0.017207
0.000000
0.000000
-0.000000
0.015731
0.000000
0.000000
-0.000000
0.007200
0.00000
0.00000
0.00000
Han, S.
Le, B.V.
Hajare, H.
Baxter, R.H.G.
Miller, S.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
58.116
63.569
138.884
C8 H9 N O4
183.161
(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid
L-peptide linking
C9 H10 Cl N O3
215.634
n
3-chloro-D-tyrosine
D-peptide linking
C4 H9 N O2
103.120
n
ALPHA-AMINOISOBUTYRIC ACID
L-peptide linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4 S
179.194
n
CARBOXYMETHYLATED CYSTEINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C3 H7 N O2
89.093
D-ALANINE
D-peptide linking
C5 H9 N O2
115.130
D-PROLINE
D-peptide linking
C6 H13 N O5
179.171
2-amino-2-deoxy-beta-D-glucopyranose
beta-D-glucosamine; 2-amino-2-deoxy-beta-D-glucose; 2-amino-2-deoxy-D-glucose; 2-amino-2-deoxy-glucose; D-GLUCOSAMINE
D-saccharide, beta linking
C8 H9 N O3
167.162
(2R)-amino(4-hydroxyphenyl)ethanoic acid
D-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C7 H11 N3 O2
169.181
n
N1-METHYLATED HISTIDINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C9 H10 Cl N O4
231.633
n
(betaR)-3-chloro-beta-hydroxy-L-tyrosine
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C10 H20 O2
172.265
8-METHYLNONANOIC ACID
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
N
O
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
N
O
Y
8
N
C
Y
9
N
C
N
10
S
C
N
11
N
C
N
12
N
O
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
O
Y
24
N
C
Y
25
N
C
Y
26
N
C
N
27
N
CL
Y
28
N
C
Y
29
N
C
Y
30
N
C
N
31
N
C
N
32
R
C
N
33
N
C
N
34
N
O
N
35
N
N
N
36
N
O
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
N
N
48
N
C
N
49
N
C
N
50
N
O
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
N
N
64
S
C
N
65
N
C
N
66
N
O
N
67
N
C
N
68
N
O
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
N
N
77
S
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
C
N
83
N
N
N
84
N
C
N
85
N
N
N
86
N
N
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
S
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
C
N
109
N
O
N
110
N
N
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
S
C
N
122
N
C
N
123
N
O
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
R
C
N
138
N
C
N
139
N
S
N
140
N
C
N
141
N
C
N
142
N
O
N
143
N
O
N
144
N
C
N
145
N
O
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
R
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
S
N
162
N
O
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
R
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
R
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
O
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
R
C
N
201
R
C
N
202
R
C
N
203
S
C
N
204
R
C
N
205
N
C
N
206
N
N
N
207
N
O
N
208
N
O
N
209
N
O
N
210
N
O
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
R
C
N
227
N
C
N
228
N
O
N
229
N
O
Y
230
N
C
Y
231
N
C
Y
232
N
C
Y
233
N
C
N
234
N
O
Y
235
N
C
Y
236
N
C
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
N
N
247
S
C
N
248
N
C
N
