
N
sing
Y
284
N
sing
N
285
N
sing
Y
286
N
doub
N
287
N
sing
Y
288
N
doub
N
289
N
sing
Y
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
Y
351
N
doub
Y
352
N
sing
Y
353
N
sing
N
354
N
sing
Y
355
N
doub
Y
356
N
sing
Y
357
N
sing
N
358
N
sing
Y
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
Y
379
N
doub
Y
380
N
sing
Y
381
N
sing
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
doub
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
1091-6490
112
1505
1510
10.1073/pnas.1416543112
25605945
The first step of peptide selection in antigen presentation by MHC class I molecules.
2015
10.2210/pdb4pge/pdb
pdb_00004pge
100
1
CCD
2012-05-24
ADSC QUANTUM 315r
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
ID23-1
ESRF
1.0000
SYNCHROTRON
ESRF BEAMLINE ID23-1
34956.996
H-2 class I histocompatibility antigen, K-B alpha chain
heavy chain, UNP residues 22-299
1
man
polymer
11835.555
Beta-2-microglobulin
UNP residues 21-119
1
man
polymer
1022.112
Sendai virus nucleoprotein
peptide 324-332
L332W
1
syn
polymer
92.094
GLYCEROL
6
syn
non-polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
2
syn
non-polymer
18.015
water
104
nat
water
H-2K(B)
no
no
MGSSHHHHHHSSGLVPRGSHMLEDPMGPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQ
EGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDGCDYIALNEDLKTWT
AADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADIT
LTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWEPPP
MGSSHHHHHHSSGLVPRGSHMLEDPMGPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQ
EGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDGCDYIALNEDLKTWT
AADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADIT
LTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWEPPP
A
polypeptide(L)
no
no
MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA
CRVKHDSMAEPKTVYWDRDM
MIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA
CRVKHDSMAEPKTVYWDRDM
B
polypeptide(L)
no
no
FAPGNYPAW
FAPGNYPAW
C
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mouse
sample
1
304
H2-K1, H2-K
10090
Mus musculus
469008
Escherichia coli
BL21(DE3)pLysS
plasmid
Biological sequence
pET15
Mouse
sample
1
100
B2m
10090
Mus musculus
469008
Escherichia coli
BL21(DE3)pLysS
plasmid
Biological sequence
pET3a
1
2.84
56.72
VAPOR DIFFUSION, SITTING DROP
6.5
sodium/potassium phosphate buffer 1.9M, MPD 1%, glycerol (cryoprotection)
293
citation
entity_src_gen
pdbx_database_status
pdbx_entity_src_syn
pdbx_struct_assembly
pdbx_struct_oper_list
software
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
refine_hist
repository
Initial release
Database references
Database references
Database references
Database references
Derived calculations
Other
Refinement description
Source and taxonomy
Author supporting evidence
Data collection
Database references
Refinement description
1
0
2015-01-07
1
1
2015-01-21
1
2
2015-02-04
1
3
2015-02-11
1
4
2017-11-22
1
5
2020-01-08
1
6
2023-09-27
_citation.journal_id_CSD
_entity_src_gen.pdbx_alt_source_flag
_pdbx_database_status.pdb_format_compatible
_pdbx_entity_src_syn.pdbx_alt_source_flag
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_oper_list.symmetry_operation
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_refine_hist.number_atoms_total
