0.028491 -0.006026 -0.005544 0.000000 0.016826 -0.005626 0.000000 0.000000 0.017699 0.00000 0.00000 0.00000 Nanyes, D.R. Junco, S.E. Taylor, A.B. Robinson, A.K. Patterson, N.L. Shivarajpur, A. Halloran, J. Hale, S.M. Kaur, Y. Hart, P.J. Kim, C.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 5 69.43 75.88 78.06 35.099 60.746 61.431 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N O N 90 N C N 91 N O N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N N N 99 S C N 100 N C N 101 N O N 102 N C N 103 N C N 104 N C N 105 N O N 106 N N N 107 N O N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N N N 119 S C N 120 N C N 121 N O N 122 N C N 123 N C N 124 N C N 125 N O N 126 N O N 127 N O N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 N C N 139 N C N 140 N O N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 N C Y 152 N C Y 153 N N Y 154 N C Y 155 N C Y 156 N N N 157 N O N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N O N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 S C N 176 N C N 177 N C N 178 N C N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N C N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N N N 216 S C N 217 N C N 218 N O N 219 N C N 220 N C N 221 N C N 222 N C N 223 N N N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N C N 246 N S N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C Y 269 N C Y 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N N N 284 S C N 285 N C N 286 N O N 287 N C N 288 N C N 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N N N 301 S C N 302 N C N 303 N O N 304 N C N 305 N O N 306 N O N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 R C N 319 N O N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N N Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N C N 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing Y 149 N sing Y 150 N doub Y 151 N doub N 152 N sing Y 153 N sing N 154 N sing Y 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing Y 257 N doub Y 258 N sing Y 259 N sing N 260 N sing Y 261 N doub N 262 N sing Y 263 N doub N 264 N sing Y 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub Y 331 N sing Y 332 N sing N 333 N sing Y 334 N sing Y 335 N doub N 336 N sing Y 337 N doub N 338 N sing Y 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing US Proteins PSFGEY 0867 0887-3585 82 2823 2830 10.1002/prot.24645 25044168 Multiple polymer architectures of human polyhomeotic homolog 3 sterile alpha motif. 