249
N
O
N
250
N
C
N
251
N
C
N
252
N
C
N
253
N
O
N
254
N
N
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
C
N
273
N
O
N
274
N
O
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
N
C
N
287
N
C
N
288
N
O
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
O
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
N
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
S
C
N
338
N
C
N
339
N
C
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
C
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
C
N
385
N
N
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
S
C
N
403
S
C
N
404
S
C
N
405
S
C
N
406
R
C
N
407
N
C
N
408
N
O
N
409
N
O
N
410
N
O
N
411
N
O
N
412
N
O
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
N
N
427
S
C
N
428
N
C
N
429
N
O
N
430
N
C
N
431
N
C
N
432
N
S
N
433
N
C
N
434
N
O
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
N
N
447
S
C
N
448
N
C
N
449
N
O
N
450
N
C
Y
451
N
C
Y
452
N
N
Y
453
N
C
Y
454
N
C
Y
455
N
N
N
456
N
C
N
457
N
O
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
R
C
N
470
R
C
N
471
R
C
N
472
S
C
N
473
R
C
N
474
N
C
N
475
N
C
N
476
N
C
N
477
N
N
N
478
N
O
N
479
N
O
N
480
N
O
N
481
N
O
N
482
N
O
N
483
N
O
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
N
N
500
S
C
N
501
N
O
Y
502
N
C
Y
503
N
C
Y
504
N
C
Y
505
N
C
Y
506
N
C
Y
507
N
C
N
508
R
C
N
509
N
CL
N
510
N
O
N
511
N
C
N
512
N
O
N
513
N
O
N
514
N
H
N
515
N
H
N
516
N
H
N
517
N
H
N
518
N
H
N
519
N
H
N
520
N
H
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
N
N
525
S
C
N
526
N
C
N
527
N
O
N
528
N
C
Y
529
N
C
Y
530
N
C
Y
531
N
C
Y
532
N
C
Y
533
N
C
Y
534
N
C
N
535
N
O
N
536
N
H
N
537
N
H
N
538
N
H
N
539
N
H
N
540
N
H
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
P
N
548
N
O
N
549
N
O
N
550
N
O
N
551
N
O
N
552
N
N
N
553
S
C
N
554
N
C
N
555
N
O
N
556
N
C
N
557
N
C
N
558
N
C
N
559
N
O
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
H
N
568
N
H
N
569
N
N
N
570
S
C
N
571
N
C
N
572
N
O
N
573
N
C
N
574
N
O
N
575
N
O
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
C
N
584
N
C
N
585
N
C
N
586
N
C
N
587
N
C
N
588
N
C
N
589
N
C
N
590
N
C
N
591
N
C
N
592
N
C
N
593
N
O
N
594
N
O
N
595
N
H
N
596
N
H
N
597
N
H
N
598
N
H
N
599
N
H
N
600
N
H
N
601
N
H
N
602
N
H
N
603
N
H
N
604
N
H
N
605
N
H
N
606
N
H
N
607
N
H
N
608
N
H
N
609
N
H
N
610
N
H
N
611
N
H
N
612
N
H
N
613
N
H
N
614
N
H
N
615
N
N
N
616
S
C
N
617
N
C
N
618
N
O
N
619
R
C
N
620
N
O
N
621
N
C
N
622
N
O
N
623
N
H
N
624
N
H
N
625
N
H
N
626
N
H
N
627
N
H
N
628
N
H
N
629
N
H
N
630
N
H
N
631
N
H
N
632
N
N
N
633
S
C
N
634
N
C
N
635
N
O
N
636
N
C
Y
637
N
C
Y
638
N
C
Y
639
N
C
Y
640
N
N
Y
641
N
C
Y
642
N
C
Y
643
N
C
Y
644
N
C
Y
645
N
C
N
646
N
O
N
647
N
H
N
648
N
H
N
649
N
H
N
650
N
H
N
651
N
H
N
652
N
H
N
653
N
H
N
654
N
H
N
655
N
H
N
656
N
H
N
657
N
H
N
658
N
H
N
659
N
N
N
660
S
C
N
661
N
C
N
662
N
O
N
663
N
C
Y
664
N
C
Y
665
N
C
Y
666
N
C
Y
667
N
C
Y
668
N
C
Y
669
N
C
N
670
N
O
N
671
N
O
N
672
N
H
N
673
N
H
N
674
N
H
N
675
N
H
N
676
N
H
N
677
N
H
N
