0.011210 0.000000 0.000000 0.000000 0.011210 0.000000 0.000000 0.000000 0.011210 0.00000 0.00000 0.00000 Wood, C.W. Burton, A.J. Thomson, A.R. Brady, R.L. Woolfson, D.N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 96 90.00 90.00 90.00 89.210 89.210 89.210 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking US Science SCIEAS 0038 1095-9203 346 485 488 10.1126/science.1257452 25342807 Computational design of water-soluble alpha-helical barrels. 2014 90 1 PIXEL 2014-02-09 PSI PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.98 1.0 I04 Diamond 0.98 SYNCHROTRON DIAMOND BEAMLINE I04 3300.863 CC-Hex3 4 syn polymer 18.015 water 74 nat water no yes (ACE)GEIAQSIKEIAKSIKEIAWSIKEIAQSIKG XGEIAQSIKEIAKSIKEIAWSIKEIAQSIKG A,B,C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 2.25 45.34 VAPOR DIFFUSION, SITTING DROP 5.5 0.2 M ammonium sulfate, 0.1 M sodium acetate, 10 % w/v PEG 2000 MME. 292 atom_site pdbx_audit_support pdbx_distant_solvent_atoms pdbx_validate_symm_contact pdbx_audit_support pdbx_struct_assembly pdbx_struct_assembly_gen pdbx_struct_assembly_prop struct repository Initial release Database references Advisory Atomic model Author supporting evidence Author supporting evidence Data collection Derived calculations Structure summary 1 0 2014-10-22 1 1 2014-11-05 2 0 2017-08-30 2 1 2017-09-13 2 2 2019-10-09 2 3 2019-12-11 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _pdbx_audit_support.funding_organization _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_audit_support.funding_organization _struct.title United Kingdom European Research Council 340764 United Kingdom Engineering and Physical Sciences Research Council EP/J001430/1 United Kingdom Biotechnology and Biological Sciences Research Council BB/J008990/1 N RCSB Y PDBE 2014-05-23 REL REL 1 A O HOH 118 8.11 1 A O HOH 119 8.14 1 A O HOH 120 8.19 1 A O HOH 121 8.98 1 C O HOH 112 7.59 1 C O HOH 113 7.64 1 C O HOH 114 7.75 1 C O HOH 115 8.10 1 C O HOH 116 8.21 1 D O HOH 114 8.18 HOH water 32360 synthetic construct sample 1 31 HOH 16 2 HOH HOH 101 A HOH 38 2 HOH HOH 102 A HOH 8 2 HOH HOH 103 A HOH 39 2 HOH HOH 104 A HOH 26 2 HOH HOH 105 A HOH 14 2 HOH HOH 106 A HOH 22 2 HOH HOH 107 A HOH 48 2 HOH HOH 108 A HOH 24 2 HOH HOH 109 A HOH 40 2 HOH HOH 110 A HOH 67 2 HOH HOH 111 A HOH 80 2 HOH HOH 112 A HOH 49 2 HOH HOH 113 A HOH 25 2 HOH HOH 114 A HOH 81 2 HOH HOH 115 A HOH 60 2 HOH HOH 116 A HOH 79 2 HOH HOH 117 A HOH 73 2 HOH HOH 118 A HOH 12 2 HOH HOH 119 A HOH 59 2 HOH HOH 120 