_refine_hist.pdbx_number_atoms_nucleic_acid
_refine_hist.pdbx_number_atoms_protein
Netherlands
Netherlands Organisation for Scientific Research (NWO)
N
RCSB
Y
RCSB
2014-05-01
REL
REL
GOL
GLYCEROL
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
HOH
water
Solid Phase Peptide Synthesis
11191
Sendai virus
sample
1
9
2VAB
PDB
experimental model
GOL
2
4
GOL
GOL
301
A
MPD
4
5
MPD
MPD
302
A
GOL
1
4
GOL
GOL
303
A
GOL
1
4
GOL
GOL
304
A
MPD
3
5
MPD
MPD
101
B
GOL
1
4
GOL
GOL
102
B
GOL
1
4
GOL
GOL
103
B
GOL
1
4
GOL
GOL
101
C
HOH
63
6
HOH
HOH
401
A
HOH
35
6
HOH
HOH
402
A
HOH
60
6
HOH
HOH
403
A
HOH
6
6
HOH
HOH
404
A
HOH
76
6
HOH
HOH
405
A
HOH
54
6
HOH
HOH
406
A
HOH
42
6
HOH
HOH
407
A
HOH
3
6
HOH
HOH
408
A
HOH
104
6
HOH
HOH
409
A
HOH
34
6
HOH
HOH
410
A
HOH
31
6
HOH
HOH
411
A
HOH
28
6
HOH
HOH
412
A
HOH
12
6
HOH
HOH
413
A
HOH
103
6
HOH
HOH
414
A
HOH
32
6
HOH
HOH
415
A
HOH
83
6
HOH
HOH
416
A
HOH
1
6
HOH
HOH
417
A
HOH
2
6
HOH
HOH
418
A
HOH
5
6
HOH
HOH
419
A
HOH
8
6
HOH
HOH
420
A
HOH
9
6
HOH
HOH
421
A
HOH
10
6
HOH
HOH
422
A
HOH
11
6
HOH
HOH
423
A
HOH
13
6
HOH
HOH
424
A
HOH
14
6
HOH
HOH
425
A
HOH
15
6
HOH
HOH
426
A
HOH
16
6
HOH
HOH
427
A
HOH
17
6
HOH
HOH
428
A
HOH
21
6
HOH
HOH
429
A
HOH
22
6
HOH
HOH
430
A
HOH
23
6
HOH
HOH
431
A
HOH
25
6
HOH
HOH
432
A
HOH
26
6
HOH
HOH
433
A
HOH
33
6
HOH
HOH
434
A
HOH
36
6
HOH
HOH
435
A
HOH
39
6
HOH
HOH
436
A
HOH
40
6
HOH
HOH
437
A
HOH
41
6
HOH
HOH
438
A
HOH
43
6
HOH
HOH
439
A
HOH
44
6
HOH
HOH
440
A
HOH
46
6
HOH
HOH
441
A
HOH
49
6
HOH
HOH
442
A
HOH
50
6
HOH
HOH
443
A
HOH
52
6
HOH
HOH
444
A
HOH
53
6
HOH
HOH
445
A
HOH
57
6
HOH
HOH
446
A
HOH
59
6
HOH
HOH
447
A
HOH
61
6
HOH
HOH
448
A
HOH
64
6
HOH
HOH
449
A
HOH
65
6
HOH
HOH
450
A
HOH
66
6
HOH
HOH
451
A
HOH
69
6
HOH
HOH
452
A
HOH
71
6
HOH
HOH
453
A
HOH
72
6
HOH
HOH
454
A
HOH
77
6
HOH
HOH
455
A
HOH
78
6
HOH
HOH
456
A
HOH
80
6
HOH
HOH
457
A
HOH
81
6
HOH
HOH
458
A
HOH
85
6
HOH
HOH
459
A
HOH
86
6
HOH
HOH
460
A
HOH
89
6
HOH
HOH
461
A
HOH
90
6
HOH
HOH
462
A
HOH
91
6
HOH
HOH
463
A
HOH
92
6
HOH
HOH
464
A
HOH
94
6
HOH
HOH
465
A
HOH
98
6
HOH
HOH
466
A
HOH
100
6
HOH
HOH
467
A
HOH
109
6
HOH
HOH
468
A
HOH
110
6
HOH
HOH
469
A
HOH
87
6
HOH
HOH
201
B
HOH
88
6
HOH
HOH
202
B
HOH
48
6
HOH
HOH
203
B
HOH
82
6
HOH
HOH
204
B
HOH
84
6
HOH
HOH
205
B
HOH
18
6
HOH
HOH
206
B
HOH
19
6
HOH
HOH
207
B
HOH
20
6
HOH
HOH
208
B
HOH
27
6
HOH
HOH
209
B
HOH
29
6
HOH
HOH
210
B
HOH
30
6
HOH
HOH
211
B
HOH
38
6
HOH
HOH
212
B
HOH
45
6
HOH
HOH
213
B
HOH
47
6
HOH
HOH
214
B
HOH
51
6
HOH
HOH
215
B
HOH
55
6
HOH
HOH
216
B
HOH
58
6
HOH
HOH
217
B
HOH
67
6
HOH
HOH
218
B
HOH
68
6
HOH
HOH
219
B
HOH
70
6
HOH
HOH
220
B
HOH
73
6
HOH
HOH
221
B
HOH
79
6
HOH
HOH
222
B
HOH
95
6
HOH
HOH
223
B
HOH
96
6
HOH
HOH
224
B
HOH
97
6
HOH
HOH
225
B
HOH
101
6
HOH
HOH
226
B
HOH
102
6
HOH
HOH
227
B
HOH
106
6
HOH
HOH
228
B
HOH
107
6
HOH
HOH
229
B
HOH
108
6
HOH
HOH
230
B
HOH
37
6
HOH
HOH
201
C
HOH
4
6
HOH
HOH
202
C
HOH
7
6
HOH
HOH
203
C
HOH
24
6
HOH
HOH
204
C
HOH
62
6
HOH
HOH
205
C
n
1
-25
A
n
2
-24
A
n
3
-23
A
n
4
-22
A
n
5
-21
A
n
6
-20
A
n
7
-19
A
n
8
-18
A
n
9
-17
A
n
10
-16
A
n
11
-15
A
n
12
-14
A
n
13
-13
A
n
14
-12
A
n
15
-11
A
n
16
-10
A
n
17
-9
A
n
18
-8
A
n
19
-7
A
n
20
-6
A
n
21
-5
A
n
22
-4
A
n
23
-3
A
n
24
-2
A
n
25
-1
A
n
26