678
N
H
N
679
N
H
N
680
N
H
N
681
N
H
N
682
N
H
N
683
N
N
N
684
S
C
N
685
N
C
N
686
N
O
N
687
N
C
N
688
N
C
N
689
N
C
N
690
N
O
N
691
N
H
N
692
N
H
N
693
N
H
N
694
N
H
N
695
N
H
N
696
N
H
N
697
N
H
N
698
N
H
N
699
N
H
N
700
N
H
N
701
N
H
N
1
N
sing
N
2
N
sing
Y
3
N
sing
Y
4
N
doub
Y
5
N
doub
Y
6
N
sing
N
7
N
sing
Y
8
N
doub
Y
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
doub
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
doub
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
doub
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
doub
N
224
N
sing
N
225
N
sing
Y
226
N
doub
Y
227
N
sing
Y
228
N
sing
N
229
N
sing
Y
230
N
doub
N
231
N
sing
N
232
N
sing
Y
233
N
sing
N
234
N
sing
Y
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
Y
308
N
sing
Y
309
N
doub
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
Y
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
doub
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
Y
440
N
sing
Y
441
N
doub
Y
442
N
sing
N
443
N
sing
Y
444
N
sing
N
445
N
sing
Y
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
Y
484
N
sing
Y
485
N
doub
Y
486
N
doub
Y
487
N
sing
Y
488
N
doub
N
489
N
sing
Y
490
N
sing
N
491
N
sing
N
492
N
doub
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
N
513
N
doub
N
514
N
sing
N
515
N
sing
N
516
N
sing
N
517
N
sing
Y
518
N
doub
Y
519
N
sing
Y
520
N
sing
N
521
N
sing
Y
522
N
doub
N
523
N
sing
Y
524
N
doub
N
525
N
sing
Y
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
doub
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
doub
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
sing
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
sing
N
554
N
sing
N
555
N
sing
N
556
N
sing
N
557
N
doub
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
sing
N
565
N
sing
N
566
N
sing
N
567
N
doub
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
N
576
N
sing
N
577
N
sing
N
578
N
sing
N
579
N
sing
N
580
N
sing
N
581
N
sing
N
582
N
sing
N
583
N
sing
N
584
N
sing
N
585
N
sing
N
586
N
sing
N
587
N
sing
N
588
N
sing
N
589
N
sing
N
590
N
sing
N
591
N
sing
N
592
N
sing
N
593
N
sing
N
594
N
sing
N
595
N
sing
N
596
N
sing
N
597
N
sing
N
598
N
sing
N
599
N
sing
N
600
N
sing
N
601
N
doub
N
602
N
sing
N
603
N
sing
N
604
N
sing
N
605
N
sing
N
606
N
sing
N
607
N
sing
N
608
N
sing
N
609
N
sing
N
610
N
sing
N
611
N
sing
N
612
N
sing
N
613
N
sing
N
614
N
sing
N
615
N
sing
N
616
N
sing
N
617
N
doub
N
618
N
sing
N
619
N
sing
N
620
N
sing
N
621
N
sing
Y
622
N
doub
Y
623
N
sing
Y
624
N
sing
N
625
N
sing
Y
626
N
doub
Y
627
N
sing
Y
628
N
sing
N
629
N
sing
Y
630
N
sing
Y
631
N
doub
N
632
N
sing
Y
633
N
doub
N
634
N
sing
Y
635
N
sing
N
636
N
sing
N
637
N
sing
N
638
N
sing
N
639
N
sing
N
640
N
sing
N
641
N
sing
N
642
N
sing
N
643
N
sing
N
644
N
sing
N
645
N
doub
N
646
N
sing
N
647
N
sing
N
648
N
sing
N
649
N
sing
Y
650
N
doub
Y
651
N
sing
Y
652
N
sing
N
653
N
sing
Y
654
N
doub
N
655
N
sing
Y
656
N
doub
N
657
N
sing
Y
658
N
sing
N
659
N
sing
N
660