2014 10.2210/pdb4pzn/pdb pdb_00004pzn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2012-10-08 NOIR-1 SINGLE WAVELENGTH M x-ray 1 1.0 1.0 4.2.2 ALS 1.0 SYNCHROTRON ALS BEAMLINE 4.2.2 9465.790 Polyhomeotic-like protein 3 sterile alpha motif L971E 5 man polymer 62.068 1,2-ETHANEDIOL 5 syn non-polymer 18.015 water 40 nat water Early development regulatory protein 3, Homolog of polyhomeotic 3, hPH3 no no MEKTRTEPSIWTVDDVWAFIHSLPGCQDIADEFRAQEIDGQALLLLKEDHLMSAMNIKLGPAEKICARINSLKESRHHHH HH MEKTRTEPSIWTVDDVWAFIHSLPGCQDIADEFRAQEIDGQALLLLKEDHLMSAMNIKLGPAEKICARINSLKESRHHHH HH A,B,C,D,E polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human sample EDR3, PH3, PHC3 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) pLysS plasmid pET-3c 1 2.49 50.61 VAPOR DIFFUSION, HANGING DROP 7.5 55% ethylene glycol, 100 mM tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ref_seq_dif struct_site repository Initial release Database references Database references Data collection Database references Derived calculations Refinement description 1 0 2014-07-30 1 1 2014-08-20 1 2 2014-10-15 1 3 2023-09-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2014-03-31 REL REL EDO 1,2-ETHANEDIOL HOH water 1KW4 PDB experimental model EDO 3 2 EDO EDO 1001 A EDO 4 2 EDO EDO 1002 A EDO 2 2 EDO EDO 1001 B EDO 1 2 EDO EDO 1001 C EDO 5 2 EDO EDO 1002 C HOH 2 3 HOH HOH 1101 A HOH 3 3 HOH HOH 1102 A HOH 15 3 HOH HOH 1103 A HOH 21 3 HOH HOH 1104 A HOH 24 3 HOH HOH 1105 A HOH 26 3 HOH HOH 1106 A HOH 32 3 HOH HOH 1107 A HOH 35 3 HOH HOH 1108 A HOH 37 3 HOH HOH 1109 A HOH 38 3 HOH HOH 1110 A HOH 39 3 HOH HOH 1111 A HOH 5 3 HOH HOH 1101 B HOH 9 3 HOH HOH 1102 B HOH 12 3 HOH HOH 1103 B HOH 13 3 HOH HOH 1104 B HOH 17 3 HOH HOH 1105 B HOH 18 3 HOH HOH 1106 B HOH 19 3 HOH HOH 1107 B HOH 22 3 HOH HOH 1108 B HOH 29 3 HOH HOH 1109 B HOH 30 3 HOH HOH 1110 B HOH 31 3 HOH HOH 1111 B HOH 4 3 HOH HOH 1101 C HOH 7 3 HOH HOH 1102 C HOH 8 3 HOH HOH 1103 C HOH 11 3 HOH HOH 1104 C HOH 14 3 HOH HOH 1105 C HOH 16 3 HOH HOH 1106 C HOH 20 3 HOH HOH 1107 C HOH 23 3 HOH HOH 1108 C HOH 27 3 HOH HOH 1109 C HOH 33 3 HOH HOH 1110 C HOH 34 3 HOH HOH 1111 C HOH 40 3 HOH HOH 1112 C HOH 1 3 HOH HOH 1001 D HOH 6 3 HOH HOH 1002 D HOH 10 3 HOH HOH 1003 D HOH 25 3 HOH HOH 1004 D HOH 28 3 HOH HOH 1005 D HOH 36 3 HOH HOH 1006 D n 1 909 A n 2 910 A n 3 911 A n 4 912 A n 5 913 A THR 914 n 6 THR 914 A GLU 915 n 7 GLU 915 A PRO 916 n 8 PRO 916 A SER 917 n 9 SER 917 A ILE 918 n 10 ILE 918 A TRP 919 n 11 TRP 919 A THR 920 n 12 THR 920 A VAL 921 n 13 VAL 921 A ASP 922 n 14 ASP 922 A ASP 923 n 15 ASP 923 A VAL 924 n 16 VAL 924 A TRP 925 n 17 TRP 925 A ALA 926 n 18 ALA 926 A PHE 927 n 19 PHE 927 A ILE 928 n 20 ILE 928 A HIS 929 n 21 HIS 929 A SER 930 n 22 SER 930 A LEU 931 n 23 LEU 931 A PRO 932 n 24 PRO 932 A GLY 933 n 25 GLY 933 A CYS 934 n 26 CYS 934 A GLN 935 n 27 GLN 935 A ASP 936 n 28 ASP 936 A ILE 937 n 29 ILE 937 A ALA 938 n 30 ALA 938 A ASP 939 n 31 ASP 939 A GLU 940 n 32 GLU 940 A PHE 941 n 33 PHE 941 A ARG 942 n 34 ARG 942 A ALA 943 