0
A
GLY
1
n
27
GLY
1
A
PRO
2
n
28
PRO
2
A
HIS
3
n
29
HIS
3
A
SER
4
n
30
SER
4
A
LEU
5
n
31
LEU
5
A
ARG
6
n
32
ARG
6
A
TYR
7
n
33
TYR
7
A
PHE
8
n
34
PHE
8
A
VAL
9
n
35
VAL
9
A
THR
10
n
36
THR
10
A
ALA
11
n
37
ALA
11
A
VAL
12
n
38
VAL
12
A
SER
13
n
39
SER
13
A
ARG
14
n
40
ARG
14
A
PRO
15
n
41
PRO
15
A
GLY
16
n
42
GLY
16
A
LEU
17
n
43
LEU
17
A
GLY
18
n
44
GLY
18
A
GLU
19
n
45
GLU
19
A
PRO
20
n
46
PRO
20
A
ARG
21
n
47
ARG
21
A
TYR
22
n
48
TYR
22
A
MET
23
n
49
MET
23
A
GLU
24
n
50
GLU
24
A
VAL
25
n
51
VAL
25
A
GLY
26
n
52
GLY
26
A
TYR
27
n
53
TYR
27
A
VAL
28
n
54
VAL
28
A
ASP
29
n
55
ASP
29
A
ASP
30
n
56
ASP
30
A
THR
31
n
57
THR
31
A
GLU
32
n
58
GLU
32
A
PHE
33
n
59
PHE
33
A
VAL
34
n
60
VAL
34
A
ARG
35
n
61
ARG
35
A
PHE
36
n
62
PHE
36
A
ASP
37
n
63
ASP
37
A
SER
38
n
64
SER
38
A
ASP
39
n
65
ASP
39
A
ALA
40
n
66
ALA
40
A
GLU
41
n
67
GLU
41
A
ASN
42
n
68
ASN
42
A
PRO
43
n
69
PRO
43
A
ARG
44
n
70
ARG
44
A
TYR
45
n
71
TYR
45
A
GLU
46
n
72
GLU
46
A
PRO
47
n
73
PRO
47
A
ARG
48
n
74
ARG
48
A
ALA
49
n
75
ALA
49
A
ARG
50
n
76
ARG
50
A
TRP
51
n
77
TRP
51
A
MET
52
n
78
MET
52
A
GLU
53
n
79
GLU
53
A
GLN
54
n
80
GLN
54
A
GLU
55
n
81
GLU
55
A
GLY
56
n
82
GLY
56
A
PRO
57
n
83
PRO
57
A
GLU
58
n
84
GLU
58
A
TYR
59
n
85
TYR
59
A
TRP
60
n
86
TRP
60
A
GLU
61
n
87
GLU
61
A
ARG
62
n
88
ARG
62
A
GLU
63
n
89
GLU
63
A
THR
64
n
90
THR
64
A
GLN
65
n
91
GLN
65
A
LYS
66
n
92
LYS
66
A
ALA
67
n
93
ALA
67
A
LYS
68
n
94
LYS
68
A
GLY
69
n
95
GLY
69
A
ASN
70
n
96
ASN
70
A
GLU
71
n
97
GLU
71
A
GLN
72
n
98
GLN
72
A
SER
73
n
99
SER
73
A
PHE
74
n
100
PHE
74
A
ARG
75
n
101
ARG
75
A
VAL
76
n
102
VAL
76
A
ASP
77
n
103
ASP
77
A
LEU
78
n
104
LEU
78
A
ARG
79
n
105
ARG
79
A
THR
80
n
106
THR
80
A
LEU
81
n
107
LEU
81
A
LEU
82
n
108
LEU
82
A
GLY
83
n
109
GLY
83
A
TYR
84
n
110
TYR
84
A
TYR
85
n
111
TYR
85
A
ASN
86
n
112
ASN
86
A
GLN
87
n
113
GLN
87
A
SER
88
n
114
SER
88
A
LYS
89
n
115
LYS
89
A
GLY
90
n
116
GLY
90
A
GLY
91
n
117
GLY
91
A
SER
92
n
118
SER
92
A
HIS
93
n
119
HIS
93
A
THR
94
n
120
THR
94
A
ILE
95
n
121
ILE
95
A
GLN
96
n
122
GLN
96
A
VAL
97
n
123
VAL
97
A
ILE
98
n
124
ILE
98
A
SER
99
n
125
SER
99
A
GLY
100
n
126
GLY
100
A
CYS
101
n
127
CYS
101
A
GLU
102
n
128
GLU
102
A
VAL
103
n
129
VAL
103
A
GLY
104
n
130
GLY
104
A
SER
105
n
131
SER
105
A
ASP
106
n
132
ASP
106
A
GLY
107
n
133
GLY
107
A
ARG
108
n
134
ARG
108
A
LEU
109
n
135
LEU
109
A
LEU
110
n
136
LEU
110
A
ARG
111
n
137
ARG
111
A
GLY
112
n
138
GLY
112
A
TYR
113
n
139
TYR
113
A
GLN
114
n
140
GLN
114
A
GLN
115
n
141
GLN
115
A
TYR
116
n
142
TYR
116
A
ALA
117
n
143
ALA
117
A
TYR
118
n
144
TYR
118
A
ASP
119
n
145
ASP
119
A
GLY
120
n
146
GLY
120
A
CYS
121
n
147
CYS
121
A
ASP
122
n
148
ASP
122
A
TYR
123
n
149
TYR
123
A
ILE
124
n
150
ILE
124
A
ALA
125
n
151
ALA
125
A
LEU
126
n
152
LEU
126
A
ASN
127
n
153
ASN
127
A
GLU
128
n
154
GLU
128
A
ASP
129
n
155
ASP
129
A
LEU
130
n
156
LEU
130
A
LYS
131
n
157
LYS
131
A
THR
132
n
158
THR
132
A
TRP
133
n
159
TRP
133
A
THR
134
n
160
THR
134
A
ALA
135
n
161
ALA
135
A
ALA
136
n
162
ALA
136
A
ASP
137
n
163
ASP
137
A
MET
138
n
164
MET
138
A
ALA
139
n
165
ALA
139
A
ALA
140
n
166
ALA
140
A
LEU
141
n
167
LEU
141
A
ILE
142
n
168
ILE
142
A
THR
143
n
169
THR
143
A
LYS
144
n
170
LYS
144
A
HIS
145
n
171
HIS
145
A
LYS
146
n