N
sing
N
661
N
sing
N
662
N
sing
N
663
N
sing
N
664
N
sing
N
665
N
sing
N
666
N
sing
N
667
N
sing
N
668
N
sing
N
669
N
doub
N
670
N
sing
N
671
N
sing
N
672
N
sing
N
673
N
sing
N
674
N
sing
N
675
N
sing
N
676
N
sing
N
677
N
sing
N
678
N
sing
N
679
N
sing
N
680
N
sing
US
J.Org.Chem.
JOCEAH
0035
0022-3263
79
8550
8556
10.1021/jo501625f
25147913
X-ray Crystal Structure of Teicoplanin A2-2 Bound to a Catalytic Peptide Sequence via the Carrier Protein Strategy.
2014
10.2210/pdb4pjz/pdb
pdb_00004pjz
100
1
CCD
2013-11-22
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
24-ID-E
APS
0.97918
SYNCHROTRON
APS BEAMLINE 24-ID-E
1206.984
TEICOPLANIN-A2-2
1
nat
polymer
19553.346
Lysozyme
3.2.1.17
C54T/C97A
1
man
polymer
179.171
2-amino-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
172.265
8-METHYLNONANOIC ACID
1
syn
non-polymer
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
non-polymer
180.156
alpha-D-mannopyranose
1
man
non-polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
18.015
water
132
nat
water
no
yes
(GHP)(3MY)(3FG)(GHP)(GHP)(OMY)(3FG)
GYXGGYX
B
polypeptide(L)
no
yes
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNLGSS(CCS)G(MHS)(DPR)(AIB)(DAL)(DAL)
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNLGSSCGHPAAA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
174
e, T4Tp126
10665
Enterobacteria phage T4
562
Escherichia coli
Rosetta(DE3)
Plasmid
Biological sequence
pTXB1
sample
1
7
1867
Actinoplanes teichomyceticus
3.09
60.19
THIN PLATES
VAPOR DIFFUSION, HANGING DROP
7.4
19% PEG 3350 ,0.2 M sodium potassium phosphate
293
citation
entity
entity_src_gen
entity_src_nat
pdbx_audit_support
pdbx_database_status
pdbx_struct_oper_list
entity_poly
pdbx_audit_support
chem_comp
entity
pdbx_chem_comp_identifier
pdbx_entity_nonpoly
refine_hist
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Author supporting evidence
Database references
Derived calculations
Other
Source and taxonomy
Structure summary
Author supporting evidence
Polymer sequence
Data collection
Derived calculations
Refinement description
Structure summary
Data collection
Database references
Derived calculations
Structure summary
1
0
2014-09-10
1
1
2014-10-01
1
2
2017-09-20
2
0
2019-12-25
2
1
2020-07-29
2
2
2023-12-27
_citation.journal_id_CSD
_entity.pdbx_description
_entity.src_method
_entity_src_gen.pdbx_alt_source_flag
_entity_src_nat.pdbx_alt_source_flag
_pdbx_audit_support.funding_organization
_pdbx_database_status.pdb_format_compatible
_pdbx_struct_oper_list.symmetry_operation
_entity_poly.pdbx_seq_one_letter_code_can
_pdbx_audit_support.funding_organization
_chem_comp.name
_chem_comp.type
_entity.pdbx_description
_pdbx_entity_nonpoly.name
_refine_hist.number_atoms_solvent
_refine_hist.number_atoms_total
_refine_hist.pdbx_number_atoms_ligand
_refine_hist.pdbx_number_atoms_nucleic_acid
_refine_hist.pdbx_number_atoms_protein
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM-068649
DGlcpNb
b-D-glucopyranosamine
b-D-GlcpN
GlcN