n 35 ALA 943 A GLN 944 n 36 GLN 944 A GLU 945 n 37 GLU 945 A ILE 946 n 38 ILE 946 A ASP 947 n 39 ASP 947 A GLY 948 n 40 GLY 948 A GLN 949 n 41 GLN 949 A ALA 950 n 42 ALA 950 A LEU 951 n 43 LEU 951 A LEU 952 n 44 LEU 952 A LEU 953 n 45 LEU 953 A LEU 954 n 46 LEU 954 A LYS 955 n 47 LYS 955 A GLU 956 n 48 GLU 956 A ASP 957 n 49 ASP 957 A HIS 958 n 50 HIS 958 A LEU 959 n 51 LEU 959 A MET 960 n 52 MET 960 A SER 961 n 53 SER 961 A ALA 962 n 54 ALA 962 A MET 963 n 55 MET 963 A ASN 964 n 56 ASN 964 A ILE 965 n 57 ILE 965 A LYS 966 n 58 LYS 966 A LEU 967 n 59 LEU 967 A GLY 968 n 60 GLY 968 A PRO 969 n 61 PRO 969 A ALA 970 n 62 ALA 970 A GLU 971 n 63 GLU 971 A LYS 972 n 64 LYS 972 A ILE 973 n 65 ILE 973 A CYS 974 n 66 CYS 974 A ALA 975 n 67 ALA 975 A ARG 976 n 68 ARG 976 A ILE 977 n 69 ILE 977 A ASN 978 n 70 ASN 978 A SER 979 n 71 SER 979 A LEU 980 n 72 LEU 980 A LYS 981 n 73 LYS 981 A GLU 982 n 74 GLU 982 A SER 983 n 75 SER 983 A n 76 984 A n 77 985 A n 78 986 A n 79 987 A n 80 988 A n 81 989 A n 82 990 A n 1 909 B n 2 910 B n 3 911 B n 4 912 B n 5 913 B THR 914 n 6 THR 914 B GLU 915 n 7 GLU 915 B PRO 916 n 8 PRO 916 B SER 917 n 9 SER 917 B ILE 918 n 10 ILE 918 B TRP 919 n 11 TRP 919 B THR 920 n 12 THR 920 B VAL 921 n 13 VAL 921 B ASP 922 n 14 ASP 922 B ASP 923 n 15 ASP 923 B VAL 924 n 16 VAL 924 B TRP 925 n 17 TRP 925 B ALA 926 n 18 ALA 926 B PHE 927 n 19 PHE 927 B ILE 928 n 20 ILE 928 B HIS 929 n 21 HIS 929 B SER 930 n 22 SER 930 B LEU 931 n 23 LEU 931 B PRO 932 n 24 PRO 932 B GLY 933 n 25 GLY 933 B CYS 934 n 26 CYS 934 B GLN 935 n 27 GLN 935 B ASP 936 n 28 ASP 936 B ILE 937 n 29 ILE 937 B ALA 938 n 30 ALA 938 B ASP 939 n 31 ASP 939 B GLU 940 n 32 GLU 940 B PHE 941 n 33 PHE 941 B ARG 942 n 34 ARG 942 B ALA 943 n 35 ALA 943 B GLN 944 n 36 GLN 944 B GLU 945 n 37 GLU 945 B ILE 946 n 38 ILE 946 B ASP 947 n 39 ASP 947 B GLY 948 n 40 GLY 948 B GLN 949 n 41 GLN 949 B ALA 950 n 42 ALA 950 B LEU 951 n 43 LEU 951 B LEU 952 n 44 LEU 952 B LEU 953 n 45 LEU 953 B LEU 954 n 46 LEU 954 B LYS 955 n 47 LYS 955 B GLU 956 n 48 GLU 956 B ASP 957 n 49 ASP 957 B HIS 958 n 50 HIS 958 B LEU 959 n 51 LEU 959 B MET 960 n 52 MET 960 B SER 961 n 53 SER 961 B ALA 962 n 54 ALA 962 B MET 963 n 55 MET 963 B ASN 964 n 56 ASN 964 B ILE 965 n 57 ILE 965 B LYS 966 n 58 LYS 966 B LEU 967 n 59 LEU 967 B GLY 968 n 60 GLY 968 B PRO 969 n 61 PRO 969 B ALA 970 n 62 ALA 970 B GLU 971 n 63 GLU 971 B LYS 972 n 64 LYS 972 B ILE 973 n 65 ILE 973 B CYS 974 n 66 CYS 974 B ALA 975 n 67 ALA 975 B ARG 976 n 68 ARG 976 B ILE 977 n 69 ILE 977 B ASN 978 n 70 ASN 978 B SER 979 n 71 SER 979 B LEU 980 n 72 LEU 980 B LYS 981 n 73 LYS 981 B GLU 982 n 74 GLU 982 B n 75 983 B n 76 984 B n 77 985 B n 78 986 B n 79 987 B n 80 988 B n 81 989 B n 82 990 B n 1 909 C n 2 