172
LYS
146
A
TRP
147
n
173
TRP
147
A
GLU
148
n
174
GLU
148
A
GLN
149
n
175
GLN
149
A
ALA
150
n
176
ALA
150
A
GLY
151
n
177
GLY
151
A
GLU
152
n
178
GLU
152
A
ALA
153
n
179
ALA
153
A
GLU
154
n
180
GLU
154
A
ARG
155
n
181
ARG
155
A
LEU
156
n
182
LEU
156
A
ARG
157
n
183
ARG
157
A
ALA
158
n
184
ALA
158
A
TYR
159
n
185
TYR
159
A
LEU
160
n
186
LEU
160
A
GLU
161
n
187
GLU
161
A
GLY
162
n
188
GLY
162
A
THR
163
n
189
THR
163
A
CYS
164
n
190
CYS
164
A
VAL
165
n
191
VAL
165
A
GLU
166
n
192
GLU
166
A
TRP
167
n
193
TRP
167
A
LEU
168
n
194
LEU
168
A
ARG
169
n
195
ARG
169
A
ARG
170
n
196
ARG
170
A
TYR
171
n
197
TYR
171
A
LEU
172
n
198
LEU
172
A
LYS
173
n
199
LYS
173
A
ASN
174
n
200
ASN
174
A
GLY
175
n
201
GLY
175
A
ASN
176
n
202
ASN
176
A
ALA
177
n
203
ALA
177
A
THR
178
n
204
THR
178
A
LEU
179
n
205
LEU
179
A
LEU
180
n
206
LEU
180
A
ARG
181
n
207
ARG
181
A
THR
182
n
208
THR
182
A
ASP
183
n
209
ASP
183
A
SER
184
n
210
SER
184
A
PRO
185
n
211
PRO
185
A
LYS
186
n
212
LYS
186
A
ALA
187
n
213
ALA
187
A
HIS
188
n
214
HIS
188
A
VAL
189
n
215
VAL
189
A
THR
190
n
216
THR
190
A
HIS
191
n
217
HIS
191
A
HIS
192
n
218
HIS
192
A
SER
193
n
219
SER
193
A
ARG
194
n
220
ARG
194
A
PRO
195
n
221
PRO
195
A
GLU
196
n
222
GLU
196
A
ASP
197
n
223
ASP
197
A
LYS
198
n
224
LYS
198
A
VAL
199
n
225
VAL
199
A
THR
200
n
226
THR
200
A
LEU
201
n
227
LEU
201
A
ARG
202
n
228
ARG
202
A
CYS
203
n
229
CYS
203
A
TRP
204
n
230
TRP
204
A
ALA
205
n
231
ALA
205
A
LEU
206
n
232
LEU
206
A
GLY
207
n
233
GLY
207
A
PHE
208
n
234
PHE
208
A
TYR
209
n
235
TYR
209
A
PRO
210
n
236
PRO
210
A
ALA
211
n
237
ALA
211
A
ASP
212
n
238
ASP
212
A
ILE
213
n
239
ILE
213
A
THR
214
n
240
THR
214
A
LEU
215
n
241
LEU
215
A
THR
216
n
242
THR
216
A
TRP
217
n
243
TRP
217
A
GLN
218
n
244
GLN
218
A
LEU
219
n
245
LEU
219
A
ASN
220
n
246
ASN
220
A
GLY
221
n
247
GLY
221
A
GLU
222
n
248
GLU
222
A
GLU
223
n
249
GLU
223
A
LEU
224
n
250
LEU
224
A
ILE
225
n
251
ILE
225
A
GLN
226
n
252
GLN
226
A
ASP
227
n
253
ASP
227
A
MET
228
n
254
MET
228
A
GLU
229
n
255
GLU
229
A
LEU
230
n
256
LEU
230
A
VAL
231
n
257
VAL
231
A
GLU
232
n
258
GLU
232
A
THR
233
n
259
THR
233
A
ARG
234
n
260
ARG
234
A
PRO
235
n
261
PRO
235
A
ALA
236
n
262
ALA
236
A
GLY
237
n
263
GLY
237
A
ASP
238
n
264
ASP
238
A
GLY
239
n
265
GLY
239
A
THR
240
n
266
THR
240
A
PHE
241
n
267
PHE
241
A
GLN
242
n
268
GLN
242
A
LYS
243
n
269
LYS
243
A
TRP
244
n
270
TRP
244
A
ALA
245
n
271
ALA
245
A
SER
246
n
272
SER
246
A
VAL
247
n
273
VAL
247
A
VAL
248
n
274
VAL
248
A
VAL
249
n
275
VAL
249
A
PRO
250
n
276
PRO
250
A
LEU
251
n
277
LEU
251
A
GLY
252
n
278
GLY
252
A
LYS
253
n
279
LYS
253
A
GLU
254
n
280
GLU
254
A
GLN
255
n
281
GLN
255
A
TYR
256
n
282
TYR
256
A
TYR
257
n
283
TYR
257
A
THR
258
n
284
THR
258
A
CYS
259
n
285
CYS
259
A
HIS
260
n
286
HIS
260
A
VAL
261
n
287
VAL
261
A
TYR
262
n
288
TYR
262
A
HIS
263
n
289
HIS
263
A
GLN
264
n
290
GLN
264
A
GLY
265
n
291
GLY
265
A
LEU
266
n
292
LEU
266
A
PRO
267
n
293
PRO
267
A
GLU
268
n
294
GLU
268
A
PRO
269
n
295
PRO
269
A
LEU
270
n
296
LEU
270
A
THR
271
n
297
THR
271
A
LEU
272
n
298
LEU
272
A
ARG
273
n
299
ARG
273
A
TRP
274
n
300
TRP
274
A
n
301
275
A
n
302
276
A
n
303
277
A
n
304
278
A
n
1
0
B
ILE
1
n
2
ILE
1
B
GLN
2
n
3
GLN
2
B
LYS
3
n
4
LYS
3
B
THR
4
n
5