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
N
RCSB
Y
RCSB
2014-05-13
REL
REL
1
A
O
HOH
402
5.90
GCS
2-amino-2-deoxy-beta-D-glucopyranose
T55
8-METHYLNONANOIC ACID
NAG
2-acetamido-2-deoxy-beta-D-glucopyranose
MAN
alpha-D-mannopyranose
PO4
PHOSPHATE ION
GOL
GLYCEROL
HOH
water
TEICOPLANIN IS A FAMILY OF TETRACYCLIC GLYCOPEPTIDE ANTIBIOTICS. THE SCAFFOLD IS A HEPTAPEPTIDE FURTHER GLYCOSYLATED BY THREE MONO SACCHARIDES: MANNOSE, N-ACETYLGLUCOSAMINE AND BETA-D-GLUCOSAMINE AND ONLY DIFFER BY THE SIDE CHAIN ATTACHED TO THE LATTER. TEICOPLANIN A2-2 HAS 8-METHYLNONANOIC ACID ATTACHED TO GLUCOSAMINE.
Antibiotic
TEICOPLANIN-A2-2
Glycopeptide
GCS
8
3
GCS
GCS
101
B
T55
9
4
T55
T55
102
B
NAG
10
5
NAG
NAG
103
B
MAN
11
6
MAN
MAN
104
B
PO4
1
7
PO4
PO4
105
B
GOL
3
8
GOL
GOL
106
B
PO4
2
7
PO4
PO4
201
A
GOL
4
8
GOL
GOL
202
A
HOH
55
9
HOH
HOH
201
B
HOH
16
9
HOH
HOH
202
B
HOH
96
9
HOH
HOH
203
B
HOH
58
9
HOH
HOH
204
B
HOH
43
9
HOH
HOH
205
B
HOH
127
9
HOH
HOH
206
B
HOH
101
9
HOH
HOH
207
B
HOH
73
9
HOH
HOH
208
B
HOH
15
9
HOH
HOH
209
B
HOH
36
9
HOH
HOH
210
B
HOH
74
9
HOH
HOH
211
B
HOH
76
9
HOH
HOH
212
B
HOH
89
9
HOH
HOH
213
B
HOH
109
9
HOH
HOH
214
B
HOH
122
9
HOH
HOH
215
B
HOH
131
9
HOH
HOH
216
B
HOH
111
9
HOH
HOH
301
A
HOH
30
9
HOH
HOH
302
A
HOH
42
9
HOH
HOH
303
A
HOH
6
9
HOH
HOH
304
A
HOH
124
9
HOH
HOH
305
A
HOH
5
9
HOH
HOH
306
A
HOH
48
9
HOH
HOH
307
A
HOH
70
9
HOH
HOH
308
A
HOH
7
9
HOH
HOH
309
A
HOH
28
9
HOH
HOH
310
A
HOH
86
9
HOH
HOH
311
A
HOH
78
9
HOH
HOH
312
A
HOH
64
9
HOH
HOH
313
A
HOH
108
9
HOH
HOH
314
A
HOH
57
9
HOH
HOH
315
A
HOH
12
9
HOH
HOH
316
A
HOH
32
9
HOH
HOH
317
A
HOH
2
9
HOH
HOH
318
A
HOH
22
9
HOH
HOH
319
A
HOH
54
9
HOH
HOH
320
A
HOH
83
9
HOH
HOH
321
A
HOH
107
9
HOH
HOH
322
A
HOH
13
9
HOH
HOH
323
A
HOH
20
9
HOH
HOH
324
A
HOH
94
9
HOH
HOH
325
A
HOH
68
9
HOH
HOH
326
A
HOH
112
9
HOH
HOH
327
A
HOH
92
9
HOH
HOH
328
A
HOH
35
9
HOH
HOH
329
A
HOH
129
9
HOH
HOH
330
A
HOH
75
9
HOH
HOH
331
A
HOH
98
9
HOH
HOH
332
A
HOH
52
9
HOH
HOH
333
A
HOH
21
9
HOH
HOH
334
A
HOH
71
9
HOH
HOH
335
A
HOH
14
9
HOH
HOH
336
A
HOH
97
9
HOH
HOH
337
A
HOH
8
9
HOH
HOH
338
A
HOH
3
9
HOH
HOH
339
A
HOH
26
9
HOH
HOH
340
A
HOH
114
9
HOH
HOH
341
A
HOH
128
9
HOH
HOH
342
A
HOH
40
9
HOH
HOH
343
A
HOH
81
9
HOH
HOH
344
A
HOH
125
9
HOH
HOH
345
A
HOH
123
9
HOH
HOH
346
A
HOH
63
9
HOH
HOH
347
A
HOH
1
9
HOH
HOH
348
A
HOH
115
9
HOH
HOH
349
A
HOH
4
9
HOH
HOH
350
A
HOH
9
9
HOH
HOH
351
A
HOH
10
9
HOH
HOH
352
A
HOH
11
9
HOH
HOH
353
A
HOH
17
9
HOH
HOH
354
A
HOH
18
9
HOH
HOH
355
A
HOH
19
9
HOH
HOH
356
A
HOH
23
9
HOH
HOH
357
A
HOH
24
9
HOH
HOH
358
A
HOH
25
9
HOH
HOH
359
A
HOH
27
9
HOH
HOH
360
A
HOH
29
9
HOH
HOH
361
A
HOH
31
9
HOH
HOH
362
A
HOH
33
9
HOH
HOH
363
A
HOH
34
9
HOH
HOH
364
A
HOH
37
9
HOH
HOH
365
A
HOH
38
9
HOH
HOH
366
A
HOH
39
9
HOH
HOH
367
A
HOH
41
9
HOH
HOH
368
A
HOH
44
9
HOH
HOH
369
A
HOH
45
9
HOH
HOH
370
A
HOH
46
9
HOH
HOH
371
A
HOH
47
9
HOH
HOH
372
A
HOH
49
9
HOH
HOH
373
A
HOH
50
9
HOH
HOH
374
A
HOH
51
9
HOH
HOH
375
A
HOH
53
9
HOH
HOH
376
A
HOH
56
9
HOH
HOH
377
A