910 C n 3 911 C n 4 912 C ARG 913 n 5 ARG 913 C THR 914 n 6 THR 914 C GLU 915 n 7 GLU 915 C PRO 916 n 8 PRO 916 C SER 917 n 9 SER 917 C ILE 918 n 10 ILE 918 C TRP 919 n 11 TRP 919 C THR 920 n 12 THR 920 C VAL 921 n 13 VAL 921 C ASP 922 n 14 ASP 922 C ASP 923 n 15 ASP 923 C VAL 924 n 16 VAL 924 C TRP 925 n 17 TRP 925 C ALA 926 n 18 ALA 926 C PHE 927 n 19 PHE 927 C ILE 928 n 20 ILE 928 C HIS 929 n 21 HIS 929 C SER 930 n 22 SER 930 C LEU 931 n 23 LEU 931 C PRO 932 n 24 PRO 932 C GLY 933 n 25 GLY 933 C CYS 934 n 26 CYS 934 C GLN 935 n 27 GLN 935 C ASP 936 n 28 ASP 936 C ILE 937 n 29 ILE 937 C ALA 938 n 30 ALA 938 C ASP 939 n 31 ASP 939 C GLU 940 n 32 GLU 940 C PHE 941 n 33 PHE 941 C ARG 942 n 34 ARG 942 C ALA 943 n 35 ALA 943 C GLN 944 n 36 GLN 944 C GLU 945 n 37 GLU 945 C ILE 946 n 38 ILE 946 C ASP 947 n 39 ASP 947 C GLY 948 n 40 GLY 948 C GLN 949 n 41 GLN 949 C ALA 950 n 42 ALA 950 C LEU 951 n 43 LEU 951 C LEU 952 n 44 LEU 952 C LEU 953 n 45 LEU 953 C LEU 954 n 46 LEU 954 C LYS 955 n 47 LYS 955 C GLU 956 n 48 GLU 956 C ASP 957 n 49 ASP 957 C HIS 958 n 50 HIS 958 C LEU 959 n 51 LEU 959 C MET 960 n 52 MET 960 C SER 961 n 53 SER 961 C ALA 962 n 54 ALA 962 C MET 963 n 55 MET 963 C ASN 964 n 56 ASN 964 C ILE 965 n 57 ILE 965 C LYS 966 n 58 LYS 966 C LEU 967 n 59 LEU 967 C GLY 968 n 60 GLY 968 C PRO 969 n 61 PRO 969 C ALA 970 n 62 ALA 970 C GLU 971 n 63 GLU 971 C LYS 972 n 64 LYS 972 C ILE 973 n 65 ILE 973 C CYS 974 n 66 CYS 974 C ALA 975 n 67 ALA 975 C ARG 976 n 68 ARG 976 C ILE 977 n 69 ILE 977 C ASN 978 n 70 ASN 978 C SER 979 n 71 SER 979 C LEU 980 n 72 LEU 980 C LYS 981 n 73 LYS 981 C GLU 982 n 74 GLU 982 C n 75 983 C n 76 984 C n 77 985 C n 78 986 C n 79 987 C n 80 988 C n 81 989 C n 82 990 C n 1 909 D n 2 910 D n 3 911 D n 4 912 D n 5 913 D THR 914 n 6 THR 914 D GLU 915 n 7 GLU 915 D PRO 916 n 8 PRO 916 D SER 917 n 9 SER 917 D ILE 918 n 10 ILE 918 D TRP 919 n 11 TRP 919 D THR 920 n 12 THR 920 D VAL 921 n 13 VAL 921 D ASP 922 n 14 ASP 922 D ASP 923 n 15 ASP 923 D VAL 924 n 16 VAL 924 D TRP 925 n 17 TRP 925 D ALA 926 n 18 ALA 926 D PHE 927 n 19 PHE 927 D ILE 928 n 20 ILE 928 D HIS 929 n 21 HIS 929 D SER 930 n 22 SER 930 D LEU 931 n 23 LEU 931 D PRO 932 n 24 PRO 932 D GLY 933 n 25 GLY 933 D CYS 934 n 26 CYS 934 D GLN 935 n 27 GLN 935 D ASP 936 n 28 ASP 936 D ILE 937 n 29 ILE 937 D ALA 938 n 30 ALA 938 D ASP 939 n 31 ASP 939 D GLU 940 n 32 GLU 940 D PHE 941 n 33 PHE 941 D ARG 942 n 34 ARG 942 D ALA 943 n 35 ALA 943 D GLN 944 n 36 GLN 944 D GLU 945 n 37 GLU 945 D ILE 946 n 38 ILE 946 D ASP 947 n 39 ASP 947 D GLY 948 n 40 GLY 948 D GLN 949 n 41 GLN 949 D ALA 950 n 42 ALA 950 D LEU 951 n 43 LEU 951 D LEU 952 n 44 LEU 952 D LEU 953 n 45 LEU 953 D LEU 954 n 46 LEU 954 D LYS 955 n 47 LYS 955 D GLU 956 n 48 GLU 