THR
4
B
PRO
5
n
6
PRO
5
B
GLN
6
n
7
GLN
6
B
ILE
7
n
8
ILE
7
B
GLN
8
n
9
GLN
8
B
VAL
9
n
10
VAL
9
B
TYR
10
n
11
TYR
10
B
SER
11
n
12
SER
11
B
ARG
12
n
13
ARG
12
B
HIS
13
n
14
HIS
13
B
PRO
14
n
15
PRO
14
B
PRO
15
n
16
PRO
15
B
GLU
16
n
17
GLU
16
B
ASN
17
n
18
ASN
17
B
GLY
18
n
19
GLY
18
B
LYS
19
n
20
LYS
19
B
PRO
20
n
21
PRO
20
B
ASN
21
n
22
ASN
21
B
ILE
22
n
23
ILE
22
B
LEU
23
n
24
LEU
23
B
ASN
24
n
25
ASN
24
B
CYS
25
n
26
CYS
25
B
TYR
26
n
27
TYR
26
B
VAL
27
n
28
VAL
27
B
THR
28
n
29
THR
28
B
GLN
29
n
30
GLN
29
B
PHE
30
n
31
PHE
30
B
HIS
31
n
32
HIS
31
B
PRO
32
n
33
PRO
32
B
PRO
33
n
34
PRO
33
B
HIS
34
n
35
HIS
34
B
ILE
35
n
36
ILE
35
B
GLU
36
n
37
GLU
36
B
ILE
37
n
38
ILE
37
B
GLN
38
n
39
GLN
38
B
MET
39
n
40
MET
39
B
LEU
40
n
41
LEU
40
B
LYS
41
n
42
LYS
41
B
ASN
42
n
43
ASN
42
B
GLY
43
n
44
GLY
43
B
LYS
44
n
45
LYS
44
B
LYS
45
n
46
LYS
45
B
ILE
46
n
47
ILE
46
B
PRO
47
n
48
PRO
47
B
LYS
48
n
49
LYS
48
B
VAL
49
n
50
VAL
49
B
GLU
50
n
51
GLU
50
B
MET
51
n
52
MET
51
B
SER
52
n
53
SER
52
B
ASP
53
n
54
ASP
53
B
MET
54
n
55
MET
54
B
SER
55
n
56
SER
55
B
PHE
56
n
57
PHE
56
B
SER
57
n
58
SER
57
B
LYS
58
n
59
LYS
58
B
ASP
59
n
60
ASP
59
B
TRP
60
n
61
TRP
60
B
SER
61
n
62
SER
61
B
PHE
62
n
63
PHE
62
B
TYR
63
n
64
TYR
63
B
ILE
64
n
65
ILE
64
B
LEU
65
n
66
LEU
65
B
ALA
66
n
67
ALA
66
B
HIS
67
n
68
HIS
67
B
THR
68
n
69
THR
68
B
GLU
69
n
70
GLU
69
B
PHE
70
n
71
PHE
70
B
THR
71
n
72
THR
71
B
PRO
72
n
73
PRO
72
B
THR
73
n
74
THR
73
B
GLU
74
n
75
GLU
74
B
THR
75
n
76
THR
75
B
ASP
76
n
77
ASP
76
B
THR
77
n
78
THR
77
B
TYR
78
n
79
TYR
78
B
ALA
79
n
80
ALA
79
B
CYS
80
n
81
CYS
80
B
ARG
81
n
82
ARG
81
B
VAL
82
n
83
VAL
82
B
LYS
83
n
84
LYS
83
B
HIS
84
n
85
HIS
84
B
ASP
85
n
86
ASP
85
B
SER
86
n
87
SER
86
B
MET
87
n
88
MET
87
B
ALA
88
n
89
ALA
88
B
GLU
89
n
90
GLU
89
B
PRO
90
n
91
PRO
90
B
LYS
91
n
92
LYS
91
B
THR
92
n
93
THR
92
B
VAL
93
n
94
VAL
93
B
TYR
94
n
95
TYR
94
B
TRP
95
n
96
TRP
95
B
ASP
96
n
97
ASP
96
B
ARG
97
n
98
ARG
97
B
ASP
98
n
99
ASP
98
B
MET
99
n
100
MET
99
B
PHE
1
n
1
PHE
1
C
ALA
2
n
2
ALA
2
C
PRO
3
n
3
PRO
3
C
GLY
4
n
4
GLY
4
C
ASN
5
n
5
ASN
5
C
TYR
6
n
6
TYR
6
C
PRO
7
n
7
PRO
7
C
ALA
8
n
8
ALA
8
C
TRP
9
n
9
TRP
9
C
0.5175
0.1131
-0.1458
0.2925
-0.0637
0.0813
-0.0244
0.0303
-0.0690
-0.0173
-0.0091
0.0290
-0.0185
0.0067
0.0335
0.0501
-0.0034
-0.0049
0.0238
-0.0133
0.0459
refined
42.1529
18.5756
-0.4018
X-RAY DIFFRACTION
1.2975
-0.4759
-0.8882
0.3878
-0.0204
1.2258
-0.0828
0.0221
0.0501
0.0348
0.0507
-0.0306
0.0509
-0.0765
0.0322
0.0162
0.0046
-0.0089
0.0500
0.0031
0.0619
refined
29.4617
29.4433
7.0325
X-RAY DIFFRACTION
0.4414
0.5347
-0.9572
0.9621
-1.5753
2.6261
-0.0866
0.0090
-0.0611
-0.0170
-0.1733
-0.1703
0.0742
0.2247
0.2599
0.0694
-0.0434
-0.0112
0.1110
0.0563
0.0384
refined
58.2439
25.4264
-5.4092
X-RAY DIFFRACTION
A
1
A
274
X-RAY DIFFRACTION
1
B
1
B
99
X-RAY DIFFRACTION
2
C
1
C
9
X-RAY DIFFRACTION
3
author_and_software_defined_assembly
PISA
3
trimeric
6580
-50
18650
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
GLU
46
A
O
GLU
72
A
N
ARG
35
A
N
ARG
61
A
O
VAL
34
A
O
VAL
60
A
N
GLY
26
A
N
GLY
52
A
O
VAL
25
A
O
VAL
51
A
N
PHE
8
A
N
PHE
34
A
N
VAL
9
A
N
VAL
35
A
O
VAL
97
A
O
VAL
123
A
N
GLU
102
A
N
GLU
128
A
O
LEU
110
A
O
LEU
136
A
N
GLN
114