HOH
59
9
HOH
HOH
378
A
HOH
60
9
HOH
HOH
379
A
HOH
61
9
HOH
HOH
380
A
HOH
62
9
HOH
HOH
381
A
HOH
65
9
HOH
HOH
382
A
HOH
66
9
HOH
HOH
383
A
HOH
67
9
HOH
HOH
384
A
HOH
69
9
HOH
HOH
385
A
HOH
72
9
HOH
HOH
386
A
HOH
77
9
HOH
HOH
387
A
HOH
79
9
HOH
HOH
388
A
HOH
80
9
HOH
HOH
389
A
HOH
82
9
HOH
HOH
390
A
HOH
84
9
HOH
HOH
391
A
HOH
85
9
HOH
HOH
392
A
HOH
87
9
HOH
HOH
393
A
HOH
88
9
HOH
HOH
394
A
HOH
90
9
HOH
HOH
395
A
HOH
91
9
HOH
HOH
396
A
HOH
93
9
HOH
HOH
397
A
HOH
95
9
HOH
HOH
398
A
HOH
99
9
HOH
HOH
399
A
HOH
100
9
HOH
HOH
400
A
HOH
102
9
HOH
HOH
401
A
HOH
103
9
HOH
HOH
402
A
HOH
104
9
HOH
HOH
403
A
HOH
105
9
HOH
HOH
404
A
HOH
106
9
HOH
HOH
405
A
HOH
110
9
HOH
HOH
406
A
HOH
113
9
HOH
HOH
407
A
HOH
116
9
HOH
HOH
408
A
HOH
117
9
HOH
HOH
409
A
HOH
118
9
HOH
HOH
410
A
HOH
119
9
HOH
HOH
411
A
HOH
120
9
HOH
HOH
412
A
HOH
121
9
HOH
HOH
413
A
HOH
126
9
HOH
HOH
414
A
HOH
130
9
HOH
HOH
415
A
HOH
132
9
HOH
HOH
416
A
GHP
1
n
1
GHP
1
B
3MY
2
n
2
3MY
2
B
3FG
3
n
3
3FG
3
B
GHP
4
n
4
GHP
4
B
GHP
5
n
5
GHP
5
B
OMY
6
n
6
OMY
6
B
3FG
7
n
7
3FG
7
B
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
GLU
5
n
5
GLU
5
A
MET
6
n
6
MET
6
A
LEU
7
n
7
LEU
7
A
ARG
8
n
8
ARG
8
A
ILE
9
n
9
ILE
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
LYS
16
n
16
LYS
16
A
ILE
17
n
17
ILE
17
A
TYR
18
n
18
TYR
18
A
LYS
19
n
19
LYS
19
A
ASP
20
n
20
ASP
20
A
THR
21
n
21
THR
21
A
GLU
22
n
22
GLU
22
A
GLY
23
n
23
GLY
23
A
TYR
24
n
24
TYR
24
A
TYR
25
n
25
TYR
25
A
THR
26
n
26
THR
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
GLY
30
n
30
GLY
30
A
HIS
31
n
31
HIS
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
THR
34
n
34
THR
34
A
LYS
35
n
35
LYS
35
A
SER
36
n
36
SER
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
ASN
40
n
40
ASN
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
SER
44
n
44
SER
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
LYS
48
n
48
LYS
48
A
ALA
49
n
49
ALA
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
ARG
52
n
52
ARG
52
A
ASN
53
n
53
ASN
53
A
THR
54
n
54
THR
54
A
ASN
55
n
55
ASN
55
A
GLY
56
n
56
GLY
56
A
VAL
57
n
57
VAL
57
A
ILE
58
n
58
ILE
58
A
THR
59
n
59
THR
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
LEU
66
n
66
LEU
66
A
PHE
67
n
67
PHE
67
A
ASN
68
n
68
ASN
68
A
GLN
69
n
69
GLN
69
A
ASP
70
n
70
ASP
70
A
VAL
71
n
71
VAL
71
A
ASP
72
n
72
ASP
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
ARG
76
n
76
ARG
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
LEU
79
n
79
LEU
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
ALA
82
n
82
ALA
82
A
LYS
83
n
83
LYS
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
PRO
86
n
86
PRO
86
A
VAL
87
n
87
VAL
87
A
TYR
88
n
88
TYR
88
A
ASP
89
n
89
ASP
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
ARG
96
n
96
ARG
96
A
ALA
97
n
97
ALA
97
A
ALA
98
n
98
ALA
98
A
LEU
99
n
99
LEU
99
A
ILE
100
n
100
ILE
100
A
ASN
101
n
101
ASN
101
A
MET
102
n
102
MET
102
A
VAL
103
n
103
VAL
103
A
PHE
104
n
104
PHE
104
A
GLN
105
n
105
GLN
105
A
MET
106
n
106
MET