A HOH 74 2 HOH HOH 121 A HOH 15 2 HOH HOH 101 B HOH 33 2 HOH HOH 102 B HOH 31 2 HOH HOH 103 B HOH 20 2 HOH HOH 104 B HOH 28 2 HOH HOH 105 B HOH 11 2 HOH HOH 106 B HOH 10 2 HOH HOH 107 B HOH 19 2 HOH HOH 108 B HOH 7 2 HOH HOH 109 B HOH 9 2 HOH HOH 110 B HOH 52 2 HOH HOH 111 B HOH 56 2 HOH HOH 112 B HOH 55 2 HOH HOH 113 B HOH 54 2 HOH HOH 114 B HOH 21 2 HOH HOH 115 B HOH 51 2 HOH HOH 116 B HOH 32 2 HOH HOH 117 B HOH 69 2 HOH HOH 118 B HOH 68 2 HOH HOH 119 B HOH 13 2 HOH HOH 120 B HOH 62 2 HOH HOH 121 B HOH 63 2 HOH HOH 122 B HOH 53 2 HOH HOH 123 B HOH 64 2 HOH HOH 101 C HOH 3 2 HOH HOH 102 C HOH 61 2 HOH HOH 103 C HOH 1 2 HOH HOH 104 C HOH 2 2 HOH HOH 105 C HOH 35 2 HOH HOH 106 C HOH 82 2 HOH HOH 107 C HOH 34 2 HOH HOH 108 C HOH 45 2 HOH HOH 109 C HOH 50 2 HOH HOH 110 C HOH 70 2 HOH HOH 111 C HOH 76 2 HOH HOH 112 C HOH 5 2 HOH HOH 113 C HOH 75 2 HOH HOH 114 C HOH 4 2 HOH HOH 115 C HOH 27 2 HOH HOH 116 C HOH 36 2 HOH HOH 101 D HOH 44 2 HOH HOH 102 D HOH 18 2 HOH HOH 103 D HOH 17 2 HOH HOH 104 D HOH 46 2 HOH HOH 105 D HOH 72 2 HOH HOH 106 D HOH 57 2 HOH HOH 107 D HOH 66 2 HOH HOH 108 D HOH 65 2 HOH HOH 109 D HOH 47 2 HOH HOH 110 D HOH 58 2 HOH HOH 111 D HOH 71 2 HOH HOH 112 D HOH 78 2 HOH HOH 113 D HOH 6 2 HOH HOH 114 D ACE 0 n 1 ACE 0 A GLY 1 n 2 GLY 1 A GLU 2 n 3 GLU 2 A ILE 3 n 4 ILE 3 A ALA 4 n 5 ALA 4 A GLN 5 n 6 GLN 5 A SER 6 n 7 SER 6 A ILE 7 n 8 ILE 7 A LYS 8 n 9 LYS 8 A GLU 9 n 10 GLU 9 A ILE 10 n 11 ILE 10 A ALA 11 n 12 ALA 11 A LYS 12 n 13 LYS 12 A SER 13 n 14 SER 13 A ILE 14 n 15 ILE 14 A LYS 15 n 16 LYS 15 A GLU 16 n 17 GLU 16 A ILE 17 n 18 ILE 17 A ALA 18 n 19 ALA 18 A TRP 19 n 20 TRP 19 A SER 20 n 21 SER 20 A ILE 21 n 22 ILE 21 A LYS 22 n 23 LYS 22 A GLU 23 n 24 GLU 23 A ILE 24 n 25 ILE 24 A ALA 25 n 26 ALA 25 A GLN 26 n 27 GLN 26 A SER 27 n 28 SER 27 A ILE 28 n 29 ILE 28 A LYS 29 n 30 LYS 29 A GLY 30 n 31 GLY 30 A ACE 0 n 1 ACE 0 B GLY 1 n 2 GLY 1 B GLU 2 n 3 GLU 2 B ILE 3 n 4 ILE 3 B ALA 4 n 5 ALA 4 B GLN 5 n 6 GLN 5 B SER 6 n 7 SER 6 B ILE 7 n 8 ILE 7 B LYS 8 n 9 LYS 8 B GLU 9 n 10 GLU 9 B ILE 10 n 11 ILE 10 B ALA 11 n 12 ALA 11 B LYS 12 n 13 LYS 12 B SER 13 n 14 SER 13 B ILE 14 n 15 ILE 14 B LYS 15 n 16 LYS 15 B GLU 16 n 17 GLU 16 B ILE 17 n 18 ILE 17 B ALA 18 n 19 ALA 18 B TRP 19 n 20 TRP 19 B SER 20 n 21 SER 20 B ILE 21 n 22 ILE 21 B LYS 22 n 23 LYS 22 B GLU 23 n 24 GLU 23 B ILE 24 n 25 ILE 24 B ALA 25 n 26 ALA 25 B GLN 26 n 27 GLN 26 B SER 27 n 28 SER 27 B ILE 28 n 29 ILE 28 B LYS 29 n 30 LYS 29 B GLY 30 n 31 GLY 30 B ACE 0 n 1 ACE 