A
N
GLN
140
A
O
LEU
126
A
O
LEU
152
A
N
ALA
125
A
N
ALA
151
A
O
THR
134
A
O
THR
160
A
N
HIS
188
A
N
HIS
214
A
O
TRP
204
A
O
TRP
230
A
N
CYS
203
A
N
CYS
229
A
O
ALA
245
A
O
ALA
271
A
O
SER
246
A
O
SER
272
A
N
GLU
229
A
N
GLU
255
A
N
HIS
188
A
N
HIS
214
A
O
TRP
204
A
O
TRP
230
A
N
CYS
203
A
N
CYS
229
A
O
ALA
245
A
O
ALA
271
A
O
GLN
242
A
O
GLN
268
A
N
ARG
234
A
N
ARG
260
A
O
GLU
222
A
O
GLU
248
A
N
LEU
219
A
N
LEU
245
A
N
THR
216
A
N
THR
242
A
O
HIS
260
A
O
HIS
286
A
N
CYS
259
A
N
CYS
285
A
O
LEU
272
A
O
LEU
298
B
N
GLN
8
B
N
GLN
9
B
O
TYR
26
B
O
TYR
27
B
N
PHE
30
B
N
PHE
31
B
O
PHE
62
B
O
PHE
63
B
O
HIS
67
B
O
HIS
68
B
N
GLU
50
B
N
GLU
51
B
O
LYS
44
B
O
LYS
45
B
N
LYS
41
B
N
LYS
42
B
N
GLN
38
B
N
GLN
39
B
O
ARG
81
B
O
ARG
82
B
N
CYS
80
B
N
CYS
81
B
O
VAL
93
B
O
VAL
94
1
A
MET
-25
A
MET
1
1
Y
1
A
GLY
-24
A
GLY
2
1
Y
1
A
SER
-23
A
SER
3
1
Y
1
A
SER
-22
A
SER
4
1
Y
1
A
HIS
-21
A
HIS
5
1
Y
1
A
HIS
-20
A
HIS
6
1
Y
1
A
HIS
-19
A
HIS
7
1
Y
1
A
HIS
-18
A
HIS
8
1
Y
1
A
HIS
-17
A
HIS
9
1
Y
1
A
HIS
-16
A
HIS
10
1
Y
1
A
SER
-15
A
SER
11
1
Y
1
A
SER
-14
A
SER
12
1
Y
1
A
GLY
-13
A
GLY
13
1
Y
1
A
LEU
-12
A
LEU
14
1
Y
1
A
VAL
-11
A
VAL
15
1
Y
1
A
PRO
-10
A
PRO
16
1
Y
1
A
ARG
-9
A
ARG
17
1
Y
1
A
GLY
-8
A
GLY
18
1
Y
1
A
SER
-7
A
SER
19
1
Y
1
A
HIS
-6
A
HIS
20
1
Y
1
A
MET
-5
A
MET
21
1
Y
1
A
LEU
-4
A
LEU
22
1
Y
1
A
GLU
-3
A
GLU
23
1
Y
1
A
ASP
-2
A
ASP
24
1
Y
1
A
PRO
-1
A
PRO
25
1
Y
1
A
MET
0
A
MET
26
1
Y
1
A
GLU
275
A
GLU
301
1
Y
1
A
PRO
276
A
PRO
302
1
Y
1
A
PRO
277
A
PRO
303
1
Y
1
A
PRO
278
A
PRO
304
1
Y
1
B
MET
0
B
MET
1
1
Y
1
A
ASP
29
50.11
-124.23
1
A
GLU
196
79.11
34.84
1
A
LEU
224
-102.86
50.95
83.420
28.1050
14.060
0.0800
0.0000
0.0000
0.0700
0.0000
-0.1500
0.9440
0.9220
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED
0.2345
0.2009
0.2026
2.0000
42.9800
sparse
1885
35766
37651
5.0000
99.8200
0.2140
0.1830
7.8070
0.1060
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1570
0.1450
0.7000
0.7000
1.0000
2vab
MAXIMUM LIKELIHOOD
MASK
2.0000
42.9800
104
3282
43.18
27.95
52
0
3126
382
0.005
0.019
3305
0.001
0.020
3039
1.053
1.953
4489
0.681
3.002
6994
5.881
5.000
389
32.578
23.353
170
12.340
15.000
537
13.622
15.000
27
0.068
0.200
461
0.004
0.021
3710
0.001
0.020
799
1.522
2.064
1535
1.522
2.064
1534
2.443
3.085
1916
0.283
0.267
2.052
129
2613
2742
20
100.000
0.259
0.290
0.253
2.108
117
2542
2659
20
100.000
0.240
0.281
0.248
2.169
154
2450
2604
20
100.000
0.234
0.243
0.227
2.236
129
2389
2518
20
100.000
0.211
0.292
0.220
2.309
123
2336
2459
20
100.000
0.202
0.285
0.232
2.390
120
2285
2405
20
100.000
0.210
0.230
0.216
2.480
110
2176
2287
20
99.956
0.195
0.262
0.220
2.581
115
2096
2212
20
99.955
0.195
0.215
0.207
2.696
109
2013
2122
20
100.000
0.182
0.246
0.210
2.827
108
1966
2074
20
100.000
0.189
0.258
0.210
2.980
102
1807
1910
20
99.948
0.187
0.198
0.194
3.161
93
1753
1850
20
99.784
0.175
0.204
0.198
3.378
95
1654
1752
20
99.829
0.181
0.224
0.189
3.648
101
1514
1616
20
99.938
0.174
0.232
0.175
3.996
66
1444
1513
20
99.802
0.168
0.196
0.152
4.466
60
1303
1370
20
99.489
0.150
0.193
0.153
5.153
34
1195
1231
20
99.838
0.151
0.246
0.190
6.304
45
998
1051
20
99.239
0.184
0.201
0.195
8.883
57
768
835
20
98.802
0.189
0.227
0.226
73.948
18
464
508
20
94.882
0.241