956 D ASP 957 n 49 ASP 957 D HIS 958 n 50 HIS 958 D LEU 959 n 51 LEU 959 D MET 960 n 52 MET 960 D SER 961 n 53 SER 961 D ALA 962 n 54 ALA 962 D MET 963 n 55 MET 963 D ASN 964 n 56 ASN 964 D ILE 965 n 57 ILE 965 D LYS 966 n 58 LYS 966 D LEU 967 n 59 LEU 967 D GLY 968 n 60 GLY 968 D PRO 969 n 61 PRO 969 D ALA 970 n 62 ALA 970 D GLU 971 n 63 GLU 971 D LYS 972 n 64 LYS 972 D ILE 973 n 65 ILE 973 D CYS 974 n 66 CYS 974 D ALA 975 n 67 ALA 975 D ARG 976 n 68 ARG 976 D ILE 977 n 69 ILE 977 D ASN 978 n 70 ASN 978 D SER 979 n 71 SER 979 D LEU 980 n 72 LEU 980 D LYS 981 n 73 LYS 981 D GLU 982 n 74 GLU 982 D n 75 983 D n 76 984 D n 77 985 D n 78 986 D n 79 987 D n 80 988 D n 81 989 D n 82 990 D n 1 909 E n 2 910 E n 3 911 E n 4 912 E n 5 913 E n 6 914 E GLU 915 n 7 GLU 915 E PRO 916 n 8 PRO 916 E SER 917 n 9 SER 917 E ILE 918 n 10 ILE 918 E TRP 919 n 11 TRP 919 E THR 920 n 12 THR 920 E VAL 921 n 13 VAL 921 E ASP 922 n 14 ASP 922 E ASP 923 n 15 ASP 923 E VAL 924 n 16 VAL 924 E TRP 925 n 17 TRP 925 E ALA 926 n 18 ALA 926 E PHE 927 n 19 PHE 927 E ILE 928 n 20 ILE 928 E HIS 929 n 21 HIS 929 E SER 930 n 22 SER 930 E LEU 931 n 23 LEU 931 E PRO 932 n 24 PRO 932 E GLY 933 n 25 GLY 933 E CYS 934 n 26 CYS 934 E GLN 935 n 27 GLN 935 E ASP 936 n 28 ASP 936 E ILE 937 n 29 ILE 937 E ALA 938 n 30 ALA 938 E ASP 939 n 31 ASP 939 E GLU 940 n 32 GLU 940 E PHE 941 n 33 PHE 941 E ARG 942 n 34 ARG 942 E ALA 943 n 35 ALA 943 E GLN 944 n 36 GLN 944 E GLU 945 n 37 GLU 945 E ILE 946 n 38 ILE 946 E ASP 947 n 39 ASP 947 E GLY 948 n 40 GLY 948 E GLN 949 n 41 GLN 949 E ALA 950 n 42 ALA 950 E LEU 951 n 43 LEU 951 E LEU 952 n 44 LEU 952 E LEU 953 n 45 LEU 953 E LEU 954 n 46 LEU 954 E LYS 955 n 47 LYS 955 E GLU 956 n 48 GLU 956 E ASP 957 n 49 ASP 957 E HIS 958 n 50 HIS 958 E LEU 959 n 51 LEU 959 E MET 960 n 52 MET 960 E SER 961 n 53 SER 961 E ALA 962 n 54 ALA 962 E MET 963 n 55 MET 963 E ASN 964 n 56 ASN 964 E ILE 965 n 57 ILE 965 E LYS 966 n 58 LYS 966 E LEU 967 n 59 LEU 967 E GLY 968 n 60 GLY 968 E PRO 969 n 61 PRO 969 E ALA 970 n 62 ALA 970 E GLU 971 n 63 GLU 971 E LYS 972 n 64 LYS 972 E ILE 973 n 65 ILE 973 E CYS 974 n 66 CYS 974 E ALA 975 n 67 ALA 975 E ARG 976 n 68 ARG 976 E ILE 977 n 69 ILE 977 E ASN 978 n 70 ASN 978 E SER 979 n 71 SER 979 E LEU 980 n 72 LEU 980 E LYS 981 n 73 LYS 981 E n 74 982 E n 75 983 E n 76 984 E n 77 985 E n 78 986 E n 79 987 E n 80 988 E n 81 989 E n 82 990 E author_defined_assembly 5 pentameric software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 1 monomeric software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A MET 909 A MET 1 1 Y 1 A GLU 910 A GLU 2 1 Y 1 A LYS 911 A LYS 3 1 Y 1 A THR 912 A THR 4 1 Y 1 A ARG 913 A ARG 5 1 Y 1 A ARG 984 A ARG 76 1 Y 1 A HIS 985 A HIS 77 1 Y 1 A HIS 986 A HIS 78 