0 C GLY 1 n 2 GLY 1 C GLU 2 n 3 GLU 2 C ILE 3 n 4 ILE 3 C ALA 4 n 5 ALA 4 C GLN 5 n 6 GLN 5 C SER 6 n 7 SER 6 C ILE 7 n 8 ILE 7 C LYS 8 n 9 LYS 8 C GLU 9 n 10 GLU 9 C ILE 10 n 11 ILE 10 C ALA 11 n 12 ALA 11 C LYS 12 n 13 LYS 12 C SER 13 n 14 SER 13 C ILE 14 n 15 ILE 14 C LYS 15 n 16 LYS 15 C GLU 16 n 17 GLU 16 C ILE 17 n 18 ILE 17 C ALA 18 n 19 ALA 18 C TRP 19 n 20 TRP 19 C SER 20 n 21 SER 20 C ILE 21 n 22 ILE 21 C LYS 22 n 23 LYS 22 C GLU 23 n 24 GLU 23 C ILE 24 n 25 ILE 24 C ALA 25 n 26 ALA 25 C GLN 26 n 27 GLN 26 C SER 27 n 28 SER 27 C ILE 28 n 29 ILE 28 C LYS 29 n 30 LYS 29 C n 31 30 C ACE 0 n 1 ACE 0 D GLY 1 n 2 GLY 1 D GLU 2 n 3 GLU 2 D ILE 3 n 4 ILE 3 D ALA 4 n 5 ALA 4 D GLN 5 n 6 GLN 5 D SER 6 n 7 SER 6 D ILE 7 n 8 ILE 7 D LYS 8 n 9 LYS 8 D GLU 9 n 10 GLU 9 D ILE 10 n 11 ILE 10 D ALA 11 n 12 ALA 11 D LYS 12 n 13 LYS 12 D SER 13 n 14 SER 13 D ILE 14 n 15 ILE 14 D LYS 15 n 16 LYS 15 D GLU 16 n 17 GLU 16 D ILE 17 n 18 ILE 17 D ALA 18 n 19 ALA 18 D TRP 19 n 20 TRP 19 D SER 20 n 21 SER 20 D ILE 21 n 22 ILE 21 D LYS 22 n 23 LYS 22 D GLU 23 n 24 GLU 23 D ILE 24 n 25 ILE 24 D ALA 25 n 26 ALA 25 D GLN 26 n 27 GLN 26 D SER 27 n 28 SER 27 D ILE 28 n 29 ILE 28 D LYS 29 n 30 LYS 29 D GLY 30 n 31 GLY 30 D author_and_software_defined_assembly PISA 6 hexameric author_and_software_defined_assembly PISA 6 hexameric 8440 -88 10400 7920 -85 10090 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5_555 z,x,y crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 6_445 z-1/2,-x-1/2,-y crystal symmetry operation -44.6050000000 -44.6050000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 9_555 y,z,x crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 1.0000000000 0.0000000000 0.0000000000 12_455 -y-1/2,-z,x+1/2 crystal symmetry operation -44.6050000000 0.0000000000 44.6050000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 16_555 x,-y,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 44.6050000000 0.0000000000 0.0000000000 -1.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 20_555 -z+1/2,x,-y crystal symmetry operation 44.6050000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 1.0000000000 0.0000000000 0.0000000000 24_555 -y,-z+1/2,x crystal symmetry operation 0.0000000000 44.6050000000 0.0000000000 1 A HOH 118 E HOH 1 A HOH 119 E HOH 1 A HOH 120 E HOH 1 A HOH 121 E HOH 1 B HOH 102 F HOH 1 C HOH 113 G HOH 1 C HOH 114 G HOH 1 C HOH 115 G HOH 1 C HOH 116 G HOH 1 D HOH 114 H HOH 1 A NZ LYS 15 A NZ LYS 16 1 Y 1 C CD LYS 12 C CD LYS 13 1 Y 1 