34.17
2.000
73.948
4PGE
37692
37692
0.061
0.123
0.106
1
6.584
9.100
144680
3.800
99.900
0.623
2.000
2.110
1.200
20919
5408
0.361
0.623
1
2.300
3.900
0
100.000
0.435
2.110
2.240
1.700
19867
5129
0.252
0.435
1
3.100
3.900
0
100.000
0.326
2.240
2.390
2.300
18781
4862
0.188
0.326
1
4.100
3.900
0
100.000
0.243
2.390
2.580
3.100
17510
4516
0.140
0.243
1
5.200
3.900
0
100.000
0.160
2.580
2.830
4.700
16195
4194
0.092
0.160
1
7.300
3.900
0
100.000
0.104
2.830
3.160
7.100
14532
3766
0.060
0.104
1
10.700
3.900
0
99.900
0.066
3.160
3.650
10.400
12898
3370
0.038
0.066
1
16.600
3.800
0
99.900
0.046
3.650
4.470
13.900
10685
2874
0.027
0.046
1
22.400
3.700
0
99.800
0.035
4.470
6.320
17.500
8597
2268
0.021
0.035
1
23.200
3.800
0
99.800
0.028
6.320
42.940
18.300
4696
1305
0.017
0.028
1
21.100
3.600
0
98.600
data scaling
SCALA
3.3.20
data scaling
XDS
refinement
REFMAC
refmac_5.7.0032
model building
Coot
data extraction
PDB_EXTRACT
3.14
MHC Class I in complex with modified Sendai virus nucleoprotein peptide FAPGNYPAW
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
4
N
N
4
N
N
5
N
N
4
N
N
4
N
N
4
N
N
6
N
N
6
N
N
6
N
N
The biological unit is the same as asymmetric unit
A
ALA
49
A
ALA
75
HELX_P
A
GLU
55
A
GLU
81
5
AA1
7
A
GLY
56
A
GLY
82
HELX_P
A
TYR
85
A
TYR
111
1
AA2
30
A
ASP
137
A
ASP
163
HELX_P
A
GLY
151
A
GLY
177
1
AA3
15
A
GLY
151
A
GLY
177
HELX_P
A
GLY
162
A
GLY
188
1
AA4
12
A
GLY
162
A
GLY
188
HELX_P
A
GLY
175
A
GLY
201
1
AA5
14
A
GLY
175
A
GLY
201
HELX_P
A
LEU
180
A
LEU
206
1
AA6
6
A
ILE
225
A
ILE
251
HELX_P
A
MET
228
A
MET
254
5
AA7
4
A
LYS
253
A
LYS
279
HELX_P
A
GLN
255
A
GLN
281
5
AA8
3
disulf
2.074
A
CYS
101
A
SG
CYS
127
1_555
A
CYS
164
A
SG
CYS
190
1_555
disulf
2.039
A
CYS
203
A
SG
CYS
229
1_555
A
CYS
259
A
SG
CYS
285
1_555
disulf
2.050
B
CYS
25
B
SG
CYS
26
1_555
B
CYS
80
B
SG
CYS
81
1_555
IMMUNE SYSTEM/PEPTIDE
IMMUNE SYSTEM, IMMUNOGLOBULIN DOMAIN, IMMUNE RESPONSE, IMMUNE SYSTEM-PEPTIDE complex
A
TYR
209
A
TYR
235
1
A
PRO
210
A
PRO
236
-1.19
B
HIS
31
B
HIS
32
1
B
PRO
32
B
PRO
33
3.50
HA1B_MOUSE
UNP
1
22
P01901
GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWERETQKAKGNEQSFRVDLRT
LLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYL
EGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGT
FQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWEPPP
B2MG_MOUSE
UNP
2
21
P01887
IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC
RVKHASMAEPKTVYWDRDM
4PGE
PDB
3
1
4PGE
22
299
4PGE
1
278
P01901
A
1
27
304
21
119
4PGE
1
99
P01887
B
2
2
100
1
9
4PGE
1
9
4PGE
C
3
1
9
1
initiating methionine
MET
-25
4PGE
A
P01901
UNP
1
1
expression tag
GLY
-24
4PGE
A
P01901
UNP
2
1
expression tag
SER
-23
4PGE
A
P01901
UNP
3
1
expression tag
SER
-22
4PGE
A
P01901
UNP
4
1
expression tag
HIS
-21
4PGE
A
P01901
UNP
5
1
expression tag
HIS
-20
4PGE
A
P01901
UNP
6
1
expression tag
HIS
-19
4PGE
A
P01901
UNP
7
1
expression tag
HIS
-18
4PGE
A
P01901
UNP
8
1
expression tag
HIS
-17
4PGE
A
P01901
UNP
9
1
expression tag
HIS
-16
4PGE
A
P01901
UNP
10
1
expression tag
SER
-15
4PGE
A
P01901
UNP
11
1
expression tag
SER
-14
4PGE
A
P01901
UNP
12
1
expression tag
GLY
-13
4PGE
A
P01901
UNP
13
1
expression tag
LEU
-12
4PGE
A
P01901
UNP
14
1
expression tag
VAL
-11
4PGE
A
P01901
UNP
15
1