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
GLY
110
n
110
GLY
110
A
VAL
111
n
111
VAL
111
A
ALA
112
n
112
ALA
112
A
GLY
113
n
113
GLY
113
A
PHE
114
n
114
PHE
114
A
THR
115
n
115
THR
115
A
ASN
116
n
116
ASN
116
A
SER
117
n
117
SER
117
A
LEU
118
n
118
LEU
118
A
ARG
119
n
119
ARG
119
A
MET
120
n
120
MET
120
A
LEU
121
n
121
LEU
121
A
GLN
122
n
122
GLN
122
A
GLN
123
n
123
GLN
123
A
LYS
124
n
124
LYS
124
A
ARG
125
n
125
ARG
125
A
TRP
126
n
126
TRP
126
A
ASP
127
n
127
ASP
127
A
GLU
128
n
128
GLU
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
ASN
132
n
132
ASN
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
LYS
135
n
135
LYS
135
A
SER
136
n
136
SER
136
A
ARG
137
n
137
ARG
137
A
TRP
138
n
138
TRP
138
A
TYR
139
n
139
TYR
139
A
ASN
140
n
140
ASN
140
A
GLN
141
n
141
GLN
141
A
THR
142
n
142
THR
142
A
PRO
143
n
143
PRO
143
A
ASN
144
n
144
ASN
144
A
ARG
145
n
145
ARG
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
ARG
148
n
148
ARG
148
A
VAL
149
n
149
VAL
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
THR
152
n
152
THR
152
A
PHE
153
n
153
PHE
153
A
ARG
154
n
154
ARG
154
A
THR
155
n
155
THR
155
A
GLY
156
n
156
GLY
156
A
THR
157
n
157
THR
157
A
TRP
158
n
158
TRP
158
A
ASP
159
n
159
ASP
159
A
ALA
160
n
160
ALA
160
A
TYR
161
n
161
TYR
161
A
LYS
162
n
162
LYS
162
A
n
163
163
A
n
164
164
A
n
165
165
A
n
166
166
A
n
167
167
A
n
168
168
A
n
169
169
A
n
170
170
A
DPR
171
n
171
DPR
171
A
AIB
172
n
172
AIB
172
A
DAL
173
n
173
DAL
173
A
DAL
174
n
174
DAL
174
A
author_defined_assembly
2
dimeric
B
NAG
103
-D
E
NAG
NAG
B
MAN
104
-D
F
MAN
MAN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
GHP
5
A
N
GHP
5
A
O
LEU
13
B
O
LEU
13
A
N
TYR
18
B
N
TYR
18
A
O
THR
26
B
O
THR
26
A
N
TYR
25
B
N
TYR
25
A
O
LEU
33
B
O
LEU
33
1
A
HOH
342
L
HOH
1
A
HOH
348
L
HOH
1
A
CG
LYS
162
B
CG
LYS
162
1
Y
1
A
CD
LYS
162
B
CD
LYS
162
1
Y
1
A
CE
LYS
162
B
CE
LYS
162
1
Y
1
A
NZ
LYS
162
B
NZ
LYS
162
1
Y
1
A
ASN
163
B
ASN
163
1
Y
1
A
LEU
164
B
LEU
164
1
Y
1
A
GLY
165
B
GLY
165
1
Y
1
A
SER
166
B
SER
166
1
Y
1
A
SER
167
B
SER
167
1
Y
1
A
CCS
168
B
CCS
168
1
Y
1
A
GLY
169
B
GLY
169
1
Y
1
A
MHS
170
B
MHS
170
1
Y
1
A
A
N
O
GLY
HOH
12
403
1.89
1
A
A
O
O
ARG
HOH
8
403
1.94
1
A
A
OE2
O
GLU
HOH
11
416
2.06
1
A
A
OE2
O
GLU
HOH
45
301
2.14
1
B
A
O
O
HOH
HOH
216
349
2.18
1
B
3FG
3
-132.35
-46.81
1
A
LYS
124
43.74
29.20
31.604
-0.91
-0.00
0.00
-1.18
-0.00
2.09
0.956
0.949
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.22842
0.19382
0.19555
1.87
69.44
1081
20212
5.1
98.66
3.389
0.099
RANDOM
1
THROUGHOUT
0.127
0.124
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
1.87
69.44
132
1598
69
0
1397
0.012
0.020
1511
0.001
0.020
1418
1.577
2.061
2048
0.825
3.000
3232
0.083
0.200
226
0.007
0.020
1702
0.002
0.020
360
2.060
2.867
700
2.058
2.867
699
2.881
4.273
872
2.881
4.273
873
3.199
3.333
811
3.195
3.333
811
4.867
4.855
1176
6.789
30.790
1493
6.713
30.553
1444
0.334
0.323
1.923
90
1423
20
96.80
1.87
69.44
4PJZ
20297
20297
0.099
1
15.7
15.7
5.1
98.9
0.855