1 Y 1 A HIS 987 A HIS 79 1 Y 1 A HIS 988 A HIS 80 1 Y 1 A HIS 989 A HIS 81 1 Y 1 A HIS 990 A HIS 82 1 Y 1 B MET 909 B MET 1 1 Y 1 B GLU 910 B GLU 2 1 Y 1 B LYS 911 B LYS 3 1 Y 1 B THR 912 B THR 4 1 Y 1 B ARG 913 B ARG 5 1 Y 1 B SER 983 B SER 75 1 Y 1 B ARG 984 B ARG 76 1 Y 1 B HIS 985 B HIS 77 1 Y 1 B HIS 986 B HIS 78 1 Y 1 B HIS 987 B HIS 79 1 Y 1 B HIS 988 B HIS 80 1 Y 1 B HIS 989 B HIS 81 1 Y 1 B HIS 990 B HIS 82 1 Y 1 C MET 909 C MET 1 1 Y 1 C GLU 910 C GLU 2 1 Y 1 C LYS 911 C LYS 3 1 Y 1 C THR 912 C THR 4 1 Y 1 C SER 983 C SER 75 1 Y 1 C ARG 984 C ARG 76 1 Y 1 C HIS 985 C HIS 77 1 Y 1 C HIS 986 C HIS 78 1 Y 1 C HIS 987 C HIS 79 1 Y 1 C HIS 988 C HIS 80 1 Y 1 C HIS 989 C HIS 81 1 Y 1 C HIS 990 C HIS 82 1 Y 1 D MET 909 D MET 1 1 Y 1 D GLU 910 D GLU 2 1 Y 1 D LYS 911 D LYS 3 1 Y 1 D THR 912 D THR 4 1 Y 1 D ARG 913 D ARG 5 1 Y 1 D SER 983 D SER 75 1 Y 1 D ARG 984 D ARG 76 1 Y 1 D HIS 985 D HIS 77 1 Y 1 D HIS 986 D HIS 78 1 Y 1 D HIS 987 D HIS 79 1 Y 1 D HIS 988 D HIS 80 1 Y 1 D HIS 989 D HIS 81 1 Y 1 D HIS 990 D HIS 82 1 Y 1 E MET 909 E MET 1 1 Y 1 E GLU 910 E GLU 2 1 Y 1 E LYS 911 E LYS 3 1 Y 1 E THR 912 E THR 4 1 Y 1 E ARG 913 E ARG 5 1 Y 1 E THR 914 E THR 6 1 Y 1 E GLU 982 E GLU 74 1 Y 1 E SER 983 E SER 75 1 Y 1 E ARG 984 E ARG 76 1 Y 1 E HIS 985 E HIS 77 1 Y 1 E HIS 986 E HIS 78 1 Y 1 E HIS 987 E HIS 79 1 Y 1 E HIS 988 E HIS 80 1 Y 1 E HIS 989 E HIS 81 1 Y 1 E HIS 990 E HIS 82 1 Y 1 A LYS 981 -55.42 -5.17 57.6 0.2495 0.2050 0.2095 2.300 19.683 1998 19816 10.08 97.83 0.28 random 1 Isotropic THROUGHOUT 1.97 MOLECULAR REPLACEMENT 29.52 0.90 1.11 1KW4 ML FLAT BULK SOLVENT MODEL 2.300 19.683 40 2766 20 0 2706 0.009 2771 1.237 3740 14.685 1027 0.059 424 0.008 480 0.3170 0.2587 2.3574 132 1265 96.00 0.3107 0.2598 2.4211 145 1254 98.00 0.3140 0.2552 2.4922 139 1276 97.00 0.2950 0.2515 2.5724 147 1257 98.00 0.3045 0.2262 2.6642 143 1280 97.00 0.2864 0.2405 2.7706 142 1272 98.00 0.3019 0.2456 2.8963 141 1288 98.00 0.2825 0.2379 3.0485 143 1264 98.00 0.2990 0.2326 3.2387 137 1291 98.00 0.2703 0.2266 3.4875 143 1269 98.00 0.2392 0.2082 3.8361 140 1278 98.00 0.2053 0.1726 4.3858 150 1278 98.00 0.2361 0.1910 5.5055 149 1262 99.00 0.2006 0.1612 19.6837 147 1284 98.00 44.5 2.30 19.68 4PZN 19834 0.029 1 11.4 2.0 97.8 2.30 2.42 3.1 2873 0.253 1 2.0 97.2 phasing PHASER refinement PHENIX (phenix.refine: 1.8.4_1496) data reduction XDS data scaling XDS Crystal structure of PHC3 SAM L971E 1 N N 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N A GLU 915 A GLU 7 HELX_P A TRP 919 A TRP 11 5 1 5 A THR 920 A THR 12 HELX_P A SER 930 A SER 22 1 2 11 A ASP 936 A ASP 28 HELX_P A GLN 944 A GLN 36 1 3 9 A ASP 947 A ASP 39 HELX_P A LEU 952 A LEU 44 1 4 6 A LYS 955 A LYS 47 HELX_P A ASN 964 A ASN 56 1 5 10 A LYS 966 A LYS 