expression tag
PRO
-10
4PGE
A
P01901
UNP
16
1
expression tag
ARG
-9
4PGE
A
P01901
UNP
17
1
expression tag
GLY
-8
4PGE
A
P01901
UNP
18
1
expression tag
SER
-7
4PGE
A
P01901
UNP
19
1
expression tag
HIS
-6
4PGE
A
P01901
UNP
20
1
expression tag
MET
-5
4PGE
A
P01901
UNP
21
1
expression tag
LEU
-4
4PGE
A
P01901
UNP
22
1
expression tag
GLU
-3
4PGE
A
P01901
UNP
23
1
expression tag
ASP
-2
4PGE
A
P01901
UNP
24
1
expression tag
PRO
-1
4PGE
A
P01901
UNP
25
1
expression tag
MET
0
4PGE
A
P01901
UNP
26
2
initiating methionine
MET
0
4PGE
B
P01887
UNP
1
2
ALA
variant
ASP
85
4PGE
B
P01887
UNP
105
86
8
4
4
4
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
46
A
GLU
72
A
PRO
47
A
PRO
73
A
THR
31
A
THR
57
A
ASP
37
A
ASP
63
A
ARG
21
A
ARG
47
A
VAL
28
A
VAL
54
A
HIS
3
A
HIS
29
A
VAL
12
A
VAL
38
A
THR
94
A
THR
120
A
VAL
103
A
VAL
129
A
LEU
109
A
LEU
135
A
TYR
118
A
TYR
144
A
CYS
121
A
CYS
147
A
LEU
126
A
LEU
152
A
TRP
133
A
TRP
159
A
ALA
135
A
ALA
161
A
LYS
186
A
LYS
212
A
SER
193
A
SER
219
A
LYS
198
A
LYS
224
A
PHE
208
A
PHE
234
A
PHE
241
A
PHE
267
A
PRO
250
A
PRO
276
A
GLU
229
A
GLU
255
A
LEU
230
A
LEU
256
A
LYS
186
A
LYS
212
A
SER
193
A
SER
219
A
LYS
198
A
LYS
224
A
PHE
208
A
PHE
234
A
PHE
241
A
PHE
267
A
PRO
250
A
PRO
276
A
ARG
234
A
ARG
260
A
PRO
235
A
PRO
261
A
GLU
222
A
GLU
248
A
GLU
223
A
GLU
249
A
THR
214
A
THR
240
A
LEU
219
A
LEU
245
A
TYR
257
A
TYR
283
A
TYR
262
A
TYR
288
A
LEU
270
A
LEU
296
A
LEU
272
A
LEU
298
B
GLN
6
B
GLN
7
B
SER
11
B
SER
12
B
ASN
21
B
ASN
22
B
PHE
30
B
PHE
31
B
PHE
62
B
PHE
63
B
PHE
70
B
PHE
71
B
GLU
50
B
GLU
51
B
PHE
56
B
PHE
57
B
LYS
44
B
LYS
45
B
LYS
45
B
LYS
46
B
GLU
36
B
GLU
37
B
LYS
41
B
LYS
42
B
TYR
78
B
TYR
79
B
LYS
83
B
LYS
84
B
LYS
91
B
LYS
92
B
TYR
94
B
TYR
95
binding site for residue GOL A 301
A
GOL
301
Software
8
binding site for residue MPD A 302
A
MPD
302
Software
6
binding site for residue GOL A 303
A
GOL
303
Software
2
binding site for residue GOL A 304
A
GOL
304
Software
3
binding site for residue MPD B 101
B
MPD
101
Software
5
binding site for residue GOL B 102
B
GOL
102
Software
4
binding site for residue GOL B 103
B
GOL
103
Software
7
binding site for residue GOL C 101
C
GOL
101
Software
5
A
MET
23
A
MET
49
8
1_555
A
VAL
25
A
VAL
51
8
1_555
A
GLU
32
A
GLU
58
8
1_555
A
ARG
35
A
ARG
61
8
1_555
B
MET
51
B
MET
52
8
1_555
B
SER
52
B
SER
53
8
1_555
B
ASP
53
B
ASP
54
8
1_555
B
MET
54
B
MET
55
8
1_555
A
PRO
47
A
PRO
73
6
1_554
A
ARG
48
A
ARG
74
6
1_554
A
ALA
49
A
ALA
75
6
1_554
A
ARG
50
A
ARG
76
6
1_554
A
ALA
135
A
ALA
161
6
1_555
A
ALA
136
A
ALA
162
6
1_555
A
GLY
1
A
GLY
27
2
2_655
A
THR
182
A
THR
208
2
1_555
A
GLY
16
A
GLY
42
3
4_455
A
HIS
192
A
HIS
218
3
1_555
A
SER
193
A
SER
219
3
1_555
A
ARG
21
A
ARG
47
5
1_555
A
MET
23
A
MET
49
5
1_555
B
PRO
33
B
PRO
34
5
1_555
B
HOH
219
M
HOH
5
1_555
B
HOH
224
M
HOH
5
1_555
A
GLY
207
A
GLY
233
4
1_555
B
ARG
12
B
ARG
13
4
1_555
B
HIS
13
B
HIS
14
4
1_555
B
PRO
14
B
PRO
15
4
1_555
A
HOH
447
L
HOH
7
1_555
B
VAL
9
B
VAL
10
7
1_555
B
TYR
10
B
TYR
11
7
1_555
B
SER
11
B
SER
12
7
1_555
B
TRP
95
B
TRP
96
7
1_555
B
ASP
96
B
ASP
97
7
1_555
B
HOH
212
M
HOH
7
1_555
A
LEU
156
A
LEU
182
5
1_555
C
PRO
3
C
PRO
3
5
1_555
C
GLY
4
C
GLY
4
5
1_555
C
ASN
5
C
ASN
5
5
1_555
C
HOH
205
N
HOH
5
1_555
18
P 21 21 2