C CE LYS 12 C CE LYS 13 1 Y 1 C NZ LYS 12 C NZ LYS 13 1 Y 1 C CG LYS 15 C CG LYS 16 1 Y 1 C CD LYS 15 C CD LYS 16 1 Y 1 C CE LYS 15 C CE LYS 16 1 Y 1 C NZ LYS 15 C NZ LYS 16 1 Y 1 C CG TRP 19 C CG TRP 20 1 Y 1 C CE2 TRP 19 C CE2 TRP 20 1 Y 1 C CE3 TRP 19 C CE3 TRP 20 1 Y 1 C CZ2 TRP 19 C CZ2 TRP 20 1 Y 1 C CZ3 TRP 19 C CZ3 TRP 20 1 Y 1 C CH2 TRP 19 C CH2 TRP 20 1 Y 1 C CG GLN 26 C CG GLN 27 1 Y 1 C CD GLN 26 C CD GLN 27 1 Y 1 C OE1 GLN 26 C OE1 GLN 27 1 Y 1 C NE2 GLN 26 C NE2 GLN 27 1 Y 1 C CB LYS 29 C CB LYS 30 1 Y 1 C CG LYS 29 C CG LYS 30 1 Y 1 C CD LYS 29 C CD LYS 30 1 Y 1 C CE LYS 29 C CE LYS 30 1 Y 1 C NZ LYS 29 C NZ LYS 30 1 Y 1 C GLY 30 C GLY 31 1 Y 1 D D O O ALA HOH 4 101 2.06 1 D D O O ILE HOH 21 102 2.13 1 -31.09 1.70 123.20 92.11 A A A O C N ACE ACE GLY 0 0 1 Y 1 -33.86 2.10 122.30 88.44 A A A C N CA ACE GLY GLY 0 1 1 Y 1 -21.37 2.10 122.30 100.93 B B B C N CA ACE GLY GLY 0 1 1 Y 1 -13.17 1.70 123.20 110.03 C C C O C N ACE ACE GLY 0 0 1 Y 1 -19.79 2.10 122.30 102.51 C C C C N CA ACE GLY GLY 0 1 1 Y 1 -13.27 2.10 122.30 109.03 D D D C N CA ACE GLY GLY 0 1 1 Y 1 C D OG O SER HOH 20 102 2.14 1_555 6_445 1 C D O O HOH HOH 103 109 2.14 1_555 6_445 0.2765 0.2411 0.2428 2.052 44.6 348 7557 4.61 99.88 0.28 1 FREE R-VALUE 1.37 MOLECULAR REPLACEMENT 32.97 0.90 1.11 ML FLAT BULK SOLVENT MODEL 2.052 44.6 74 975 0 0 901 0.008 928 1.095 1219 15.362 355 0.090 144 0.003 143 0.3209 0.2335 2.5853 160 3567 100.00 0.2621 0.2440 44.6155 188 3642 100.00 2.05 44.61 4PNB 7572 1 14.5 13.7 100 0.701 2.05 2.11 3.9 1 13.0 100 refinement PHENIX (phenix.refine: 1.8.2_1309) data reduction iMOSFLM data scaling Aimless phasing PHASER CC-Hex3 A de novo designed hexameric coiled coil CC-Hex3. 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N A GLY 1 A GLY 2 HELX_P A LYS 29 A LYS 30 1 AA1 29 B GLU 2 B GLU 3 HELX_P B LYS 29 B LYS 30 1 AA2 28 C GLY 1 C GLY 2 HELX_P C LYS 29 C LYS 30 1 AA3 29 D GLY 1 D GLY 2 HELX_P D LYS 29 D LYS 30 1 AA4 29 covale 1.331 both A ACE 0 A C ACE 1 1_555 A GLY 1 A N GLY 2 1_555 covale 1.332 both B ACE 0 B C ACE 1 1_555 B GLY 1 B N GLY 2 1_555 covale 1.337 both C ACE 0 C C ACE 1 1_555 C GLY 1 C N GLY 2 1_555 covale 1.329 both D ACE 0 D C ACE 1 1_555 D GLY 1 D N GLY 2 1_555 DE NOVO PROTEIN De Novo Protein, Artificially designed - often synthetic, Alpha-helical barrel, coiled coil, protein design, peptide . 4PNB PDB 1 1 4PNB 0 30 4PNB 0 30 4PNB A 1 1 31 0 30 4PNB 0 30 4PNB B 1 1 31 0 30 4PNB 0 30 4PNB C 1 1 31 0 30 4PNB 0 30 4PNB D 1 1 31 199 I 21 3