58 HELX_P A LYS 981 A LYS 73 1 6 16 B GLU 915 B GLU 7 HELX_P B TRP 919 B TRP 11 5 7 5 B THR 920 B THR 12 HELX_P B SER 930 B SER 22 1 8 11 B ASP 936 B ASP 28 HELX_P B GLN 944 B GLN 36 1 9 9 B ASP 947 B ASP 39 HELX_P B LEU 952 B LEU 44 1 10 6 B LYS 955 B LYS 47 HELX_P B ALA 962 B ALA 54 1 11 8 B LYS 966 B LYS 58 HELX_P B LYS 981 B LYS 73 1 12 16 C GLU 915 C GLU 7 HELX_P C TRP 919 C TRP 11 5 13 5 C THR 920 C THR 12 HELX_P C SER 930 C SER 22 1 14 11 C ASP 936 C ASP 28 HELX_P C GLN 944 C GLN 36 1 15 9 C ASP 947 C ASP 39 HELX_P C LEU 952 C LEU 44 1 16 6 C LYS 955 C LYS 47 HELX_P C ASN 964 C ASN 56 1 17 10 C LYS 966 C LYS 58 HELX_P C GLU 982 C GLU 74 1 18 17 D GLU 915 D GLU 7 HELX_P D TRP 919 D TRP 11 5 19 5 D THR 920 D THR 12 HELX_P D SER 930 D SER 22 1 20 11 D ASP 936 D ASP 28 HELX_P D GLN 944 D GLN 36 1 21 9 D ASP 947 D ASP 39 HELX_P D LEU 954 D LEU 46 1 22 8 D LYS 955 D LYS 47 HELX_P D ASN 964 D ASN 56 1 23 10 D LYS 966 D LYS 58 HELX_P D GLU 982 D GLU 74 1 24 17 E GLU 915 E GLU 7 HELX_P E TRP 919 E TRP 11 5 25 5 E THR 920 E THR 12 HELX_P E SER 930 E SER 22 1 26 11 E ILE 937 E ILE 29 HELX_P E GLN 944 E GLN 36 1 27 8 E ASP 947 E ASP 39 HELX_P E LEU 952 E LEU 44 1 28 6 E LYS 955 E LYS 47 HELX_P E MET 963 E MET 55 1 29 9 E LYS 966 E LYS 58 HELX_P E LYS 981 E LYS 73 1 30 16 DNA BINDING PROTEIN SAM domain, Polycomb group, polymer, chromatin, DNA BINDING PROTEIN PHC3_HUMAN UNP 1 914 Q8NDX5 TEPSIWTVDDVWAFIHSLPGCQDIADEFRAQEIDGQALLLLKEDHLMSAMNIKLGPALKICARINSLKES 914 983 4PZN 914 983 Q8NDX5 A 1 6 75 914 983 4PZN 914 983 Q8NDX5 B 1 6 75 914 983 4PZN 914 983 Q8NDX5 C 1 6 75 914 983 4PZN 914 983 Q8NDX5 D 1 6 75 914 983 4PZN 914 983 Q8NDX5 E 1 6 75 1 initiating methionine MET 909 4PZN A Q8NDX5 UNP 1 1 expression tag GLU 910 4PZN A Q8NDX5 UNP 2 1 expression tag LYS 911 4PZN A Q8NDX5 UNP 3 1 expression tag THR 912 4PZN A Q8NDX5 UNP 4 1 expression tag ARG 913 4PZN A Q8NDX5 UNP 5 1 LEU engineered mutation GLU 971 4PZN A Q8NDX5 UNP 971 63 1 expression tag ARG 984 4PZN A Q8NDX5 UNP 76 1 expression tag HIS 985 4PZN A Q8NDX5 UNP 77 1 expression tag HIS 986 4PZN A Q8NDX5 UNP 78 1 expression tag HIS 987 4PZN A Q8NDX5 UNP 79 1 expression tag HIS 988 4PZN A Q8NDX5 UNP 80 1 expression tag HIS 989 4PZN A Q8NDX5 UNP 81 1 expression tag HIS 990 4PZN A Q8NDX5 UNP 82 2 initiating methionine MET 909 4PZN B Q8NDX5 UNP 1 2 expression tag GLU 910 4PZN B Q8NDX5 UNP 2 2 expression tag LYS 911 4PZN B Q8NDX5 UNP 3 2 expression tag THR 912 4PZN B Q8NDX5 UNP 4 2 expression tag ARG 913 4PZN B Q8NDX5 UNP 5 2 LEU engineered mutation GLU 971 4PZN B Q8NDX5 UNP 971 63 2 expression tag ARG 984 4PZN B Q8NDX5 UNP 76 2 expression tag HIS 985 4PZN B Q8NDX5 UNP 77 2 expression tag HIS 986 4PZN B Q8NDX5 UNP 78 2 expression tag HIS 987 4PZN B Q8NDX5 UNP 79 2 