1.88
1.91
1.79
1
4.3
99.2
refinement
REFMAC
5.8.0069
CRYSTAL STRUCTURE OF T4 LYSOZYME-GSS-PEPTIDE IN COMPLEX WITH TEICOPLANIN-A2-2
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
8
N
N
7
N
N
8
N
N
9
N
N
9
N
N
A
ASN
2
B
ASN
2
HELX_P
A
GLY
12
B
GLY
12
1
AA1
11
A
SER
38
B
SER
38
HELX_P
A
GLY
51
B
GLY
51
1
AA2
14
A
THR
59
B
THR
59
HELX_P
A
ASN
81
B
ASN
81
1
AA3
23
A
LYS
83
B
LYS
83
HELX_P
A
LEU
91
B
LEU
91
1
AA4
9
A
ASP
92
B
ASP
92
HELX_P
A
GLY
113
B
GLY
113
1
AA5
22
A
PHE
114
B
PHE
114
HELX_P
A
GLN
123
B
GLN
123
1
AA6
10
A
ARG
125
B
ARG
125
HELX_P
A
ALA
134
B
ALA
134
1
AA7
10
A
SER
136
B
SER
136
HELX_P
A
THR
142
B
THR
142
1
AA8
7
A
THR
142
B
THR
142
HELX_P
A
GLY
156
B
GLY
156
1
AA9
15
A
TRP
158
B
TRP
158
HELX_P
A
LYS
162
B
LYS
162
5
AB1
5
covale
1.336
both
B
GHP
1
A
C
GHP
1
1_555
B
3MY
2
A
N
3MY
2
1_555
covale
1.370
none
B
GHP
1
A
C3
GHP
1
1_555
B
3FG
3
A
OD1
3FG
3
1_555
covale
1.335
both
B
3MY
2
A
C
3MY
2
1_555
B
3FG
3
A
N
3FG
3
1_555
covale
1.425
one
B
3MY
2
A
OBD
3MY
2
1_555
B
GHP
4
A
C3
GHP
4
1_555
covale
1.343
one
B
3FG
3
A
C
3FG
3
1_555
B
GHP
4
A
N
GHP
4
1_555
covale
1.327
both
B
GHP
4
A
C
GHP
4
1_555
B
GHP
5
A
N
GHP
5
1_555
covale
1.403
none
B
GHP
4
A
C5
GHP
4
1_555
B
OMY
6
A
OCZ
OMY
6
1_555
covale
1.413
one
B
GHP
4
A
O4
GHP
4
1_555
B
GCS
101
C
C1
GCS
1_555
covale
1.349
both
B
GHP
5
A
C
GHP
5
1_555
B
OMY
6
A
N
OMY
6
1_555
covale
1.435
one
B
GHP
5
A
C3
GHP
5
1_555
B
3FG
7
A
CG1
3FG
7
1_555
covale
1.322
both
B
OMY
6
A
C
OMY
6
1_555
B
3FG
7
A
N
3FG
7
1_555
covale
1.433
one
B
OMY
6
A
ODE
OMY
6
1_555
B
NAG
103
E
C1
NAG
1_555
covale
1.431
one
B
3FG
7
A
OD1
3FG
7
1_555
B
MAN
104
F
C1
MAN
1_555
covale
1.316
both
B
GCS
101
C
N2
GCS
1_555
B
T55
102
D
C
T55
1_555
covale
1.330
both
A
DPR
171
B
C
DPR
171
1_555
A
AIB
172
B
N
AIB
172
1_555
covale
1.332
both
A
AIB
172
B
C
AIB
172
1_555
A
DAL
173
B
N
DAL
173
1_555
covale
1.333
both
A
DAL
173
B
C
DAL
173
1_555
A
DAL
174
B
N
DAL
174
1_555
Hydrolase/Antibiotic
site-selective catalyst, carrier protein approach, glycopeptide antibiotic, Hydrolase-Antibiotic complex
B
GHP
5
A
GHP
5
1
B
OMY
6
A
OMY
6
11.88
4PJZ
PDB
1
1
4PJZ
D9IEF7_BPT4
UNP
2
1
D9IEF7
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YKNL
1
7
4PJZ
1
7
4PJZ
B
1
1
7
1
164
4PJZ
1
164
D9IEF7
A
2
1
164
2
CYS
engineered mutation
THR
54
4PJZ
A
D9IEF7
UNP
54
54
2
CYS
engineered mutation
ALA
97
4PJZ
A
D9IEF7
UNP
97
97
2
insertion
GLY
165
4PJZ
A
D9IEF7
UNP
165
2
insertion
SER
166
4PJZ
A
D9IEF7
UNP
166
2
insertion
SER
167
4PJZ
A
D9IEF7
UNP
167
2
insertion
CCS
168
4PJZ
A
D9IEF7
UNP
168
2
insertion
GLY
169
4PJZ
A
D9IEF7
UNP
169
2
insertion
MHS
170
4PJZ
A
D9IEF7
UNP
170
2
insertion
DPR
171
4PJZ
A
D9IEF7
UNP
171
2
insertion
AIB
172
4PJZ
A
D9IEF7
UNP
172
2
insertion
DAL
173
4PJZ
A
D9IEF7
UNP
173
2
insertion
DAL
174
4PJZ
A
D9IEF7
UNP
174
4
anti-parallel
anti-parallel
anti-parallel
B
GHP
4
A
GHP
4
B
GHP
5
A
GHP
5
A
LEU
13
B
LEU
13
A
LYS
19
B
LYS
19
A
TYR
25
B
TYR
25
A
GLY
28
B
GLY
28
A
HIS
31
B
HIS
31
A
THR
34
B
THR
34
23
I 2 2 2