expression tag HIS 988 4PZN B Q8NDX5 UNP 80 2 expression tag HIS 989 4PZN B Q8NDX5 UNP 81 2 initiating methionine HIS 990 4PZN B Q8NDX5 UNP 82 3 expression tag MET 909 4PZN C Q8NDX5 UNP 1 3 expression tag GLU 910 4PZN C Q8NDX5 UNP 2 3 expression tag LYS 911 4PZN C Q8NDX5 UNP 3 3 expression tag THR 912 4PZN C Q8NDX5 UNP 4 3 expression tag ARG 913 4PZN C Q8NDX5 UNP 5 3 LEU engineered mutation GLU 971 4PZN C Q8NDX5 UNP 971 63 3 expression tag ARG 984 4PZN C Q8NDX5 UNP 76 3 expression tag HIS 985 4PZN C Q8NDX5 UNP 77 3 expression tag HIS 986 4PZN C Q8NDX5 UNP 78 3 expression tag HIS 987 4PZN C Q8NDX5 UNP 79 3 expression tag HIS 988 4PZN C Q8NDX5 UNP 80 3 expression tag HIS 989 4PZN C Q8NDX5 UNP 81 3 expression tag HIS 990 4PZN C Q8NDX5 UNP 82 4 initiating methionine MET 909 4PZN D Q8NDX5 UNP 1 4 expression tag GLU 910 4PZN D Q8NDX5 UNP 2 4 expression tag LYS 911 4PZN D Q8NDX5 UNP 3 4 expression tag THR 912 4PZN D Q8NDX5 UNP 4 4 expression tag ARG 913 4PZN D Q8NDX5 UNP 5 4 LEU engineered mutation GLU 971 4PZN D Q8NDX5 UNP 971 63 4 expression tag ARG 984 4PZN D Q8NDX5 UNP 76 4 expression tag HIS 985 4PZN D Q8NDX5 UNP 77 4 expression tag HIS 986 4PZN D Q8NDX5 UNP 78 4 expression tag HIS 987 4PZN D Q8NDX5 UNP 79 4 expression tag HIS 988 4PZN D Q8NDX5 UNP 80 4 expression tag HIS 989 4PZN D Q8NDX5 UNP 81 4 expression tag HIS 990 4PZN D Q8NDX5 UNP 82 5 initiating methionine MET 909 4PZN E Q8NDX5 UNP 1 5 expression tag GLU 910 4PZN E Q8NDX5 UNP 2 5 expression tag LYS 911 4PZN E Q8NDX5 UNP 3 5 expression tag THR 912 4PZN E Q8NDX5 UNP 4 5 expression tag ARG 913 4PZN E Q8NDX5 UNP 5 5 LEU engineered mutation GLU 971 4PZN E Q8NDX5 UNP 971 63 5 expression tag ARG 984 4PZN E Q8NDX5 UNP 76 5 expression tag HIS 985 4PZN E Q8NDX5 UNP 77 5 expression tag HIS 986 4PZN E Q8NDX5 UNP 78 5 expression tag HIS 987 4PZN E Q8NDX5 UNP 79 5 expression tag HIS 988 4PZN E Q8NDX5 UNP 80 5 expression tag HIS 989 4PZN E Q8NDX5 UNP 81 5 expression tag HIS 990 4PZN E Q8NDX5 UNP 82 BINDING SITE FOR RESIDUE EDO A 1001 A EDO 1001 Software 4 BINDING SITE FOR RESIDUE EDO A 1002 A EDO 1002 Software 4 BINDING SITE FOR RESIDUE EDO B 1001 B EDO 1001 Software 5 BINDING SITE FOR RESIDUE EDO C 1001 C EDO 1001 Software 2 BINDING SITE FOR RESIDUE EDO C 1002 C EDO 1002 Software 3 A VAL 921 A VAL 13 4 1_555 A ASP 922 A ASP 14 4 1_555 A HOH 1104 K HOH 4 1_555 A HOH 1108 K HOH 4 1_555 A PRO 932 A PRO 24 4 1_555 A CYS 934 A CYS 26 4 1_555 A LYS 972 A LYS 64 4 1_555 A HOH 1109 K HOH 4 1_555 B PRO 932 B PRO 24 5 1_555 B CYS 934 B CYS 26 5 1_555 B PRO 969 B PRO 61 5 1_555 B LYS 972 B LYS 64 5 1_555 B HOH 1104 L HOH 5 1_555 C PRO 932 C PRO 24 2 1_555 C LYS 972 C LYS 64 2 1_555 C MET 960 C MET 52 3 1_555 C ASN 964 C ASN 56 3 1_555 C ILE 965 C ILE 57 3 1_555 1 P 1